RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4728
(214 letters)
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 119 bits (301), Expect = 1e-34
Identities = 61/114 (53%), Positives = 88/114 (77%), Gaps = 1/114 (0%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAEL 60
+G I+E+LG Q++ + ++I E D G+G+++F+ F + A+FL EE NPE M+ EL
Sbjct: 35 QIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEV-NPEQMQQEL 93
Query: 61 REAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
REAF LYD+EGNGYI+TDV+REI++ELD L E+L+ MI+EID+DGSGT+DF+
Sbjct: 94 REAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFE 147
Score = 90.3 bits (225), Expect = 2e-23
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 54 EAMRAELREAFMLYDR-EGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTID 112
L AF ++ EG+G ++TD + I+ L + ++I+E D G+G ID
Sbjct: 9 SNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDID 68
Query: 113 FDV---------------------LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEA 151
FD L AF +D+E G I TD++ I+ L S E
Sbjct: 69 FDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSED 128
Query: 152 LNEIIKEVDEDGSGELEFNEFCTL 175
L+ +I E+D DGSG ++F EF +
Sbjct: 129 LDAMIDEIDADGSGTVDFEEFMGV 152
Score = 77.6 bits (192), Expect = 2e-18
Identities = 39/87 (44%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 119 AFEAFD-QEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAA 177
AF F+ E G + TD +G I+E+LG Q++ + ++I E D G+G+++F+ F + A
Sbjct: 18 AFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGA 77
Query: 178 KFLEEEEENPEAMRAELREAFMLYDRE 204
+FL EE NPE M+ ELREAF LYD+E
Sbjct: 78 RFL-GEEVNPEQMQQELREAFRLYDKE 103
Score = 37.5 bits (88), Expect = 8e-04
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
I+ L S E L+ +I E+D DGSG ++F EF +
Sbjct: 116 ILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGV 152
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 118 bits (298), Expect = 4e-34
Identities = 34/114 (29%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAEL 60
+G +M MLG + E L E+I EVDEDGSG ++F+EF + + ++++ + EL
Sbjct: 40 ELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDD--SKGKSEEEL 97
Query: 61 REAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+ F ++D+ +GYI + L+ ++ + +++ E++++ D + G ID+D
Sbjct: 98 SDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYD 151
Score = 93.0 bits (232), Expect = 3e-24
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 27/161 (16%)
Query: 36 NEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGN-GYITTDVLREIISELDPNLDYE 94
++ A + L EE+ + E + AF ++ G I+T L +++ L N E
Sbjct: 2 DDIYKAAVEQLTEEQ------KNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPE 55
Query: 95 ELNEMIEEIDSDGSGTIDFDV--------------------LTRAFEAFDQEKKGSIPTD 134
EL EMI+E+D DGSGT+DFD L+ F FD+ G I +
Sbjct: 56 ELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLE 115
Query: 135 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+ +++ G +++ + E++K+ D++ G ++++EF
Sbjct: 116 ELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 156
Score = 76.8 bits (190), Expect = 5e-18
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 119 AFEAFDQ-EKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAA 177
AF+ F + GSI T +G +M MLG + E L E+I EVDEDGSG ++F+EF +
Sbjct: 23 AFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMV 82
Query: 178 KFLEEEEENPEAMRAELREAFMLYDRE 204
+ + ++++ EL + F ++D+
Sbjct: 83 RSM--KDDSKGKSEEELSDLFRMFDKN 107
Score = 37.5 bits (88), Expect = 0.001
Identities = 7/37 (18%), Positives = 23/37 (62%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+++ G +++ + E++K+ D++ G ++++EF
Sbjct: 120 MLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 156
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 118 bits (297), Expect = 6e-34
Identities = 38/114 (33%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAEL 60
+GT+M MLG ++E L+ II+EVDEDGSG ++F EF + + ++E+ + EL
Sbjct: 41 ELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAK--GKSEEEL 98
Query: 61 REAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
F ++D+ +G+I + L EI+ ++ E++ +++++ D + G IDFD
Sbjct: 99 ANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFD 152
Score = 98.0 bits (245), Expect = 4e-26
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 20/142 (14%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
E M AE + AF ++D +G G I+T L ++ L N EEL+ +IEE+D DGSGTIDF
Sbjct: 16 EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF 75
Query: 114 D--------------------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALN 153
+ L F FD+ G I + +G I+ G ++E +
Sbjct: 76 EEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIE 135
Query: 154 EIIKEVDEDGSGELEFNEFCTL 175
+++K+ D++ G ++F+EF +
Sbjct: 136 DLMKDSDKNNDGRIDFDEFLKM 157
Score = 81.1 bits (201), Expect = 1e-19
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
AF+ FD + G I T +GT+M MLG ++E L+ II+EVDEDGSG ++F EF +
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVM 81
Query: 176 AAKFLEEEEENPEAMRAELREAFMLYDRE 204
+ ++E+ + EL F ++D+
Sbjct: 82 MVRQMKEDAK--GKSEEELANCFRIFDKN 108
Score = 37.9 bits (89), Expect = 7e-04
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
I+ G ++E + +++K+ D++ G ++F+EF +
Sbjct: 121 ILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKM 157
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 121 bits (305), Expect = 1e-33
Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 24/192 (12%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
++ + L ++ V+ D G + + +A A L
Sbjct: 145 KQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVAND------------LAALVA 192
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD-------- 114
F D NG ++ RE L + + + D D S + F
Sbjct: 193 DFRKIDTNSNGTLSRKEFREHFVRLGFDKK-SVQDALFRYADEDESDDVGFSEYVHLGLC 251
Query: 115 --VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQ-SQEALNEIIKEVDEDGSGELEFNE 171
