Query psy4728
Match_columns 214
No_of_seqs 157 out of 2251
Neff 10.2
Searched_HMMs 46136
Date Sat Aug 17 00:20:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 7.4E-23 1.6E-27 143.4 15.5 126 52-178 14-156 (160)
2 KOG0027|consensus 99.9 8.2E-22 1.8E-26 140.5 16.1 125 54-178 4-149 (151)
3 KOG0037|consensus 99.9 2.7E-20 5.8E-25 134.5 16.6 145 57-213 56-211 (221)
4 KOG0028|consensus 99.8 3.9E-19 8.5E-24 122.1 14.1 128 51-178 26-170 (172)
5 KOG0030|consensus 99.8 1.4E-19 3E-24 121.4 11.3 124 53-177 6-150 (152)
6 PTZ00183 centrin; Provisional 99.8 8.9E-19 1.9E-23 125.8 16.2 127 52-178 11-154 (158)
7 PTZ00184 calmodulin; Provision 99.8 1.5E-18 3.1E-23 123.4 15.4 126 53-178 6-148 (149)
8 KOG0031|consensus 99.8 2.2E-18 4.8E-23 117.6 14.7 122 53-178 27-165 (171)
9 COG5126 FRQ1 Ca2+-binding prot 99.8 1.2E-18 2.5E-23 122.4 12.3 115 1-121 41-155 (160)
10 KOG0027|consensus 99.8 1.5E-18 3.3E-23 123.7 13.0 121 1-122 29-149 (151)
11 KOG0037|consensus 99.7 4.4E-16 9.6E-21 112.8 13.0 108 1-120 78-186 (221)
12 PTZ00183 centrin; Provisional 99.6 4.5E-15 9.8E-20 106.5 12.8 118 17-140 18-152 (158)
13 PTZ00184 calmodulin; Provision 99.6 5.8E-15 1.3E-19 104.8 13.0 115 1-120 32-146 (149)
14 KOG0028|consensus 99.6 4.2E-15 9.2E-20 102.4 11.6 116 1-121 54-169 (172)
15 KOG0036|consensus 99.6 9.2E-15 2E-19 114.9 14.5 154 54-211 10-175 (463)
16 KOG4223|consensus 99.6 6.2E-15 1.3E-19 112.7 10.0 162 16-177 113-304 (325)
17 KOG0044|consensus 99.6 6.3E-14 1.4E-18 101.9 14.6 142 12-178 22-175 (193)
18 KOG0034|consensus 99.6 5.4E-14 1.2E-18 102.2 14.1 122 53-178 28-175 (187)
19 KOG4223|consensus 99.5 6.7E-14 1.5E-18 107.1 11.0 155 55-211 74-260 (325)
20 KOG0030|consensus 99.5 1.2E-13 2.5E-18 93.1 9.5 114 2-119 33-148 (152)
21 KOG2643|consensus 99.4 1.4E-12 3.1E-17 103.4 11.2 177 26-211 209-444 (489)
22 KOG0031|consensus 99.4 6.4E-12 1.4E-16 86.2 12.2 113 1-122 53-165 (171)
23 KOG0036|consensus 99.4 9.3E-12 2E-16 98.2 12.1 111 2-123 36-147 (463)
24 KOG0044|consensus 99.4 3.4E-11 7.4E-16 87.7 12.9 136 57-212 25-167 (193)
25 KOG2562|consensus 99.3 4.2E-11 9.2E-16 95.8 12.1 178 19-212 142-371 (493)
26 KOG2643|consensus 99.3 5.4E-11 1.2E-15 94.6 12.3 170 20-200 290-477 (489)
27 cd05022 S-100A13 S-100A13: S-1 99.3 1.8E-11 3.8E-16 78.6 7.3 65 114-178 8-75 (89)
28 PF13499 EF-hand_7: EF-hand do 99.3 2.7E-11 6E-16 73.8 7.8 62 59-120 1-66 (66)
29 KOG0034|consensus 99.2 7.1E-10 1.5E-14 80.8 13.8 95 13-117 27-127 (187)
30 PF13499 EF-hand_7: EF-hand do 99.2 1.1E-10 2.3E-15 71.2 7.5 60 117-176 3-66 (66)
31 cd05022 S-100A13 S-100A13: S-1 99.2 1.4E-10 3E-15 74.4 8.2 68 55-122 5-75 (89)
32 KOG0377|consensus 99.2 9.2E-10 2E-14 87.8 14.2 121 56-178 462-615 (631)
33 cd05027 S-100B S-100B: S-100B 99.2 2.7E-10 5.8E-15 73.2 8.2 65 114-178 8-79 (88)
34 cd05027 S-100B S-100B: S-100B 99.1 6.4E-10 1.4E-14 71.5 9.2 67 55-121 5-78 (88)
35 KOG0751|consensus 99.1 9.4E-10 2E-14 88.9 10.8 155 13-175 71-241 (694)
36 cd05029 S-100A6 S-100A6: S-100 99.1 8.7E-10 1.9E-14 70.8 8.1 64 115-178 11-79 (88)
37 PF13833 EF-hand_8: EF-hand do 99.1 7.2E-10 1.6E-14 64.7 6.8 52 127-178 1-53 (54)
38 PLN02964 phosphatidylserine de 99.1 3.4E-09 7.5E-14 90.3 13.0 100 55-178 140-243 (644)
39 smart00027 EH Eps15 homology d 99.0 1.6E-09 3.5E-14 71.1 8.0 69 54-124 6-74 (96)
40 cd05031 S-100A10_like S-100A10 99.0 1.9E-09 4.1E-14 70.4 7.9 66 113-178 7-79 (94)
41 cd05025 S-100A1 S-100A1: S-100 99.0 5.4E-09 1.2E-13 68.0 9.4 65 114-178 9-80 (92)
42 cd05031 S-100A10_like S-100A10 99.0 3.7E-09 8E-14 69.1 8.4 68 56-123 6-80 (94)
43 cd05025 S-100A1 S-100A1: S-100 99.0 5.7E-09 1.2E-13 67.9 9.1 66 56-121 7-79 (92)
44 cd05026 S-100Z S-100Z: S-100Z 99.0 4.1E-09 8.8E-14 68.6 8.1 65 114-178 10-81 (93)
45 cd00052 EH Eps15 homology doma 99.0 3.6E-09 7.8E-14 64.5 7.1 60 117-178 2-61 (67)
46 cd05026 S-100Z S-100Z: S-100Z 99.0 9.3E-09 2E-13 66.9 9.1 68 55-122 7-81 (93)
47 cd05029 S-100A6 S-100A6: S-100 98.9 1.2E-08 2.7E-13 65.5 9.2 67 55-121 7-78 (88)
48 KOG0038|consensus 98.9 9.5E-09 2.1E-13 70.1 8.9 96 19-119 74-174 (189)
49 cd00052 EH Eps15 homology doma 98.9 6E-09 1.3E-13 63.5 7.2 60 61-122 2-61 (67)
50 PF13833 EF-hand_8: EF-hand do 98.9 8.8E-09 1.9E-13 60.0 7.0 51 71-121 1-52 (54)
51 cd00213 S-100 S-100: S-100 dom 98.9 1.1E-08 2.5E-13 65.9 8.1 68 55-122 5-79 (88)
52 smart00027 EH Eps15 homology d 98.9 1.4E-08 3E-13 66.6 8.1 63 114-178 10-72 (96)
53 cd00213 S-100 S-100: S-100 dom 98.9 1.2E-08 2.5E-13 65.8 7.4 65 114-178 8-79 (88)
54 cd00051 EFh EF-hand, calcium b 98.9 2E-08 4.3E-13 59.7 7.5 60 117-176 3-62 (63)
55 KOG4251|consensus 98.9 1.1E-07 2.3E-12 70.7 12.4 159 14-175 99-342 (362)
56 KOG0751|consensus 98.8 5.3E-08 1.1E-12 79.0 11.5 146 56-211 31-198 (694)
57 cd00051 EFh EF-hand, calcium b 98.8 2.2E-08 4.9E-13 59.5 7.4 61 60-120 2-62 (63)
58 KOG0038|consensus 98.8 2.2E-08 4.8E-13 68.4 7.7 83 96-178 73-177 (189)
59 cd05023 S-100A11 S-100A11: S-1 98.8 3.2E-08 7E-13 63.6 8.0 64 115-178 10-80 (89)
60 KOG0377|consensus 98.8 5.1E-08 1.1E-12 78.1 10.7 112 14-125 462-618 (631)
61 PLN02964 phosphatidylserine de 98.8 1.3E-07 2.9E-12 80.8 13.8 103 16-124 143-245 (644)
62 PF14658 EF-hand_9: EF-hand do 98.8 6.4E-08 1.4E-12 57.6 7.0 60 119-178 3-64 (66)
63 cd05023 S-100A11 S-100A11: S-1 98.7 1.9E-07 4.1E-12 60.1 8.9 67 55-121 6-79 (89)
64 KOG0040|consensus 98.7 2E-07 4.4E-12 84.0 11.8 116 53-176 2248-2396(2399)
65 cd00252 SPARC_EC SPARC_EC; ext 98.7 1.5E-07 3.2E-12 63.5 8.1 62 55-120 45-106 (116)
66 PF14658 EF-hand_9: EF-hand do 98.7 1.3E-07 2.8E-12 56.3 6.8 60 63-122 3-64 (66)
67 cd05030 calgranulins Calgranul 98.7 1.3E-07 2.9E-12 60.8 7.1 64 115-178 9-79 (88)
68 KOG2562|consensus 98.6 5.5E-07 1.2E-11 72.7 11.2 157 15-174 224-420 (493)
69 cd00252 SPARC_EC SPARC_EC; ext 98.6 1.5E-07 3.3E-12 63.4 6.7 58 117-178 51-108 (116)
70 cd05030 calgranulins Calgranul 98.5 6.1E-07 1.3E-11 57.7 7.6 67 56-122 6-79 (88)
71 KOG0041|consensus 98.5 6.6E-07 1.4E-11 64.5 7.7 78 54-134 95-172 (244)
72 KOG4251|consensus 98.4 8E-07 1.7E-11 66.2 7.1 157 55-211 98-300 (362)
73 KOG0041|consensus 98.4 3.2E-06 6.9E-11 61.1 8.4 90 115-208 100-191 (244)
74 PF00036 EF-hand_1: EF hand; 98.4 1E-06 2.2E-11 44.0 4.0 29 59-87 1-29 (29)
75 cd05024 S-100A10 S-100A10: A s 98.3 1.3E-05 2.9E-10 51.2 9.7 62 116-178 10-76 (91)
76 PF00036 EF-hand_1: EF hand; 98.3 1.2E-06 2.7E-11 43.7 3.4 28 17-44 1-28 (29)
77 PF13405 EF-hand_6: EF-hand do 98.2 4E-06 8.8E-11 42.6 4.1 30 59-88 1-31 (31)
78 PF13405 EF-hand_6: EF-hand do 98.0 7.9E-06 1.7E-10 41.5 3.4 30 115-144 1-31 (31)
79 cd05024 S-100A10 S-100A10: A s 98.0 7.7E-05 1.7E-09 47.7 8.1 63 56-119 6-73 (91)
80 KOG0040|consensus 98.0 7.3E-05 1.6E-09 68.4 10.7 89 111-203 2250-2345(2399)
81 PF12763 EF-hand_4: Cytoskelet 97.9 8.4E-05 1.8E-09 49.1 7.9 62 113-177 9-70 (104)
82 PF14788 EF-hand_10: EF hand; 97.9 6.6E-05 1.4E-09 42.2 6.1 48 131-178 2-49 (51)
83 PF12763 EF-hand_4: Cytoskelet 97.9 6.5E-05 1.4E-09 49.6 7.0 67 54-123 6-72 (104)
84 PF14788 EF-hand_10: EF hand; 97.9 3.3E-05 7.2E-10 43.4 4.7 45 1-45 6-50 (51)
85 PF13202 EF-hand_5: EF hand; P 97.8 3.7E-05 8E-10 36.9 3.5 25 60-84 1-25 (25)
86 KOG0169|consensus 97.7 0.0011 2.3E-08 57.4 13.3 152 26-178 102-274 (746)
87 KOG0046|consensus 97.6 0.00025 5.4E-09 58.6 7.5 72 51-123 12-86 (627)
88 PRK12309 transaldolase/EF-hand 97.6 0.00034 7.4E-09 57.1 7.7 52 56-120 332-383 (391)
89 PRK12309 transaldolase/EF-hand 97.6 0.00038 8.2E-09 56.9 8.0 58 108-178 327-385 (391)
90 KOG1029|consensus 97.5 0.0011 2.5E-08 57.2 10.5 57 118-176 199-255 (1118)
91 PF13202 EF-hand_5: EF hand; P 97.5 0.00014 3E-09 34.9 3.0 25 18-42 1-25 (25)
92 KOG4666|consensus 97.4 0.00022 4.7E-09 55.6 4.1 66 16-86 259-324 (412)
93 PF10591 SPARC_Ca_bdg: Secrete 97.2 0.0002 4.3E-09 48.2 1.7 60 56-117 52-111 (113)
94 PF10591 SPARC_Ca_bdg: Secrete 97.1 0.00016 3.4E-09 48.7 0.6 55 119-175 59-113 (113)
95 PF05042 Caleosin: Caleosin re 97.1 0.028 6.1E-07 40.3 11.6 119 57-176 6-164 (174)
96 KOG1029|consensus 97.0 0.0048 1E-07 53.6 8.3 72 57-130 194-265 (1118)
97 KOG4065|consensus 96.8 0.0062 1.3E-07 40.3 5.9 57 62-118 71-141 (144)
98 PF09279 EF-hand_like: Phospho 96.7 0.0059 1.3E-07 38.6 5.5 60 118-178 4-69 (83)
99 KOG4065|consensus 96.7 0.0091 2E-07 39.5 6.1 58 118-175 71-142 (144)
100 KOG4666|consensus 96.7 0.005 1.1E-07 48.3 5.7 59 119-178 301-359 (412)
101 smart00054 EFh EF-hand, calciu 96.7 0.0033 7.1E-08 30.2 3.2 27 60-86 2-28 (29)
102 smart00054 EFh EF-hand, calciu 96.5 0.0034 7.4E-08 30.1 2.7 28 17-44 1-28 (29)
103 KOG0046|consensus 96.5 0.014 3E-07 48.7 7.4 65 117-182 22-89 (627)
104 KOG1707|consensus 96.5 0.03 6.6E-07 47.5 9.4 117 53-175 190-374 (625)
105 KOG0169|consensus 96.1 0.27 6E-06 43.1 13.2 115 14-140 134-248 (746)
106 KOG1955|consensus 95.9 0.029 6.3E-07 46.6 6.5 75 54-130 227-301 (737)
107 PF09279 EF-hand_like: Phospho 95.6 0.062 1.3E-06 33.8 6.0 61 59-120 1-67 (83)
108 KOG1955|consensus 95.1 0.057 1.2E-06 44.9 5.5 62 115-178 232-293 (737)
109 PF05517 p25-alpha: p25-alpha 94.1 0.79 1.7E-05 32.6 8.9 66 120-185 8-76 (154)
110 PF05517 p25-alpha: p25-alpha 93.6 0.67 1.4E-05 33.0 7.8 79 63-141 7-89 (154)
111 PF08726 EFhand_Ca_insen: Ca2+ 93.1 0.062 1.3E-06 32.6 1.6 54 113-174 5-65 (69)
112 KOG3866|consensus 93.0 0.55 1.2E-05 36.9 6.9 61 118-178 248-324 (442)
113 KOG1265|consensus 92.4 1.7 3.7E-05 39.2 9.8 77 33-118 205-295 (1189)
114 KOG2243|consensus 92.4 0.28 6.1E-06 46.0 5.3 58 119-177 4062-4119(5019)
115 KOG3555|consensus 91.4 0.26 5.7E-06 39.2 3.6 57 118-178 254-310 (434)
116 KOG0035|consensus 91.1 2.2 4.7E-05 38.7 9.3 65 53-117 742-811 (890)
117 KOG3866|consensus 90.7 1.2 2.6E-05 35.2 6.5 86 9-119 220-321 (442)
118 KOG0042|consensus 90.4 0.99 2.2E-05 38.6 6.2 71 53-123 588-658 (680)
119 KOG4347|consensus 90.3 0.57 1.2E-05 40.5 4.8 60 14-80 553-612 (671)
120 KOG0042|consensus 90.3 0.67 1.4E-05 39.6 5.2 61 118-178 597-657 (680)
121 KOG3555|consensus 89.8 0.71 1.5E-05 36.9 4.7 65 57-125 249-313 (434)
122 KOG4347|consensus 89.7 0.8 1.7E-05 39.7 5.3 81 4-89 487-586 (671)
123 KOG0998|consensus 89.5 0.36 7.8E-06 43.9 3.3 59 118-178 287-345 (847)
124 PLN02952 phosphoinositide phos 89.4 4.5 9.7E-05 35.4 9.7 87 29-120 13-108 (599)
125 KOG4578|consensus 88.8 0.39 8.4E-06 38.1 2.6 58 119-178 338-398 (421)
126 KOG1265|consensus 88.6 6.7 0.00014 35.7 10.1 109 67-178 157-299 (1189)
127 PF14513 DAG_kinase_N: Diacylg 88.5 1.6 3.4E-05 30.4 5.2 68 128-199 5-79 (138)
128 KOG2243|consensus 88.1 1.1 2.3E-05 42.6 5.2 58 63-121 4062-4119(5019)
129 PF09069 EF-hand_3: EF-hand; 88.0 5.2 0.00011 25.7 8.4 62 114-178 3-75 (90)
130 PF05042 Caleosin: Caleosin re 87.2 4.9 0.00011 29.0 7.2 72 12-84 92-164 (174)
131 KOG1707|consensus 87.0 4 8.6E-05 35.3 7.6 96 115-210 196-333 (625)
132 KOG4578|consensus 86.5 0.71 1.5E-05 36.6 2.8 61 58-120 333-396 (421)
133 PF08976 DUF1880: Domain of un 86.1 0.73 1.6E-05 30.8 2.3 32 147-178 4-35 (118)
134 PF08976 DUF1880: Domain of un 85.7 0.77 1.7E-05 30.7 2.3 33 12-44 3-35 (118)
135 KOG0998|consensus 85.5 1.2 2.6E-05 40.7 4.2 115 58-177 11-189 (847)
136 KOG0035|consensus 84.4 6.7 0.00014 35.8 8.1 66 113-178 746-816 (890)
137 PF14513 DAG_kinase_N: Diacylg 83.9 7.3 0.00016 27.2 6.6 69 30-106 5-81 (138)
138 PLN02952 phosphoinositide phos 80.5 16 0.00034 32.2 8.8 55 128-183 14-70 (599)
139 PF08726 EFhand_Ca_insen: Ca2+ 78.9 2.2 4.7E-05 25.9 2.3 52 58-117 6-64 (69)
140 KOG1264|consensus 78.4 15 0.00032 33.4 8.0 121 57-178 143-293 (1267)
141 KOG4403|consensus 77.2 24 0.00052 29.4 8.3 100 12-127 64-164 (575)
142 PF07308 DUF1456: Protein of u 76.2 12 0.00027 22.5 5.1 48 131-178 14-61 (68)
143 PLN02222 phosphoinositide phos 72.2 19 0.00041 31.6 7.1 62 115-178 26-90 (581)
144 KOG3449|consensus 71.9 16 0.00036 24.2 5.1 55 116-175 3-57 (112)
145 PF11116 DUF2624: Protein of u 71.0 24 0.00051 22.4 7.8 64 1-67 19-82 (85)
146 KOG3449|consensus 70.4 29 0.00062 23.1 6.3 51 62-117 5-55 (112)
147 KOG4301|consensus 69.8 20 0.00042 29.0 6.1 160 10-182 7-177 (434)
148 PF12174 RST: RCD1-SRO-TAF4 (R 69.3 9.4 0.0002 23.2 3.4 51 129-182 7-57 (70)
149 cd07313 terB_like_2 tellurium 68.2 25 0.00055 22.7 5.7 69 128-201 13-83 (104)
150 PTZ00373 60S Acidic ribosomal 66.3 24 0.00053 23.6 5.2 56 115-175 4-59 (112)
151 PF09068 EF-hand_2: EF hand; 65.6 41 0.00089 23.1 8.4 105 29-143 11-126 (127)
152 PLN02228 Phosphoinositide phos 64.7 41 0.00089 29.5 7.6 49 130-178 38-92 (567)
153 PLN02230 phosphoinositide phos 64.4 40 0.00086 29.8 7.4 63 115-178 30-102 (598)
154 KOG2301|consensus 63.1 7.9 0.00017 37.9 3.3 87 52-139 1411-1501(1592)
155 PF11116 DUF2624: Protein of u 63.0 36 0.00078 21.5 8.0 50 129-178 13-62 (85)
156 cd05833 Ribosomal_P2 Ribosomal 62.8 30 0.00066 23.0 5.2 59 115-178 2-60 (109)
157 PF07308 DUF1456: Protein of u 62.7 27 0.00059 21.0 4.5 44 2-45 19-62 (68)
158 PF05099 TerB: Tellurite resis 61.4 11 0.00025 25.8 3.2 74 127-205 36-111 (140)
159 COG4359 Uncharacterized conser 60.9 28 0.00062 25.7 5.1 81 70-180 9-89 (220)
160 TIGR01848 PHA_reg_PhaR polyhyd 59.0 50 0.0011 21.9 5.9 20 122-141 11-30 (107)
161 cd07313 terB_like_2 tellurium 56.8 51 0.0011 21.2 5.8 51 72-122 13-65 (104)
162 PF09069 EF-hand_3: EF-hand; 55.7 52 0.0011 21.1 7.7 29 57-86 2-30 (90)
163 PRK10236 hypothetical protein; 53.8 1E+02 0.0022 23.7 10.1 29 12-40 16-44 (237)
164 KOG2871|consensus 52.9 13 0.00028 30.4 2.5 61 57-117 308-369 (449)
165 PF07879 PHB_acc_N: PHB/PHA ac 52.1 31 0.00066 20.5 3.3 22 121-142 10-31 (64)
166 PF00404 Dockerin_1: Dockerin 51.8 23 0.00051 15.9 2.5 18 26-43 1-18 (21)
167 PLN00138 large subunit ribosom 51.4 60 0.0013 21.8 5.1 54 116-174 3-56 (113)
168 PF03672 UPF0154: Uncharacteri 51.1 50 0.0011 19.7 4.2 33 127-159 28-60 (64)
169 TIGR01639 P_fal_TIGR01639 Plas 50.9 43 0.00093 19.6 4.0 30 130-159 9-38 (61)
170 PF09068 EF-hand_2: EF hand; 50.2 81 0.0017 21.6 8.0 73 14-86 39-125 (127)
171 PF09336 Vps4_C: Vps4 C termin 48.9 28 0.00061 20.5 3.0 26 130-155 29-54 (62)
172 TIGR01848 PHA_reg_PhaR polyhyd 48.4 46 0.001 22.0 4.1 21 66-86 11-31 (107)
173 cd08316 Death_FAS_TNFRSF6 Deat 46.7 80 0.0017 20.5 7.3 78 74-158 17-94 (97)
174 KOG4403|consensus 46.2 38 0.00082 28.4 4.2 124 9-141 20-145 (575)
175 COG4103 Uncharacterized protei 45.5 1.1E+02 0.0023 21.6 6.5 68 128-201 42-112 (148)
176 PLN02223 phosphoinositide phos 45.5 1E+02 0.0023 26.8 6.9 53 126-178 27-92 (537)
177 PRK00523 hypothetical protein; 45.1 65 0.0014 19.7 4.1 33 127-159 36-68 (72)
178 KOG2301|consensus 44.6 28 0.0006 34.4 3.7 69 109-178 1412-1484(1592)
179 COG3763 Uncharacterized protei 43.9 73 0.0016 19.3 4.2 33 127-159 35-67 (71)
180 PF12174 RST: RCD1-SRO-TAF4 (R 42.1 33 0.00071 20.8 2.6 43 73-118 7-49 (70)
181 PF08461 HTH_12: Ribonuclease 41.5 46 0.001 19.8 3.1 37 127-163 10-46 (66)
182 PTZ00373 60S Acidic ribosomal 41.1 1.1E+02 0.0024 20.5 5.5 50 63-117 8-57 (112)
183 PLN02508 magnesium-protoporphy 39.1 72 0.0016 25.8 4.6 71 124-205 53-123 (357)
184 PHA02335 hypothetical protein 39.0 60 0.0013 21.4 3.5 42 152-207 12-53 (118)
185 PLN02222 phosphoinositide phos 38.9 1.5E+02 0.0033 26.2 7.0 61 58-120 25-88 (581)
186 PF10437 Lip_prot_lig_C: Bacte 38.3 45 0.00098 20.8 3.0 34 9-42 52-86 (86)
187 KOG2871|consensus 37.9 34 0.00075 28.1 2.8 64 114-177 309-373 (449)
188 cd08315 Death_TRAILR_DR4_DR5 D 37.7 1.1E+02 0.0025 19.7 9.1 87 58-156 4-90 (96)
189 PF04157 EAP30: EAP30/Vps36 fa 37.4 1.5E+02 0.0034 22.3 6.2 75 102-177 105-201 (223)
190 PRK13654 magnesium-protoporphy 37.3 67 0.0014 26.0 4.2 54 124-177 57-110 (355)
191 KOG1785|consensus 37.0 2E+02 0.0043 24.1 6.9 77 2-87 196-275 (563)
192 PF13623 SurA_N_2: SurA N-term 36.6 1.5E+02 0.0033 20.8 5.6 20 137-156 96-115 (145)
193 PLN02228 Phosphoinositide phos 36.5 1.3E+02 0.0028 26.5 6.2 71 10-86 18-92 (567)
194 cd01047 ACSF Aerobic Cyclase S 36.2 67 0.0014 25.6 4.0 54 125-178 38-91 (323)
195 CHL00185 ycf59 magnesium-proto 35.8 56 0.0012 26.4 3.6 54 124-177 53-106 (351)
196 PF01023 S_100: S-100/ICaBP ty 35.2 78 0.0017 17.1 4.7 30 57-86 5-36 (44)
197 PRK01844 hypothetical protein; 34.6 1.1E+02 0.0024 18.7 4.1 33 127-159 35-67 (72)
198 PF03979 Sigma70_r1_1: Sigma-7 34.6 47 0.001 20.7 2.5 30 128-159 19-48 (82)
199 PF14338 Mrr_N: Mrr N-terminal 33.2 1.3E+02 0.0028 19.0 6.7 60 113-178 2-62 (92)
200 PLN02230 phosphoinositide phos 33.2 2.5E+02 0.0054 25.0 7.4 63 57-120 28-100 (598)
201 KOG1954|consensus 32.5 64 0.0014 26.8 3.5 53 119-174 449-501 (532)
202 KOG0869|consensus 32.4 1.4E+02 0.0029 21.4 4.6 36 67-102 79-114 (168)
203 TIGR00135 gatC glutamyl-tRNA(G 32.4 1.1E+02 0.0024 19.4 4.1 29 131-159 1-29 (93)
204 KOG4286|consensus 32.3 2.2E+02 0.0047 26.1 6.8 53 17-75 471-523 (966)
205 PF02761 Cbl_N2: CBL proto-onc 32.2 1.4E+02 0.0029 19.0 6.2 49 129-177 21-69 (85)
206 KOG4004|consensus 31.8 16 0.00034 27.1 0.1 47 30-84 202-248 (259)
207 KOG0871|consensus 31.7 1.3E+02 0.0027 21.3 4.3 37 66-102 58-94 (156)
208 KOG4301|consensus 31.4 2.6E+02 0.0056 22.9 6.6 61 20-87 114-174 (434)
209 TIGR03573 WbuX N-acetyl sugar 29.4 1.5E+02 0.0032 24.2 5.3 33 127-159 299-331 (343)
210 COG2058 RPP1A Ribosomal protei 28.9 1.8E+02 0.0039 19.4 4.8 56 116-177 3-58 (109)
211 PF06384 ICAT: Beta-catenin-in 28.9 79 0.0017 19.7 2.7 26 133-158 19-44 (78)
212 PF06518 DUF1104: Protein of u 28.7 1.2E+02 0.0025 19.7 3.6 57 30-86 15-71 (93)
213 TIGR02029 AcsF magnesium-proto 28.7 75 0.0016 25.5 3.2 54 125-178 48-101 (337)
214 PF07128 DUF1380: Protein of u 27.8 1.3E+02 0.0027 21.1 3.9 31 131-161 27-57 (139)
215 cd05833 Ribosomal_P2 Ribosomal 27.4 1.9E+02 0.0042 19.2 5.4 41 63-103 6-46 (109)
216 PF12995 DUF3879: Domain of un 27.3 2.4E+02 0.0053 20.4 5.9 56 131-206 2-57 (186)
217 cd07176 terB tellurite resista 26.5 1.1E+02 0.0024 19.6 3.5 14 128-141 16-29 (111)
218 PF11020 DUF2610: Domain of un 26.4 1.4E+02 0.003 18.7 3.4 35 144-178 43-77 (82)
219 PRK09430 djlA Dna-J like membr 26.2 2.4E+02 0.0052 22.1 5.7 69 128-197 69-139 (267)
220 PRK00034 gatC aspartyl/glutamy 26.1 1.7E+02 0.0037 18.6 4.2 30 130-159 2-31 (95)
221 PF07862 Nif11: Nitrogen fixat 25.5 91 0.002 17.0 2.5 21 132-152 28-48 (49)
222 cd04411 Ribosomal_P1_P2_L12p R 25.3 2.1E+02 0.0045 18.9 5.6 43 131-178 17-59 (105)
223 PF15144 DUF4576: Domain of un 25.3 34 0.00074 21.1 0.7 43 126-169 36-78 (88)
224 PF12419 DUF3670: SNF2 Helicas 25.2 2.1E+02 0.0045 19.9 4.8 47 71-117 80-136 (141)
225 COG0721 GatC Asp-tRNAAsn/Glu-t 24.9 1.7E+02 0.0037 18.9 4.0 30 130-159 2-31 (96)
226 PF09415 CENP-X: CENP-S associ 24.1 1.8E+02 0.0039 17.7 3.7 64 17-87 4-68 (72)
227 PRK06402 rpl12p 50S ribosomal 23.8 2.3E+02 0.0049 18.8 5.4 40 130-174 16-55 (106)
228 PF05872 DUF853: Bacterial pro 23.5 4E+02 0.0087 23.0 6.7 35 54-88 124-158 (502)
229 PRK00819 RNA 2'-phosphotransfe 23.3 1.8E+02 0.0038 21.4 4.2 33 106-142 29-61 (179)
230 KOG1954|consensus 22.8 2.9E+02 0.0064 23.2 5.6 58 59-119 445-502 (532)
231 COG2036 HHT1 Histones H3 and H 22.2 2.3E+02 0.0049 18.2 6.7 79 2-90 9-87 (91)
232 PF04433 SWIRM: SWIRM domain; 21.9 71 0.0015 19.9 1.7 42 66-113 45-86 (86)
233 cd08327 CARD_RAIDD Caspase act 20.7 2.5E+02 0.0054 18.1 6.1 47 127-178 32-78 (94)
234 PF00690 Cation_ATPase_N: Cati 20.6 1.6E+02 0.0035 17.2 3.1 33 131-163 4-37 (69)
235 PRK09389 (R)-citramalate synth 20.6 1.9E+02 0.0042 24.9 4.6 44 3-46 324-369 (488)
236 PRK14981 DNA-directed RNA poly 20.5 2.2E+02 0.0048 19.0 3.9 28 132-159 80-107 (112)
237 PF11848 DUF3368: Domain of un 20.5 1.7E+02 0.0036 16.0 4.0 33 127-159 14-47 (48)
238 KOG0039|consensus 20.4 1.8E+02 0.0038 26.2 4.4 45 30-87 2-46 (646)
239 PF08485 Polysacc_syn_2C: Poly 20.4 1.2E+02 0.0026 16.9 2.2 35 109-143 3-44 (48)
240 smart00513 SAP Putative DNA-bi 20.1 1.4E+02 0.003 14.9 2.6 19 130-148 3-21 (35)
241 PLN00138 large subunit ribosom 20.1 2.9E+02 0.0062 18.6 5.3 41 63-103 6-46 (113)
242 COG3611 DnaB Replication initi 20.1 5.4E+02 0.012 21.8 8.1 154 31-186 169-349 (417)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.91 E-value=7.4e-23 Score=143.43 Aligned_cols=126 Identities=37% Similarity=0.640 Sum_probs=120.5
Q ss_pred ChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHH--------------
Q psy4728 52 NPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLT-------------- 117 (214)
Q Consensus 52 ~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~-------------- 117 (214)
.++.++.+++++|..+|++++|.|+..+|..+++.+|..++..++..++..++. +.+.|+|.+|+
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~E 92 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEE 92 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHH
Confidence 456788999999999999999999999999999999999999999999999999 89999999998
Q ss_pred ---HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 118 ---RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 118 ---~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.+|+.||.+++|+|+..+|..+++.+|..+++++++.+++.++.+++|.|+|++|++.+..
