RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4727
         (253 letters)



>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 202

 Score =  253 bits (647), Expect = 3e-86
 Identities = 87/191 (45%), Positives = 127/191 (66%), Gaps = 4/191 (2%)

Query: 55  IVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVT 114
           +    L    +R +TL+FS +AVI  RDG+L LMFRVG++R SH++ A +R +L++ + T
Sbjct: 13  VQHGNLG--SERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQT 70

Query: 115 LEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVI 174
            EGE LP  Q EL VG     D++F + P TI H I+  SP Y LS   M  E+FE+VVI
Sbjct: 71  PEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVI 130

Query: 175 LEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLC 234
           LEG++E+TGMT QAR+SY  +E+LWGHRF  ++S ++  G  +V+Y  F+ T+EV TP  
Sbjct: 131 LEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEE--GFFKVDYSQFHATFEVPTPPY 188

Query: 235 SAQALDQLLAI 245
           S +  +++L +
Sbjct: 189 SVKEQEEMLLM 199


>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel
           kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
           188]}
          Length = 161

 Score =  208 bits (530), Expect = 3e-69
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 5/165 (3%)

Query: 67  TQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQE 126
           T  +LFS   VI   +G+  LM R+ ++R   IIEA V   L+R +++ EG +   +   
Sbjct: 1   TAGVLFSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDL 60

Query: 127 LKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTT 186
                        F    T++H I+  SP+Y  +   +     E +V+  G  E+     
Sbjct: 61  TLTRSRSP----IFSLSWTVMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNV 116

Query: 187 QARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHT 231
            AR +Y  +EI+WG  F  + +   + G   ++ G F+   + H 
Sbjct: 117 HARHAYSCDEIIWGGHFVDVFTTLPD-GRRALDLGKFHEIAQHHH 160


>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 158

 Score =  204 bits (521), Expect = 9e-68
 Identities = 45/163 (27%), Positives = 86/163 (52%), Gaps = 6/163 (3%)

Query: 67  TQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQE 126
              ++F+R+A++   +G + LM R  + R++ I EA  + +L+R++ + EG  L      
Sbjct: 2   RAKIMFARHAIVRPFNGRMTLMVRAANARQNVIAEARAKMRLMRREHSSEGYSLMKIHD- 60

Query: 127 LKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTT 186
           LK+  +   +   F+    ++H I+  SPL+  +   +   R  ++V++EG  E+T    
Sbjct: 61  LKLVRN---EHPIFLLGWNMMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVM 117

Query: 187 QARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEV 229
           QAR ++  ++I W HR+  L+S     G   ++Y  FN+T  V
Sbjct: 118 QARHAWEHDDIRWHHRYVDLMS--DVDGMTHIDYTRFNDTEPV 158


>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
           kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
           188]}
          Length = 116

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 9/41 (21%), Positives = 23/41 (56%)

Query: 23  GAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRP 63
           G  ++    P A  ++ L+++ G++  A    +++A+ +RP
Sbjct: 76  GYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 116


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 23  GAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSR 62
           G   +  +   A  I  L+  VG+   A   G+VFA+ +R
Sbjct: 77  GYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 116


>d1vpya_ c.1.32.1 (A:) Hypothetical protein EF0366 {Enterococcus
           faecalis [TaxId: 1351]}
          Length = 269

 Score = 27.3 bits (60), Expect = 1.5
 Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 1/26 (3%)

Query: 220 YGLFNNTYEVHTPLCSAQALDQLLAI 245
             +FNN         +A  + ++L +
Sbjct: 244 GVIFNNNSGGDAAE-NALQMQKVLNL 268


>d1vpqa_ c.1.32.1 (A:) Hypothetical protein TM1631 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 260

 Score = 27.3 bits (60), Expect = 1.9
 Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 220 YGLFNNTYEVHTPLCSAQALDQLL 243
           Y  FNN Y+    + +A    ++L
Sbjct: 236 YVFFNNCYKGQAAI-NALQFKKML 258


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 903,228
Number of extensions: 40920
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 8
Length of query: 253
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,268,006
Effective search space: 215561020
Effective search space used: 215561020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)