VL + D +K G + + V ++E P+ +++ VD D S L + E
Sbjct: 252 LLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQE 311
Query: 172 FCTLAAKFLEEE 183
F L ++
Sbjct: 312 FVMLVLLMFHDD 323
Score = 104 bits (260), Expect = 6e-27
Identities = 33/209 (15%), Positives = 75/209 (35%), Gaps = 33/209 (15%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG 73
++ L ++K++++D SG L EE+ LR+ F+ G+G
Sbjct: 88 EKQRLASLLKDLEDDASGYNRLRPS----KPMLSEED------TNILRQLFLSSAVSGSG 137
Query: 74 YITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD----------VLTRAFEAF 123
+ L++++++ + L ++ +++D G + + L F
Sbjct: 138 KFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVANDLAALVADFRKI 197
Query: 124 DQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE 183
D G++ LG + + + + DED S ++ F+E+ L
Sbjct: 198 DTNSNGTLSRKEFREHFVRLGF-DKKSVQDALFRYADEDESDDVGFSEYVHLGLC----- 251
Query: 184 EENPEAMRAELREAFMLYDREEFMSIMID 212
LR + D ++ + +
Sbjct: 252 -------LLVLRILYAFADFDKSGQLSKE 273
Score = 28.2 bits (63), Expect = 2.0
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 27/110 (24%)
Query: 94 EELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALN 153
+E + E D +FD RA + + + L
Sbjct: 51 QEQKAKLAEYDQKVQN--EFDARERAEREREAARGDAAAEKQ---------------RLA 93
Query: 154 EIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDR 203
++K++++D SG L EE+ LR+ F+
Sbjct: 94 SLLKDLEDDASGYNRLRPS----KPMLSEED------TNILRQLFLSSAV 133
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 114 bits (288), Expect = 7e-33
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAEL 60
+ M LG +E + ++I E+D++G+G++ F +F T+ + + E++ + E+
Sbjct: 27 ELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDT-----KEEI 81
Query: 61 REAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+AF L+D + G I+ L+ + EL NL EEL EMI+E D DG G +
Sbjct: 82 LKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQ 135
Score = 99.1 bits (248), Expect = 7e-27
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
E + E+REAF L+D +G G I L+ + L EE+ +MI EID +G+G ++F
Sbjct: 2 EEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNF 61
Query: 114 -----------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEII 156
+ + +AF+ FD ++ G I + + + LG + E L E+I
Sbjct: 62 GDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMI 121
Query: 157 KEVDEDGSGELEFNEFCTLAAK 178
E D DG GE+ EF + K
Sbjct: 122 DEADRDGDGEVSEQEFLRIMKK 143
Score = 78.7 bits (195), Expect = 5e-19
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF+ FD + G+I + M LG +E + ++I E+D++G+G++ F +F T+ +
Sbjct: 11 AFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQ 70
Query: 179 FLEEEEENPEAMRAELREAFMLYDRE 204
+ E++ + E+ +AF L+D +
Sbjct: 71 KMSEKDT-----KEEILKAFKLFDDD 91
Score = 37.8 bits (89), Expect = 5e-04
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ + LG + E L E+I E D DG GE+ EF + K
Sbjct: 104 VAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMKK 143
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 114 bits (289), Expect = 1e-32
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
M LG +E + ++I E+D+DGSG ++F EF T+ + E + R E+ +
Sbjct: 51 KVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDS-----REEILK 105
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
AF L+D + +G IT LR + EL NL EEL EMI E D + ID D
Sbjct: 106 AFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDED 157
Score = 98.0 bits (245), Expect = 4e-26
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
E + E+REAF L+D +G+G I L+ + L EE+ +MI EID DGSGTIDF
Sbjct: 24 EEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDF 83
Query: 114 -----------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEII 156
+ + +AF FD + G+I + + + LG ++E L E+I
Sbjct: 84 EEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMI 143
Query: 157 KEVDEDGSGELEFNEFCTLAAK 178
E D + E++ +EF + K
Sbjct: 144 AEADRNDDNEIDEDEFIRIMKK 165
Score = 78.8 bits (195), Expect = 8e-19
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF+ FD + G+I + M LG +E + ++I E+D+DGSG ++F EF T+
Sbjct: 33 AFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTA 92
Query: 179 FLEEEEENPEAMRAELREAFMLYDRE 204
+ E + R E+ +AF L+D +
Sbjct: 93 KMGERDS-----REEILKAFRLFDDD 113
Score = 37.9 bits (89), Expect = 6e-04
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ + LG ++E L E+I E D + E++ +EF + K
Sbjct: 126 VAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKK 165
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 114 bits (288), Expect = 1e-32
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAEL 60
+ M+ LG + + ++I E D +G +++++F + + + + + E+
Sbjct: 44 ELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDP-----LDEI 98
Query: 61 REAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+ AF L+D + G I+ LR + EL L EEL MIEE D DG G I+ +
Sbjct: 99 KRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINEN 152
Score = 97.2 bits (243), Expect = 7e-26
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
E + E+ EAF L+D +G++ L+ + L L E+ ++I+E DS+G + +
Sbjct: 19 EEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKY 78
Query: 114 -----------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEII 156
D + RAF+ FD + G I + + + LG + E L +I
Sbjct: 79 DDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMI 138
Query: 157 KEVDEDGSGELEFNEFCTL 175
+E D DG GE+ NEF +
Sbjct: 139 EEFDLDGDGEINENEFIAI 157
Score = 79.1 bits (196), Expect = 6e-19
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF FD G + + M+ LG + + ++I E D +G +++++F + +
Sbjct: 28 AFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGE 87
Query: 179 FLEEEEENPEAMRAELREAFMLYDRE 204
+ + + E++ AF L+D +
Sbjct: 88 KILKRDP-----LDEIKRAFQLFDDD 108
Score = 36.4 bits (85), Expect = 0.003
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+ + LG + E L +I+E D DG GE+ NEF +
Sbjct: 121 VAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAI 157