T Consensus 93 el~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 93 ELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999999999998765
No 2
>KOG0027|consensus
Probab=99.89 E-value=8.2e-22 Score=140.47 Aligned_cols=125 Identities=38% Similarity=0.694 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHH----------------
Q psy4728 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLT---------------- 117 (214)
Q Consensus 54 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~---------------- 117 (214)
......++.+|..||.+++|.|+..++..+++.++..++..++..++..++.+++|.|++++|+
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~ 83 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEAS 83 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccccc
Confidence 4567889999999999999999999999999999999999999999999999999999998887
Q ss_pred -----HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 118 -----RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 118 -----~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.+|+.+|++++|+|+..||+.+|..+|.+.+.+++..+++.+|.+++|.|+|.+|++.+..
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999999999999998865
No 3
>KOG0037|consensus
Probab=99.86 E-value=2.7e-20 Score=134.50 Aligned_cols=145 Identities=27% Similarity=0.396 Sum_probs=135.3
Q ss_pred HHHHHHHHHhHcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCCCCCcccHHHHH----------HHHHhhCC
Q psy4728 57 RAELREAFMLYDREGNGYITTDVLREIISEL-DPNLDYEELNEMIEEIDSDGSGTIDFDVLT----------RAFEAFDQ 125 (214)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~----------~~f~~~D~ 125 (214)
...+...|...|.++.|.|+.+|+.++|... ..+++.+.++.++..+|.+..|.|++.||. ++|+.+|+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~ 135 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDR 135 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3477889999999999999999999999854 457889999999999999999999999997 57899999
Q ss_pred CCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHhcCccC
Q psy4728 126 EKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREE 205 (214)
Q Consensus 126 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~f~~~d~~~ 205 (214)
|++|.|+..||+++|..+|..++++..+.++++++..+.|.|.|++|+.++.. ++.+.++|+.+|.+.
T Consensus 136 D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~------------L~~lt~~Fr~~D~~q 203 (221)
T KOG0037|consen 136 DRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV------------LQRLTEAFRRRDTAQ 203 (221)
T ss_pred CCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH------------HHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999887999999999999998 899999999999999
Q ss_pred Cceeeecc
Q psy4728 206 FMSIMIDV 213 (214)
Q Consensus 206 ~g~i~~~~ 213 (214)
.|.|++.+
T Consensus 204 ~G~i~~~y 211 (221)
T KOG0037|consen 204 QGSITISY 211 (221)
T ss_pred ceeEEEeH
Confidence 99999864
No 4
>KOG0028|consensus
Probab=99.83 E-value=3.9e-19 Score=122.12 Aligned_cols=128 Identities=33% Similarity=0.570 Sum_probs=121.9
Q ss_pred cChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHH-------------
Q psy4728 51 ENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLT------------- 117 (214)
Q Consensus 51 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~------------- 117 (214)
..++.+...++.+|..||.+++|.|+.++|+.+++++|..+...++.+++..+++++.|.|+|++|+
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~ 105 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTK 105 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcH
Confidence 4456777899999999999999999999999999999999999999999999999999999999998
Q ss_pred ----HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 118 ----RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 118 ----~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.+|+.+|-+++|.|+..+|+.+.+.+|+.++++++..++..++.+++|.|+-++|...+++
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999999999998765
No 5
>KOG0030|consensus
Probab=99.83 E-value=1.4e-19 Score=121.40 Aligned_cols=124 Identities=23% Similarity=0.465 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC--CCCcccHHHHH-------------
Q psy4728 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSD--GSGTIDFDVLT------------- 117 (214)
Q Consensus 53 ~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~------------- 117 (214)
+++...+++.+|..||..++|+|+..++..+|+++|.+|++.++.+.+..+.++ .-..|+|++|+
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~ 85 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQG 85 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccC
Confidence 445678999999999999999999999999999999999999998888877665 33556665554
Q ss_pred ------HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy4728 118 ------RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAA 177 (214)
Q Consensus 118 ------~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~ 177 (214)
+-++.||++++|.|...||+++|..+|+.+++++++.++... .|++|.|+|+.|++-+.
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 678899999999999999999999999999999999999998 78899999999998764
No 6
>PTZ00183 centrin; Provisional
Probab=99.82 E-value=8.9e-19 Score=125.81 Aligned_cols=127 Identities=36% Similarity=0.631 Sum_probs=119.0
Q ss_pred ChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHH--------------
Q psy4728 52 NPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLT-------------- 117 (214)
Q Consensus 52 ~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~-------------- 117 (214)
.++.....+..+|..+|.+++|.|+..+|..++..++..++...+..++..++.+++|.|+|++|+
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 90 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPRE 90 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHH
Confidence 345677889999999999999999999999999999988899999999999999999999999997
Q ss_pred ---HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 118 ---RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 118 ---~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.+|..+|.+++|.|+..||..++..++..+++.++..++..++.+++|.|+|++|+.++..
T Consensus 91 ~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 3688999999999999999999999999999999999999999999999999999999875
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.81 E-value=1.5e-18 Score=123.39 Aligned_cols=126 Identities=38% Similarity=0.690 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHH---------------
Q psy4728 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLT--------------- 117 (214)
Q Consensus 53 ~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~--------------- 117 (214)
++.....+..+|..+|.+++|.|+..+|..++..++..++...+..++..++.+++|.|+|++|+
T Consensus 6 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~ 85 (149)
T PTZ00184 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEE 85 (149)
T ss_pred CHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHH
Confidence 34567789999999999999999999999999999988889999999999999999999999998
Q ss_pred --HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 118 --RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 118 --~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.+|..+|.+++|.|+.++|..++..++..++.+++..++..+|.+++|.|+|.+|+.++..
T Consensus 86 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 86 IKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 3688899999999999999999999998999999999999999999999999999988764
No 8
>KOG0031|consensus
Probab=99.81 E-value=2.2e-18 Score=117.59 Aligned_cols=122 Identities=29% Similarity=0.575 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHH---------------
Q psy4728 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLT--------------- 117 (214)
Q Consensus 53 ~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~--------------- 117 (214)
.+.++.+++++|+.+|+|++|.|..++|+.++.++|..++.++++.++... .|.|+|.-|+
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~ 102 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEV 102 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHH
Confidence 456788999999999999999999999999999999999999999999886 7899999988
Q ss_pred --HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 118 --RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 118 --~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.+|..||.++.|.|..+.|+.+|...|..+++++++.+++.+..+..|.++|..|+..+.+
T Consensus 103 I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 103 ILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 5899999999999999999999999999999999999999999999999999999999984
No 9
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.80 E-value=1.2e-18 Score=122.37 Aligned_cols=115 Identities=33% Similarity=0.655 Sum_probs=107.4
Q ss_pred CHHHHHHHcCCCCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHH
Q psy4728 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVL 80 (214)
Q Consensus 1 e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el 80 (214)
+|..+|+++|..++..++.+++..+|. +++.|+|.+|+.++...... .+..+++..+|+.||.+++|.|+..+|
T Consensus 41 el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~-----~~~~Eel~~aF~~fD~d~dG~Is~~eL 114 (160)
T COG5126 41 ELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKR-----GDKEEELREAFKLFDKDHDGYISIGEL 114 (160)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhcc-----CCcHHHHHHHHHHhCCCCCceecHHHH
Confidence 478899999999999999999999999 99999999999999987644 356789999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy4728 81 REIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFE 121 (214)
Q Consensus 81 ~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~ 121 (214)
+.+++.+|..+++++++.++..++.+++|.|+|++|.+++.
T Consensus 115 ~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 115 RRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 99999999999999999999999999999999999987664
No 10
>KOG0027|consensus
Probab=99.80 E-value=1.5e-18 Score=123.66 Aligned_cols=121 Identities=36% Similarity=0.728 Sum_probs=108.2
Q ss_pred CHHHHHHHcCCCCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHH
Q psy4728 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVL 80 (214)
Q Consensus 1 e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el 80 (214)
+|+.+|+.+|+.+++.++..++..+|.+++|.|++.+|+.++........... .....++.+|+.||.+++|.|+..+|
T Consensus 29 el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~-~~~~el~eaF~~fD~d~~G~Is~~el 107 (151)
T KOG0027|consen 29 ELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE-ASSEELKEAFRVFDKDGDGFISASEL 107 (151)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc-ccHHHHHHHHHHHccCCCCcCcHHHH
Confidence 47899999999999999999999999999999999999999997754311000 23568999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q psy4728 81 REIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEA 122 (214)
Q Consensus 81 ~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~ 122 (214)
+.++..+|.+.+..++..+++.++.+++|.|+|++|+.++..
T Consensus 108 ~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 108 KKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 999999999999999999999999999999999999987754
No 11
>KOG0037|consensus
Probab=99.70 E-value=4.4e-16 Score=112.78 Aligned_cols=108 Identities=29% Similarity=0.418 Sum_probs=96.6
Q ss_pred CHHHHHHHcCC-CCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHH
Q psy4728 1 MVGTIMEMLGH-PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDV 79 (214)
Q Consensus 1 e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e 79 (214)
|+.++|...+. +++.+.+..|...+|.+.+|.|+++||..+|+.+ ..++.+|+.+|+|++|.|+..|
T Consensus 78 eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------------~~Wr~vF~~~D~D~SG~I~~sE 145 (221)
T KOG0037|consen 78 ELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------------NQWRNVFRTYDRDRSGTIDSSE 145 (221)
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH------------HHHHHHHHhcccCCCCcccHHH
Confidence 35566664443 5799999999999999999999999999999986 5678899999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4728 80 LREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAF 120 (214)
Q Consensus 80 l~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f 120 (214)
|+++|..+|..++.+-.+.++++++..++|.|.|++|++++
T Consensus 146 L~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~cc 186 (221)
T KOG0037|consen 146 LRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCC 186 (221)
T ss_pred HHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHH
Confidence 99999999999999999999999998778999999998644
No 12
>PTZ00183 centrin; Provisional
Probab=99.65 E-value=4.5e-15 Score=106.48 Aligned_cols=118 Identities=22% Similarity=0.342 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHc-CCCCCHHH
Q psy4728 17 ALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISEL-DPNLDYEE 95 (214)
Q Consensus 17 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l-~~~~~~~~ 95 (214)
++..+|..+|.+++|.|+..+|..++...-.. .....+..+|..+|.+++|.|+..+|..++... ........
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~------~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~ 91 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLGFE------PKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREE 91 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC------CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHH
Confidence 34444555555555555555555555433110 012334455555555555555555555544332 22333444
Q ss_pred HHHHHHHhcCCCCCcccHHHHH----------------HHHHhhCCCCCCCccHHHHHHHH
Q psy4728 96 LNEMIEEIDSDGSGTIDFDVLT----------------RAFEAFDQEKKGSIPTDMVGTIM 140 (214)
Q Consensus 96 ~~~~~~~~d~~~~g~i~~~ef~----------------~~f~~~D~~~~g~i~~~e~~~~l 140 (214)
+..++..+|.+++|.|+.++|. .+|..+|.+++|.|+..+|..++
T Consensus 92 l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 92 ILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 5555555555555555555554 23444455555555555555544
No 13
>PTZ00184 calmodulin; Provisional
Probab=99.65 E-value=5.8e-15 Score=104.76 Aligned_cols=115 Identities=38% Similarity=0.761 Sum_probs=87.8
Q ss_pred CHHHHHHHcCCCCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHH
Q psy4728 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVL 80 (214)
Q Consensus 1 e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el 80 (214)
||..+++.+|..++..++..+++.+|.+++|.|++++|+.++...... ......+..+|..+|.+++|.|+..++
T Consensus 32 e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~-----~~~~~~~~~~F~~~D~~~~g~i~~~e~ 106 (149)
T PTZ00184 32 ELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD-----TDSEEEIKEAFKVFDRDGNGFISAAEL 106 (149)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC-----CcHHHHHHHHHHhhCCCCCCeEeHHHH
Confidence 356677777877778888888888888888888888888777654321 122356777888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4728 81 REIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAF 120 (214)
Q Consensus 81 ~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f 120 (214)
..++..++..++...+..++..++.+++|.|+|++|+.++
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 107 RHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 8888888777888888888888888888888888886544
No 14
>KOG0028|consensus
Probab=99.64 E-value=4.2e-15 Score=102.38 Aligned_cols=116 Identities=33% Similarity=0.579 Sum_probs=106.2
Q ss_pred CHHHHHHHcCCCCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHH
Q psy4728 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVL 80 (214)
Q Consensus 1 e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el 80 (214)
||+.+++++|+.+...++.++...+|.++.|.|++++|+..+...... ......+..+|+.+|-+++|.|++.+|
T Consensus 54 EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e-----~dt~eEi~~afrl~D~D~~Gkis~~~l 128 (172)
T KOG0028|consen 54 ELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE-----RDTKEEIKKAFRLFDDDKTGKISQRNL 128 (172)
T ss_pred HHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc-----cCcHHHHHHHHHcccccCCCCcCHHHH
Confidence 478899999999999999999999999999999999999998766544 246788999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy4728 81 REIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFE 121 (214)
Q Consensus 81 ~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~ 121 (214)
+.+...||..++..++..++..++.+++|.|+-++|..+.+
T Consensus 129 krvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 129 KRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 99999999999999999999999999999999999987654
No 15
>KOG0036|consensus
Probab=99.64 E-value=9.2e-15 Score=114.87 Aligned_cols=154 Identities=22% Similarity=0.363 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCCCcccHHHHH-----------HHHH
Q psy4728 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPN-LDYEELNEMIEEIDSDGSGTIDFDVLT-----------RAFE 121 (214)
Q Consensus 54 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~-----------~~f~ 121 (214)
++...+++..|..+|.+++|.++..++.+.+..+.++ +...-...+++.+|.+.+|.++|++|. .+|.
T Consensus 10 ~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~ 89 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQ 89 (463)
T ss_pred HHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHh
Confidence 4567889999999999999999999999999999887 788889999999999999999999997 4899
Q ss_pred hhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHhc
Q psy4728 122 AFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLY 201 (214)
Q Consensus 122 ~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 201 (214)
..|.+++|.|+.+|+.+.|+.+|.++++++++.+++.+|.++.+.|++++|..++.-+-. ...+..--.+++. ..+
T Consensus 90 ~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~---s~i~di~~~W~h~-~~i 165 (463)
T KOG0036|consen 90 SIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE---SDLEDIYDFWRHV-LLI 165 (463)
T ss_pred hhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh---hHHHHHHHhhhhh-eEE
Confidence 999999999999999999999999999999999999999999999999999999876321 1111111112222 257
Q ss_pred CccCCceeee
Q psy4728 202 DREEFMSIMI 211 (214)
Q Consensus 202 d~~~~g~i~~ 211 (214)
|-+++.+|+-
T Consensus 166 digE~~~iPd 175 (463)
T KOG0036|consen 166 DIGEDAVLPD 175 (463)
T ss_pred EccccccCCc
Confidence 7777777763
No 16
>KOG4223|consensus
Probab=99.60 E-value=6.2e-15 Score=112.73 Aligned_cols=162 Identities=22% Similarity=0.326 Sum_probs=120.4
Q ss_pred HHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhh-----hc---ChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHc
Q psy4728 16 EALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE-----EE---NPEAMRAELREAFMLYDREGNGYITTDVLREIISEL 87 (214)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~-----~~---~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l 87 (214)
.++..-+..+|.+.+|.|+++++...+....... .+ .-.....+-+..|+..|.|++|.+|.+||..+|..-
T Consensus 113 ~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPE 192 (325)
T KOG4223|consen 113 EEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPE 192 (325)
T ss_pred HHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChh
Confidence 3445555555666666666666665554321000 00 012234556678999999999999999999998643
Q ss_pred CC-CCCHHHHHHHHHHhcCCCCCcccHHHHH---------------------HHHHhhCCCCCCCccHHHHHHHHHHcCC
Q psy4728 88 DP-NLDYEELNEMIEEIDSDGSGTIDFDVLT---------------------RAFEAFDQEKKGSIPTDMVGTIMEMLGH 145 (214)
Q Consensus 88 ~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~---------------------~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 145 (214)
.. .+..-.+..-+...|+|++|.|+++||+ +++..+|++++|+++.+|+++++...+.
T Consensus 193 e~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~ 272 (325)
T KOG4223|consen 193 EHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQ 272 (325)
T ss_pred hcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCc
Confidence 22 2333445667778899999999999998 5788889999999999999999877777
Q ss_pred CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy4728 146 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAA 177 (214)
Q Consensus 146 ~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~ 177 (214)
.....++..|+...|.|++|++|++|-+.--.
T Consensus 273 d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d 304 (325)
T KOG4223|consen 273 DHAKAEARHLLHEADEDKDGKLSKEEILEHYD 304 (325)
T ss_pred cHHHHHHHHHhhhhccCccccccHHHHhhCcc
Confidence 77889999999999999999999999875433
No 17
>KOG0044|consensus
Probab=99.60 E-value=6.3e-14 Score=101.89 Aligned_cols=142 Identities=20% Similarity=0.319 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHcCCCC-CcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCC
Q psy4728 12 PQSQEALNEIIKEVDEDG-SGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPN 90 (214)
Q Consensus 12 ~~~~~~~~~l~~~~d~~~-~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~ 90 (214)
.+++++++.+++.|-.+. +|.++.++|..++...... .+.......+|+.||.+++|.|+..|+..++..+-..
T Consensus 22 ~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~-----gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG 96 (193)
T KOG0044|consen 22 KFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPD-----GDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG 96 (193)
T ss_pred CCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCC-----CCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC
Confidence 367889999999997764 8999999999998887653 3456778888999999999999999988888776544
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCCCccHHHHHHHHHHc----C-------CCCCHHHHHHHHHHh
Q psy4728 91 LDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEML----G-------HPQSQEALNEIIKEV 159 (214)
Q Consensus 91 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~~g~i~~~e~~~~l~~~----~-------~~~~~~~~~~l~~~~ 159 (214)
...+.++.. |+.||.+++|+|+..|+..++..+ + .....+.+..+|+.+
T Consensus 97 t~eekl~w~--------------------F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~ 156 (193)
T KOG0044|consen 97 TLEEKLKWA--------------------FRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKM 156 (193)
T ss_pred cHHHHhhhh--------------------heeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHc
Confidence 444445544 555555555555555555554432 2 223467889999999
Q ss_pred CCCCCCceeHHHHHHHHHh
Q psy4728 160 DEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 160 d~~~~~~i~~~eF~~~l~~ 178 (214)
|.|++|.|++++|...+..
T Consensus 157 D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 157 DKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred CCCCCCcccHHHHHHHhhh
Confidence 9999999999999999886
No 18
>KOG0034|consensus
Probab=99.60 E-value=5.4e-14 Score=102.21 Aligned_cols=122 Identities=30% Similarity=0.604 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHhHcCC-CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCc-ccHHHHHH------------
Q psy4728 53 PEAMRAELREAFMLYDRE-GNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGT-IDFDVLTR------------ 118 (214)
Q Consensus 53 ~~~~~~~~~~~f~~~D~~-~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~------------ 118 (214)
+..+...+...|..++.+ ++|.++.+||..++.....+ -..+++..++.+++|. |+|++|+.
T Consensus 28 s~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np----~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~ 103 (187)
T KOG0034|consen 28 SANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNP----LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKR 103 (187)
T ss_pred CHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCc----HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHH
Confidence 345778899999999999 99999999999999433223 3678888888888888 99999983
Q ss_pred -----HHHhhCCCCCCCccHHHHHHHHHHc-CCCCC--HH----HHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 119 -----AFEAFDQEKKGSIPTDMVGTIMEML-GHPQS--QE----ALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 119 -----~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~--~~----~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
+|+.||.+++|+|+.+|+.+++..+ +...+ ++ .++.++..+|.+++|.|+|+||++++.+
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 8999999999999999999999885 33333 44 4455688899999999999999999987
No 19
>KOG4223|consensus
Probab=99.55 E-value=6.7e-14 Score=107.12 Aligned_cols=155 Identities=19% Similarity=0.269 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHH-----------------
Q psy4728 55 AMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLT----------------- 117 (214)
Q Consensus 55 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~----------------- 117 (214)
....++..++.++|.+++|.|+..++...+..........++.+-+..++.+.+|.|+|++++
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 467788899999999999999999999998876666667778888899999999999999887
Q ss_pred -------------HHHHhhCCCCCCCccHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhcc
Q psy4728 118 -------------RAFEAFDQEKKGSIPTDMVGTIMEML-GHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE 183 (214)
Q Consensus 118 -------------~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~ 183 (214)
..|+.-|.+++|.+|.+||..+|..- ...|.+-.+...+..+|.|++|.|+++||+.=+-.....
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~- 232 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGN- 232 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCC-
Confidence 36888999999999999999998654 446778889999999999999999999999999875552
Q ss_pred CCCHHHHHHHHHHHH-HhcCccCCceeee
Q psy4728 184 EENPEAMRAELREAF-MLYDREEFMSIMI 211 (214)
Q Consensus 184 ~~~~~~~~~~~~~~f-~~~d~~~~g~i~~ 211 (214)
...+.|...-++.| ..+|+|++|+|.-
T Consensus 233 -~~epeWv~~Ere~F~~~~DknkDG~L~~ 260 (325)
T KOG4223|consen 233 -EEEPEWVLTEREQFFEFRDKNKDGKLDG 260 (325)
T ss_pred -CCCcccccccHHHHHHHhhcCCCCccCH
Confidence 34445555555555 7899999999863
No 20
>KOG0030|consensus
Probab=99.53 E-value=1.2e-13 Score=93.09 Aligned_cols=114 Identities=22% Similarity=0.494 Sum_probs=99.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCC--CCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHH
Q psy4728 2 VGTIMEMLGHPQSQEALNEIIKEVDED--GSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDV 79 (214)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~l~~~~d~~--~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e 79 (214)
.+.|||++|..+|..++.+....++.+ .-.+|+|++|..++..+.... .+-..+.+-+..+.||++++|.|...+
T Consensus 33 ~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk---~q~t~edfvegLrvFDkeg~G~i~~ae 109 (152)
T KOG0030|consen 33 VGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK---DQGTYEDFVEGLRVFDKEGNGTIMGAE 109 (152)
T ss_pred HHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc---ccCcHHHHHHHHHhhcccCCcceeHHH
Confidence 568999999999999999999999876 458899999999998886552 223446677788999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHH
Q psy4728 80 LREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRA 119 (214)
Q Consensus 80 l~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 119 (214)
++.+|..+|..++..+++.+++.. .|.+|.|+|+.|++.