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 114 bits (288), Expect = 2e-32
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 25/151 (16%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAEL 60
+GT+M LG ++ L ++I EVD DG+G ++F EF T+ A+ +++ + E+
Sbjct: 32 ELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDS-----EEEI 86
Query: 61 REAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD------ 114
REAF ++D++GNGYI+ LR +++ L L EE++EMI E D DG G ++++
Sbjct: 87 REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
Query: 115 --------------VLTRAFEAFDQEKKGSI 131
V+ A + +
Sbjct: 147 TAKGGGGGAAARKEVIRNKIRAIGKMARVFS 177
Score = 112 bits (282), Expect = 2e-31
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 25/179 (13%)
Query: 43 AKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEE 102
A L EE+ AE +EAF L+D++G+G ITT L ++ L N EL +MI E
Sbjct: 2 ADQLTEEQ------IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE 55
Query: 103 IDSDGSGTIDF-----------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGH 145
+D+DG+GTIDF + + AF FD++ G I + +M LG
Sbjct: 56 VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 115
Query: 146 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDRE 204
+ E ++E+I+E D DG G++ + EF + A + +R +
Sbjct: 116 KLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKG--GGGGAAARKEVIRNKIRAIGKM 172
Score = 64.1 bits (157), Expect = 4e-13
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAF 64
+M LG + E ++E+I+E D DG G++ + EF + A + +R
Sbjct: 109 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKGGGG--GAAARKEVIRNKI 166
Query: 65 MLYDREGNGYIT 76
+ +
Sbjct: 167 RAIGKMARVFSV 178
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 113 bits (285), Expect = 3e-32
Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAEL 60
+G M +G+ ++ L E+ ++++ + G ++F++F L L E + ++ EL
Sbjct: 32 DLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVK-EL 90
Query: 61 REAFMLYDREGNGYITTDVLREIISE-LDPNLDYEELNEMIEEIDSDGSGTIDFD 114
R+AF +D G+G I+T LRE + L + + ++ E+I ++D +G G +DF+
Sbjct: 91 RDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFE 145
Score = 96.1 bits (240), Expect = 2e-25
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
ELREAF +D++ +GYI L + + EL E+ ++I+ + G +DF
Sbjct: 7 PEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDF 66
Query: 114 D---------------------VLTRAFEAFDQEKKGSIPTDMVGTIM-EMLGHPQSQEA 151
D L AF FD G I T + M +LGH
Sbjct: 67 DDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRD 126
Query: 152 LNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ EII++VD +G G ++F EF + ++
Sbjct: 127 IEEIIRDVDLNGDGRVDFEEFVRMMSR 153
Score = 81.4 bits (202), Expect = 6e-20
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF FD++K G I +G M +G+ ++ L E+ ++++ + G ++F++F L
Sbjct: 16 AFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGP 75
Query: 179 FLEEEEENPEAMRAELREAFMLYDRE 204
L E + ++ ELR+AF +D
Sbjct: 76 KLLAETADMIGVK-ELRDAFREFDTN 100
Score = 38.7 bits (91), Expect = 3e-04
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+LGH + EII++VD +G G ++F EF + ++
Sbjct: 115 RALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMSR 153
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 118 bits (296), Expect = 2e-31
Identities = 43/114 (37%), Positives = 73/114 (64%), Gaps = 5/114 (4%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAEL 60
+GT+M LG ++ L ++I EVD DG+G ++F EF T+ A+ +++ + E+
Sbjct: 333 ELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDS-----EEEI 387
Query: 61 REAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
REAF ++D++GNGYI+ LR +++ L L EE++EMI E D DG G ++++
Sbjct: 388 REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 441
Score = 112 bits (281), Expect = 3e-29
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 20/193 (10%)
Query: 3 GTIMEMLG-HPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEEN--PEAMRAE 59
+ G + E E V+ ++F E + LE + E AE
Sbjct: 254 TIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNTRDQLTEEQIAE 313
Query: 60 LREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDV---- 115
+EAF L+D++G+G ITT L ++ L N EL +MI E+D+DG+GTIDF
Sbjct: 314 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTM 373
Query: 116 -------------LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDED 162
+ AF FD++ G I + +M LG + E ++E+I+E D D
Sbjct: 374 MARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADID 433
Query: 163 GSGELEFNEFCTL 175
G G++ + EF +
Sbjct: 434 GDGQVNYEEFVQM 446
Score = 106 bits (265), Expect = 5e-27
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 29/189 (15%)
Query: 32 ELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNL 91
L F +++ + AM + ++ ++ Y T ++ L +
Sbjct: 222 TLXVQCFSRYPDH-MKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRI 280
Query: 92 DYEELNEMIEEIDSDGSGTIDFD----------------VLTRAFEAFDQEKKGSIPTDM 135
+ ++ ID G I AF FD++ G+I T
Sbjct: 281 E-------LKGIDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKE 333
Query: 136 VGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELR 195
+GT+M LG ++ L ++I EVD DG+G ++F EF T+ A+ +++ + E+R
Sbjct: 334 LGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDS-----EEEIR 388
Query: 196 EAFMLYDRE 204
EAF ++D++
Sbjct: 389 EAFRVFDKD 397
Score = 37.2 bits (86), Expect = 0.002
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+ F ++ T E+ + + ++ ++ G ++F E +
Sbjct: 249 YIQERTIFFKDDGNYK------TRAEV------KFEGDTLVNRIELKG---IDFKEDGNI 293
Query: 176 AAKFLEEEEEN--PEAMRAELREAFMLYDREE 205
LE + E AE +EAF L+D++
Sbjct: 294 LGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDG 325
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 110 bits (277), Expect = 4e-31
Identities = 23/115 (20%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIK-EVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAE 59
+G + +G+ + + + +II + + L ++ L +E + +A +
Sbjct: 25 SLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTED 84
Query: 60 LREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+AF ++D+E G ++ LR +++ L L E++E+++ ++ D +G ID+
Sbjct: 85 FVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYK 139
Score = 85.0 bits (211), Expect = 3e-21
Identities = 26/139 (18%), Positives = 60/139 (43%), Gaps = 23/139 (16%)
Query: 57 RAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMI-EEIDSDGSGTIDFDV 115
++ F L+D++G G I D L + + + N + + ++I + + ++ D
Sbjct: 3 TRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQ 62
Query: 116 ----------------------LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALN 153
+AF+ FD+E G + + ++ LG + ++
Sbjct: 63 ITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVD 122
Query: 154 EIIKEVDEDGSGELEFNEF 172
E++K V+ D +GE+++ +F
Sbjct: 123 ELLKGVEVDSNGEIDYKKF 141
Score = 77.6 bits (192), Expect = 1e-18
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIK-EVDEDGSGELEFNEFCTLAA 177
F FD++ +G+I D +G + +G+ + + + +II + + L ++ L
Sbjct: 9 IFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIE 68
Query: 178 KFLEEEEENPEAMRAELREAFMLYDRE 204
+E + +A + +AF ++D+E
Sbjct: 69 VNEKELDATTKAKTEDFVKAFQVFDKE 95
Score = 35.3 bits (82), Expect = 0.005
Identities = 9/34 (26%), Positives = 22/34 (64%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEF 38
++ LG + ++E++K V+ D +GE+++ +F
Sbjct: 108 MLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKF 141
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 109 bits (274), Expect = 1e-30
Identities = 44/113 (38%), Positives = 72/113 (63%), Gaps = 5/113 (4%)
Query: 2 VGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELR 61
+GT+M LG ++ L ++I EVD DG+G ++F EF +L A+ ++E++ EL
Sbjct: 32 LGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDS-----EEELI 86
Query: 62 EAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
EAF ++DR+GNG I+ LR +++ L L +E++EMI E D DG G I+++
Sbjct: 87 EAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYE 139
Score = 95.6 bits (239), Expect = 2e-25
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 23/150 (15%)
Query: 43 AKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEE 102
A+ L EE+ AE +EAF L+D++G+G ITT L ++ L N EL +MI E
Sbjct: 1 AEQLTEEQ------IAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE 54
Query: 103 IDSDGSGTIDFDV-----------------LTRAFEAFDQEKKGSIPTDMVGTIMEMLGH 145
+D+DG+GTIDF L AF+ FD++ G I + +M LG
Sbjct: 55 VDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGE 114
Query: 146 PQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+ + ++E+I+E D DG G + + EF +
Sbjct: 115 KLTDDEVDEMIREADIDGDGHINYEEFVRM 144
Score = 75.6 bits (187), Expect = 1e-17
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 5/86 (5%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF FD++ G+I T +GT+M LG ++ L ++I EVD DG+G ++F EF +L A+
Sbjct: 15 AFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMAR 74
Query: 179 FLEEEEENPEAMRAELREAFMLYDRE 204
++E++ EL EAF ++DR+
Sbjct: 75 KMKEQDS-----EEELIEAFKVFDRD 95
Score = 35.5 bits (83), Expect = 0.004
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+M LG + + ++E+I+E D DG G + + EF +
Sbjct: 108 VMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRM 144
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 105 bits (265), Expect = 2e-29
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAEL 60
+ T+++ G A NE+ E D G+G+++F EF ++ + +++ L
Sbjct: 27 GLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQTTS-----EDIL 81
Query: 61 REAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
R+AF +D EG GYI L++ + L L E E + +++ G I +D
Sbjct: 82 RQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITETE-KGQIRYD 134
Score = 90.6 bits (226), Expect = 2e-23
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
+ +E +EAF L+D E G+IT + L+ ++ + ++ NEM E D+ G+G I F
Sbjct: 2 DDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQF 61
Query: 114 -----------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEII 156
D+L +AF FD E G IP + + LG E +
Sbjct: 62 PEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFL 121
Query: 157 KEVDEDGSGELEFNEFCTL 175
+ + G++ ++ F
Sbjct: 122 GITETE-KGQIRYDNFINT 139
Score = 78.3 bits (194), Expect = 8e-19
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AFE FD E+ G I + + T+++ G A NE+ E D G+G+++F EF ++ +
Sbjct: 11 AFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGR 70
Query: 179 FLEEEEENPEAMRAELREAFMLYDRE 204
+++ LR+AF +D E
Sbjct: 71 RMKQTTS-----EDILRQAFRTFDPE 91
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 104 bits (261), Expect = 9e-29
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAEL 60
+ T+M LG S+ + +++ E+D DG+ +EF+EF L ++ L+ + EL
Sbjct: 32 ELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDS-----EQEL 86
Query: 61 REAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
EAF ++D+ G+G I+ L+ +++ + L E++EM+ E+ DGSG I+
Sbjct: 87 LEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIK 139
Score = 91.4 bits (228), Expect = 8e-24
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 43 AKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEE 102
++ L EE+ AE +EAF L+D++ +G I+ L ++ L + E+ +++ E
Sbjct: 2 SQNLTEEQ------IAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNE 55
Query: 103 IDSDGSGTIDFDV-----------------LTRAFEAFDQEKKGSIPTDMVGTIMEMLGH 145
ID DG+ I+F L AF+ FD+ G I + ++ +G
Sbjct: 56 IDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGE 115
Query: 146 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ ++E+++EV DGSGE+ +F L +K
Sbjct: 116 KLTDAEVDEMLREVS-DGSGEINIKQFAALLSK 147
Score = 75.6 bits (187), Expect = 8e-18
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF FD++ GSI + T+M LG S+ + +++ E+D DG+ +EF+EF L ++
Sbjct: 16 AFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSR 75