T Consensus 110 LRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~ 148 (152)
T KOG0030|consen 110 LRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKH 148 (152)
T ss_pred HHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHH
Confidence 999999999999999999999887 567899999999864
No 21
>KOG2643|consensus
Probab=99.44 E-value=1.4e-12 Score=103.39 Aligned_cols=177 Identities=17% Similarity=0.326 Sum_probs=124.7
Q ss_pred CCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHc------CC----CCC---
Q psy4728 26 DEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISEL------DP----NLD--- 92 (214)
Q Consensus 26 d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l------~~----~~~--- 92 (214)
+.+.+|.|+|.+|+-++..+..+ ...++.+|+.||.|+||.|+.+||..+.+-. +. .++
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS~p--------~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~ 280 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLSIP--------ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGN 280 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHccC--------cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccc
Confidence 45667999999999999999877 5788999999999999999999998877542 10 011
Q ss_pred --HHHHH--HHHHHhcCCCCCcccHHHHHH------------HHHhhCCCCCCCccHHHHHHHHHHcCC-CCC--HHHHH
Q psy4728 93 --YEELN--EMIEEIDSDGSGTIDFDVLTR------------AFEAFDQEKKGSIPTDMVGTIMEMLGH-PQS--QEALN 153 (214)
Q Consensus 93 --~~~~~--~~~~~~d~~~~g~i~~~ef~~------------~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~--~~~~~ 153 (214)
.-++. .....+..++++.+++++|++ -|..+|+..+|.|+..+|..++..+.. +.. ...+.
T Consensus 281 s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lk 360 (489)
T KOG2643|consen 281 SFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLK 360 (489)
T ss_pred eehhhhhhhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHH
Confidence 11121 234456899999999999984 488899999999999999999877542 211 11344
Q ss_pred HHHHHhCCCCCCceeHHHHHHHHHhh--hhc------------cCCCHHHHHHHHHH-------------HHHhcCccCC
Q psy4728 154 EIIKEVDEDGSGELEFNEFCTLAAKF--LEE------------EEENPEAMRAELRE-------------AFMLYDREEF 206 (214)
Q Consensus 154 ~l~~~~d~~~~~~i~~~eF~~~l~~~--~~~------------~~~~~~~~~~~~~~-------------~f~~~d~~~~ 206 (214)
.+-+.++.+ +..|++.||.+|++-. +.+ ..-..+.+.+...- +|.+||.|++
T Consensus 361 rvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~D 439 (489)
T KOG2643|consen 361 RVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENND 439 (489)
T ss_pred HHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCC
Confidence 555556444 5679999988887510 110 02233333333332 7899999999
Q ss_pred ceeee
Q psy4728 207 MSIMI 211 (214)
Q Consensus 207 g~i~~ 211 (214)
|.|+-
T Consensus 440 g~LS~ 444 (489)
T KOG2643|consen 440 GTLSH 444 (489)
T ss_pred CcccH
Confidence 99874
No 22
>KOG0031|consensus
Probab=99.42 E-value=6.4e-12 Score=86.21 Aligned_cols=113 Identities=28% Similarity=0.481 Sum_probs=101.7
Q ss_pred CHHHHHHHcCCCCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHH
Q psy4728 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVL 80 (214)
Q Consensus 1 e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el 80 (214)
+|...+.++|...+++++..+++. .+|.|+|.-|+.++...... .+....|..+|..||.+++|.|....+
T Consensus 53 DL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~g-----tdpe~~I~~AF~~FD~~~~G~I~~d~l 123 (171)
T KOG0031|consen 53 DLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNG-----TDPEEVILNAFKTFDDEGSGKIDEDYL 123 (171)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcC-----CCHHHHHHHHHHhcCccCCCccCHHHH
Confidence 467889999999999999999987 58899999999999877654 234688999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q psy4728 81 REIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEA 122 (214)
Q Consensus 81 ~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~ 122 (214)
+.+|...|.+++.++++.+++.+..+..|.++|..|..+...
T Consensus 124 re~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 124 RELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 999999999999999999999999999999999999887653
No 23
>KOG0036|consensus
Probab=99.38 E-value=9.3e-12 Score=98.20 Aligned_cols=111 Identities=24% Similarity=0.404 Sum_probs=100.2
Q ss_pred HHHHHHHcCCC-CCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHH
Q psy4728 2 VGTIMEMLGHP-QSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVL 80 (214)
Q Consensus 2 ~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el 80 (214)
+...+.+++.+ ...+....+++.+|.+.+|.+||++|...+... +.++..+|...|.+.||.|.+.|+
T Consensus 36 l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~-----------E~~l~~~F~~iD~~hdG~i~~~Ei 104 (463)
T KOG0036|consen 36 LEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK-----------ELELYRIFQSIDLEHDGKIDPNEI 104 (463)
T ss_pred HHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-----------HHHHHHHHhhhccccCCccCHHHH
Confidence 45677888888 788899999999999999999999999988764 567889999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q psy4728 81 REIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAF 123 (214)
Q Consensus 81 ~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~ 123 (214)
...+..++..++.+++.+++..+|+++++.|+++||...+..+
T Consensus 105 ~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 105 WRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred HHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 9999999999999999999999999999999999998544443
No 24
>KOG0044|consensus
Probab=99.35 E-value=3.4e-11 Score=87.72 Aligned_cols=136 Identities=18% Similarity=0.280 Sum_probs=95.1
Q ss_pred HHHHHHHHHhHcCCC-CCceeHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCCCccHH
Q psy4728 57 RAELREAFMLYDREG-NGYITTDVLREIISELDPNL-DYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTD 134 (214)
Q Consensus 57 ~~~~~~~f~~~D~~~-~g~i~~~el~~~l~~l~~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~~g~i~~~ 134 (214)
..+++.+|+.|-.+. +|.++..+++.++....+.- +....+.+ |+.+|.+++|.|+..
T Consensus 25 ~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~v--------------------F~~fD~~~dg~i~F~ 84 (193)
T KOG0044|consen 25 KKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELV--------------------FRTFDKNKDGTIDFL 84 (193)
T ss_pred HHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHH--------------------HHHhcccCCCCcCHH
Confidence 456777777776554 89999999999998876532 23334444 455555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhccC-----CCHHHHHHHHHHHHHhcCccCCcee
Q psy4728 135 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEE-----ENPEAMRAELREAFMLYDREEFMSI 209 (214)
Q Consensus 135 e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~~-----~~~~~~~~~~~~~f~~~d~~~~g~i 209 (214)
||..+|..+.....++-+.-.|+.+|.+++|.|++.+++.+++....-.. +..+.-.+.....|+.+|.+++|.|
T Consensus 85 Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~l 164 (193)
T KOG0044|consen 85 EFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKL 164 (193)
T ss_pred HHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcc
Confidence 55555544444444555556699999999999999999999986544332 3344456778889999999999999
Q ss_pred eec
Q psy4728 210 MID 212 (214)
Q Consensus 210 ~~~ 212 (214)
|++
T Consensus 165 T~e 167 (193)
T KOG0044|consen 165 TLE 167 (193)
T ss_pred cHH
Confidence 974
No 25
>KOG2562|consensus
Probab=99.30 E-value=4.2e-11 Score=95.83 Aligned_cols=178 Identities=16% Similarity=0.264 Sum_probs=135.8
Q ss_pred HHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcC--CCCC----
Q psy4728 19 NEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELD--PNLD---- 92 (214)
Q Consensus 19 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~--~~~~---- 92 (214)
..+|..++.+..|.|+...|+..+..-... ....+.++++.++..+.+.+...+++..|..+- ++++
T Consensus 142 ~~~f~k~~~d~~g~it~~~Fi~~~~~~~~l-------~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~ 214 (493)
T KOG2562|consen 142 ASTFRKIDGDDTGHITRDKFINYWMRGLML-------THTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDE 214 (493)
T ss_pred hhhhhhhccCcCCceeHHHHHHHHHhhhhH-------HHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhcc
Confidence 578889999999999999999988865443 356777788888888889988888888887751 2211
Q ss_pred ---------HHHHHHHHHHhcCCCCCcccHHHHH------------------------------H---HHHhhCCCCCCC
Q psy4728 93 ---------YEELNEMIEEIDSDGSGTIDFDVLT------------------------------R---AFEAFDQEKKGS 130 (214)
Q Consensus 93 ---------~~~~~~~~~~~d~~~~g~i~~~ef~------------------------------~---~f~~~D~~~~g~ 130 (214)
...+.+++-.++....|+|+..+.+ . .|-.+|++++|.
T Consensus 215 ~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~l 294 (493)
T KOG2562|consen 215 EPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGL 294 (493)
T ss_pred ChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccc
Confidence 1113455555677788888877665 2 366779999999
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHh----CCCCCCceeHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHhcCccCC
Q psy4728 131 IPTDMVGTIMEMLGHPQSQEALNEIIKEV----DEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREEF 206 (214)
Q Consensus 131 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~----d~~~~~~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~ 206 (214)
|+.+++...-.. .++..-++.+|..+ -...+|+++|++|+.|+......+++ +.++.+|+++|.+++
T Consensus 295 idk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~------~SleYwFrclDld~~ 365 (493)
T KOG2562|consen 295 IDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTP------ASLEYWFRCLDLDGD 365 (493)
T ss_pred cCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCc------cchhhheeeeeccCC
Confidence 999999888543 35677888888833 34468999999999999885555444 588899999999999
Q ss_pred ceeeec
Q psy4728 207 MSIMID 212 (214)
Q Consensus 207 g~i~~~ 212 (214)
|.|+.+
T Consensus 366 G~Lt~~ 371 (493)
T KOG2562|consen 366 GILTLN 371 (493)
T ss_pred CcccHH
Confidence 999864
No 26
>KOG2643|consensus
Probab=99.30 E-value=5.4e-11 Score=94.56 Aligned_cols=170 Identities=16% Similarity=0.245 Sum_probs=128.3
Q ss_pred HHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCH---HHH
Q psy4728 20 EIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDY---EEL 96 (214)
Q Consensus 20 ~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~---~~~ 96 (214)
.+...|..++++++++++|..++..++. +.+..-|..+|+..+|.|+..+|..+|.......+. ..+
T Consensus 290 L~~yFFG~rg~~kLs~deF~~F~e~Lq~----------Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~l 359 (489)
T KOG2643|consen 290 LLTYFFGKRGNGKLSIDEFLKFQENLQE----------EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYL 359 (489)
T ss_pred HHHHhhccCCCccccHHHHHHHHHHHHH----------HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHH
Confidence 3445568899999999999999998753 456667999999999999999999988775422221 235
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhhC------------CCCCCCccHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCC
Q psy4728 97 NEMIEEIDSDGSGTIDFDVLTRAFEAFD------------QEKKGSIPTDMVGTIMEM-LGHPQSQEALNEIIKEVDEDG 163 (214)
Q Consensus 97 ~~~~~~~d~~~~g~i~~~ef~~~f~~~D------------~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~ 163 (214)
.++...++.+ +..|+++||...|+... ....+.|+..+|+++... .|.++++..++-+|..+|.|+
T Consensus 360 krvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~ 438 (489)
T KOG2643|consen 360 KRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENN 438 (489)
T ss_pred HHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCC
Confidence 5566666544 77899999987665432 136688999999999876 588999999999999999999
Q ss_pred CCceeHHHHHHHHHhhhhc--cCCCHHHHHHHHHHHHHh
Q psy4728 164 SGELEFNEFCTLAAKFLEE--EEENPEAMRAELREAFML 200 (214)
Q Consensus 164 ~~~i~~~eF~~~l~~~~~~--~~~~~~~~~~~~~~~f~~ 200 (214)
||.++++||+.++++.... .-+....+.+.++..+.+
T Consensus 439 Dg~LS~~EFl~Vmk~Rmhrgl~~p~~~gl~~~~~~v~kc 477 (489)
T KOG2643|consen 439 DGTLSHKEFLAVMKRRMHRGLELPKDTGLLRYMKAVKKC 477 (489)
T ss_pred CCcccHHHHHHHHHHHhhccccCCcccchHHHHHHHHHH
Confidence 9999999999999876555 233333344455544443
No 27
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.28 E-value=1.8e-11 Score=78.61 Aligned_cols=65 Identities=25% Similarity=0.386 Sum_probs=60.6
Q ss_pred HHHHHHHHhhCC-CCCCCccHHHHHHHHHH-cCCCCCH-HHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 114 DVLTRAFEAFDQ-EKKGSIPTDMVGTIMEM-LGHPQSQ-EALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 114 ~ef~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
...+.+|+.||+ +++|+|+..||+.++.. +|..+++ ++++.+++.+|.|++|.|+|.||+..+..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 456689999999 99999999999999999 8888888 99999999999999999999999999987
No 28
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.28 E-value=2.7e-11 Score=73.83 Aligned_cols=62 Identities=35% Similarity=0.728 Sum_probs=52.2
Q ss_pred HHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHH----HHHHHHhcCCCCCcccHHHHHHHH
Q psy4728 59 ELREAFMLYDREGNGYITTDVLREIISELDPNLDYEEL----NEMIEEIDSDGSGTIDFDVLTRAF 120 (214)
Q Consensus 59 ~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~----~~~~~~~d~~~~g~i~~~ef~~~f 120 (214)
+++.+|+.+|.+++|.|+.+||..++..++...+...+ +.++..+|.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47889999999999999999999999999877655444 455888888888888888887654
No 29
>KOG0034|consensus
Probab=99.22 E-value=7.1e-10 Score=80.76 Aligned_cols=95 Identities=22% Similarity=0.354 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHc---CCC-CCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCc-eeHHHHHHHHHHc
Q psy4728 13 QSQEALNEIIKEV---DED-GSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGY-ITTDVLREIISEL 87 (214)
Q Consensus 13 ~~~~~~~~l~~~~---d~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~-i~~~el~~~l~~l 87 (214)
++..|+..+...| +.+ +.|.++.++|..+......+ ...+++..++.+++|. |++++|.+.+..+
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np----------~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f 96 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNP----------LADRIIDRFDTDGNGDPVDFEEFVRLLSVF 96 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCc----------HHHHHHHHHhccCCCCccCHHHHHHHHhhh
Confidence 4444443333332 444 55555555555555332222 2233444444444444 5555555555444
Q ss_pred CCCCCHH-HHHHHHHHhcCCCCCcccHHHHH
Q psy4728 88 DPNLDYE-ELNEMIEEIDSDGSGTIDFDVLT 117 (214)
Q Consensus 88 ~~~~~~~-~~~~~~~~~d~~~~g~i~~~ef~ 117 (214)
..+.+.. .++-.++.||.+++|.|+.+++.
T Consensus 97 ~~~~~~~~Kl~faF~vYD~~~~G~I~reel~ 127 (187)
T KOG0034|consen 97 SPKASKREKLRFAFRVYDLDGDGFISREELK 127 (187)
T ss_pred cCCccHHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence 3333333 44444555555555555554443
No 30
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.20 E-value=1.1e-10 Score=71.16 Aligned_cols=60 Identities=32% Similarity=0.659 Sum_probs=52.4
Q ss_pred HHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHH----HHHHHHHHhCCCCCCceeHHHHHHHH
Q psy4728 117 TRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQE----ALNEIIKEVDEDGSGELEFNEFCTLA 176 (214)
Q Consensus 117 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~l~~~~d~~~~~~i~~~eF~~~l 176 (214)
..+|+.+|.+++|+|+.+||..++..++...++. .++.+++.+|.+++|.|+|+||++++
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4689999999999999999999999998766544 55555999999999999999999875
No 31
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.20 E-value=1.4e-10 Score=74.44 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhHcC-CCCCceeHHHHHHHHHH-cCCCCCH-HHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q psy4728 55 AMRAELREAFMLYDR-EGNGYITTDVLREIISE-LDPNLDY-EELNEMIEEIDSDGSGTIDFDVLTRAFEA 122 (214)
Q Consensus 55 ~~~~~~~~~f~~~D~-~~~g~i~~~el~~~l~~-l~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~f~~ 122 (214)
.....+..+|+.||+ +++|.|+..||+.++.. ++..++. .+++.++..+|.|++|.|+|+||+.+...
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 346788999999999 99999999999999999 8877887 89999999999999999999999876543
No 32
>KOG0377|consensus
Probab=99.19 E-value=9.2e-10 Score=87.82 Aligned_cols=121 Identities=20% Similarity=0.388 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhHcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCCCCCcccHHHHH-----------------
Q psy4728 56 MRAELREAFMLYDREGNGYITTDVLREIISEL-DPNLDYEELNEMIEEIDSDGSGTIDFDVLT----------------- 117 (214)
Q Consensus 56 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~----------------- 117 (214)
....+...|+.+|.+++|.|+...-..++..+ +..++=.-++ -.....+.+|.|.|.+.+
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~--~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slv 539 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLR--PKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLV 539 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhh--hhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHH
Confidence 45788889999999999999999998888773 4444322221 223345667888887665
Q ss_pred -----------HHHHhhCCCCCCCccHHHHHHHHHHc----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 118 -----------RAFEAFDQEKKGSIPTDMVGTIMEML----GHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 118 -----------~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.+|+.+|.+++|.|+.+||.++++-+ ...++++++.++.+.+|-|+||.|++.||+..++-
T Consensus 540 etLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 540 ETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 48999999999999999999998875 34678999999999999999999999999998874
No 33
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.16 E-value=2.7e-10 Score=73.21 Aligned_cols=65 Identities=23% Similarity=0.483 Sum_probs=60.0
Q ss_pred HHHHHHHHhhC-CCCCC-CccHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 114 DVLTRAFEAFD-QEKKG-SIPTDMVGTIMEM-----LGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 114 ~ef~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
..++.+|+.|| ++++| .|+..||+.+|.. ++...++++++.+++.+|.+++|+|+|.+|+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 45678999998 79999 5999999999999 888889999999999999999999999999999876
No 34
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.14 E-value=6.4e-10 Score=71.46 Aligned_cols=67 Identities=28% Similarity=0.506 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhHc-CCCCC-ceeHHHHHHHHHH-----cCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy4728 55 AMRAELREAFMLYD-REGNG-YITTDVLREIISE-----LDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFE 121 (214)
Q Consensus 55 ~~~~~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-----l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~ 121 (214)
.....+..+|+.|| ++++| .|+..+|+.+|+. ++..+++.+++.+++.+|.+++|.|+|++|+.+..
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 34678899999998 79999 6999999999999 89899999999999999999999999999987643
No 35
>KOG0751|consensus
Probab=99.11 E-value=9.4e-10 Score=88.85 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=117.7
Q ss_pred CCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCC---
Q psy4728 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDP--- 89 (214)
Q Consensus 13 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~--- 89 (214)
..++-+..+-...|..++|.|+++||+.+-..+|.+ ......+|..||+.++|.++.+++..++.+...
T Consensus 71 ~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p--------Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~ 142 (694)
T KOG0751|consen 71 FNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP--------DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHH 142 (694)
T ss_pred CChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc--------hHHHHHHHHHhcccCCCceehHHHHHHHhccccccC
Confidence 355556666666788999999999999999988887 467888999999999999999999999998532
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHH------------HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHH-
Q psy4728 90 NLDYEELNEMIEEIDSDGSGTIDFDVLT------------RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEII- 156 (214)
Q Consensus 90 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~------------~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~- 156 (214)
.+-..+.+.+-..+.......++|.+|. ++|+..|+.++|+|+.-+|+.++.....++....++..+
T Consensus 143 ~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv 222 (694)
T KOG0751|consen 143 IPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLV 222 (694)
T ss_pred CCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhh
Confidence 2222223334345555667889998886 578899999999999999999998876655555555544
Q ss_pred HHhCCCCCCceeHHHHHHH
Q psy4728 157 KEVDEDGSGELEFNEFCTL 175 (214)
Q Consensus 157 ~~~d~~~~~~i~~~eF~~~ 175 (214)
.....+..+++++..|..+
T Consensus 223 ~vagg~~~H~vSf~yf~af 241 (694)
T KOG0751|consen 223 SVAGGNDSHQVSFSYFNAF 241 (694)
T ss_pred hhcCCCCccccchHHHHHH
Confidence 4455556678888877644
No 36
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.09 E-value=8.7e-10 Score=70.83 Aligned_cols=64 Identities=16% Similarity=0.450 Sum_probs=57.7
Q ss_pred HHHHHHHhhCC-CC-CCCccHHHHHHHHHH---cCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 115 VLTRAFEAFDQ-EK-KGSIPTDMVGTIMEM---LGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 115 ef~~~f~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
..+.+|..||. ++ +|+|+.+||+.++.. +|..++++++..+++.+|.+++|+|+|.+|+.++..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 34578999997 66 899999999999963 688899999999999999999999999999999886
No 37
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.08 E-value=7.2e-10 Score=64.68 Aligned_cols=52 Identities=29% Similarity=0.585 Sum_probs=49.1
Q ss_pred CCCCccHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 127 KKGSIPTDMVGTIMEMLGHP-QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 127 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.+|.|+.++|+.+|..+|.. ++++++..++..+|.+++|.|+|.||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888998 99999999999999999999999999999875
No 38
>PLN02964 phosphatidylserine decarboxylase
Probab=99.06 E-value=3.4e-09 Score=90.34 Aligned_cols=100 Identities=17% Similarity=0.293 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcC-CCCCHHH---HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCCC
Q psy4728 55 AMRAELREAFMLYDREGNGYITTDVLREIISELD-PNLDYEE---LNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGS 130 (214)
Q Consensus 55 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~-~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~~g~ 130 (214)
.+...+.++|..+|++++|.+ +..++..++ ..++..+ ++.++..+| .+++|.
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D--------------------~DgdG~ 195 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVD--------------------YDEDGQ 195 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhC--------------------CCCCCe
Confidence 456889999999999999997 888888888 4666665 455555444 455555
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 131 IPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 131 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
|+.+||..++..++...+++++..+|+.+|.+++|.|+++||...+..
T Consensus 196 IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 196 LSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred EcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 555555555655666677888999999999999999999999998877
No 39
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.04 E-value=1.6e-09 Score=71.08 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q psy4728 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFD 124 (214)
Q Consensus 54 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D 124 (214)
......++.+|..+|.+++|.|+..++..+++.++ ++..++..++..++.+++|.|+|++|+.++....
T Consensus 6 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 6 PEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 45778999999999999999999999999999865 6888999999999999999999999998776543
No 40
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.02 E-value=1.9e-09 Score=70.44 Aligned_cols=66 Identities=24% Similarity=0.524 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhCC-CC-CCCccHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 113 FDVLTRAFEAFDQ-EK-KGSIPTDMVGTIMEM-----LGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 113 ~~ef~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
+..+..+|..+|. ++ +|.|+..|++.++.. ++..+++++++.+++.+|.+++|.|+|.+|+..+..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4567789999997 87 699999999999986 466789999999999999999999999999998876
No 41
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.00 E-value=5.4e-09 Score=68.00 Aligned_cols=65 Identities=29% Similarity=0.605 Sum_probs=57.3
Q ss_pred HHHHHHHHhhC-CCCCC-CccHHHHHHHHHH-cCC----CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 114 DVLTRAFEAFD-QEKKG-SIPTDMVGTIMEM-LGH----PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 114 ~ef~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~~----~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
+++..+|..|| ++++| .|+..||+.+|.. +|. ..++++++.+++.+|.+++|.|+|.+|+.++..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 45678999997 99999 5999999999975 443 458899999999999999999999999999887
No 42
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.00 E-value=3.7e-09 Score=69.05 Aligned_cols=68 Identities=15% Similarity=0.400 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhHcC-CC-CCceeHHHHHHHHHH-----cCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q psy4728 56 MRAELREAFMLYDR-EG-NGYITTDVLREIISE-----LDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAF 123 (214)
Q Consensus 56 ~~~~~~~~f~~~D~-~~-~g~i~~~el~~~l~~-----l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~ 123 (214)
....+..+|..||. ++ +|.|+..|++.++.. ++..++..+++.++..++.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35678999999997 87 699999999999986 4667899999999999999999999999998766543
No 43
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.99 E-value=5.7e-09 Score=67.87 Aligned_cols=66 Identities=20% Similarity=0.469 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhHc-CCCCC-ceeHHHHHHHHHH-cC----CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy4728 56 MRAELREAFMLYD-REGNG-YITTDVLREIISE-LD----PNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFE 121 (214)
Q Consensus 56 ~~~~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-l~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~ 121 (214)
-...++++|..|| .+++| .|+..+++.+++. ++ ..++..+++.++..+|.+++|.|+|++|+.+..
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 4577999999997 99999 5999999999986 43 356889999999999999999999999987654
No 44
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.98 E-value=4.1e-09 Score=68.59 Aligned_cols=65 Identities=22% Similarity=0.469 Sum_probs=56.3
Q ss_pred HHHHHHHHhhC-CCCCC-CccHHHHHHHHHHc-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 114 DVLTRAFEAFD-QEKKG-SIPTDMVGTIMEML-----GHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 114 ~ef~~~f~~~D-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
..++.+|..|| ++++| .|+..||+.++... +...++.+++.+++.+|.+++|.|+|.+|+.++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 45667899999 78998 59999999999762 33457889999999999999999999999999987
No 45
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.97 E-value=3.6e-09 Score=64.48 Aligned_cols=60 Identities=23% Similarity=0.369 Sum_probs=54.8
Q ss_pred HHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 117 TRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 117 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
..+|..+|++++|.|+..|+..++..++ .+++++..+++.++.+++|.|+|.+|+..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 3579999999999999999999999876 48889999999999999999999999998865
No 46
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.96 E-value=9.3e-09 Score=66.91 Aligned_cols=68 Identities=21% Similarity=0.409 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhHc-CCCCC-ceeHHHHHHHHHH-c----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q psy4728 55 AMRAELREAFMLYD-REGNG-YITTDVLREIISE-L----DPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEA 122 (214)
Q Consensus 55 ~~~~~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-l----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~ 122 (214)
.....+..+|..|| .+++| .|+..||+.++.. + ....+..++..++..+|.+++|.|+|+||+.++..
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 34577888999999 78998 5999999999976 3 33457788999999999999999999999876543
No 47
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.94 E-value=1.2e-08 Score=65.49 Aligned_cols=67 Identities=19% Similarity=0.401 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhHcC-CC-CCceeHHHHHHHHHH---cCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy4728 55 AMRAELREAFMLYDR-EG-NGYITTDVLREIISE---LDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFE 121 (214)
Q Consensus 55 ~~~~~~~~~f~~~D~-~~-~g~i~~~el~~~l~~---l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~ 121 (214)
.....+..+|..|+. ++ +|.|+..||+.+++. +|..++.+++..+++.+|.+++|.|+|++|+.+..
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 345678889999997 67 899999999999973 68899999999999999999999999999986543
No 48
>KOG0038|consensus
Probab=98.94 E-value=9.5e-09 Score=70.14 Aligned_cols=96 Identities=31% Similarity=0.561 Sum_probs=78.1
Q ss_pred HHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcC-CCCCHHHHH
Q psy4728 19 NEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELD-PNLDYEELN 97 (214)
Q Consensus 19 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~-~~~~~~~~~ 97 (214)
++|...+..++.|.+++++|+.++.-++.. .+..-++..+|+.+|-++++.|...++.++++.+. ..++..++.
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~-----APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~ 148 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEM-----APRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVE 148 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhh-----ChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHH
Confidence 467788889999999999999999887765 35566778899999999999999999999999974 467777765
Q ss_pred ----HHHHHhcCCCCCcccHHHHHHH
Q psy4728 98 ----EMIEEIDSDGSGTIDFDVLTRA 119 (214)
Q Consensus 98 ----~~~~~~d~~~~g~i~~~ef~~~ 119 (214)
+++..+|.+++|.+++.+|-.+
T Consensus 149 ~i~ekvieEAD~DgDgkl~~~eFe~~ 174 (189)
T KOG0038|consen 149 LICEKVIEEADLDGDGKLSFAEFEHV 174 (189)
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 4455667788888888777654
No 49
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.93 E-value=6e-09 Score=63.48 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=53.8
Q ss_pred HHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q psy4728 61 REAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEA 122 (214)
Q Consensus 61 ~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~ 122 (214)
+.+|..+|.+++|.|+..|+..++..++. +..++..++..++.+++|.|+|++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 56899999999999999999999998864 8888999999999999999999999876654
No 50
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.91 E-value=8.8e-09 Score=60.00 Aligned_cols=51 Identities=33% Similarity=0.592 Sum_probs=47.8
Q ss_pred CCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy4728 71 GNGYITTDVLREIISELDPN-LDYEELNEMIEEIDSDGSGTIDFDVLTRAFE 121 (214)
Q Consensus 71 ~~g~i~~~el~~~l~~l~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~ 121 (214)
.+|.|+.++|+.++..+|.. ++..+++.++..+|.+++|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47999999999999888999 9999999999999999999999999998775
No 51
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.91 E-value=1.1e-08 Score=65.91 Aligned_cols=68 Identities=16% Similarity=0.346 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhHcC--CCCCceeHHHHHHHHHH-cCCC----CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q psy4728 55 AMRAELREAFMLYDR--EGNGYITTDVLREIISE-LDPN----LDYEELNEMIEEIDSDGSGTIDFDVLTRAFEA 122 (214)
Q Consensus 55 ~~~~~~~~~f~~~D~--~~~g~i~~~el~~~l~~-l~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~ 122 (214)
.....++.+|..+|+ +++|.|+..++..++.. ++.. ++..++..++..++.+++|.|+|++|+.++..
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 456779999999999 89999999999999986 4543 35899999999999999999999999877654
No 52
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.89 E-value=1.4e-08 Score=66.59 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=57.7
Q ss_pred HHHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 114 DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 114 ~ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.++..+|..+|.+++|.|+..+++.++...+ ++++++..++..++.+++|.|+|++|+.++..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 4567899999999999999999999998865 78899999999999999999999999998875
No 53
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.88 E-value=1.2e-08 Score=65.85 Aligned_cols=65 Identities=23% Similarity=0.510 Sum_probs=57.7
Q ss_pred HHHHHHHHhhCC--CCCCCccHHHHHHHHHH-cCCC----CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 114 DVLTRAFEAFDQ--EKKGSIPTDMVGTIMEM-LGHP----QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 114 ~ef~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
+++..+|..+|+ +++|.|+..+|..++.. ++.. .+++++..++..++.+++|.|+|++|+..+..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 567789999999 89999999999999976 4543 35899999999999999999999999999987
No 54
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.86 E-value=2e-08 Score=59.71 Aligned_cols=60 Identities=38% Similarity=0.746 Sum_probs=56.1
Q ss_pred HHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy4728 117 TRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLA 176 (214)
Q Consensus 117 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l 176 (214)
..+|..+|.+++|.|+..++..++..++.+.+.+.+..++..++.+++|.|++.+|+.++
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 467899999999999999999999999999999999999999999999999999999875
No 55
>KOG4251|consensus
Probab=98.85 E-value=1.1e-07 Score=70.73 Aligned_cols=159 Identities=16% Similarity=0.252 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHc-CCC--
Q psy4728 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISEL-DPN-- 90 (214)
Q Consensus 14 ~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l-~~~-- 90 (214)
+...+..||+..|.+.+|+|+-.|..+++..-... .-+.....-+..|+..|++++|.|+..|+.--+.+. ++.
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaE---HfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsek 175 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAE---HFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEK 175 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHH---HHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchH
Confidence 34567889999999999999999999988754322 111223444557899999999999999986544432 110
Q ss_pred -------------C---------------------------CHH-----------------HHHHHHHHhcCCCCCcccH
Q psy4728 91 -------------L---------------------------DYE-----------------ELNEMIEEIDSDGSGTIDF 113 (214)
Q Consensus 91 -------------~---------------------------~~~-----------------~~~~~~~~~d~~~~g~i~~ 113 (214)
. +.. .+..++..+|.+++..++-
T Consensus 176 evadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSv 255 (362)
T KOG4251|consen 176 EVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSV 255 (362)
T ss_pred HHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecc
Confidence 0 000 0345555667777777777
Q ss_pred HHHH-------------------------HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcee
Q psy4728 114 DVLT-------------------------RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELE 168 (214)
Q Consensus 114 ~ef~-------------------------~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~ 168 (214)
.+|+ .+=..+|.+.+|.+|.+|+............-.++..++..-+.+++.+++
T Consensus 256 peFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls 335 (362)
T KOG4251|consen 256 PEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLS 335 (362)
T ss_pred hhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccC
Confidence 7776 133456778888888888777765555555555666677777777777777
Q ss_pred HHHHHHH
Q psy4728 169 FNEFCTL 175 (214)
Q Consensus 169 ~~eF~~~ 175 (214)
.++.+..
T Consensus 336 ~eell~r 342 (362)
T KOG4251|consen 336 LEELLER 342 (362)
T ss_pred HHHHHHH
Confidence 7776654
No 56
>KOG0751|consensus
Probab=98.84 E-value=5.3e-08 Score=78.99 Aligned_cols=146 Identities=20% Similarity=0.262 Sum_probs=105.9
Q ss_pred HHHHHHHHHHh---HcCCCCCceeHHHHHHHHHH-cCC-CCCHHHHHHHHHHhcCCCCCcccHHHHH-------------
Q psy4728 56 MRAELREAFML---YDREGNGYITTDVLREIISE-LDP-NLDYEELNEMIEEIDSDGSGTIDFDVLT------------- 117 (214)
Q Consensus 56 ~~~~~~~~f~~---~D~~~~g~i~~~el~~~l~~-l~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~------------- 117 (214)
...+++.+|.. .+.++...+++++|...... ++. .++++.++.+-...|..++|-|+|+||+
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~ 110 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALF 110 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHH
Confidence 34556666544 46778888999998665444 343 4455555555566678889999999998
Q ss_pred -HHHHhhCCCCCCCccHHHHHHHHHHcCCC--CC-HHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhccCCCHHHHHHH
Q psy4728 118 -RAFEAFDQEKKGSIPTDMVGTIMEMLGHP--QS-QEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAE 193 (214)
Q Consensus 118 -~~f~~~D~~~~g~i~~~e~~~~l~~~~~~--~~-~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~~~~~~~~~ 193 (214)
.+|..||+.++|.++.+++..++.....+ .+ +.+.+.+-..+.......++|.+|.+++..+..+ .
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E----------~ 180 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLE----------H 180 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHH----------H
Confidence 48999999999999999999999875321 11 1122222234444455679999999999987666 5
Q ss_pred HHHHHHhcCccCCceeee
Q psy4728 194 LREAFMLYDREEFMSIMI 211 (214)
Q Consensus 194 ~~~~f~~~d~~~~g~i~~ 211 (214)
..++|+..|+.++|.||.
T Consensus 181 ~~qafr~~d~~~ng~is~ 198 (694)
T KOG0751|consen 181 AEQAFREKDKAKNGFISV 198 (694)
T ss_pred HHHHHHHhcccCCCeeee
Confidence 788999999999999973
No 57
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.84 E-value=2.2e-08 Score=59.46 Aligned_cols=61 Identities=44% Similarity=0.813 Sum_probs=56.1
Q ss_pred HHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4728 60 LREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAF 120 (214)
Q Consensus 60 ~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f 120 (214)
+..+|..+|.+++|.|+..++..++..++...+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999997654
No 58
>KOG0038|consensus
Probab=98.83 E-value=2.2e-08 Score=68.37 Aligned_cols=83 Identities=30% Similarity=0.475 Sum_probs=68.7
Q ss_pred HHHHHHHhcCCCCCcccHHHHHH-----------------HHHhhCCCCCCCccHHHHHHHHHHcC-CCCCHHHHHHH--
Q psy4728 96 LNEMIEEIDSDGSGTIDFDVLTR-----------------AFEAFDQEKKGSIPTDMVGTIMEMLG-HPQSQEALNEI-- 155 (214)
Q Consensus 96 ~~~~~~~~d~~~~g~i~~~ef~~-----------------~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l-- 155 (214)
-++++..+..++.|.++|++|+. +|+.||-+++++|...++...+..+. ..+++++++.+
T Consensus 73 k~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~e 152 (189)
T KOG0038|consen 73 KRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICE 152 (189)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 45666777778888888888873 57788999999999999999998863 46888876555
Q ss_pred --HHHhCCCCCCceeHHHHHHHHHh
Q psy4728 156 --IKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 156 --~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
+..+|.+++|++++.+|-.++.+
T Consensus 153 kvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 153 KVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHhcCCCCCcccHHHHHHHHHh
Confidence 66789999999999999998875
No 59
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.83 E-value=3.2e-08 Score=63.65 Aligned_cols=64 Identities=19% Similarity=0.377 Sum_probs=54.9
Q ss_pred HHHHHHHh-hCCCCCC-CccHHHHHHHHHHc-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 115 VLTRAFEA-FDQEKKG-SIPTDMVGTIMEML-----GHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 115 ef~~~f~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.++.+|+. .|++++| .|+.+||+.++... +...++.+++.+++.+|.|++|.|+|.+|+.++..
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 44578888 6787875 99999999999875 34567889999999999999999999999999887
No 60
>KOG0377|consensus
Probab=98.83 E-value=5.1e-08 Score=78.07 Aligned_cols=112 Identities=21% Similarity=0.364 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhh----------------------------------hc-------C
Q psy4728 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE----------------------------------EE-------N 52 (214)
Q Consensus 14 ~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~----------------------------------~~-------~ 52 (214)
-..++.+-|+.+|.++.|.|+...|...+......- ++ .
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 356788889999999999999999988776442110 00 0
Q ss_pred hHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHc----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCC
Q psy4728 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISEL----DPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQ 125 (214)
Q Consensus 53 ~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~ 125 (214)
.......+..+|+..|.|++|.|+.+||+.+..-+ ...++..++.++...+|.|++|.|++.||+++|+..|+
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcc
Confidence 11223567789999999999999999999988764 45788899999999999999999999999999999886
No 61
>PLN02964 phosphatidylserine decarboxylase
Probab=98.82 E-value=1.3e-07 Score=80.82 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHH
Q psy4728 16 EALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEE 95 (214)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~ 95 (214)
+++...|..+|++++|.+ +..++..+-. ...++.....+..+|..+|.+++|.|+..||..++..++...+.++
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~--~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEE 216 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSI--EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANK 216 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHH
Confidence 566778889999999997 3333333320 0112233345899999999999999999999999998887778888
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q psy4728 96 LNEMIEEIDSDGSGTIDFDVLTRAFEAFD 124 (214)
Q Consensus 96 ~~~~~~~~d~~~~g~i~~~ef~~~f~~~D 124 (214)
+..++..+|.|++|.|+++|+..++....
T Consensus 217 L~eaFk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 217 KEELFKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred HHHHHHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 88888888888888888888887776653
No 62
>PF14658 EF-hand_9: EF-hand domain
Probab=98.75 E-value=6.4e-08 Score=57.60 Aligned_cols=60 Identities=28% Similarity=0.608 Sum_probs=56.6
Q ss_pred HHHhhCCCCCCCccHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCCC-CceeHHHHHHHHHh
Q psy4728 119 AFEAFDQEKKGSIPTDMVGTIMEMLGH-PQSQEALNEIIKEVDEDGS-GELEFNEFCTLAAK 178 (214)
Q Consensus 119 ~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-~~i~~~eF~~~l~~ 178 (214)
+|..+|.++.|.|...++...|+.++. ..++.+++.+...+|+++. |.|+++.|+..++.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 689999999999999999999999988 7889999999999999988 99999999999875
No 63
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.71 E-value=1.9e-07 Score=60.07 Aligned_cols=67 Identities=15% Similarity=0.291 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHh-HcCCCCC-ceeHHHHHHHHHHc-----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy4728 55 AMRAELREAFML-YDREGNG-YITTDVLREIISEL-----DPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFE 121 (214)
Q Consensus 55 ~~~~~~~~~f~~-~D~~~~g-~i~~~el~~~l~~l-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~ 121 (214)
.....+..+|.. +|.+++| .|+..||+.++..- +...++.++..++..+|.|++|.|+|+||+.+..
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 346778889998 7788876 99999999999885 3355678899999999999999999999987543
No 64
>KOG0040|consensus
Probab=98.71 E-value=2e-07 Score=84.04 Aligned_cols=116 Identities=18% Similarity=0.319 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCC-------HHHHHHHHHHhcCCCCCcccHHHHHH-------
Q psy4728 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLD-------YEELNEMIEEIDSDGSGTIDFDVLTR------- 118 (214)
Q Consensus 53 ~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~------- 118 (214)
++....++.-+|..||++.+|.++..+|+.||+.+|..++ ..++..++...|++.+|+|+..+|++
T Consensus 2248 tEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2248 TEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred CHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccc
Confidence 5667789999999999999999999999999999988662 34799999999999999999999984
Q ss_pred -----------HHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC--------CCCceeHHHHHHHH
Q psy4728 119 -----------AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDED--------GSGELEFNEFCTLA 176 (214)
Q Consensus 119 -----------~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--------~~~~i~~~eF~~~l 176 (214)
+|+.+|. +..+|+..++.+ .+|+++++..+..+.+- -...++|.+|++.+
T Consensus 2328 eNI~s~~eIE~AfraL~a-~~~yvtke~~~~-------~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2328 ENILSSEEIEDAFRALDA-GKPYVTKEELYQ-------NLTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred ccccchHHHHHHHHHhhc-CCccccHHHHHh-------cCCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 4555554 555555554443 35667777666655321 23458888888765
No 65
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.69 E-value=1.5e-07 Score=63.50 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4728 55 AMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAF 120 (214)
Q Consensus 55 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f 120 (214)
.....+..+|..+|.|++|.|+.+|+..+. ..+....+..++..+|.|++|.||++||...|
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 456788999999999999999999999876 34556778889999999999999999998877
No 66
>PF14658 EF-hand_9: EF-hand domain
Probab=98.68 E-value=1.3e-07 Score=56.32 Aligned_cols=60 Identities=23% Similarity=0.497 Sum_probs=55.7
Q ss_pred HHHhHcCCCCCceeHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCC-CcccHHHHHHHHHh
Q psy4728 63 AFMLYDREGNGYITTDVLREIISELDP-NLDYEELNEMIEEIDSDGS-GTIDFDVLTRAFEA 122 (214)
Q Consensus 63 ~f~~~D~~~~g~i~~~el~~~l~~l~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~f~~ 122 (214)
+|..||.++.|.|...++..+|++++. .+++.+++.+...+|+++. |.|+++.|+.+.+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 689999999999999999999999988 8999999999999999987 99999999877653
No 67
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.66 E-value=1.3e-07 Score=60.80 Aligned_cols=64 Identities=22% Similarity=0.433 Sum_probs=54.5
Q ss_pred HHHHHHHhhCCC--CCCCccHHHHHHHHH-HcCCCCC----HHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 115 VLTRAFEAFDQE--KKGSIPTDMVGTIME-MLGHPQS----QEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 115 ef~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
..+.+|..|+.. .+|.|+..||+.++. .++..++ +++++.++..+|.+++|.|+|.+|+..+..
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 345678888755 589999999999996 5565566 899999999999999999999999999886
No 68
>KOG2562|consensus
Probab=98.63 E-value=5.5e-07 Score=72.69 Aligned_cols=157 Identities=15% Similarity=0.269 Sum_probs=111.4
Q ss_pred HHHHHHHHHHcCCCCCcccchHHHHH-----HHHHHhhhhhcChH---HHHHHHHHH---HHhHcCCCCCceeHHHHHHH
Q psy4728 15 QEALNEIIKEVDEDGSGELEFNEFCT-----LAAKFLEEEEENPE---AMRAELREA---FMLYDREGNGYITTDVLREI 83 (214)
Q Consensus 15 ~~~~~~l~~~~d~~~~g~i~~~ef~~-----~~~~~~~~~~~~~~---~~~~~~~~~---f~~~D~~~~g~i~~~el~~~ 83 (214)
.-.++++|-.++....|.|...+... .+............ -..+.+..+ |-.+|+|++|.|+.+++...
T Consensus 224 ~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry 303 (493)
T KOG2562|consen 224 ETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRY 303 (493)
T ss_pred HHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHH
Confidence 34567888888999999998888754 22222222100000 001333444 66789999999999999887
Q ss_pred HHHcCCCCCHHHHHHHHHHh----cCCCCCcccHHHHH----------------HHHHhhCCCCCCCccHHHHHHHHHHc
Q psy4728 84 ISELDPNLDYEELNEMIEEI----DSDGSGTIDFDVLT----------------RAFEAFDQEKKGSIPTDMVGTIMEML 143 (214)
Q Consensus 84 l~~l~~~~~~~~~~~~~~~~----d~~~~g~i~~~ef~----------------~~f~~~D~~~~g~i~~~e~~~~l~~~ 143 (214)
-.. .++.--++++|++. -.-.+|.++|++|+ ..|+.+|.+++|.|+..|++.+....
T Consensus 304 ~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq 380 (493)
T KOG2562|consen 304 GDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQ 380 (493)
T ss_pred hcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHH
Confidence 754 35566788888833 33467889999998 37999999999999999999887663
Q ss_pred -------C-CCCC-HHHHHHHHHHhCCCCCCceeHHHHHH
Q psy4728 144 -------G-HPQS-QEALNEIIKEVDEDGSGELEFNEFCT 174 (214)
Q Consensus 144 -------~-~~~~-~~~~~~l~~~~d~~~~~~i~~~eF~~ 174 (214)
+ ..++ ++.+.+++..+.+...++|++.+|.+
T Consensus 381 ~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 381 LQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred HHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 2 2233 56778888888877788999999875
No 69
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.62 E-value=1.5e-07 Score=63.39 Aligned_cols=58 Identities=17% Similarity=0.373 Sum_probs=50.1
Q ss_pred HHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 117 TRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 117 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.-+|..+|.+++|.|+..|+..+. ....+..+..++..+|.|++|.||++||+.++..
T Consensus 51 ~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 51 GWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 357999999999999999999876 2234677889999999999999999999999943
No 70
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.54 E-value=6.1e-07 Score=57.70 Aligned_cols=67 Identities=13% Similarity=0.314 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhHcCC--CCCceeHHHHHHHHH-HcCCCCC----HHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q psy4728 56 MRAELREAFMLYDRE--GNGYITTDVLREIIS-ELDPNLD----YEELNEMIEEIDSDGSGTIDFDVLTRAFEA 122 (214)
Q Consensus 56 ~~~~~~~~f~~~D~~--~~g~i~~~el~~~l~-~l~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~ 122 (214)
....+...|+.++.. .+|.|+..||+.++. .++..++ ..+++.++..+|.+++|.|+|++|+.++..
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 456778889999865 479999999999997 4555565 899999999999999999999999876543
No 71
>KOG0041|consensus
Probab=98.51 E-value=6.6e-07 Score=64.54 Aligned_cols=78 Identities=23% Similarity=0.407 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCCCccH
Q psy4728 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPT 133 (214)
Q Consensus 54 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~~g~i~~ 133 (214)
..++..+..+|+.+|.+.||.|+..|++.++.+||-+-+---+..++...|.|.+|.|+|-+|+.+|+.--. |.+..
T Consensus 95 rkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa---gEL~~ 171 (244)
T KOG0041|consen 95 RKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA---GELQE 171 (244)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc---ccccc
Confidence 346778889999999999999999999999999998888888999999999999999999999999876532 55544
Q ss_pred H
Q psy4728 134 D 134 (214)
Q Consensus 134 ~ 134 (214)
+
T Consensus 172 d 172 (244)
T KOG0041|consen 172 D 172 (244)
T ss_pred c
Confidence 3
No 72
>KOG4251|consensus
Probab=98.45 E-value=8e-07 Score=66.19 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHc---CCCCCHHHHHHHHHHhcCCCCCcccHHHHH--------------
Q psy4728 55 AMRAELREAFMLYDREGNGYITTDVLREIISEL---DPNLDYEELNEMIEEIDSDGSGTIDFDVLT-------------- 117 (214)
Q Consensus 55 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~-------------- 117 (214)
.....+..+|.+.|-+.+|.|+..|+.+.+..- ...-+..+....|+..|++++|.|+|++|.
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 456789999999999999999999998877652 111223344556777899999999999996
Q ss_pred ----------------HHHHhhCCCCCCC---------ccHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCceeHHH
Q psy4728 118 ----------------RAFEAFDQEKKGS---------IPTDMVGTIMEML-GHPQSQEALNEIIKEVDEDGSGELEFNE 171 (214)
Q Consensus 118 ----------------~~f~~~D~~~~g~---------i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~e 171 (214)
+.+..-+++..|. ++..||..+|..- ...+--.-+..++..+|.+++.+++-.+
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 2343334444444 3447777665332 1122344567778889999999999999
Q ss_pred HHHHHHhhhhc-cCC-CHHHHHHHHHHHH-HhcCccCCceeee
Q psy4728 172 FCTLAAKFLEE-EEE-NPEAMRAELREAF-MLYDREEFMSIMI 211 (214)
Q Consensus 172 F~~~l~~~~~~-~~~-~~~~~~~~~~~~f-~~~d~~~~g~i~~ 211 (214)
|++..-.-..+ ..+ ...-+.+.-++-| ..+|.+-+|++|.
T Consensus 258 FislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTa 300 (362)
T KOG4251|consen 258 FISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTA 300 (362)
T ss_pred hhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeH
Confidence 99765210000 011 1112222222333 5789999999875
No 73
>KOG0041|consensus
Probab=98.37 E-value=3.2e-06 Score=61.08 Aligned_cols=90 Identities=31% Similarity=0.396 Sum_probs=68.1
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhccCCCHHHHHHHH
Q psy4728 115 VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAEL 194 (214)
Q Consensus 115 ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~~~~~~~~~~ 194 (214)
.+..+|..||.+.+|+|+..||+.+|..+|.+-+---+..+++.+|.|.+|+|+|.+|+-.++....-.-.. .+.+
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~----ds~~ 175 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQE----DSGL 175 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcccccc----chHH
Confidence 344799999999999999999999999999887777788999999999999999999988776533321111 2333
Q ss_pred HHHHHh--cCccCCce
Q psy4728 195 REAFML--YDREEFMS 208 (214)
Q Consensus 195 ~~~f~~--~d~~~~g~ 208 (214)
..+-+. +|....|+
T Consensus 176 ~~LAr~~eVDVskeGV 191 (244)
T KOG0041|consen 176 LRLARLSEVDVSKEGV 191 (244)
T ss_pred HHHHHhcccchhhhhh
Confidence 333333 66666664
No 74
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.35 E-value=1e-06 Score=43.99 Aligned_cols=29 Identities=38% Similarity=0.787 Sum_probs=23.9
Q ss_pred HHHHHHHhHcCCCCCceeHHHHHHHHHHc
Q psy4728 59 ELREAFMLYDREGNGYITTDVLREIISEL 87 (214)
Q Consensus 59 ~~~~~f~~~D~~~~g~i~~~el~~~l~~l 87 (214)
+++.+|+.+|+|++|.|+.+||..++.++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 36778889999999999999998888753
No 75
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.33 E-value=1.3e-05 Score=51.18 Aligned_cols=62 Identities=26% Similarity=0.470 Sum_probs=51.2
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 116 LTRAFEAFDQEKKGSIPTDMVGTIMEM-----LGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 116 f~~~f~~~D~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.+.+|..|. ...+.++..||+..+.. ++..-.+..++.+++.+|.|+||.|+|.||+..+..
T Consensus 10 lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 10 MMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 446677777 55678999999999865 234457889999999999999999999999999886
No 76
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.29 E-value=1.2e-06 Score=43.68 Aligned_cols=28 Identities=39% Similarity=0.792 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCCCCcccchHHHHHHHHH
Q psy4728 17 ALNEIIKEVDEDGSGELEFNEFCTLAAK 44 (214)
Q Consensus 17 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 44 (214)
|++.+|+.+|.|++|.|+++||+.++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999999875
No 77
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.18 E-value=4e-06 Score=42.64 Aligned_cols=30 Identities=43% Similarity=0.904 Sum_probs=25.8
Q ss_pred HHHHHHHhHcCCCCCceeHHHHHHHHH-HcC
Q psy4728 59 ELREAFMLYDREGNGYITTDVLREIIS-ELD 88 (214)
Q Consensus 59 ~~~~~f~~~D~~~~g~i~~~el~~~l~-~l~ 88 (214)
+++.+|+.+|.+++|.|+..||..++. ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467899999999999999999999998 564
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.04 E-value=7.9e-06 Score=41.53 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=23.0
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHH-HcC
Q psy4728 115 VLTRAFEAFDQEKKGSIPTDMVGTIME-MLG 144 (214)
Q Consensus 115 ef~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 144 (214)
++..+|+.+|.+++|+|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 355788888888888888888888887 454
No 79
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.99 E-value=7.7e-05 Score=47.72 Aligned_cols=63 Identities=14% Similarity=0.347 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhHcCCCCCceeHHHHHHHHHH-----cCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHH
Q psy4728 56 MRAELREAFMLYDREGNGYITTDVLREIISE-----LDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRA 119 (214)
Q Consensus 56 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~-----l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 119 (214)
-...+..+|..|.. ..+.++..||+..+.+ +...-++..++.++...|.|++|.|+|.||+.+
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~L 73 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSL 73 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 35667778998873 4679999999999976 244556788999999999999999999999854
No 80
>KOG0040|consensus
Probab=97.99 E-value=7.3e-05 Score=68.36 Aligned_cols=89 Identities=21% Similarity=0.369 Sum_probs=72.3
Q ss_pred ccHHHHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCC--CHH-----HHHHHHHHhCCCCCCceeHHHHHHHHHhhhhcc
Q psy4728 111 IDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQ--SQE-----ALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE 183 (214)
Q Consensus 111 i~~~ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~-----~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~ 183 (214)
=.+.||.-+|..||++.+|.++..+|+..|+.+|..+ .++ .++.++..+|++.+|+|+..+|.+|+....-+-
T Consensus 2250 e~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeN 2329 (2399)
T KOG0040|consen 2250 EQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETEN 2329 (2399)
T ss_pred HHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccc
Confidence 3467899999999999999999999999999998755 233 899999999999999999999999998733222
Q ss_pred CCCHHHHHHHHHHHHHhcCc
Q psy4728 184 EENPEAMRAELREAFMLYDR 203 (214)
Q Consensus 184 ~~~~~~~~~~~~~~f~~~d~ 203 (214)
-.. ...+..+|+..|.
T Consensus 2330 I~s----~~eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2330 ILS----SEEIEDAFRALDA 2345 (2399)
T ss_pred ccc----hHHHHHHHHHhhc
Confidence 222 2366778888887
No 81
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.95 E-value=8.4e-05 Score=49.12 Aligned_cols=62 Identities=24% Similarity=0.420 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy4728 113 FDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAA 177 (214)
Q Consensus 113 ~~ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~ 177 (214)
...|..+|...+. ++|.|+..+...++...+ ++.+.+..++...|.+++|.+++.||+-.+.