Query: 179 FLEEEEENPEAMRAELREAFMLYDRE 204
L+ + EL EAF ++D+
Sbjct: 76 QLKCNDS-----EQELLEAFKVFDKN 96
Score = 31.7 bits (73), Expect = 0.077
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
++ +G + ++E+++EV DGSGE+ +F L +K
Sbjct: 109 VLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALLSK 147
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 103 bits (259), Expect = 6e-28
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
+ G P S +++ D++ SGE+ F+EF L +RE
Sbjct: 50 NAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDL------------HHFILSMRE 97
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD-------- 114
F D G+G + ++ +R + + + ++ + D G++ FD
Sbjct: 98 GFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIF 157
Query: 115 --VLTRAFEAFDQEKKGSI 131
+ F +D+E+ G +
Sbjct: 158 VCRVRNVFAFYDRERTGQV 176
Score = 103 bits (258), Expect = 7e-28
Identities = 33/181 (18%), Positives = 61/181 (33%), Gaps = 32/181 (17%)
Query: 51 ENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGT 110
EL E F D +G+G I+ L +S +++ D + SG
Sbjct: 20 ARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGE 79
Query: 111 IDFD----------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVD 160
I FD + F D G + ++ V + G+ S++ ++++ D
Sbjct: 80 ITFDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFD 139
Query: 161 EDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDR----------EEFMSIM 210
G L F+++ L+ +R F YDR + F+
Sbjct: 140 RQRRGSLGFDDYVELSIFV------------CRVRNVFAFYDRERTGQVTFTFDTFIGGS 187
Query: 211 I 211
+
Sbjct: 188 V 188
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 103 bits (258), Expect = 6e-28
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 26/179 (14%)
Query: 43 AKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEE 102
A+ L EEE L+E F + D + +G IT D L++ + + L E+ ++++
Sbjct: 1 AERLSEEE------IGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDA 54
Query: 103 IDSDGSGTIDF----------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHP 146
D D SGTID+ + L AF FD++ G I D + + G
Sbjct: 55 ADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG-- 112
Query: 147 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRA--ELREAFMLYDR 203
++++IKE+D+D G++++ EF + K MR LR+A L D
Sbjct: 113 LDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDN 171
Score = 102 bits (256), Expect = 2e-27
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
++ +G + + +++ D D SG +++ EF + E E L
Sbjct: 33 KDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREE------NLVS 86
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
AF +D++G+GYIT D +++ + LD +++MI+EID D G ID+
Sbjct: 87 AFSYFDKDGSGYITLDEIQQACKDF--GLDDIHIDDMIKEIDQDNDGQIDYG 136
Score = 53.0 bits (128), Expect = 4e-09
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRA--ELREAFMLYDREG 71
++++IKE+D+D G++++ EF + K MR LR+A L D
Sbjct: 114 DDIHIDDMIKEIDQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGS 173
Query: 72 NGYITTDVLRE 82
N I
Sbjct: 174 NQVIEGYFKHH 184
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 100 bits (251), Expect = 2e-27
Identities = 23/112 (20%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
+ ++++ L I K +D DG+GE++ NEF ++ + + L+
Sbjct: 23 KAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDK---IGLKV 79
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+ L D +G+G +T + + + E++ E + + D++G G I +
Sbjct: 80 LYKLMDVDGDGKLTKEEVTSFFKK----HGIEKVAEQVMKADANGDGYITLE 127
Score = 88.7 bits (221), Expect = 7e-23
Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 23/135 (17%)
Query: 60 LREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD----- 114
F D G+G ++ + ++ +S+ + + L + + ID+DG+G ID +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Query: 115 --------------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVD 160
L ++ D + G + + V + + G E + E + + D
Sbjct: 62 YGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGI----EKVAEQVMKAD 117
Query: 161 EDGSGELEFNEFCTL 175
+G G + EF
Sbjct: 118 ANGDGYITLEEFLEF 132
Score = 72.2 bits (178), Expect = 1e-16
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
F+ D G++ + V + ++++ L I K +D DG+GE++ NEF
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Query: 176 AAKFLEEEEENPEAMRAELREAFMLYDR 203
++ + + L+ + L D
Sbjct: 62 YGSIQGQDLSDDK---IGLKVLYKLMDV 86
Score = 32.1 bits (74), Expect = 0.047
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+ G E + E + + D +G G + EF
Sbjct: 100 FFKKHGI----EKVAEQVMKADANGDGYITLEEFLEF 132
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 101 bits (253), Expect = 4e-27
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 10/122 (8%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSG-----ELEFNEFCTLAAKFLEEE-----EEN 52
I L Q +++ E G G E+ F +F + E
Sbjct: 48 DDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNE 107
Query: 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTID 112
P +R F ++D++G+G IT D + + E+ D D +G +D
Sbjct: 108 PTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLD 167
Query: 113 FD 114
D
Sbjct: 168 VD 169
Score = 84.4 bits (209), Expect = 1e-20
Identities = 33/186 (17%), Positives = 56/186 (30%), Gaps = 43/186 (23%)
Query: 41 LAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTD-----VLREIISELDPNLDYEE 95
L F + F D GNG IT D +I ++L+ + +
Sbjct: 9 LKTDFDNPRW------IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTK 62
Query: 96 LNEMIEEIDSDGSGT-----IDFD---------------------------VLTRAFEAF 123
+++ E G G I F F+ F
Sbjct: 63 RHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIF 122
Query: 124 DQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE 183
D++ G+I D ++ G SQE + D D +G+L+ +E F
Sbjct: 123 DKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGFWYTL 182
Query: 184 EENPEA 189
+ +
Sbjct: 183 DPEADG 188
Score = 59.8 bits (145), Expect = 2e-11
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 25/139 (17%)