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 4567789999985 689999999999998765 7789999999999999999999999998775
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.93 E-value=6.6e-05 Score=42.24 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=40.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 131 IPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 131 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
++..|++.+|+.+...++++.+..+|+.+|.+++|.+.-+||..|++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999875
No 83
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.92 E-value=6.5e-05 Score=49.63 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q psy4728 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAF 123 (214)
Q Consensus 54 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~ 123 (214)
+.+...+..+|..+++ ++|.|+..+.+.++... .++...+..++...|.+++|.++++||+-+...+
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 3456788999999985 58999999999999875 5788999999999999999999999998766554
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.92 E-value=3.3e-05 Score=43.42 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=36.7
Q ss_pred CHHHHHHHcCCCCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHH
Q psy4728 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKF 45 (214)
Q Consensus 1 e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 45 (214)
|++.+|+.+++.+++.-+..+|+.+|.+++|.++-+||..++..+
T Consensus 6 Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 6 EVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 468899999999999999999999999999999999999987654
No 85
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.83 E-value=3.7e-05 Score=36.89 Aligned_cols=25 Identities=28% Similarity=0.743 Sum_probs=20.5
Q ss_pred HHHHHHhHcCCCCCceeHHHHHHHH
Q psy4728 60 LREAFMLYDREGNGYITTDVLREII 84 (214)
Q Consensus 60 ~~~~f~~~D~~~~g~i~~~el~~~l 84 (214)
|+.+|+.+|.|++|.|+..|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4568889999999999999988753
No 86
>KOG0169|consensus
Probab=97.75 E-value=0.0011 Score=57.36 Aligned_cols=152 Identities=16% Similarity=0.253 Sum_probs=113.8
Q ss_pred CCCCCcccchHHHHHHHHHHhhhhh--cChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 26 DEDGSGELEFNEFCTLAAKFLEEEE--ENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEI 103 (214)
Q Consensus 26 d~~~~g~i~~~ef~~~~~~~~~~~~--~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~ 103 (214)
|...++.=+..-++..+..+..... .........+..+|..+|++++|.++..+...++..+...+....+..+++..
T Consensus 102 dl~a~s~~~a~~wV~gl~~l~s~~~~~~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~ 181 (746)
T KOG0169|consen 102 DLIANSKEDANIWVSGLRKLISRSKSMRQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKES 181 (746)
T ss_pred cccCCCHHHHHHHhhhHHHHHhccchhhhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4434444344444444444432221 11234567889999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHH-------------HHHhhCCCCCCCccHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCC----CC
Q psy4728 104 DSDGSGTIDFDVLTR-------------AFEAFDQEKKGSIPTDMVGTIMEMLG--HPQSQEALNEIIKEVDED----GS 164 (214)
Q Consensus 104 d~~~~g~i~~~ef~~-------------~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~----~~ 164 (214)
+...++.+...+|.. .|..+- ++.+.++..++..+|...+ ...+.+.++.+++.+-.. ..
T Consensus 182 ~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~s-~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~ 260 (746)
T KOG0169|consen 182 DNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQYS-HGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRH 260 (746)
T ss_pred HhhccceehHHHHHHHHHhhccCchHHHHHHHHh-CCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhcccc
Confidence 888899999988874 344443 3489999999999998874 357788899998887433 34
Q ss_pred CceeHHHHHHHHHh
Q psy4728 165 GELEFNEFCTLAAK 178 (214)
Q Consensus 165 ~~i~~~eF~~~l~~ 178 (214)
+.++++.|..||-.
T Consensus 261 ~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 261 GLLSLDGFTRYLFS 274 (746)
T ss_pred ceecHHHHHHHhcC
Confidence 56999999999975
No 87
>KOG0046|consensus
Probab=97.63 E-value=0.00025 Score=58.61 Aligned_cols=72 Identities=24% Similarity=0.425 Sum_probs=61.4
Q ss_pred cChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCC---CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q psy4728 51 ENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPN---LDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAF 123 (214)
Q Consensus 51 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~ 123 (214)
..+......++..|...| +++|.|+..++..++.+.+.. ...++++.++...+.+.+|.|+|++|+.+|.-.
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 345667889999999999 999999999999999987554 357889999999999999999999999866544
No 88
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.58 E-value=0.00034 Score=57.15 Aligned_cols=52 Identities=23% Similarity=0.477 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4728 56 MRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAF 120 (214)
Q Consensus 56 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f 120 (214)
....+..+|+.+|.+++|.|+..|+.. +..+|..+|.|++|.|+++||..++
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 345566666666666666666666632 2445666666666666666666543
No 89
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.58 E-value=0.00038 Score=56.90 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=47.0
Q ss_pred CCcccHHHH-HHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 108 SGTIDFDVL-TRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 108 ~g~i~~~ef-~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.|...++.. ..+|+.+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...+..
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 445555444 3689999999999999999842 477899999999999999999998875
No 90
>KOG1029|consensus
Probab=97.55 E-value=0.0011 Score=57.25 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=50.9
Q ss_pred HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy4728 118 RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLA 176 (214)
Q Consensus 118 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l 176 (214)
+.|..+|+...|+++...-+.+|...+ ++...+..|+...|.|+||+++-+||+-.+
T Consensus 199 QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 199 QLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred HHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 689999999999999999999986654 677789999999999999999999998654
No 91
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.54 E-value=0.00014 Score=34.89 Aligned_cols=25 Identities=36% Similarity=0.776 Sum_probs=22.1
Q ss_pred HHHHHHHcCCCCCcccchHHHHHHH
Q psy4728 18 LNEIIKEVDEDGSGELEFNEFCTLA 42 (214)
Q Consensus 18 ~~~l~~~~d~~~~g~i~~~ef~~~~ 42 (214)
++++|+.+|.|++|.|+.+||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 92
>KOG4666|consensus
Probab=97.38 E-value=0.00022 Score=55.58 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHH
Q psy4728 16 EALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISE 86 (214)
Q Consensus 16 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 86 (214)
+.++.+|..||.+++|.+||.+.+....-++.+ .-....|+.+|+.|+-+.||.++.++|.-+++.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p-----~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGP-----PVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCC-----CCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 345666777777777777777766666655544 223455666677777777777776666666654
No 93
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.17 E-value=0.0002 Score=48.17 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHH
Q psy4728 56 MRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLT 117 (214)
Q Consensus 56 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 117 (214)
....+.-.|..+|.++||.|+..|+..+...+ .+...=+..++..+|.|++|.|+..||.
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 45677888999999999999999998887655 3444457888999999999999999985
No 94
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.10 E-value=0.00016 Score=48.68 Aligned_cols=55 Identities=16% Similarity=0.408 Sum_probs=40.0
Q ss_pred HHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy4728 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175 (214)
Q Consensus 119 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~ 175 (214)
.|..+|.+++|.|+..|+..+...+ .-++.-+...++..|.|+++.|++.||..+
T Consensus 59 ~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 59 KFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 5889999999999999998886544 234556788999999999999999999864
No 95
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.07 E-value=0.028 Score=40.27 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=82.2
Q ss_pred HHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHh-------------------------c-------
Q psy4728 57 RAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEI-------------------------D------- 104 (214)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~-------------------------d------- 104 (214)
...+++-..-||+|+||.|.+.|-..-++.+|..+--.-+..++-.. .
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 34567777789999999999999999999988765433332222111 0
Q ss_pred -CCCCCcccHHHHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCC-------CHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy4728 105 -SDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQ-------SQEALNEIIKEVDEDGSGELEFNEFCTLA 176 (214)
Q Consensus 105 -~~~~g~i~~~ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~l~~~~d~~~~~~i~~~eF~~~l 176 (214)
-|..|...-+.|-++|..+++.+.+.+|..|+.++++...... +.-|+..++..+ .+.+|.+..+.-..+.
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 1134445556777899999999999999999999998743321 234566666665 6778888777655443
No 96
>KOG1029|consensus
Probab=96.97 E-value=0.0048 Score=53.56 Aligned_cols=72 Identities=22% Similarity=0.405 Sum_probs=61.3
Q ss_pred HHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCCC
Q psy4728 57 RAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGS 130 (214)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~~g~ 130 (214)
..+.+..|+.+|+..+|.++-..-+.+|... .++...+..|+..-|.|+||.++-+||+-+...+|....|.
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~sGq 265 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAKSGQ 265 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHhcCC
Confidence 4678889999999999999999999999765 46777889999999999999999999997777776555543
No 97
>KOG4065|consensus
Probab=96.79 E-value=0.0062 Score=40.33 Aligned_cols=57 Identities=23% Similarity=0.369 Sum_probs=42.6
Q ss_pred HHHHhHcCCCCCceeHHHHHHHHHHc------CC----CCCHHHHHHHHH----HhcCCCCCcccHHHHHH
Q psy4728 62 EAFMLYDREGNGYITTDVLREIISEL------DP----NLDYEELNEMIE----EIDSDGSGTIDFDVLTR 118 (214)
Q Consensus 62 ~~f~~~D~~~~g~i~~~el~~~l~~l------~~----~~~~~~~~~~~~----~~d~~~~g~i~~~ef~~ 118 (214)
.+|+..|.|+++.|+--|+.++++.. |+ .++..++..++. .-|.|++|.|+|-||+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 47899999999999999999999875 22 234556555544 44677888888888864
No 98
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.72 E-value=0.0059 Score=38.58 Aligned_cols=60 Identities=15% Similarity=0.313 Sum_probs=48.3
Q ss_pred HHHHhhCCCCCCCccHHHHHHHHHHcC-C-CCCHHHHHHHHHHhCCC----CCCceeHHHHHHHHHh
Q psy4728 118 RAFEAFDQEKKGSIPTDMVGTIMEMLG-H-PQSQEALNEIIKEVDED----GSGELEFNEFCTLAAK 178 (214)
Q Consensus 118 ~~f~~~D~~~~g~i~~~e~~~~l~~~~-~-~~~~~~~~~l~~~~d~~----~~~~i~~~eF~~~l~~ 178 (214)
.+|..+.. +.+.||.++|..+|.... . ..+.+.+..++..+..+ ..+.+++++|..||.+
T Consensus 4 ~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 4 EIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 56777754 788999999999997653 3 46899999999887544 4689999999999987
No 99
>KOG4065|consensus
Probab=96.68 E-value=0.0091 Score=39.54 Aligned_cols=58 Identities=24% Similarity=0.407 Sum_probs=44.6
Q ss_pred HHHHhhCCCCCCCccHHHHHHHHHHc------CC---C-CCHHHHHHHHHH----hCCCCCCceeHHHHHHH
Q psy4728 118 RAFEAFDQEKKGSIPTDMVGTIMEML------GH---P-QSQEALNEIIKE----VDEDGSGELEFNEFCTL 175 (214)
Q Consensus 118 ~~f~~~D~~~~g~i~~~e~~~~l~~~------~~---~-~~~~~~~~l~~~----~d~~~~~~i~~~eF~~~ 175 (214)
..|..+|-+++|.|+.-|+..++... |. + +++.++..++.. -|-|++|.|+|.||++.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 46888999999999999999888754 21 2 356666666554 57789999999999875
No 100
>KOG4666|consensus
Probab=96.67 E-value=0.005 Score=48.25 Aligned_cols=59 Identities=14% Similarity=0.267 Sum_probs=36.0
Q ss_pred HHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 119 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
+|+.|+.+.+|.+...+|--+|... .++..-.+..+|...+...+++|+|.+|.+++..
T Consensus 301 afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 301 AFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred HHHhcccccccccchHHHHHHHHHh-cCcceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 5666666667776666665555442 2233334455666666666777777777777653
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.65 E-value=0.0033 Score=30.15 Aligned_cols=27 Identities=33% Similarity=0.817 Sum_probs=21.4
Q ss_pred HHHHHHhHcCCCCCceeHHHHHHHHHH
Q psy4728 60 LREAFMLYDREGNGYITTDVLREIISE 86 (214)
Q Consensus 60 ~~~~f~~~D~~~~g~i~~~el~~~l~~ 86 (214)
++.+|..+|.+++|.|+..++..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456788888888888888888887764
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.50 E-value=0.0034 Score=30.10 Aligned_cols=28 Identities=36% Similarity=0.682 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCCCCcccchHHHHHHHHH
Q psy4728 17 ALNEIIKEVDEDGSGELEFNEFCTLAAK 44 (214)
Q Consensus 17 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 44 (214)
++..+|+.+|.+++|.|++.+|..++..
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3578999999999999999999988764
No 103
>KOG0046|consensus
Probab=96.48 E-value=0.014 Score=48.71 Aligned_cols=65 Identities=25% Similarity=0.440 Sum_probs=54.3
Q ss_pred HHHHHhhCCCCCCCccHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhc
Q psy4728 117 TRAFEAFDQEKKGSIPTDMVGTIMEMLGHP---QSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEE 182 (214)
Q Consensus 117 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~ 182 (214)
...|...| +++|+|+..++..++...+.. ...+++..++...+++.+|+|+|++|+..+.+....
T Consensus 22 ~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 22 KEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred HHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 35678888 999999999999999887654 358899999999999999999999999977664433
No 104
>KOG1707|consensus
Probab=96.46 E-value=0.03 Score=47.53 Aligned_cols=117 Identities=15% Similarity=0.297 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCCC-----CCcccHHHHH---------
Q psy4728 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISE-LDPNLDYEELNEMIEEIDSDG-----SGTIDFDVLT--------- 117 (214)
Q Consensus 53 ~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~-l~~~~~~~~~~~~~~~~d~~~-----~g~i~~~ef~--------- 117 (214)
.+.-...+.++|...|.|.+|.++-.|+-..=.. ++.++...++..+....+..- .+.++...|+
T Consensus 190 kp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfier 269 (625)
T KOG1707|consen 190 KPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIER 269 (625)
T ss_pred cHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHh
Confidence 4556788999999999999999999988766554 677777777666554442211 2223333333
Q ss_pred -------------------------------------------------HHHHhhCCCCCCCccHHHHHHHHHHcCCCC-
Q psy4728 118 -------------------------------------------------RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQ- 147 (214)
Q Consensus 118 -------------------------------------------------~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~- 147 (214)
.+|..||.+++|-++..|++.+....+...
T Consensus 270 gr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW 349 (625)
T KOG1707|consen 270 GRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPW 349 (625)
T ss_pred ccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCC
Confidence 589999999999999999999998864321
Q ss_pred ---CHHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy4728 148 ---SQEALNEIIKEVDEDGSGELEFNEFCTL 175 (214)
Q Consensus 148 ---~~~~~~~l~~~~d~~~~~~i~~~eF~~~ 175 (214)
...+.. -.+..|.++|..|++.
T Consensus 350 ~~~~~~~~t------~~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 350 TSSPYKDST------VKNERGWLTLNGFLSQ 374 (625)
T ss_pred CCCcccccc------eecccceeehhhHHHH
Confidence 111110 1235677888887754
No 105
>KOG0169|consensus
Probab=96.05 E-value=0.27 Score=43.12 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCH
Q psy4728 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDY 93 (214)
Q Consensus 14 ~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~ 93 (214)
.+..+..+|...|.+++|.+++.+-..+...+... -....+...|+..+...++.+...++......+...+
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~------l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp-- 205 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQ------LSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP-- 205 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHh------hhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc--
Confidence 56788999999999999999999999888776433 3456777788877888899999999999988876555
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q psy4728 94 EELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIM 140 (214)
Q Consensus 94 ~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~~g~i~~~e~~~~l 140 (214)
++..++..+..+ .+.++.++++.++..- .+.+.++.++..+++
T Consensus 206 -ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~--q~e~~~~~~~ae~ii 248 (746)
T KOG0169|consen 206 -EVYFLFVQYSHG-KEYLSTDDLLRFLEEE--QGEDGATLDEAEEII 248 (746)
T ss_pred -hHHHHHHHHhCC-CCccCHHHHHHHHHHh--cccccccHHHHHHHH
Confidence 677777777544 6777777766544443 333334444444444
No 106
>KOG1955|consensus
Probab=95.92 E-value=0.029 Score=46.57 Aligned_cols=75 Identities=21% Similarity=0.338 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCCC
Q psy4728 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGS 130 (214)
Q Consensus 54 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~~g~ 130 (214)
.++.+.+-.-|+..-+|-+|.|+-.--++++.+. +++-.++..|+...|.+.+|-+++.||+.+|...-.-++|+
T Consensus 227 ~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgy 301 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGY 301 (737)
T ss_pred HHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCC
Confidence 4566777778888999999999999999999874 57788999999999999999999999999998876666665
No 107
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.60 E-value=0.062 Score=33.81 Aligned_cols=61 Identities=28% Similarity=0.521 Sum_probs=46.2
Q ss_pred HHHHHHHhHcCCCCCceeHHHHHHHHHHcCC--CCCHHHHHHHHHHhcCC----CCCcccHHHHHHHH
Q psy4728 59 ELREAFMLYDREGNGYITTDVLREIISELDP--NLDYEELNEMIEEIDSD----GSGTIDFDVLTRAF 120 (214)
Q Consensus 59 ~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~--~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~f 120 (214)
.+..+|..+.. +.+.|+.++|...|..-.. ..+...+..++..+.++ ..+.++++.|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 36778999955 7899999999999987643 45889999999887543 35667777765543
No 108
>KOG1955|consensus
Probab=95.06 E-value=0.057 Score=44.90 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=54.4
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 115 VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 115 ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
=|++.|+.+..|-.|+|+..--+.++.... ++-.++..||...|.+.||.+++.|||..+.-
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 356789999999999999999898886644 66778999999999999999999999999864
No 109
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.11 E-value=0.79 Score=32.62 Aligned_cols=66 Identities=15% Similarity=0.354 Sum_probs=49.9
Q ss_pred HHhhCCCCCCCccHHHHHHHHHHcC---CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhccCC
Q psy4728 120 FEAFDQEKKGSIPTDMVGTIMEMLG---HPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEE 185 (214)
Q Consensus 120 f~~~D~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~ 185 (214)
|..|-+.....|+...|..+++..+ -.++..+++.+|..+...+...|+|++|..+|.........
T Consensus 8 f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~ 76 (154)
T PF05517_consen 8 FASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGK 76 (154)
T ss_dssp HHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSC
T ss_pred HHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhc
Confidence 3334467777899999999999864 35899999999999866667789999999999875555444
No 110
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.59 E-value=0.67 Score=33.00 Aligned_cols=79 Identities=11% Similarity=0.309 Sum_probs=52.4
Q ss_pred HHHhHcCCCCCceeHHHHHHHHHHc---CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCC-CccHHHHHH
Q psy4728 63 AFMLYDREGNGYITTDVLREIISEL---DPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKG-SIPTDMVGT 138 (214)
Q Consensus 63 ~f~~~D~~~~g~i~~~el~~~l~~l---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~~g-~i~~~e~~~ 138 (214)
.|..|.+.+...++...|.++++.. +..++...++-+|..+-..+...|+|++|+.++..+...... .-+.+++..
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~~~~~~~~ 86 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKSSAEELKE 86 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCTHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3333446667889999999999985 446899999999999876667789999998776654211111 005666666
Q ss_pred HHH
Q psy4728 139 IME 141 (214)
Q Consensus 139 ~l~ 141 (214)
.|.
T Consensus 87 kl~ 89 (154)
T PF05517_consen 87 KLT 89 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 111
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.08 E-value=0.062 Score=32.57 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC-------CCceeHHHHHH
Q psy4728 113 FDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDG-------SGELEFNEFCT 174 (214)
Q Consensus 113 ~~ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~-------~~~i~~~eF~~ 174 (214)
-++.+.+|+.+ .++.++||..||++.|. ++.++.+...+.... .|.++|..|+.
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 36677889999 78999999999999953 333466666653322 36799998875
No 112
>KOG3866|consensus
Probab=92.97 E-value=0.55 Score=36.93 Aligned_cols=61 Identities=13% Similarity=0.287 Sum_probs=45.2
Q ss_pred HHHHhhCCCCCCCccHHHHHHHHHH-----cCCCCCHHHH-----------HHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 118 RAFEAFDQEKKGSIPTDMVGTIMEM-----LGHPQSQEAL-----------NEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 118 ~~f~~~D~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~-----------~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.+|..+|.+++|+++..|+...+.. +...-.++++ +.+++.+|+|.+.-|+..+|++.-.+
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 4688999999999999999888754 1222122222 34577889999999999999987654
No 113
>KOG1265|consensus
Probab=92.38 E-value=1.7 Score=39.24 Aligned_cols=77 Identities=21% Similarity=0.399 Sum_probs=61.8
Q ss_pred cchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHc----------CCCCCHHHHHHHHHH
Q psy4728 33 LEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISEL----------DPNLDYEELNEMIEE 102 (214)
Q Consensus 33 i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l----------~~~~~~~~~~~~~~~ 102 (214)
.+++.|..++..++.+ ..+..+|..+..++.-++|..+|..+|+.- .++.....+..++..
T Consensus 205 f~~e~f~~~l~klcpR---------~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liek 275 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLCPR---------PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEK 275 (1189)
T ss_pred ccHHHHHHHHHhcCCc---------hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHH
Confidence 5677778888888775 678999999988888999999999999873 345677888999999
Q ss_pred hcCCC----CCcccHHHHHH
Q psy4728 103 IDSDG----SGTIDFDVLTR 118 (214)
Q Consensus 103 ~d~~~----~g~i~~~ef~~ 118 (214)
|..+. .|.++-+-|+.
T Consensus 276 yEp~~~~a~~gqms~dgf~r 295 (1189)
T KOG1265|consen 276 YEPNSDNAEKGQMSTDGFVR 295 (1189)
T ss_pred cCCchhhhhccccchhhhHH
Confidence 97763 57777777753
No 114
>KOG2243|consensus
Probab=92.38 E-value=0.28 Score=46.04 Aligned_cols=58 Identities=17% Similarity=0.321 Sum_probs=49.5
Q ss_pred HHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy4728 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAA 177 (214)
Q Consensus 119 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~ 177 (214)
-|+.||+++.|.|+..+|..++.... +-+..+++.++.-...+.+..++|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 57889999999999999999987533 46788899999888888888999999997664
No 115
>KOG3555|consensus
Probab=91.39 E-value=0.26 Score=39.22 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=50.0
Q ss_pred HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 118 RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 118 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
=||..+|.+.+|.++..|+..+-.. -.+.-+..+|...|...+|.|+-.||+..+..
T Consensus 254 WMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 254 WMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 3899999999999999999988543 34667888999999999999999999999987
No 116
>KOG0035|consensus
Probab=91.11 E-value=2.2 Score=38.71 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCH-----HHHHHHHHHhcCCCCCcccHHHHH
Q psy4728 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDY-----EELNEMIEEIDSDGSGTIDFDVLT 117 (214)
Q Consensus 53 ~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~ 117 (214)
++....+++..|+.+++...|.++++++..+|..+|...-. .+...++...+.+..|.+++.+|.
T Consensus 742 sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ 811 (890)
T KOG0035|consen 742 SQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFE 811 (890)
T ss_pred hHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHH
Confidence 45678899999999999999999999999999999987764 233444455566666889998886
No 117
>KOG3866|consensus
Probab=90.71 E-value=1.2 Score=35.17 Aligned_cols=86 Identities=19% Similarity=0.449 Sum_probs=53.6
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHH-c
Q psy4728 9 LGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISE-L 87 (214)
Q Consensus 9 ~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~-l 87 (214)
+++|-|.++++.+|...|.-.....+.. ..|...|.+++|.++-.++...++. +
T Consensus 220 vnhPGSkdQLkEVWEE~DgLdpn~fdPK-------------------------TFF~LHD~NsDGfldeqELEaLFtkEL 274 (442)
T KOG3866|consen 220 VNHPGSKDQLKEVWEESDGLDPNQFDPK-------------------------TFFALHDLNSDGFLDEQELEALFTKEL 274 (442)
T ss_pred CCCCCcHHHHHHHHHHhcCCCcccCCcc-------------------------hheeeeccCCcccccHHHHHHHHHHHH
Confidence 5566677777777777654333333332 2455678888888888888777765 2
Q ss_pred ----CCCCCHHH-----------HHHHHHHhcCCCCCcccHHHHHHH
Q psy4728 88 ----DPNLDYEE-----------LNEMIEEIDSDGSGTIDFDVLTRA 119 (214)
Q Consensus 88 ----~~~~~~~~-----------~~~~~~~~d~~~~g~i~~~ef~~~ 119 (214)
...-...+ ...++...|.|.+..|+.++|+..
T Consensus 275 EKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 275 EKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 11111111 245566778888888888888753
No 118
>KOG0042|consensus
Probab=90.36 E-value=0.99 Score=38.63 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q psy4728 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAF 123 (214)
Q Consensus 53 ~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~ 123 (214)
+.......+.-|..+|.++.|.++..++.+++...+..++...+..++...+.+.+|.++..+|.+++...
T Consensus 588 ~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 588 TPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred CHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 34555677778999999999999999999999998889999999999999998889999999987766554
No 119
>KOG4347|consensus
Probab=90.27 E-value=0.57 Score=40.50 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHH
Q psy4728 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVL 80 (214)
Q Consensus 14 ~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el 80 (214)
+..=+..+|...|.+.+|.+++.+++..+..++.. +..+.+.-+|..+|++++ ....+++
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~------~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAG------DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhh------hHHHHHHHHHhhccCCcc-ccccccc
Confidence 34445889999999999999999999999998876 577889999999999999 8888887
No 120
>KOG0042|consensus
Probab=90.27 E-value=0.67 Score=39.63 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=56.9
Q ss_pred HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 118 RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 118 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
..|..+|.++.|+++..+..++|+..+...+++..+.++...+.+.+|.+...+|...+..
T Consensus 597 ~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 597 TRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 5788999999999999999999999988899999999999999998999999999998876
No 121
>KOG3555|consensus
Probab=89.84 E-value=0.71 Score=36.91 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=53.0
Q ss_pred HHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCC
Q psy4728 57 RAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQ 125 (214)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~ 125 (214)
...+.-+|+.+|.+.+|.++..|++.+-. .-.+.=++-++...|...+|.|+-.||...|..-|.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~ 313 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDP 313 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhccCCC
Confidence 46788899999999999999999987653 234445677888999999999999999988876553
No 122
>KOG4347|consensus
Probab=89.73 E-value=0.8 Score=39.65 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=49.8
Q ss_pred HHHHHcCCC--CCHHHHHHHHHHcCC----CC----Ccc---------cchHHHHHHHHHHhhhhhcChHHHHHHHHHHH
Q psy4728 4 TIMEMLGHP--QSQEALNEIIKEVDE----DG----SGE---------LEFNEFCTLAAKFLEEEEENPEAMRAELREAF 64 (214)
Q Consensus 4 ~~l~~~~~~--~~~~~~~~l~~~~d~----~~----~g~---------i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f 64 (214)
..+|.+... ++..++..++..+-. +. ... |++..|..++...... .-...-+.++|
T Consensus 487 t~lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw-----~~s~~~~~rlF 561 (671)
T KOG4347|consen 487 TILRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPW-----AVSLIFLERLF 561 (671)
T ss_pred HHHHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCch-----hHHHHHHHHHH
Confidence 556666654 578888777776621 00 111 3333333333333222 12345567789
Q ss_pred HhHcCCCCCceeHHHHHHHHHHcCC
Q psy4728 65 MLYDREGNGYITTDVLREIISELDP 89 (214)
Q Consensus 65 ~~~D~~~~g~i~~~el~~~l~~l~~ 89 (214)
+.+|.+++|.|+..++...|..+-.
T Consensus 562 ~l~D~s~~g~Ltf~~lv~gL~~l~~ 586 (671)
T KOG4347|consen 562 RLLDDSMTGLLTFKDLVSGLSILKA 586 (671)
T ss_pred HhcccCCcceeEHHHHHHHHHHHHh
Confidence 9999999999999999999887633
No 123
>KOG0998|consensus
Probab=89.55 E-value=0.36 Score=43.91 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=45.6
Q ss_pred HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 118 RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 118 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.+|...|.+.+|.|+..+....+.. ..++...+..++...+..+.+.+++.+|+-.+..