Query: 75 ITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTD 134
+++ ++ ++ D + M + +D +G+G I D +
Sbjct: 1 MSSKYAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKAS------------- 47
Query: 135 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSG-----ELEFNEFCTLAAKFLEEE-----E 184
I L Q +++ E G G E+ F +F + E
Sbjct: 48 --DDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWAR 105
Query: 185 ENPEAMRAELREAFMLYDR 203
P +R F ++D+
Sbjct: 106 NEPTLIREWGDAVFDIFDK 124
Score = 43.6 bits (103), Expect = 1e-05
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEA 55
++ G SQE + D D +G+L+ +E F + +
Sbjct: 138 YGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGFWYTLDPEADG 188
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 99.5 bits (249), Expect = 1e-26
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 35 FNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYE 94
N+F +A + + E E A L+E F + D + +G IT + L+ + + NL
Sbjct: 6 MNKFKKMALRVIAES--LSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKES 63
Query: 95 ELNEMIEEIDSDGSGTIDF----------------DVLTRAFEAFDQEKKGSIPTDMVGT 138
E+ ++++ D D SGTID+ D L AF FD++ G I D +
Sbjct: 64 EILDLMQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQ 123
Query: 139 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
E G + E++++VD+D G +++NEF +
Sbjct: 124 ACEEFG--VEDVRIEELMRDVDQDNDGRIDYNEFVAM 158
Score = 98.7 bits (247), Expect = 2e-26
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
++ +G + + ++++ D D SG +++ EF + E E L
Sbjct: 50 KAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHLNKIERE------DHLFA 103
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
AF +D++G+GYIT D L++ E ++ + E++ ++D D G ID++
Sbjct: 104 AFTYFDKDGSGYITPDELQQACEEF--GVEDVRIEELMRDVDQDNDGRIDYN 153
Score = 69.9 bits (172), Expect = 2e-15
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
L F D +K G I + + ++ +G + + ++++ D D SG +++ EF
Sbjct: 29 LKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAA 88
Query: 176 AAKFLEEEEENPEAMRAELREAFMLYDR 203
+ E E L AF +D+
Sbjct: 89 TLHLNKIERE------DHLFAAFTYFDK 110
Score = 33.6 bits (78), Expect = 0.019
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTL 41
+ E++++VD+D G +++NEF +
Sbjct: 131 EDVRIEELMRDVDQDNDGRIDYNEFVAM 158
Score = 25.9 bits (58), Expect = 7.6
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 169 FNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDRE 204
N+F +A + + E E A L+E F + D +
Sbjct: 6 MNKFKKMALRVIAES--LSEEEIAGLKEMFNMIDAD 39
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 98.8 bits (247), Expect = 1e-26
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 2 VGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELR 61
+G+ + LG + LN I +++ + F T+ K ++ E + E+
Sbjct: 27 LGSALRSLGKNPTNAELNTIKGQLNAKE---FDLATFKTVYRKPIKTPTEQSK----EML 79
Query: 62 EAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+AF D+EGNG I LR+++ L L E+ E+++E+ G G I+++
Sbjct: 80 DAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYE 132
Score = 87.2 bits (217), Expect = 4e-22
Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 58 AELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF---- 113
+++E F ++D++ +G ++ + L + L N ELN + ++++ F
Sbjct: 5 DQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVY 64
Query: 114 -----------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDED 162
+ AF A D+E G+I + ++ LG + + E++KEV
Sbjct: 65 RKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVS 124
Query: 163 GSGELEFNEF 172
G G + + F
Sbjct: 125 GDGAINYESF 134
Score = 66.8 bits (164), Expect = 2e-14
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
F+ FD++ G + + +G+ + LG + LN I +++ + F T+ K
Sbjct: 10 CFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKE---FDLATFKTVYRK 66
Query: 179 FLEEEEENPEAMRAELREAFMLYDRE 204
++ E + E+ +AF D+E
Sbjct: 67 PIKTPTEQSK----EMLDAFRALDKE 88
Score = 34.8 bits (81), Expect = 0.006
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEF 38
++ LG + + E++KEV G G + + F
Sbjct: 101 LLLNLGDALTSSEVEELMKEVSVSGDGAINYESF 134
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 98.4 bits (246), Expect = 2e-26
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAEL 60
+G + LG E + + + G L F EF ++ E+ +
Sbjct: 32 KLGDVCRCLGINPRNEDVFAVG-GTHKMGEKSLPFEEFLPAYEGLMDCEQGTFA----DY 86
Query: 61 REAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEID--SDGSGTIDFD 114
EAF +DREG G+I+ LR +++ L L E+++E+I+ D D G + ++
Sbjct: 87 MEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYE 142
Score = 76.4 bits (189), Expect = 5e-18
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 23/141 (16%)
Query: 54 EAMRAELREAFMLYD--REGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTI 111
+ +L++ F L+D +G + L ++ L N E++ + G ++
Sbjct: 5 QDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV-FAVGGTHKMGEKSL 63
Query: 112 DFDV------------------LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALN 153
F+ AF+ FD+E +G I + ++ LG S E ++
Sbjct: 64 PFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVD 123
Query: 154 EIIKEVD--EDGSGELEFNEF 172
EIIK D ED G +++ +F
Sbjct: 124 EIIKLTDLQEDLEGNVKYEDF 144
Score = 66.8 bits (164), Expect = 2e-14
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 119 AFEAFDQEK--KGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLA 176
FE FD G++ +G + LG E + + + G L F EF
Sbjct: 14 VFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVG-GTHKMGEKSLPFEEFLPAY 72
Query: 177 AKFLEEEEENPEAMRAELREAFMLYDREE 205
++ E+ + EAF +DRE
Sbjct: 73 EGLMDCEQGTFA----DYMEAFKTFDREG 97
Score = 30.6 bits (70), Expect = 0.21
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 5 IMEMLGHPQSQEALNEIIKEVD--EDGSGELEFNEF 38
++ LG S E ++EIIK D ED G +++ +F
Sbjct: 109 VLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDF 144
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 96.9 bits (242), Expect = 1e-25