T Consensus 287 ~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 287 KIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 4677888888888888888887765 3466777888888888888888888877766543
No 124
>PLN02952 phosphoinositide phospholipase C
Probab=89.45 E-value=4.5 Score=35.41 Aligned_cols=87 Identities=18% Similarity=0.328 Sum_probs=59.6
Q ss_pred CCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCC--CCCHHHHHHHHHHhcC-
Q psy4728 29 GSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDP--NLDYEELNEMIEEIDS- 105 (214)
Q Consensus 29 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~--~~~~~~~~~~~~~~d~- 105 (214)
+.|.++|++|..+++.+.... ......+..+|..+-. +.+.++.++|..+|..... ..+...+..++..+-.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~----~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~ 87 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITE----AEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINR 87 (599)
T ss_pred cCCCcCHHHHHHHHHHhcccc----CCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhh
Confidence 468999999998888764210 0124688899998854 4478999999999998754 3566667766554311
Q ss_pred ------CCCCcccHHHHHHHH
Q psy4728 106 ------DGSGTIDFDVLTRAF 120 (214)
Q Consensus 106 ------~~~g~i~~~ef~~~f 120 (214)
...+.++++.|...+
T Consensus 88 ~~~~~~~~~~~l~~~~F~~~l 108 (599)
T PLN02952 88 RHHVTRYTRHGLNLDDFFHFL 108 (599)
T ss_pred ccccccccccCcCHHHHHHHH
Confidence 123457888887644
No 125
>KOG4578|consensus
Probab=88.80 E-value=0.39 Score=38.06 Aligned_cols=58 Identities=10% Similarity=0.172 Sum_probs=46.0
Q ss_pred HHHhhCCCCCCCccHHHHHHH---HHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 119 AFEAFDQEKKGSIPTDMVGTI---MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 119 ~f~~~D~~~~g~i~~~e~~~~---l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.|.++|++.++.|...|.+.+ +..-. -...-...+++..|.|+|..|++.|+...|..
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 488999999999999985544 43322 22445677899999999999999999999975
No 126
>KOG1265|consensus
Probab=88.57 E-value=6.7 Score=35.72 Aligned_cols=109 Identities=12% Similarity=0.187 Sum_probs=78.3
Q ss_pred HcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--CCCCcccHHHH-----H-------------HHHHhhCCC
Q psy4728 67 YDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDS--DGSGTIDFDVL-----T-------------RAFEAFDQE 126 (214)
Q Consensus 67 ~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~--~~~g~i~~~ef-----~-------------~~f~~~D~~ 126 (214)
+..+..|.|....+.+++.+- -....++..+..+.. +++..|.-++| . .+|..+..+
T Consensus 157 mqvn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~~~ 233 (1189)
T KOG1265|consen 157 MQVNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKISGK 233 (1189)
T ss_pred hcccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhccC
Confidence 345678888888877777542 222556666665543 33344544333 2 578888888
Q ss_pred CCCCccHHHHHHHHHHc----------CCCCCHHHHHHHHHHhCCCC----CCceeHHHHHHHHHh
Q psy4728 127 KKGSIPTDMVGTIMEML----------GHPQSQEALNEIIKEVDEDG----SGELEFNEFCTLAAK 178 (214)
Q Consensus 127 ~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~l~~~~d~~~----~~~i~~~eF~~~l~~ 178 (214)
..-++|.++|..+++.- -....+..+..++..+-.++ .|+++-+.|++++..
T Consensus 234 ~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 234 KKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 88999999999999763 23567899999999997664 689999999999975
No 127
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=88.49 E-value=1.6 Score=30.42 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=37.4
Q ss_pred CCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-------CCCCceeHHHHHHHHHhhhhccCCCHHHHHHHHHHHHH
Q psy4728 128 KGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDE-------DGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFM 199 (214)
Q Consensus 128 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~-------~~~~~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~f~ 199 (214)
-+.|++.||.+.-+-+.. +..-+..+++.+.. +.++.|+|+.|..||..|+..+ .++.+-..+...|.
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d--~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD--LPEDLCQHLFLSFQ 79 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S----HHHHHHHHHHS-
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC--CCHHHHHHHHHHHh
Confidence 467888888887654322 22345556665532 2355899999999999998885 55555555555554
No 128
>KOG2243|consensus
Probab=88.13 E-value=1.1 Score=42.55 Aligned_cols=58 Identities=17% Similarity=0.418 Sum_probs=49.5
Q ss_pred HHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy4728 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFE 121 (214)
Q Consensus 63 ~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~ 121 (214)
.|+.+|+||.|.|+..+|.+++.. ....++.+++.+++-...+.+...+|++|+.-|.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 467789999999999999999975 3457888999999988889999999999995443
No 129
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.03 E-value=5.2 Score=25.65 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=39.2
Q ss_pred HHHHHHHHhhCCCCCCCccHHHHHHHHHH-------cCCC----CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 114 DVLTRAFEAFDQEKKGSIPTDMVGTIMEM-------LGHP----QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 114 ~ef~~~f~~~D~~~~g~i~~~e~~~~l~~-------~~~~----~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
+.|..+|..+ .+.+|.++...|...|.+ +|+. -.+.-+...|... .....|+.+.|+.++..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 3455677777 578888888888888765 2321 2566777778876 34567999999999987
No 130
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=87.20 E-value=4.9 Score=29.04 Aligned_cols=72 Identities=14% Similarity=0.265 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcCh-HHHHHHHHHHHHhHcCCCCCceeHHHHHHHH
Q psy4728 12 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENP-EAMRAELREAFMLYDREGNGYITTDVLREII 84 (214)
Q Consensus 12 ~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l 84 (214)
.+.++.++.||..++..+.+.+++.|...++...+....-.. ....-+....|.. -++.+|.+..++++.+.
T Consensus 92 rFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L-~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 92 RFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYIL-AKDKDGFLSKEDIRGVY 164 (174)
T ss_pred cCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHH-HcCcCCcEeHHHHhhhc
Confidence 467889999999999988999999999998886433210000 0112233334433 36778999999998876
No 131
>KOG1707|consensus
Probab=87.05 E-value=4 Score=35.31 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=68.2
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHH-cCCCCCHHHHHHHHHHhC---CCC--CCceeHHHHHHHHHhhhhcc-----
Q psy4728 115 VLTRAFEAFDQEKKGSIPTDMVGTIMEM-LGHPQSQEALNEIIKEVD---EDG--SGELEFNEFCTLAAKFLEEE----- 183 (214)
Q Consensus 115 ef~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d---~~~--~~~i~~~eF~~~l~~~~~~~----- 183 (214)
-+..+|...|.+++|.++..|+-.+-+. ++.++.+.++..+-.... .++ +..++...|+....-++..-
T Consensus 196 al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~Ett 275 (625)
T KOG1707|consen 196 ALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHETT 275 (625)
T ss_pred HHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccch
Confidence 4457899999999999999998887654 567787777766654443 222 44577777775544322211
Q ss_pred -------------------------------CCCHHHHHHHHHHHHHhcCccCCceee
Q psy4728 184 -------------------------------EENPEAMRAELREAFMLYDREEFMSIM 210 (214)
Q Consensus 184 -------------------------------~~~~~~~~~~~~~~f~~~d~~~~g~i~ 210 (214)
.+..+...+.+...|..||.+++|-++
T Consensus 276 W~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~ 333 (625)
T KOG1707|consen 276 WTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALS 333 (625)
T ss_pred hhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcC
Confidence 446667788999999999999999764
No 132
>KOG4578|consensus
Probab=86.45 E-value=0.71 Score=36.64 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=36.6
Q ss_pred HHHHHHHHhHcCCCCCceeHHH---HHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4728 58 AELREAFMLYDREGNGYITTDV---LREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAF 120 (214)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~e---l~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f 120 (214)
..++-.|..+|.|+++.|...| |+.++.+...+ ..=.+.++...|.|++..|++.||+...
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~--rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKP--RKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHHhhccH--HHHhhhcchhcccCCCceecHHHHhhhh
Confidence 3455566777777777777666 55666654321 2224556666677777777777776433
No 133
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=86.06 E-value=0.73 Score=30.79 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 147 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 147 ~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
+++++++.++..+-.|..|++.|.+|++-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 78999999999999999999999999988763
No 134
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=85.74 E-value=0.77 Score=30.68 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHcCCCCCcccchHHHHHHHHH
Q psy4728 12 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44 (214)
Q Consensus 12 ~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 44 (214)
-+++++|..++..+=.|..|.|.|.+|..-+..
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 479999999999999999999999999887664
No 135
>KOG0998|consensus
Probab=85.49 E-value=1.2 Score=40.66 Aligned_cols=115 Identities=22% Similarity=0.299 Sum_probs=87.6
Q ss_pred HHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHH--------------------
Q psy4728 58 AELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLT-------------------- 117 (214)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~-------------------- 117 (214)
..+..+|+..|..++|.|+..+...++..- .+..+.+-+++...+..+.|.++...|.
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s--~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKS--GLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhcc--ccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 556778999999999999999988888754 4667777788888888888888887775
Q ss_pred --------------------------------------------HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHH
Q psy4728 118 --------------------------------------------RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALN 153 (214)
Q Consensus 118 --------------------------------------------~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 153 (214)
.+|..+.+. +|.++....+.+|.. ..++.+.+.
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~--s~Lp~~~l~ 165 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLN--SKLPSDVLG 165 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhc--CCCChhhhc
Confidence 244444443 677777766666643 345666777
Q ss_pred HHHHHhCCCCCCceeHHHHHHHHH
Q psy4728 154 EIIKEVDEDGSGELEFNEFCTLAA 177 (214)
Q Consensus 154 ~l~~~~d~~~~~~i~~~eF~~~l~ 177 (214)
.++...|.+.+|.++..+|.-.+.
T Consensus 166 ~iw~l~d~d~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 166 RIWELSDIDKDGNLDRDEFAVAMH 189 (847)
T ss_pred cccccccccccCCCChhhhhhhhh
Confidence 888999999999999999987765
No 136
>KOG0035|consensus
Probab=84.36 E-value=6.7 Score=35.78 Aligned_cols=66 Identities=14% Similarity=0.150 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCH-----HHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 113 FDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQ-----EALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 113 ~~ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
..+|.+.|+-+++...|.++.+++.+.|..+|...-+ +++..++...+.+..|++++.+|..+|.+
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 4678889999999999999999999999999987653 34555566666666789999999999987
No 137
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=83.91 E-value=7.3 Score=27.16 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=40.8
Q ss_pred CcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHc-------CCCCCceeHHHHHHHHHH-cCCCCCHHHHHHHHH
Q psy4728 30 SGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYD-------REGNGYITTDVLREIISE-LDPNLDYEELNEMIE 101 (214)
Q Consensus 30 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D-------~~~~g~i~~~el~~~l~~-l~~~~~~~~~~~~~~ 101 (214)
-+.++..||.++-...-.. ..+++.+...|. .+..+.|+.+-|+.+|.. +...++.+-+..+|.
T Consensus 5 ~~~lsp~eF~qLq~y~eys--------~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~ 76 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEYS--------TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFL 76 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHH
T ss_pred eeccCHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4678999999887765333 345555555553 233568999999999998 567788888898888
Q ss_pred HhcCC
Q psy4728 102 EIDSD 106 (214)
Q Consensus 102 ~~d~~ 106 (214)
.+...
T Consensus 77 sF~~~ 81 (138)
T PF14513_consen 77 SFQKK 81 (138)
T ss_dssp HS---
T ss_pred HHhCc
Confidence 87543
No 138
>PLN02952 phosphoinositide phospholipase C
Probab=80.53 E-value=16 Score=32.18 Aligned_cols=55 Identities=11% Similarity=0.228 Sum_probs=34.4
Q ss_pred CCCccHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhcc
Q psy4728 128 KGSIPTDMVGTIMEMLG--HPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE 183 (214)
Q Consensus 128 ~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~ 183 (214)
.|.++..+|..+.+.+. ...+..++..+|..+.. +.+.++.++|.+||.....+.
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~ 70 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDEL 70 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCc
Confidence 34555555555544442 22356778888888843 346788888888888755543
No 139
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=78.95 E-value=2.2 Score=25.88 Aligned_cols=52 Identities=25% Similarity=0.427 Sum_probs=34.3
Q ss_pred HHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-------CCCcccHHHHH
Q psy4728 58 AELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSD-------GSGTIDFDVLT 117 (214)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~ 117 (214)
+.+..+|+.+ .++.+.||..+|++.|.. +.++.+...+... ..|..+|..|+
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~ 64 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFT 64 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHH
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHH
Confidence 5688899999 777899999999998742 1124444444322 12667787775
No 140
>KOG1264|consensus
Probab=78.40 E-value=15 Score=33.39 Aligned_cols=121 Identities=15% Similarity=0.227 Sum_probs=73.9
Q ss_pred HHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHH-HHHHHHhcCCCCCcccHHHHHHHHHhh------------
Q psy4728 57 RAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEEL-NEMIEEIDSDGSGTIDFDVLTRAFEAF------------ 123 (214)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~-~~~~~~~d~~~~g~i~~~ef~~~f~~~------------ 123 (214)
...++..+...|...-..|+..+++.+|.......+.... ..-+.. +.-..+.++|++|..+++..
T Consensus 143 ~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~ 221 (1267)
T KOG1264|consen 143 ERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILLEF 221 (1267)
T ss_pred HHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhhcc
Confidence 3445555666777777789999999999887665543322 122222 22346889999997543321
Q ss_pred ---------CCCCCCCccHHHHHHHHHHcCCCCCHH---HHHHHHHHhC-----CCCCCceeHHHHHHHHHh
Q psy4728 124 ---------DQEKKGSIPTDMVGTIMEMLGHPQSQE---ALNEIIKEVD-----EDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 124 ---------D~~~~g~i~~~e~~~~l~~~~~~~~~~---~~~~l~~~~d-----~~~~~~i~~~eF~~~l~~ 178 (214)
+....-.|+..+|+++|.......... .++..+..+- ......+.+.||+.||=+
T Consensus 222 ~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 222 KKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred cchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhh
Confidence 112224689999999997643322222 3444444442 224567999999999965
No 141
>KOG4403|consensus
Probab=77.19 E-value=24 Score=29.45 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHc-CCC
Q psy4728 12 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISEL-DPN 90 (214)
Q Consensus 12 ~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l-~~~ 90 (214)
.++-+.++.|-+.+|-|.+|.|+.+|--.++..-..-. .....=.+.|. . .|..|+.++++.+.... -+.
T Consensus 64 klg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~-----~~~~kr~~~fH---~-dD~~ItVedLWeaW~~Sev~n 134 (575)
T KOG4403|consen 64 KLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYR-----DSTRKRSEKFH---G-DDKHITVEDLWEAWKESEVHN 134 (575)
T ss_pred hhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcc-----cchhhhhhhcc---C-CccceeHHHHHHHHHhhhhhc
Confidence 45667889999999999999999887666665432110 11112222343 2 47899999999888763 456
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCC
Q psy4728 91 LDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEK 127 (214)
Q Consensus 91 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~ 127 (214)
++.+++-+.+-. .|.+.+|+..|+....+|
T Consensus 135 WT~e~tvqWLi~-------~VeLPqyve~fk~~kv~G 164 (575)
T KOG4403|consen 135 WTNERTVQWLIN-------DVELPQYVEAFKAKKVDG 164 (575)
T ss_pred chHHHHHHHHHH-------hcccHHHHHHHHhccCCc
Confidence 666555444433 255667777777654443
No 142
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=76.20 E-value=12 Score=22.52 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 131 IPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 131 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
++.+++..++...+..+|+.++..+++.-+..+-...+-..+..||.-
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~G 61 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNG 61 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHH
Confidence 455667777777777777777777777754443334444455555544
No 143
>PLN02222 phosphoinositide phospholipase C 2
Probab=72.22 E-value=19 Score=31.57 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=40.0
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHHcCC--CCCHHHHHHHHHHhCC-CCCCceeHHHHHHHHHh
Q psy4728 115 VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGH--PQSQEALNEIIKEVDE-DGSGELEFNEFCTLAAK 178 (214)
Q Consensus 115 ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~-~~~~~i~~~eF~~~l~~ 178 (214)
+...+|..+.. ++.++.++|..+|...+. ..+.+.+..++..+.. ...+.++++.|.+||..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 33344444432 357777777777776542 2466777777776532 23567999999999976
No 144
>KOG3449|consensus
Probab=71.92 E-value=16 Score=24.16 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=44.7
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy4728 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175 (214)
Q Consensus 116 f~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~ 175 (214)
|+.+|-.....++-..+..+++.+|...|....++.+..+++.+. |+ +.++.+..
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 556777888888989999999999999999999999999999882 22 55555544
No 145
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=70.96 E-value=24 Score=22.36 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=46.6
Q ss_pred CHHHHHHHcCCCCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhH
Q psy4728 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLY 67 (214)
Q Consensus 1 e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 67 (214)
||..+.+..|++++++++..++..+..+.-.-.+-++=..++...... .++.....+..+|..|
T Consensus 19 eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~i---T~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 19 ELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKI---TSPQTAKQVNELFEQF 82 (85)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHH
Confidence 466778899999999999999999988887878888877777766433 1233445555555543
No 146
>KOG3449|consensus
Probab=70.39 E-value=29 Score=23.06 Aligned_cols=51 Identities=24% Similarity=0.455 Sum_probs=42.4
Q ss_pred HHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHH
Q psy4728 62 EAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLT 117 (214)
Q Consensus 62 ~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 117 (214)
.+|-.+..-++-..+..+++++|..+|.....+.++.+++.. +|+ +.+|.+
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElI 55 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELI 55 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHH
Confidence 356667778888899999999999999999999999999988 344 566665
No 147
>KOG4301|consensus
Probab=69.78 E-value=20 Score=29.01 Aligned_cols=160 Identities=14% Similarity=0.169 Sum_probs=87.3
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHc------CCCCCceeHHHHHHH
Q psy4728 10 GHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYD------REGNGYITTDVLREI 83 (214)
Q Consensus 10 ~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D------~~~~g~i~~~el~~~ 83 (214)
+.+++-.+...+|..+....-..|-+..+....+..... .+.......|......|. .+.+-.|...-+..+
T Consensus 7 ~kp~~mae~~ql~~emr~qd~d~irfstyr~acklrFiq--kk~~~hlvdiwnmieafren~ln~l~~~tei~~srlea~ 84 (434)
T KOG4301|consen 7 EKPLTMAEIRQLFAEMRAQDMDDIRFSTYRTACKLRFIQ--KKCNLHLVDIWNMIEAFRENGLNNLDPNTEINVSRLEAV 84 (434)
T ss_pred CCCccHHHHHhhcccccccchhhhhhhccccccCCccee--ccCCchhHHHHHHHHHHHhccccCCCCcchhhhhHHHHH
Confidence 456677777777777766555556666665555433211 111111111111111221 222333444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHH-----HHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy4728 84 ISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLT-----RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKE 158 (214)
Q Consensus 84 l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~-----~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 158 (214)
+..+...+. .. ...+..|+-+.=+ .....+|+.+.|.++..-.+-++..++-.--.+..+.+|..
T Consensus 85 lstif~qln--------kr--L~ss~~id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~ 154 (434)
T KOG4301|consen 85 LSTIFYQLN--------KR--LPSSHQIDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSL 154 (434)
T ss_pred HHHHHHhhh--------cc--CcccccccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHH
Confidence 433211111 00 1122334433222 24557899999999999888888877554445678888888
Q ss_pred hCCCCCCceeHHHHHHHHHhhhhc
Q psy4728 159 VDEDGSGELEFNEFCTLAAKFLEE 182 (214)
Q Consensus 159 ~d~~~~~~i~~~eF~~~l~~~~~~ 182 (214)
. .++.|-+.+..|..|+...+.-
T Consensus 155 i-sds~gim~~i~~~~fl~evlsl 177 (434)
T KOG4301|consen 155 I-SDSRGIMQEIQRDQFLHEVLSL 177 (434)
T ss_pred H-ccchHHHHHHHHHHHHHHHHcC
Confidence 8 6778888888888888765544
No 148
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=69.27 E-value=9.4 Score=23.19 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=37.0
Q ss_pred CCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhc
Q psy4728 129 GSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEE 182 (214)
Q Consensus 129 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~ 182 (214)
-.|+...|..++.. .++...+..+...++.-..++|+-++|++.++...++
T Consensus 7 p~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 7 PWMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred CcccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 34554545555443 4677778888888876778899999999999986665
No 149
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=68.18 E-value=25 Score=22.69 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=42.3
Q ss_pred CCCccHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHhc
Q psy4728 128 KGSIPTDMVGTIMEMLG--HPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLY 201 (214)
Q Consensus 128 ~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 201 (214)
+|.++..|...+-..+. ..+++.+...++..+........++.+|.+.+.... ..+.+...+.-.|+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~r~~~l~~L~~vA 83 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF-----DYEERLELVEALWEVA 83 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
Confidence 67777777666554321 246778888888777555455678888888877632 2333444444444443
No 150
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=66.27 E-value=24 Score=23.62 Aligned_cols=56 Identities=9% Similarity=0.110 Sum_probs=43.2
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy4728 115 VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175 (214)
Q Consensus 115 ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~ 175 (214)
+|+.++-..-..++..+|.+++..+|...|..+.+..+..+++.+. ..+..+.+.-
T Consensus 4 kyvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa~ 59 (112)
T PTZ00373 4 KYVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIAA 59 (112)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHH
Confidence 3566666677778888999999999999999888888888888872 2466666653
No 151
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=65.59 E-value=41 Score=23.06 Aligned_cols=105 Identities=12% Similarity=0.146 Sum_probs=54.4
Q ss_pred CCcccchHHHHHHHHHHhhhhh-cChHHHHHHHHHHHHhHcCCC--CCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q psy4728 29 GSGELEFNEFCTLAAKFLEEEE-ENPEAMRAELREAFMLYDREG--NGYITTDVLREIISELDPNLDYEELNEMIEEIDS 105 (214)
Q Consensus 29 ~~g~i~~~ef~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~D~~~--~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~ 105 (214)
.=+.|-|..|..+++...-... ....-....+.++|+....+. +..++..++..++..+- ..+-.....
T Consensus 11 ~~n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy--------~~l~~~~p~ 82 (127)
T PF09068_consen 11 DFNNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIY--------EFLNKRLPT 82 (127)
T ss_dssp GGTT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHH--------HHHHHHSTT
T ss_pred HHhhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHH--------HHHHHHCCC
Confidence 3466778888888875431100 001122456677777665443 46799999999998752 111111100
Q ss_pred CCCCccc---HHHHH-----HHHHhhCCCCCCCccHHHHHHHHHHc
Q psy4728 106 DGSGTID---FDVLT-----RAFEAFDQEKKGSIPTDMVGTIMEML 143 (214)
Q Consensus 106 ~~~g~i~---~~ef~-----~~f~~~D~~~~g~i~~~e~~~~l~~~ 143 (214)
-..|+ .+.-. -++..||++++|.|+.-.++.++..+
T Consensus 83 --~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 83 --LHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp --S--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 00111 11111 15778899999999999999887654
No 152
>PLN02228 Phosphoinositide phospholipase C
Probab=64.65 E-value=41 Score=29.48 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=31.0
Q ss_pred CccHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCC----CCCceeHHHHHHHHHh
Q psy4728 130 SIPTDMVGTIMEMLGH--PQSQEALNEIIKEVDED----GSGELEFNEFCTLAAK 178 (214)
Q Consensus 130 ~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~----~~~~i~~~eF~~~l~~ 178 (214)
.|+.++|..+|...+. ..+.+.+..++..+... ..+.++.+.|..||..
T Consensus 38 ~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 38 KMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred ccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 4666666666655432 23455667777766432 2357999999999976
No 153
>PLN02230 phosphoinositide phospholipase C 4
Probab=64.39 E-value=40 Score=29.78 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHHcC-C--CCCHHHHHHHHHHhCC-------CCCCceeHHHHHHHHHh
Q psy4728 115 VLTRAFEAFDQEKKGSIPTDMVGTIMEMLG-H--PQSQEALNEIIKEVDE-------DGSGELEFNEFCTLAAK 178 (214)
Q Consensus 115 ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~--~~~~~~~~~l~~~~d~-------~~~~~i~~~eF~~~l~~ 178 (214)
|...+|..+-.++ +.++.++|..+|...+ . ..+.+.+..++..+-. -+.+.++++.|..||..
T Consensus 30 ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 30 DVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3334555553233 6778888888887754 2 2356666666654321 12346999999999976
No 154
>KOG2301|consensus
Probab=63.08 E-value=7.9 Score=37.94 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=65.6
Q ss_pred ChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCC----HHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCC
Q psy4728 52 NPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLD----YEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEK 127 (214)
Q Consensus 52 ~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~ 127 (214)
.++...+.+.++|..+|++..|.|...++...+..+.+++. .+. +.+...+....++.|++.+-+.++..-..+-
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r~l~i 1489 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKRVLGI 1489 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHHhhcc
Confidence 45677899999999999999999999999999999865432 111 3344455566789999999888887777777
Q ss_pred CCCccHHHHHHH
Q psy4728 128 KGSIPTDMVGTI 139 (214)
Q Consensus 128 ~g~i~~~e~~~~ 139 (214)
++.++..+..+.
T Consensus 1490 ~~~~~~~~~~q~ 1501 (1592)
T KOG2301|consen 1490 KKELDKVRELQE 1501 (1592)
T ss_pred cccccHHHHHHH
Confidence 776665544443
No 155
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=63.00 E-value=36 Score=21.54 Aligned_cols=50 Identities=8% Similarity=0.016 Sum_probs=36.9
Q ss_pred CCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 129 GSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 129 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
..||..||.+..+..+.++++.++..++..+..++=.-.+-.+=.+++..
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llke 62 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKE 62 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 35889999999999999999999999999986554444444444444443
No 156
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=62.79 E-value=30 Score=23.04 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=45.8
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 115 VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 115 ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
+|+.++-.....++..+|.+++..+|+..|..+.+..+..+++.+. ..+..+.+.-...
T Consensus 2 kyvaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~-----GKdi~eLIa~g~~ 60 (109)
T cd05833 2 KYVAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE-----GKDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHHhHh
Confidence 3566666777778889999999999999999888888888888772 2466777766554
No 157
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=62.74 E-value=27 Score=21.02 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHH
Q psy4728 2 VGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKF 45 (214)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 45 (214)
+.++++..|+++++.++..+++.-+..+--..+-..+..++..+
T Consensus 19 m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 19 MIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred HHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 45677777888888888888877655544444545555555444
No 158
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=61.39 E-value=11 Score=25.82 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=38.8
Q ss_pred CCCCccHHHHHHHHHHc--CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHhcCcc
Q psy4728 127 KKGSIPTDMVGTIMEML--GHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDRE 204 (214)
Q Consensus 127 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~f~~~d~~ 204 (214)
-+|.|+..|...+...+ ...+++.+...+...+..-....+++.+|+..+..... .+.+...+.-++...-.|
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~r~~ll~~l~~ia~AD 110 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLS-----PEEREDLLRMLIAIAYAD 110 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS-------HHHHHHHHHHHHHHCTCT
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhc-----hHHHHHHHHHHHHHHhcC
Confidence 35666666666554443 23445566666666664443345667777766655221 344555555565555554
Q ss_pred C
Q psy4728 205 E 205 (214)
Q Consensus 205 ~ 205 (214)
|
T Consensus 111 G 111 (140)
T PF05099_consen 111 G 111 (140)
T ss_dssp T
T ss_pred C
Confidence 4
No 159
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=60.95 E-value=28 Score=25.69 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=46.8
Q ss_pred CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCH
Q psy4728 70 EGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQ 149 (214)
Q Consensus 70 ~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~ 149 (214)
|=+|.||.++....+..- +...+...+...+ -++.+++.+. |..++..++.+. +
T Consensus 9 DFDGTITl~Ds~~~itdt---f~~~e~k~l~~~v---ls~tiS~rd~-------------------~g~mf~~i~~s~-~ 62 (220)
T COG4359 9 DFDGTITLNDSNDYITDT---FGPGEWKALKDGV---LSKTISFRDG-------------------FGRMFGSIHSSL-E 62 (220)
T ss_pred cCCCceEecchhHHHHhc---cCchHHHHHHHHH---hhCceeHHHH-------------------HHHHHHhcCCCH-H
Confidence 457889988888877652 1111222333322 1344555443 566776666554 4
Q ss_pred HHHHHHHHHhCCCCCCceeHHHHHHHHHhhh
Q psy4728 150 EALNEIIKEVDEDGSGELEFNEFCTLAAKFL 180 (214)
Q Consensus 150 ~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~ 180 (214)
+.++.+.+.+..++ .|.+|.++++.+-
T Consensus 63 Eile~llk~i~Idp----~fKef~e~ike~d 89 (220)
T COG4359 63 EILEFLLKDIKIDP----GFKEFVEWIKEHD 89 (220)
T ss_pred HHHHHHHhhcccCc----cHHHHHHHHHHcC
Confidence 45555555555553 6889999988643
No 160
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=59.01 E-value=50 Score=21.86 Aligned_cols=20 Identities=10% Similarity=0.325 Sum_probs=10.5
Q ss_pred hhCCCCCCCccHHHHHHHHH
Q psy4728 122 AFDQEKKGSIPTDMVGTIME 141 (214)
Q Consensus 122 ~~D~~~~g~i~~~e~~~~l~ 141 (214)
.||...+.+||.++++++..
T Consensus 11 LYDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred ccCCCccceeeHHHHHHHHH
Confidence 34555555555555555554
No 161
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=56.80 E-value=51 Score=21.23 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=33.2
Q ss_pred CCceeHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q psy4728 72 NGYITTDVLREIISELD--PNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEA 122 (214)
Q Consensus 72 ~g~i~~~el~~~l~~l~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~ 122 (214)
||.++..|...+-..+. ..++..+...++..+........++.+|...+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 78888888665554421 2466777777777765555566777777766543
No 162
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=55.73 E-value=52 Score=21.08 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=21.6
Q ss_pred HHHHHHHHHhHcCCCCCceeHHHHHHHHHH
Q psy4728 57 RAELREAFMLYDREGNGYITTDVLREIISE 86 (214)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 86 (214)
.++++.+|..+ .|++|.++...|...|..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d 30 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHD 30 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHH
Confidence 35778889888 788999999999988875
No 163
>PRK10236 hypothetical protein; Provisional
Probab=53.84 E-value=1e+02 Score=23.74 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHcCCCCCcccchHHHHH
Q psy4728 12 PQSQEALNEIIKEVDEDGSGELEFNEFCT 40 (214)
Q Consensus 12 ~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 40 (214)
.++.+++..++...-.+++|++..+|=..
T Consensus 16 ~cs~edL~~Lv~~Lt~d~dG~~R~te~lt 44 (237)
T PRK10236 16 HCSEEQLANFARLLTHNEKGKTRLSSVLM 44 (237)
T ss_pred hCCHHHHHHHHHHHhcCCCCCEeehhhhc
Confidence 46788999999999888889987775544
No 164
>KOG2871|consensus
Probab=52.92 E-value=13 Score=30.38 Aligned_cols=61 Identities=23% Similarity=0.375 Sum_probs=42.4
Q ss_pred HHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHH-HHHHHHhcCCCCCcccHHHHH
Q psy4728 57 RAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEEL-NEMIEEIDSDGSGTIDFDVLT 117 (214)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~-~~~~~~~d~~~~g~i~~~ef~ 117 (214)
...+++.|..+|+.++|.|+.+-+..++..++...++... ..+-...++..-|.|-..+|+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 5789999999999999999999999999988744444333 222233344445555555554
No 165
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=52.14 E-value=31 Score=20.51 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=17.8
Q ss_pred HhhCCCCCCCccHHHHHHHHHH
Q psy4728 121 EAFDQEKKGSIPTDMVGTIMEM 142 (214)
Q Consensus 121 ~~~D~~~~g~i~~~e~~~~l~~ 142 (214)
+.||...+.+|+.+++.++...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4678888888888888888765
No 166
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=51.84 E-value=23 Score=15.90 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=13.1
Q ss_pred CCCCCcccchHHHHHHHH
Q psy4728 26 DEDGSGELEFNEFCTLAA 43 (214)
Q Consensus 26 d~~~~g~i~~~ef~~~~~ 43 (214)
|.+++|.|+.-++..+-+
T Consensus 1 DvN~DG~vna~D~~~lk~ 18 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLKK 18 (21)
T ss_dssp -TTSSSSSSHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHH
Confidence 578899998888766543
No 167
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=51.39 E-value=60 Score=21.80 Aligned_cols=54 Identities=11% Similarity=0.187 Sum_probs=38.6
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy4728 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT 174 (214)
Q Consensus 116 f~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~ 174 (214)
|+.+|-..-..++-.+|.+++..+|...|..+.+..+..+++.+. ..+..+.+.
T Consensus 3 yvaAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~-----gK~i~eLIa 56 (113)
T PLN00138 3 VVAAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK-----GKDITELIA 56 (113)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 445555555567778999999999999998888877777777772 135555553
No 168
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=51.07 E-value=50 Score=19.67 Aligned_cols=33 Identities=15% Similarity=0.446 Sum_probs=27.5
Q ss_pred CCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 127 KKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEV 159 (214)
Q Consensus 127 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 159 (214)
.+-.|+.+-++.++..+|...|+..+.++++.+
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 355688888999999999999999998888776
No 169
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=50.94 E-value=43 Score=19.62 Aligned_cols=30 Identities=10% Similarity=0.234 Sum_probs=24.4
Q ss_pred CccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 130 SIPTDMVGTIMEMLGHPQSQEALNEIIKEV 159 (214)
Q Consensus 130 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 159 (214)
.+|.+|+...+..++..++..++-.++..+
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 478888888888888888888888887776
No 170
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=50.24 E-value=81 Score=21.62 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHcCCCCC--cccchHHHHHHHHHHhhhhhc-C------h-----HHHHHHHHHHHHhHcCCCCCceeHHH
Q psy4728 14 SQEALNEIIKEVDEDGS--GELEFNEFCTLAAKFLEEEEE-N------P-----EAMRAELREAFMLYDREGNGYITTDV 79 (214)
Q Consensus 14 ~~~~~~~l~~~~d~~~~--g~i~~~ef~~~~~~~~~~~~~-~------~-----~~~~~~~~~~f~~~D~~~~g~i~~~e 79 (214)
+-..+..+|+....+.. ..++..+....+...+..-.+ . + ....--+.-.++.||++++|.|+.-.
T Consensus 39 ~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls 118 (127)
T PF09068_consen 39 DLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLS 118 (127)
T ss_dssp -HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHH
T ss_pred eHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhH
Confidence 44556677777766543 668999998888776622110 0 0 11223344556788999999999888
Q ss_pred HHHHHHH
Q psy4728 80 LREIISE 86 (214)
Q Consensus 80 l~~~l~~ 86 (214)
++.++..
T Consensus 119 ~KvaL~~ 125 (127)
T PF09068_consen 119 FKVALIT 125 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887754
No 171
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=48.85 E-value=28 Score=20.48 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=20.1
Q ss_pred CccHHHHHHHHHHcCCCCCHHHHHHH
Q psy4728 130 SIPTDMVGTIMEMLGHPQSQEALNEI 155 (214)
Q Consensus 130 ~i~~~e~~~~l~~~~~~~~~~~~~~l 155 (214)
.|+.++|..+|+.....++.+++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47888889999888888888877654
No 172
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=48.36 E-value=46 Score=22.02 Aligned_cols=21 Identities=38% Similarity=0.817 Sum_probs=17.6
Q ss_pred hHcCCCCCceeHHHHHHHHHH
Q psy4728 66 LYDREGNGYITTDVLREIISE 86 (214)
Q Consensus 66 ~~D~~~~g~i~~~el~~~l~~ 86 (214)
.+|+..+-.||.+++..++..
T Consensus 11 LYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred ccCCCccceeeHHHHHHHHHC
Confidence 578888889999999888875
No 173
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=46.66 E-value=80 Score=20.54 Aligned_cols=78 Identities=10% Similarity=0.127 Sum_probs=48.4
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHH
Q psy4728 74 YITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALN 153 (214)
Q Consensus 74 ~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 153 (214)
.++..+.+.+.+.+| +++..++.+-.....+ ..+.-.++++..-......=+...+..+|+.++.....+.++
T Consensus 17 ~~~~~~wK~faR~lg--lse~~Id~I~~~~~~d-----~~Eq~~qmL~~W~~~~G~~a~~~~Li~aLr~~~l~~~Ad~I~ 89 (97)
T cd08316 17 VMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQD-----TAEQKVQLLRAWYQSHGKTGAYRTLIKTLRKAKLCTKADKIQ 89 (97)
T ss_pred HcCHHHHHHHHHHcC--CCHHHHHHHHHcCCCC-----hHHHHHHHHHHHHHHhCCCchHHHHHHHHHHccchhHHHHHH
Confidence 456677777777776 6666677665444222 245555555554333333334677888898888877777777
Q ss_pred HHHHH
Q psy4728 154 EIIKE 158 (214)
Q Consensus 154 ~l~~~ 158 (214)
.++..
T Consensus 90 ~~l~~ 94 (97)
T cd08316 90 DIIEA 94 (97)
T ss_pred HHHHh
Confidence 76543
No 174
>KOG4403|consensus
Probab=46.24 E-value=38 Score=28.38 Aligned_cols=124 Identities=16% Similarity=0.170 Sum_probs=70.1
Q ss_pred cCCCCCHHHHHHHHHHcCC-CCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHH-
Q psy4728 9 LGHPQSQEALNEIIKEVDE-DGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISE- 86 (214)
Q Consensus 9 ~~~~~~~~~~~~l~~~~d~-~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~- 86 (214)
+|..+.-......-...-. .++......+||..-...+...+ .....+.|+.+-+.+|-|.+|.|+.+|--.+++.
T Consensus 20 ~Gr~~~~sas~~at~~aa~~agds~at~nefc~~~~~~c~s~~--dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEd 97 (575)
T KOG4403|consen 20 MGRSLWISASELATNVAAVVAGDSRATRNEFCEVDAPECKSEQ--DKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRED 97 (575)
T ss_pred cchhhhhHHHHhhcchhhhhcCCchhhhccchhcCCchhhccc--chhhHHHHHHHHHhcccccCCCcccccchHHHHHH
Confidence 4555544444333333322 56667888889887766654421 1223567888888999999999999998888876
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q psy4728 87 LDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIME 141 (214)
Q Consensus 87 l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~~g~i~~~e~~~~l~ 141 (214)
+...-+...-.. .+.. .+..|+.++...++..- .---.|.++..++|.
T Consensus 98 mky~~~~~kr~~---~fH~-dD~~ItVedLWeaW~~S---ev~nWT~e~tvqWLi 145 (575)
T KOG4403|consen 98 MKYRDSTRKRSE---KFHG-DDKHITVEDLWEAWKES---EVHNWTNERTVQWLI 145 (575)
T ss_pred hhcccchhhhhh---hccC-CccceeHHHHHHHHHhh---hhhcchHHHHHHHHH
Confidence 222221111121 1211 36678887776555421 111244555555543
No 175
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.54 E-value=1.1e+02 Score=21.60 Aligned_cols=68 Identities=15% Similarity=0.270 Sum_probs=44.7
Q ss_pred CCCccHHHH---HHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHhc
Q psy4728 128 KGSIPTDMV---GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLY 201 (214)
Q Consensus 128 ~g~i~~~e~---~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 201 (214)
+|.++..|. +.++.. ...++..++..++.....-+...++|-.|...+++.+ ..+.+.+.+...|.+.
T Consensus 42 DG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~L-----d~e~R~eli~~mweIa 112 (148)
T COG4103 42 DGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHL-----DEEQRLELIGLMWEIA 112 (148)
T ss_pred ccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHH
Confidence 444444443 344443 4568899999998887666677899999999999733 3355566666555543
No 176
>PLN02223 phosphoinositide phospholipase C
Probab=45.52 E-value=1e+02 Score=26.83 Aligned_cols=53 Identities=9% Similarity=0.101 Sum_probs=31.5
Q ss_pred CCCCCccHHHHHHHH---HHc-C-CCCCHHHHHHHHHHhCCC--------CCCceeHHHHHHHHHh
Q psy4728 126 EKKGSIPTDMVGTIM---EML-G-HPQSQEALNEIIKEVDED--------GSGELEFNEFCTLAAK 178 (214)
Q Consensus 126 ~~~g~i~~~e~~~~l---~~~-~-~~~~~~~~~~l~~~~d~~--------~~~~i~~~eF~~~l~~ 178 (214)
++.|.++.+.+.++| ... | ...+.++++.++..+-.. ..+.++.+.|..||.+
T Consensus 27 ~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 27 HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 455666666666666 332 2 234555666666554221 1256999999999976
No 177
>PRK00523 hypothetical protein; Provisional
Probab=45.09 E-value=65 Score=19.66 Aligned_cols=33 Identities=15% Similarity=0.441 Sum_probs=27.3
Q ss_pred CCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 127 KKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEV 159 (214)
Q Consensus 127 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 159 (214)
.+-.|+.+-++.++..+|...|+..+.++++.+
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 455688888888888889888888888888776
No 178
>KOG2301|consensus
Probab=44.64 E-value=28 Score=34.43 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=49.5
Q ss_pred CcccHHHHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 109 GTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQS----QEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 109 g~i~~~ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~----~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
+.=++++|..++..+|++..|.|...++..+++.+..++. ... +.+--.+...+++.|++.+=+..+..
T Consensus 1412 s~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1412 SEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred CcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 3344678889999999999999999999999998755431 111 22223344557788999887777654
No 179
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.85 E-value=73 Score=19.31 Aligned_cols=33 Identities=18% Similarity=0.524 Sum_probs=27.0
Q ss_pred CCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 127 KKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEV 159 (214)
Q Consensus 127 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 159 (214)
.+-.|+.+-++.++..+|...|+..++++++.+
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 445688888888888888888888888888775
No 180
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=42.07 E-value=33 Score=20.84 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=19.9
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q psy4728 73 GYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTR 118 (214)
Q Consensus 73 g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 118 (214)
-.+++..+..++.. .++......+...|+.-..+.|+-++|++
T Consensus 7 p~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr 49 (70)
T PF12174_consen 7 PWMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVR 49 (70)
T ss_pred CcccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 34454444444433 35555555555555433344444444443
No 181
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=41.47 E-value=46 Score=19.80 Aligned_cols=37 Identities=16% Similarity=0.370 Sum_probs=29.6
Q ss_pred CCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC
Q psy4728 127 KKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDG 163 (214)
Q Consensus 127 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~ 163 (214)
.++.++..++...|...|..++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567888888888888888888888888888886554
No 182
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=41.12 E-value=1.1e+02 Score=20.54 Aligned_cols=50 Identities=14% Similarity=0.328 Sum_probs=39.1
Q ss_pred HHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHH
Q psy4728 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLT 117 (214)
Q Consensus 63 ~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 117 (214)
+|...-.-++..+|..++.++|...|.......+..+++.+.. .+.++.+
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELI 57 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELI 57 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHH
Confidence 4555556778889999999999999999999988888888732 4456655
No 183
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=39.10 E-value=72 Score=25.80 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=37.4
Q ss_pred CCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHhcCc
Q psy4728 124 DQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDR 203 (214)
Q Consensus 124 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~f~~~d~ 203 (214)
|.+...++-.++|.+....+....-..-++.+.+++-..=+|.+-|.|..+-+.+ . .+.+.++|..+.+
T Consensus 53 DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~------~-----nP~lae~F~lMaR 121 (357)
T PLN02508 53 DYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKK------T-----NPVVAEIFTLMSR 121 (357)
T ss_pred CccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccc------C-----ChHHHHHHHHhCc
Confidence 4455555556666555544332223334455555554444677777776665543 0 2355566666655
Q ss_pred cC
Q psy4728 204 EE 205 (214)
Q Consensus 204 ~~ 205 (214)
|+
T Consensus 122 DE 123 (357)
T PLN02508 122 DE 123 (357)
T ss_pred hh
Confidence 54
No 184
>PHA02335 hypothetical protein
Probab=39.04 E-value=60 Score=21.42 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHhcCccCCc
Q psy4728 152 LNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREEFM 207 (214)
Q Consensus 152 ~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g 207 (214)
+...++.+. + -..|++++|..-+++ .+.+++.|..|..+|.-
T Consensus 12 m~fAi~~Y~-n-p~sVt~ddf~~DlkR------------i~yIkrllKRy~~~~~~ 53 (118)
T PHA02335 12 MLFAIKNYN-N-PQSVTYDDFEEDLKR------------FKYIKRLFKRYLNTGEL 53 (118)
T ss_pred HHHHHHhcC-C-cccccHHHHHHHHHH------------HHHHHHHHHhhcCCCCh
Confidence 444556653 2 236999999999988 78888888888877764
No 185
>PLN02222 phosphoinositide phospholipase C 2
Probab=38.86 E-value=1.5e+02 Score=26.20 Aligned_cols=61 Identities=20% Similarity=0.369 Sum_probs=45.9
Q ss_pred HHHHHHHHhHcCCCCCceeHHHHHHHHHHcCC--CCCHHHHHHHHHHhcC-CCCCcccHHHHHHHH
Q psy4728 58 AELREAFMLYDREGNGYITTDVLREIISELDP--NLDYEELNEMIEEIDS-DGSGTIDFDVLTRAF 120 (214)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~f 120 (214)
..+..+|..+-. ++.++.++|..+|..... ..+.+.+..++..+.. -..+.++++.|...+
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL 88 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYL 88 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHh
Confidence 478888888853 579999999999998754 3467778888887632 235678999887654
No 186
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=38.35 E-value=45 Score=20.79 Aligned_cols=34 Identities=29% Similarity=0.552 Sum_probs=28.0
Q ss_pred cCCCCCHHHHHHHHHHcCCCC-CcccchHHHHHHH
Q psy4728 9 LGHPQSQEALNEIIKEVDEDG-SGELEFNEFCTLA 42 (214)
Q Consensus 9 ~~~~~~~~~~~~l~~~~d~~~-~g~i~~~ef~~~~ 42 (214)
.|.+.+.+.+...+..++.+. -|.++.++++.++
T Consensus 52 ~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 52 IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 688899999999999996653 5788999888764
No 187
>KOG2871|consensus
Probab=37.88 E-value=34 Score=28.06 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=43.6
Q ss_pred HHHHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHH-HHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy4728 114 DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQE-ALNEIIKEVDEDGSGELEFNEFCTLAA 177 (214)
Q Consensus 114 ~ef~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~l~~~~d~~~~~~i~~~eF~~~l~ 177 (214)
++.+++|+.+|+.++|+|+-.-++.++......+++. .+..+-..+++.+-|.|-..+|..-+.
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 4555899999999999999999999998877555543 333333345555556565555554443
No 188
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=37.67 E-value=1.1e+02 Score=19.71 Aligned_cols=87 Identities=14% Similarity=0.207 Sum_probs=56.5
Q ss_pred HHHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCCCccHHHHH
Q psy4728 58 AELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVG 137 (214)
Q Consensus 58 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~f~~~D~~~~g~i~~~e~~ 137 (214)
+.+..+|..+ ...|+..+...+.+.+| +++.++..+-.... +. .+.-.+++...-......-|...+.
T Consensus 4 ~~l~~~f~~i----~~~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~----~~--~eq~~qmL~~W~~~~G~~At~~~L~ 71 (96)
T cd08315 4 ETLRRSFDHF----IKEVPFDSWNRLMRQLG--LSENEIDVAKANER----VT--REQLYQMLLTWVNKTGRKASVNTLL 71 (96)
T ss_pred hHHHHHHHHH----HHHCCHHHHHHHHHHcC--CCHHHHHHHHHHCC----CC--HHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4566677666 34567788888888887 77777777765542 11 3444444444432223345688899
Q ss_pred HHHHHcCCCCCHHHHHHHH
Q psy4728 138 TIMEMLGHPQSQEALNEII 156 (214)
Q Consensus 138 ~~l~~~~~~~~~~~~~~l~ 156 (214)
++|..++.....+.++..+
T Consensus 72 ~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 72 DALEAIGLRLAKESIQDEL 90 (96)
T ss_pred HHHHHcccccHHHHHHHHH
Confidence 9999998888777776654
No 189
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=37.45 E-value=1.5e+02 Score=22.33 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=41.0
Q ss_pred HhcCCCCCcccHHHHHHHHHhhCCCCCCCccHHHHHHHHHHc---CCC---------------C--CH--HHHHHHHHHh
Q psy4728 102 EIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEML---GHP---------------Q--SQ--EALNEIIKEV 159 (214)
Q Consensus 102 ~~d~~~~g~i~~~ef~~~f~~~D~~~~g~i~~~e~~~~l~~~---~~~---------------~--~~--~~~~~l~~~~ 159 (214)
..-....|.|+..+....|.. ...+...|+++++.++++.+ |.+ . ++ .....++..+
T Consensus 105 ~~~~~~GGii~L~dl~~~~nr-~R~g~~lISp~Di~~A~~~l~~lg~g~~l~~~~sg~~vv~s~~~~e~~~~~~~il~~~ 183 (223)
T PF04157_consen 105 ATRSKNGGIISLSDLYCRYNR-ARGGSELISPEDILRACKLLEVLGLGFRLRKFGSGVKVVQSVPYSELSKDQSRILELA 183 (223)
T ss_dssp HHCCTTTSEEEHHHHHHHHHH-CTTTSST--HHHHHHHHHHHCCCTSSEEEEEETTTEEEEECST-CHH-HHHHHHHHHH
T ss_pred HHHhcCCCEEEHHHHHHHHHH-hcccCCCcCHHHHHHHHHHHHHcCCCeEEEEeCCCcEEEEeCCchhhhHHHHHHHHHH
Confidence 333444577888877776666 22356678888888887763 111 1 12 3344555555
Q ss_pred CCCCCCceeHHHHHHHHH
Q psy4728 160 DEDGSGELEFNEFCTLAA 177 (214)
Q Consensus 160 d~~~~~~i~~~eF~~~l~ 177 (214)
.....|.++-.+...-+.
T Consensus 184 ~~~~~g~vt~~~l~~~~~ 201 (223)
T PF04157_consen 184 EEENGGGVTASELAEKLG 201 (223)
T ss_dssp --TTTSEEEHHHHHHHHT
T ss_pred HhhcCCCCCHHHHHHHhC
Confidence 234456777777665554
No 190
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=37.26 E-value=67 Score=26.04 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=26.3
Q ss_pred CCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy4728 124 DQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAA 177 (214)
Q Consensus 124 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~ 177 (214)
|.+...++-.++|.+.+..+....-..-++.+.+++-..=+|.+-|.|..+-++
T Consensus 57 DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk 110 (355)
T PRK13654 57 DYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLK 110 (355)
T ss_pred CcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcc
Confidence 344455555555555444333222233444444444333356666666665554
No 191
>KOG1785|consensus
Probab=37.01 E-value=2e+02 Score=24.10 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=42.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCC---ceeHH
Q psy4728 2 VGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG---YITTD 78 (214)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g---~i~~~ 78 (214)
|.++|..+....+--++..+-.-+|...++.|+.=||-.+...++.. ..+.+-|+.+..-+-| .+++.
T Consensus 196 F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw---------~tllkNWq~LavtHPGYmAFLTYD 266 (563)
T KOG1785|consen 196 FRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPW---------KTLLKNWQTLAVTHPGYMAFLTYD 266 (563)
T ss_pred HHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhccH---------HHHHHhhhhhhccCCceeEEeeHH
Confidence 34555555544444555666666677777777766665554444322 2233334444444444 36677
Q ss_pred HHHHHHHHc
Q psy4728 79 VLREIISEL 87 (214)
Q Consensus 79 el~~~l~~l 87 (214)
|++.-|.++
T Consensus 267 EVk~RLqk~ 275 (563)
T KOG1785|consen 267 EVKARLQKY 275 (563)
T ss_pred HHHHHHHHH
Confidence 777776664
No 192
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=36.61 E-value=1.5e+02 Score=20.83 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=13.3
Q ss_pred HHHHHHcCCCCCHHHHHHHH
Q psy4728 137 GTIMEMLGHPQSQEALNEII 156 (214)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~l~ 156 (214)
.+-+..+|..++++++..++
T Consensus 96 ~~e~eklGi~Vs~~El~d~l 115 (145)
T PF13623_consen 96 EQEFEKLGITVSDDELQDML 115 (145)
T ss_pred HHHHHHhCCccCHHHHHHHH
Confidence 33344567777887777776
No 193
>PLN02228 Phosphoinositide phospholipase C
Probab=36.51 E-value=1.3e+02 Score=26.50 Aligned_cols=71 Identities=10% Similarity=0.246 Sum_probs=49.3
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCC----CCCceeHHHHHHHHH
Q psy4728 10 GHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDRE----GNGYITTDVLREIIS 85 (214)
Q Consensus 10 ~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~----~~g~i~~~el~~~l~ 85 (214)
.....+.++..+|..+-. ++.++.++|..++...+... ......+..++..+... ..|.++...|...|.
T Consensus 18 ~~~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 18 KTREPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGER----HAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCCCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCc----cCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 344578899999999854 35799999999887765431 11234455666666432 346799999999886
Q ss_pred H
Q psy4728 86 E 86 (214)
Q Consensus 86 ~ 86 (214)
.
T Consensus 92 s 92 (567)
T PLN02228 92 S 92 (567)
T ss_pred C
Confidence 5
No 194
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=36.19 E-value=67 Score=25.65 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=24.6
Q ss_pred CCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 125 QEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 125 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.+...++-.++|.+....+.......-++-+.+++-..=+|.+-|.|..+-+.+
T Consensus 38 yNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~ 91 (323)
T cd01047 38 YNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKN 91 (323)
T ss_pred cccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHccc
Confidence 344444444555554443322233333444444443333566666665555543
No 195
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=35.79 E-value=56 Score=26.39 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=26.3
Q ss_pred CCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy4728 124 DQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAA 177 (214)
Q Consensus 124 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~ 177 (214)
|.+...++-.+||.+.+..+....-..-++.+.+.+-..=+|.+-|.|..+-++
T Consensus 53 DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk 106 (351)
T CHL00185 53 DYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLK 106 (351)
T ss_pred CccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhc
Confidence 444555555555555444432222233344444444333356666666665554
No 196
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=35.18 E-value=78 Score=17.11 Aligned_cols=30 Identities=17% Similarity=0.418 Sum_probs=22.2
Q ss_pred HHHHHHHHHhHc-CC-CCCceeHHHHHHHHHH
Q psy4728 57 RAELREAFMLYD-RE-GNGYITTDVLREIISE 86 (214)
Q Consensus 57 ~~~~~~~f~~~D-~~-~~g~i~~~el~~~l~~ 86 (214)
...+..+|..|. ++ ....++..||+..+..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 456677888774 33 3578999999999976
No 197
>PRK01844 hypothetical protein; Provisional
Probab=34.64 E-value=1.1e+02 Score=18.69 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=26.9
Q ss_pred CCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 127 KKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEV 159 (214)
Q Consensus 127 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 159 (214)
.+-.|+.+-++..+..+|...|+..+.++++.+
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345688888888888888888888888888776
No 198
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=34.55 E-value=47 Score=20.67 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=11.5
Q ss_pred CCCccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 128 KGSIPTDMVGTIMEMLGHPQSQEALNEIIKEV 159 (214)
Q Consensus 128 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 159 (214)
.|+||..++..+|.. ..++++.++.++..+
T Consensus 19 ~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L 48 (82)
T PF03979_consen 19 KGYLTYDEINDALPE--DDLDPEQIDEIYDTL 48 (82)
T ss_dssp HSS-BHHHHHHH-S---S---HHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCc--cCCCHHHHHHHHHHH
Confidence 344444445554432 224455555555444
No 199
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=33.24 E-value=1.3e+02 Score=19.02 Aligned_cols=60 Identities=23% Similarity=0.250 Sum_probs=36.9
Q ss_pred HHHHHH-HHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 113 FDVLTR-AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 113 ~~ef~~-~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
|++|+. +++.+ .+..|.++..|+...+... ..+++++....+. ++.+..-|..=+.+...