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 23/140 (16%)
Query: 3 GTIMEMLGH-PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELR 61
+ P + + II D + + F+EF + + +
Sbjct: 30 QQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYI------------TDWQ 77
Query: 62 EAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD------- 114
F YDR+ +G I + L++ +S L + + +I + D G G I FD
Sbjct: 78 NVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCI 137
Query: 115 ---VLTRAFEAFDQEKKGSI 131
LT F +D ++ G I
Sbjct: 138 VLQRLTDIFRRYDTDQDGWI 157
Score = 93.1 bits (232), Expect = 4e-24
Identities = 28/176 (15%), Positives = 65/176 (36%), Gaps = 33/176 (18%)
Query: 57 RAELREAFMLYDREGNGYITTDVLREIISELDPN-LDYEELNEMIEEIDSDGSGTIDFD- 114
++ L F D++ +G I+ L++ +S + + +I D + ++F
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 65
Query: 115 ---------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSG 165
F +D++ G I + + + G+ S + + +I++ D G G
Sbjct: 66 FTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRG 125
Query: 166 ELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDR----------EEFMSIMI 211
++ F++F L + F YD E+++S++
Sbjct: 126 QIAFDDFIQGCIVL------------QRLTDIFRRYDTDQDGWIQVSYEQYLSMVF 169
Score = 61.5 bits (150), Expect = 3e-12
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 112 DFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGH-PQSQEALNEIIKEVDEDGSGELEFN 170
D L F+ D+++ G I + + P + + II D + + F+
Sbjct: 5 DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFS 64
Query: 171 EFCTLAAKFLEEEEENPEAMRAELREAFMLYDR 203
EF + + + F YDR
Sbjct: 65 EFTGVWKYI------------TDWQNVFRTYDR 85
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 97.3 bits (243), Expect = 1e-25
Identities = 21/114 (18%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
++ +G+ + ++++++++D + SG++ + +F ++
Sbjct: 80 LDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKE------VCLI 133
Query: 63 AFMLYDREGNGYITTDVLREIIS--ELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
F +D +GNG I+ + L+ I +++ L + ++ +++E+D +G G IDF
Sbjct: 134 PFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFH 187
Score = 96.9 bits (242), Expect = 2e-25
Identities = 34/154 (22%), Positives = 74/154 (48%), Gaps = 24/154 (15%)
Query: 40 TLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEM 99
T+ AK L + E LR F+ D + +G +++ + + + ++ +++++
Sbjct: 45 TIIAKHLCDVE------INNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQV 98
Query: 100 IEEIDSDGSGTIDF----------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEM- 142
+ +IDS+ SG I + +V F+ FD + G I + + I
Sbjct: 99 LRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRD 158
Query: 143 -LGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+ +P +A++ +++EVD +G GE++F+EF +
Sbjct: 159 DIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLM 192
Score = 68.0 bits (167), Expect = 2e-14
Identities = 12/88 (13%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
L F A D + G++ + + ++ +G+ + ++++++++D + SG++ + +F
Sbjct: 59 LRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAA 118
Query: 176 AAKFLEEEEENPEAMRAELREAFMLYDR 203
++ F +D
Sbjct: 119 TIDKQTYLKKE------VCLIPFKFFDI 140
Score = 38.0 bits (89), Expect = 8e-04
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 9 LGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+ +P +A++ +++EVD +G GE++F+EF +
Sbjct: 160 IENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLM 192
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 97.2 bits (242), Expect = 2e-25
Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 10/133 (7%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSG-----ELEFNEFCTLAAKFLEEE-----E 50
++ LG Q ++ E G+G E ++ + K +E +
Sbjct: 42 ASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAK 101
Query: 51 ENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGT 110
P +R F + D++ NG IT D + E+ E D D SG
Sbjct: 102 NEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQ 161
Query: 111 IDFDVLTRAFEAF 123
+D D +TR F
Sbjct: 162 LDVDEMTRQHLGF 174
Score = 84.9 bits (210), Expect = 9e-21
Identities = 33/182 (18%), Positives = 57/182 (31%), Gaps = 38/182 (20%)
Query: 46 LEEEEENPEAMRAELREAFMLYDREGNGYITTD-----VLREIISELDPNLDYEELNEMI 100
L + +NP + F D NG I+ D +I+ L + + ++
Sbjct: 5 LTSDFDNPR-WIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDA 63
Query: 101 EEIDSDGSGT-----IDFD---------------------------VLTRAFEAFDQEKK 128
E G+G D+ F+ D+++
Sbjct: 64 VEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQN 123
Query: 129 GSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPE 188
G+I D + G QS E E + D D SG+L+ +E F + E
Sbjct: 124 GAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWYTMDPACE 183
Query: 189 AM 190
+
Sbjct: 184 KL 185
Score = 42.9 bits (101), Expect = 2e-05
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAM 56
+ G QS E E + D D SG+L+ +E F + E +
Sbjct: 134 YTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWYTMDPACEKL 185
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 95.8 bits (239), Expect = 5e-25
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
+E G + ++ ++D DGSG++++ EF A + ++ +
Sbjct: 75 KKGLEKDGLKLPYN-FDLLLDQIDSDGSGKIDYTEFIAAALDRKQLSKK-------LIYC 126
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNL-----DYEELNEMIEEIDSDGSGTIDFD 114
AF ++D + +G ITT L I+ + D + MI ++D + G IDF
Sbjct: 127 AFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFH 183
Score = 92.3 bits (230), Expect = 1e-23
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 27/156 (17%)
Query: 40 TLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEM 99
T+ A+ + + +L+ F++ D +G GYIT + L++ + + L + +
Sbjct: 40 TIIAQQSNDYD------VEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLP-YNFDLL 92
Query: 100 IEEIDSDGSGTIDF---------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLG 144