T Consensus 2 ~~~~~~piL~~L-~~~g~~~~~~ei~~~v~~~-~~ls~e~~~~~~~----sg~~~~~~~~ri~Wa~~ 62 (92)
T PF14338_consen 2 YDELMPPILEAL-KDLGGSASRKEIYERVAER-FGLSDEERNERLP----SGQGYSRFKNRIRWARS 62 (92)
T ss_pred HHHHHHHHHHHH-HHcCCCcCHHHHHHHHHHH-hCCCHHHHHHHcc----cCCcchhHHHhHHHHHH
Confidence 555553 33333 4557888888888888663 3577776654333 44455567777777665
No 200
>PLN02230 phosphoinositide phospholipase C 4
Probab=33.17 E-value=2.5e+02 Score=25.02 Aligned_cols=63 Identities=16% Similarity=0.306 Sum_probs=44.4
Q ss_pred HHHHHHHHHhHcCCCCCceeHHHHHHHHHHcCC---CCCHHHHHHHHHHhcC-------CCCCcccHHHHHHHH
Q psy4728 57 RAELREAFMLYDREGNGYITTDVLREIISELDP---NLDYEELNEMIEEIDS-------DGSGTIDFDVLTRAF 120 (214)
Q Consensus 57 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~---~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~f 120 (214)
...+..+|..+-.+ .+.++.++|..+|...+. ..+...+..++..+-. -..+.++.+.|...+
T Consensus 28 ~~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL 100 (598)
T PLN02230 28 VADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYL 100 (598)
T ss_pred cHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHH
Confidence 46888999998544 489999999999998763 2356667777654421 123468888887644
No 201
>KOG1954|consensus
Probab=32.50 E-value=64 Score=26.85 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=39.9
Q ss_pred HHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy4728 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT 174 (214)
Q Consensus 119 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~ 174 (214)
+|-.+. --+|.|+...-+..+. +..+++..+-.+++..|.+.+|.++-+||.-
T Consensus 449 ~fy~l~-p~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 449 IFYTLS-PVNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hhhccc-ccCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 444443 3567787776666653 3457788999999999999999999999963
No 202
>KOG0869|consensus
Probab=32.39 E-value=1.4e+02 Score=21.39 Aligned_cols=36 Identities=25% Similarity=0.144 Sum_probs=23.7
Q ss_pred HcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy4728 67 YDREGNGYITTDVLREIISELDPNLDYEELNEMIEE 102 (214)
Q Consensus 67 ~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~ 102 (214)
+-+.+...|+-+++.-++..||..--.+-+...+.+
T Consensus 79 C~~EkRKTIngdDllwAm~tLGFe~Y~eplkiyL~k 114 (168)
T KOG0869|consen 79 CQREKRKTINGDDLLWAMSTLGFENYAEPLKIYLQK 114 (168)
T ss_pred HHHHhcCcccHHHHHHHHHHcCcHhHHHHHHHHHHH
Confidence 335667899999999999998865433333333333
No 203
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=32.36 E-value=1.1e+02 Score=19.42 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 131 IPTDMVGTIMEMLGHPQSQEALNEIIKEV 159 (214)
Q Consensus 131 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 159 (214)
|+.+++.++.+-....+++++++.+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 57788888888888888888877665443
No 204
>KOG4286|consensus
Probab=32.30 E-value=2.2e+02 Score=26.10 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCce
Q psy4728 17 ALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYI 75 (214)
Q Consensus 17 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 75 (214)
-+-=+++.||+..+|.|..-+|+-.+..++.. ...+.++.+|.....+++-++
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~------~leek~~ylF~~vA~~~sq~~ 523 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKA------HLEDKYRYLFKQVASSTSQCD 523 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcc------hhHHHHHHHHHHHcCchhhHH
Confidence 34557889999999999999999988888765 456778889988866655543
No 205
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=32.24 E-value=1.4e+02 Score=19.00 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=31.2
Q ss_pred CCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy4728 129 GSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAA 177 (214)
Q Consensus 129 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~ 177 (214)
-.|+-.+|.+.|...+.-.+..+...+=.-+|...++.||-=||--|.+
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 4456666677776655444445556666667888889998888766654
No 206
>KOG4004|consensus
Probab=31.80 E-value=16 Score=27.13 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=28.2
Q ss_pred CcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHH
Q psy4728 30 SGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREII 84 (214)
Q Consensus 30 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l 84 (214)
+|.++-.|...+...++.. ..=+...|.-.|.|++|.|+..|-..++
T Consensus 202 d~~~sh~el~pl~ap~ipm--------e~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPLIPM--------EHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccCCcccH--------HhhchhhhhcccCCCCCceeHHHhhccc
Confidence 4556666655555444332 3445556677777777777777666555
No 207
>KOG0871|consensus
Probab=31.72 E-value=1.3e+02 Score=21.31 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=26.4
Q ss_pred hHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy4728 66 LYDREGNGYITTDVLREIISELDPNLDYEELNEMIEE 102 (214)
Q Consensus 66 ~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~ 102 (214)
..+......|.++-+.++|..||..---+++..++..
T Consensus 58 ic~~e~KKTIa~EHV~KALe~LgF~eYiee~~~vl~~ 94 (156)
T KOG0871|consen 58 ICNKEAKKTIAPEHVIKALENLGFGEYIEEAEEVLEN 94 (156)
T ss_pred HHhHHhcccCCHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 3456677899999999999999876444444444433
No 208
>KOG4301|consensus
Probab=31.44 E-value=2.6e+02 Score=22.93 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=39.9
Q ss_pred HHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHc
Q psy4728 20 EIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISEL 87 (214)
Q Consensus 20 ~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l 87 (214)
-+..++|+.+.|.++.-.....+.-.+.. ....+++.+|... .+++|.+....+.+++...
T Consensus 114 flLaA~ds~~~g~~~vfavkialatlc~g------k~~dklryIfs~i-sds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATLCGG------KIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhhccc------hHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH
Confidence 34556677777777666665555555443 3457788888776 4567887777777776653
No 209
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=29.45 E-value=1.5e+02 Score=24.17 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=19.7
Q ss_pred CCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 127 KKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEV 159 (214)
Q Consensus 127 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 159 (214)
..|.||++|-...++......+++.++.+++.+
T Consensus 299 R~G~itReeal~~v~~~d~~~~~~~~~~~~~~l 331 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEFPKEDLEYFLKYL 331 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 456666666666666644444555666666665
No 210
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=28.93 E-value=1.8e+02 Score=19.37 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=41.1
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy4728 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAA 177 (214)
Q Consensus 116 f~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~ 177 (214)
|+..+-.+...+. .|+.+.++.++...|..+.+..+..++..+. .++.++-+.-..
T Consensus 3 Yi~a~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLe-----g~~idE~i~~~~ 58 (109)
T COG2058 3 YIYAYLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALE-----GVDIDEVIKNAA 58 (109)
T ss_pred HHHHHHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc-----CCCHHHHHHHhc
Confidence 3444444444444 8999999999999999999999999988883 247777665544
No 211
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=28.91 E-value=79 Score=19.66 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy4728 133 TDMVGTIMEMLGHPQSQEALNEIIKE 158 (214)
Q Consensus 133 ~~e~~~~l~~~~~~~~~~~~~~l~~~ 158 (214)
.-|+..+|+.+|..+++++...+-..
T Consensus 19 kvEIL~ALrkLge~Ls~eE~~FL~~~ 44 (78)
T PF06384_consen 19 KVEILTALRKLGEKLSPEEEAFLEAH 44 (78)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44677889999999999988776543
No 212
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=28.74 E-value=1.2e+02 Score=19.66 Aligned_cols=57 Identities=9% Similarity=0.141 Sum_probs=39.3
Q ss_pred CcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHH
Q psy4728 30 SGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISE 86 (214)
Q Consensus 30 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 86 (214)
-|.|+..++..+...+..+...........++.-|...-......+|..|+......
T Consensus 15 aG~v~~k~~~dy~~Ei~KR~~~m~~~~~k~f~~~~~~~~~kn~~~ms~~e~~k~~~e 71 (93)
T PF06518_consen 15 AGKVDPKDVPDYKMEIHKRLKKMKEKEAKDFKKQFKEAARKNLSKMSVEERKKRREE 71 (93)
T ss_dssp TTTS-GGGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 588888888888887776666666666777777777554455677888887776654
No 213
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=28.71 E-value=75 Score=25.54 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=23.9
Q ss_pred CCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 125 QEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 125 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
.+..-++-.++|.+....+....-..-++.+.+++-..=+|.+-|.|..+-+++
T Consensus 48 yNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~ 101 (337)
T TIGR02029 48 YNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKN 101 (337)
T ss_pred ccccccccChhhhcchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC
Confidence 344444445555554433322222223444444443333566666665555543
No 214
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=27.82 E-value=1.3e+02 Score=21.12 Aligned_cols=31 Identities=3% Similarity=0.168 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Q psy4728 131 IPTDMVGTIMEMLGHPQSQEALNEIIKEVDE 161 (214)
Q Consensus 131 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 161 (214)
.|+++++.+...+..++|++++..++..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 4677777776656666788888888877764
No 215
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=27.40 E-value=1.9e+02 Score=19.23 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=33.5
Q ss_pred HHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEI 103 (214)
Q Consensus 63 ~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~ 103 (214)
+|...-..++..+|..++..+|...|.......+..+++.+
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L 46 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISEL 46 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 44455567788999999999999999988888888887776
No 216
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=27.27 E-value=2.4e+02 Score=20.37 Aligned_cols=56 Identities=14% Similarity=0.356 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHhcCccCC
Q psy4728 131 IPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREEF 206 (214)
Q Consensus 131 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~ 206 (214)
|...+.+.-|+..|..........++..+-.++.|.+ |..| ..++.+.+.||++++
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~~-y~~~-------------------~~iknlm~~yd~dgd 57 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGAM-YTNI-------------------QGIKNLMSQYDKDGD 57 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCce-eehH-------------------HHHHHHHHhcCCCCc
Confidence 3445667777778887777777778888767766654 2222 234556677887764
No 217
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=26.47 E-value=1.1e+02 Score=19.63 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=6.5
Q ss_pred CCCccHHHHHHHHH
Q psy4728 128 KGSIPTDMVGTIME 141 (214)
Q Consensus 128 ~g~i~~~e~~~~l~ 141 (214)
+|.++..|...+..
T Consensus 16 DG~v~~~E~~~i~~ 29 (111)
T cd07176 16 DGDIDDAELQAIEA 29 (111)
T ss_pred ccCCCHHHHHHHHH
Confidence 34455444444443
No 218
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=26.42 E-value=1.4e+02 Score=18.67 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 144 GHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 144 ~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
|-.++++..+.+-+.+....+..|+|++.+.+...
T Consensus 43 gG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~ 77 (82)
T PF11020_consen 43 GGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALG 77 (82)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55677777777777766666677999999988765
No 219
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=26.24 E-value=2.4e+02 Score=22.12 Aligned_cols=69 Identities=13% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCCccHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhccCCCHHHHHHHHHHH
Q psy4728 128 KGSIPTDMVGTIMEMLG--HPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREA 197 (214)
Q Consensus 128 ~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (214)
+|.|+..|+. +.+.+- ..+++++-..+...+..-.....++.+|+..++..........+.+.+.+-.+
T Consensus 69 DG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~v 139 (267)
T PRK09430 69 KGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQA 139 (267)
T ss_pred CCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHH
No 220
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=26.09 E-value=1.7e+02 Score=18.56 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=23.7
Q ss_pred CccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 130 SIPTDMVGTIMEMLGHPQSQEALNEIIKEV 159 (214)
Q Consensus 130 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 159 (214)
.|+.++++.+.+-....++++++..+...+
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 478889999988888889988877765544
No 221
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=25.48 E-value=91 Score=17.01 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=15.6
Q ss_pred cHHHHHHHHHHcCCCCCHHHH
Q psy4728 132 PTDMVGTIMEMLGHPQSQEAL 152 (214)
Q Consensus 132 ~~~e~~~~l~~~~~~~~~~~~ 152 (214)
+.+++..+.+..|..+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 567777777788888877665
No 222
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=25.26 E-value=2.1e+02 Score=18.91 Aligned_cols=43 Identities=9% Similarity=0.238 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 131 IPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 131 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
+|.+++..+|...|..+.+..+..+++.+. ..+..+.+.-...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 999999999999999999998988888872 2467777766654
No 223
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=25.25 E-value=34 Score=21.11 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=28.4
Q ss_pred CCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeH
Q psy4728 126 EKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEF 169 (214)
Q Consensus 126 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~ 169 (214)
+.+|.=+..+|-.+|..+|-.+-+..++.+++.+ ..+.|.+.+
T Consensus 36 ~dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSM-tR~tgF~E~ 78 (88)
T PF15144_consen 36 DDSGKNPEPDFPKFLNLLGTEIIENAVEFILRSM-TRSTGFMEF 78 (88)
T ss_pred cccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHh-hcccCceec
Confidence 3445555667778888788767677778888887 444554433
No 224
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=25.24 E-value=2.1e+02 Score=19.88 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=26.3
Q ss_pred CCCceeHHHHHHHHHHcCC---------CCCHHHHHHHHHHhcCCCCC-cccHHHHH
Q psy4728 71 GNGYITTDVLREIISELDP---------NLDYEELNEMIEEIDSDGSG-TIDFDVLT 117 (214)
Q Consensus 71 ~~g~i~~~el~~~l~~l~~---------~~~~~~~~~~~~~~d~~~~g-~i~~~ef~ 117 (214)
|+..||.+||.+.+..-.. .++..+++++...+.....+ .++..|.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~L 136 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEAL 136 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHH
Confidence 5666777777776665211 34566666666666544333 25555543
No 225
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=24.89 E-value=1.7e+02 Score=18.92 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=23.7
Q ss_pred CccHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 130 SIPTDMVGTIMEMLGHPQSQEALNEIIKEV 159 (214)
Q Consensus 130 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 159 (214)
.|+.++++++.+-....+++++++.+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 578899999988888889988887665444
No 226
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=24.14 E-value=1.8e+02 Score=17.73 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCc-eeHHHHHHHHHHc
Q psy4728 17 ALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGY-ITTDVLREIISEL 87 (214)
Q Consensus 17 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~-i~~~el~~~l~~l 87 (214)
-+.+++...-.+.+-+|+-+........+.-. ..+.+.++...-...+.+. |+.+++.+++.++
T Consensus 4 li~rll~~~f~~~~tkIs~dal~l~~eyl~iF-------V~EAv~Ra~~~a~~e~~~~~le~e~LEki~pqL 68 (72)
T PF09415_consen 4 LIARLLHEHFKDDKTKISKDALKLSAEYLRIF-------VREAVARAAEQAEAEGDEGFLEVEHLEKILPQL 68 (72)
T ss_dssp HHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHH-------HHHHHHHHHHHHHHTT-SSEE-HHHHHHHCHCH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 34566665555566667655443333222111 1223333333333344444 9999999987654
No 227
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=23.83 E-value=2.3e+02 Score=18.84 Aligned_cols=40 Identities=13% Similarity=0.322 Sum_probs=31.6
Q ss_pred CccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy4728 130 SIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT 174 (214)
Q Consensus 130 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~ 174 (214)
.||.+.+..+|...|..+.+..+..+++.+. .++..+.+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~-----GkdIeElI~ 55 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE-----DVNIEEAIK 55 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 7999999999999998888888888887772 245666554
No 228
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=23.55 E-value=4e+02 Score=23.02 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHcC
Q psy4728 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELD 88 (214)
Q Consensus 54 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l~ 88 (214)
..+...+..+|+..|.++--.|+..+++.+|.-++
T Consensus 124 dtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~ 158 (502)
T PF05872_consen 124 DTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVS 158 (502)
T ss_pred hHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH
Confidence 45667888899999999889999999999998763
No 229
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=23.33 E-value=1.8e+02 Score=21.37 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=18.2
Q ss_pred CCCCcccHHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q psy4728 106 DGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEM 142 (214)
Q Consensus 106 ~~~g~i~~~ef~~~f~~~D~~~~g~i~~~e~~~~l~~ 142 (214)
|.+|++..+++++..+.. ...++.+++.++...
T Consensus 29 d~~G~v~v~~Ll~~~~~~----~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 29 DEEGWVDIDALIEALAKA----YKWVTRELLEAVVES 61 (179)
T ss_pred CCCCCEEHHHHHHHHHHc----cCCCCHHHHHHHHHc
Confidence 556667766666555421 123566666666543
No 230
>KOG1954|consensus
Probab=22.76 E-value=2.9e+02 Score=23.18 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=40.8
Q ss_pred HHHHHHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHH
Q psy4728 59 ELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRA 119 (214)
Q Consensus 59 ~~~~~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 119 (214)
...++|..+.+- +|.|+-..-++.+.. ..++...+-++++..|.|.+|.++-+||..+
T Consensus 445 ~yde~fy~l~p~-~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 445 TYDEIFYTLSPV-NGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred chHhhhhccccc-CceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 455667666543 788887776665543 4577777888888888888888888887544
No 231
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=22.21 E-value=2.3e+02 Score=18.24 Aligned_cols=79 Identities=8% Similarity=0.124 Sum_probs=48.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCCCcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHH
Q psy4728 2 VGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLR 81 (214)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~ 81 (214)
+...++++...++..-+..|.+..... .|+-.-...+....... .......+.....-.+...|+.+|+.
T Consensus 9 ~r~~~~~~~~~Lp~apv~Ri~r~~~~~---Rvs~~A~~~l~~~~e~~-------~~~i~~~A~~~A~ha~RKTV~~~DI~ 78 (91)
T COG2036 9 IRRYQRSTDLLLPKAPVRRILRKAGAE---RVSSSAIEELQEALEEY-------LEEIAEDAVELAEHAKRKTVKAEDIK 78 (91)
T ss_pred HHhhhhhhhhhcCchHHHHHHHHHhHH---HhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCeecHHHHH
Confidence 345667777777888888888887554 45444333333222111 12333444445556778899999999
Q ss_pred HHHHHcCCC
Q psy4728 82 EIISELDPN 90 (214)
Q Consensus 82 ~~l~~l~~~ 90 (214)
.++..++..
T Consensus 79 la~~~~~~~ 87 (91)
T COG2036 79 LALKRLGRR 87 (91)
T ss_pred HHHHHhccc
Confidence 999877643
No 232
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=21.88 E-value=71 Score=19.92 Aligned_cols=42 Identities=21% Similarity=0.486 Sum_probs=23.6
Q ss_pred hHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccH
Q psy4728 66 LYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113 (214)
Q Consensus 66 ~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~ 113 (214)
.|..+..+.++..+.+..+. ......+..+...+.. -|.|||
T Consensus 45 ~w~~n~~~~lt~~~~~~~i~----~~d~~~~~ri~~FL~~--~G~INf 86 (86)
T PF04433_consen 45 EWRKNPNKYLTKTDARKLIK----GIDVNKIRRIYDFLER--WGLINF 86 (86)
T ss_dssp HHHHHTTS---HHHHHHHTT----SSSHHHHHHHHHHHHH--TTSSSS
T ss_pred HHHHCCCCcccHHHHHHHcc----ccCHHHHHHHHHHHHH--cCccCC
Confidence 34556788999988877775 3455556666555432 466654
No 233
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=20.69 E-value=2.5e+02 Score=18.11 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=33.9
Q ss_pred CCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy4728 127 KKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178 (214)
Q Consensus 127 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~l~~ 178 (214)
+.|.+|.++...+-. .+.+.+.+..++....+- |.--|..|+.+|..
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiLp~R--G~~AF~~F~~aL~e 78 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDILPSR--GPKAFHAFLDSLEE 78 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHHHhh--ChhHHHHHHHHHHH
Confidence 467888887777743 445677788888887433 45689999999975
No 234
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=20.63 E-value=1.6e+02 Score=17.23 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=21.1
Q ss_pred ccHHHHHHHHH-HcCCCCCHHHHHHHHHHhCCCC
Q psy4728 131 IPTDMVGTIME-MLGHPQSQEALNEIIKEVDEDG 163 (214)
Q Consensus 131 i~~~e~~~~l~-~~~~~~~~~~~~~l~~~~d~~~ 163 (214)
++.+++.+.+. .....++++++..-.+.++.|.
T Consensus 4 ~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~ 37 (69)
T PF00690_consen 4 LSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPNE 37 (69)
T ss_dssp SSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSS
T ss_pred CCHHHHHHHHCcCCCCCCCHHHHHHHHHhccccc
Confidence 45566666665 3445677777777777776653
No 235
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.62 E-value=1.9e+02 Score=24.91 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=33.6
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCC--CCCcccchHHHHHHHHHHh
Q psy4728 3 GTIMEMLGHPQSQEALNEIIKEVDE--DGSGELEFNEFCTLAAKFL 46 (214)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~l~~~~d~--~~~g~i~~~ef~~~~~~~~ 46 (214)
...|+.+|+.+++.++..++..+.. +..+.++-.++..++....
T Consensus 324 ~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~~ 369 (488)
T PRK09389 324 KAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDVL 369 (488)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Confidence 4567889999999999988888754 3445788888888876543
No 236
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=20.53 E-value=2.2e+02 Score=18.97 Aligned_cols=28 Identities=29% Similarity=0.289 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 132 PTDMVGTIMEMLGHPQSQEALNEIIKEV 159 (214)
Q Consensus 132 ~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 159 (214)
+.+|++.++......+++++++.++..+
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~l 107 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDIV 107 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4566666666665566677776666544
No 237
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.47 E-value=1.7e+02 Score=16.03 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=21.4
Q ss_pred CCCCcc-HHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 127 KKGSIP-TDMVGTIMEMLGHPQSQEALNEIIKEV 159 (214)
Q Consensus 127 ~~g~i~-~~e~~~~l~~~~~~~~~~~~~~l~~~~ 159 (214)
..|.|+ ..++...|...|..++++.++.+++.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 356665 444445556667788888888877654
No 238
>KOG0039|consensus
Probab=20.41 E-value=1.8e+02 Score=26.19 Aligned_cols=45 Identities=29% Similarity=0.592 Sum_probs=33.1
Q ss_pred CcccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHcCCCCCceeHHHHHHHHHHc
Q psy4728 30 SGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISEL 87 (214)
Q Consensus 30 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~l 87 (214)
+| +++++|. ... .+-..+++..|...|. .+|.++.+++..++...
T Consensus 2 ~~-~~~~~~~-~~~----------~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~ 46 (646)
T KOG0039|consen 2 EG-ISFQELK-ITD----------CSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSS 46 (646)
T ss_pred CC-cchhhhc-ccC----------CChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHH
Confidence 45 7888888 111 1235678888888887 79999999998888763
No 239
>PF08485 Polysacc_syn_2C: Polysaccharide biosynthesis protein C-terminal; InterPro: IPR013692 This domain is found to the C terminus of the IPR003869 from INTERPRO domain in bacterial polysaccharide biosynthesis enzymes including the capsule protein CapD [] and several putative epimerases/dehydratases. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=20.36 E-value=1.2e+02 Score=16.89 Aligned_cols=35 Identities=9% Similarity=0.283 Sum_probs=23.8
Q ss_pred CcccHHHHHH-------HHHhhCCCCCCCccHHHHHHHHHHc
Q psy4728 109 GTIDFDVLTR-------AFEAFDQEKKGSIPTDMVGTIMEML 143 (214)
Q Consensus 109 g~i~~~ef~~-------~f~~~D~~~~g~i~~~e~~~~l~~~ 143 (214)
..++|+.|.. ...-|..++.-.++.++++..|..+
T Consensus 3 RDLNY~kyf~eG~~~~~~~~dYnShNT~rL~ve~~k~lLl~L 44 (48)
T PF08485_consen 3 RDLNYDKYFSEGEEKISEVEDYNSHNTERLDVEEMKELLLKL 44 (48)
T ss_pred ccccchhhhhcCccccccccccCCCCccccCHHHHHHHHHhC
Confidence 3456666542 2345667788888999988888765
No 240
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=20.10 E-value=1.4e+02 Score=14.94 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=13.3
Q ss_pred CccHHHHHHHHHHcCCCCC
Q psy4728 130 SIPTDMVGTIMEMLGHPQS 148 (214)
Q Consensus 130 ~i~~~e~~~~l~~~~~~~~ 148 (214)
.++..+++..++..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4667788888887776543
No 241
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=20.08 E-value=2.9e+02 Score=18.58 Aligned_cols=41 Identities=20% Similarity=0.430 Sum_probs=32.5
Q ss_pred HHHhHcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy4728 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEI 103 (214)
Q Consensus 63 ~f~~~D~~~~g~i~~~el~~~l~~l~~~~~~~~~~~~~~~~ 103 (214)
+|...-..++..+|.+++.++|...|.......+..+++.+
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L 46 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEV 46 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 34444456777899999999999999888888888887777
No 242
>COG3611 DnaB Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]
Probab=20.07 E-value=5.4e+02 Score=21.78 Aligned_cols=154 Identities=12% Similarity=0.155 Sum_probs=76.5
Q ss_pred cccchHHHHHHHHHHhhhhhcChHHHHHHHHHHHHhHc-------------CCCCCceeHHHHHHHHHHcC-----CCCC
Q psy4728 31 GELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYD-------------REGNGYITTDVLREIISELD-----PNLD 92 (214)
Q Consensus 31 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D-------------~~~~g~i~~~el~~~l~~l~-----~~~~ 92 (214)
-..+++.|.+++....-+.-...+.....|..++..|. ...++.|+..++++.+...- ..|.
T Consensus 169 ~sFDfe~f~k~l~k~~l~~~~~~q~~k~~I~~lae~Y~~t~~qm~~~i~~s~v~~~ei~~~~Lrk~~~~~~~~e~~~~P~ 248 (417)
T COG3611 169 ESFDFELFKKLLVKQGLPRLAITQKDKLTIYSLAEKYKLTWDQMLNLIKNSLVNNDEIDTEELRKLLSQIYKNEHNTKPT 248 (417)
T ss_pred ccCCHHHHHHHHHhccchhhcccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhccCCCCc
Confidence 45688999998887655443444455555555555443 23346666666666665521 1221
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHH--HH------HHhhCCCCCCCccHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCC
Q psy4728 93 YEELNEMIEEIDSDGSGTIDFDVLT--RA------FEAFDQEKKGSIPTDMVGTIMEM-LGHPQSQEALNEIIKEVDEDG 163 (214)
Q Consensus 93 ~~~~~~~~~~~d~~~~g~i~~~ef~--~~------f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~ 163 (214)
........ .+ .-....++-+..- .- +..+-.-..|.|+.+|+.-+=.- ....+++..+.-++...-.-.
T Consensus 249 l~~~~~~~-~f-~~~~q~l~~e~k~~i~~~~~~~p~~~l~~~~~g~i~~~dl~lve~L~~~~~L~d~ViNvll~yvl~K~ 326 (417)
T COG3611 249 LSTKSNPE-DF-TEANQNLNTESKKVISDLELTFPLEKLKSIRDGKITLEDLKLVEELISDQNLLDGVINVLLDYVLLKN 326 (417)
T ss_pred eecccCcc-cc-cccccccchhHHHHHHhccccchHHHHHHHHcCCCCHHHHHHHHHHHHhcCCChhhhhhhhhhHhhhh
Confidence 11000000 00 0001111112110 00 11222235788887776544322 355678888887777654445
Q ss_pred CCceeHHHHHHHHHhhhhccCCC
Q psy4728 164 SGELEFNEFCTLAAKFLEEEEEN 186 (214)
Q Consensus 164 ~~~i~~~eF~~~l~~~~~~~~~~ 186 (214)
++.++-.--.+...+........
T Consensus 327 d~~L~k~Yi~kIA~~w~rk~vkt 349 (417)
T COG3611 327 DSKLNKKYILKIANDWARKKVKT 349 (417)
T ss_pred hhhccHHHHHHHHHHHHHhcccc
Confidence 66677666666665554444333
Done!