+++IDSDGSG ID+ ++ AF FD + G I T + I+
Sbjct: 93 LDQIDSDGSGKIDYTEFIAAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGN 152
Query: 145 HPQSQ-----EALNEIIKEVDEDGSGELEFNEFCTL 175
+ + +I++VD++ G+++F+EF +
Sbjct: 153 KKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEM 188
Score = 68.0 bits (167), Expect = 2e-14
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
L F D++ KG I + + +E G + ++ ++D DGSG++++ EF
Sbjct: 54 LKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYN-FDLLLDQIDSDGSGKIDYTEFIAA 112
Query: 176 AAKFLEEEEENPEAMRAELREAFMLYDR 203
A + ++ + AF ++D
Sbjct: 113 ALDRKQLSKK-------LIYCAFRVFDV 133
Score = 34.1 bits (79), Expect = 0.016
Identities = 7/41 (17%), Positives = 21/41 (51%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+ + + + +I++VD++ G+++F+EF +
Sbjct: 148 LYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEM 188
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 93.4 bits (233), Expect = 1e-24
Identities = 23/116 (19%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDED--GSGELEFNEFCTLAAKFLEEEEENPEAMRA 58
G +M LG + + +++ D S ++F F + + +
Sbjct: 31 QCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYE--- 87
Query: 59 ELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+ E F ++D+EGNG + LR +++ L + EE+ ++ D +G I+++
Sbjct: 88 DYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG-HEDSNGCINYE 142
Score = 78.4 bits (194), Expect = 9e-19
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 22/143 (15%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSD--GSGTI 111
+ E +EAF L+DR G+G I +++ L N E+ +++ SD S +
Sbjct: 6 KDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRV 65
Query: 112 DFDV-------------------LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEAL 152
DF+ F FD+E G + + ++ LG ++E +
Sbjct: 66 DFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEV 125
Query: 153 NEIIKEVDEDGSGELEFNEFCTL 175
++ ED +G + + F
Sbjct: 126 ETVLAG-HEDSNGCINYEAFLKH 147
Score = 69.5 bits (171), Expect = 2e-15
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDED--GSGELEFNEFCTLA 176
AFE FD+ G I G +M LG + + +++ D S ++F F +
Sbjct: 15 AFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPML 74
Query: 177 AKFLEEEEENPEAMRAELREAFMLYDREEFMSIMID 212
+ + + E F ++D+E +M
Sbjct: 75 QAVAKNRGQGTY---EDYLEGFRVFDKEGNGKVMGA 107
Score = 28.3 bits (64), Expect = 0.98
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
++ LG ++E + ++ ED +G + + F
Sbjct: 112 VLTTLGEKMTEEEVETVLAG-HEDSNGCINYEAFLKH 147
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 93.0 bits (232), Expect = 3e-24
Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 2 VGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELR 61
VG ++ LG ++ +++ + G + E + + ++ E
Sbjct: 33 VGDLLRCLGMNPTEAQVHQHG-GTKKMGEKAYKLEEILPIYEEMSSKDTGTAAD---EFM 88
Query: 62 EAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEID--SDGSGTIDFD 114
EAF +DREG G I++ +R ++ L + ++ N++ D D G I ++
Sbjct: 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYE 143
Score = 73.8 bits (182), Expect = 6e-17
Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 26/156 (16%)
Query: 54 EAMRAELREAFMLYD--REGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTI 111
+ E+RE F L+D +G + + +++ L N ++++ G
Sbjct: 5 KDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGG-TKKMGEKAY 63
Query: 112 DFD-------------------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEAL 152
+ AF+ FD+E +G I + + +++MLG +++
Sbjct: 64 KLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQC 123
Query: 153 NEIIKEVD--EDGSGELEFNEFCT--LAAKFLEEEE 184
N+I D ED G +++ + +A F ++ +
Sbjct: 124 NDIFTFCDIREDIDGNIKYEDLMKKVMAGPFPDKSD 159
Score = 64.1 bits (157), Expect = 3e-13
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 119 AFEAFDQEKK--GSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLA 176
F+ FD G + VG ++ LG ++ +++ + G + E +
Sbjct: 14 VFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEKAYKLEEILPIY 72
Query: 177 AKFLEEEEENPEAMRAELREAFMLYDREE 205
+ ++ E EAF +DRE
Sbjct: 73 EEMSSKDTGTAA---DEFMEAFKTFDREG 98
Score = 30.2 bits (69), Expect = 0.24
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 5 IMEMLGHPQSQEALNEIIKEVD--EDGSGELEFNEFCT--LAAKFLEEEE 50
+++MLG +++ N+I D ED G +++ + +A F ++ +
Sbjct: 110 VLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPFPDKSD 159
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 91.1 bits (227), Expect = 1e-23
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 2 VGTIMEMLGHPQSQEALNEIIKEVDED--GSGELEFNEFCTLAAKFLEEEEENPEAMRAE 59
VG I LG + +N+I+ ++ + + F EF + +++ +
Sbjct: 30 VGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPMLQAAANNKDQGTFE---D 86
Query: 60 LREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
E ++D+EGNG + LR +++ L + EE+ E+++ + D +G I+++
Sbjct: 87 FVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQE-DSNGCINYE 140
Score = 78.7 bits (195), Expect = 6e-19
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 22/140 (15%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSD--GSGTI 111
+A + +EAF+L+DR G+ IT + +I L N E+N+++ + + I
Sbjct: 4 KAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAI 63
Query: 112 DFD-------------------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEAL 152
F+ FD+E G++ + ++ LG ++E +
Sbjct: 64 TFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEV 123
Query: 153 NEIIKEVDEDGSGELEFNEF 172
E++K ED +G + + F
Sbjct: 124 EELMKG-QEDSNGCINYEAF 142
Score = 67.9 bits (167), Expect = 6e-15
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDED--GSGELEFNEFCTLA 176
AF FD+ I VG I LG + +N+I+ ++ + + F EF +
Sbjct: 13 AFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPML 72
Query: 177 AKFLEEEEENPEAMRAELREAFMLYDREE 205
+++ + E ++D+E
Sbjct: 73 QAAANNKDQGTF---EDFVEGLRVFDKEG 98
Score = 27.5 bits (62), Expect = 2.0
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEF 38
++ LG ++E + E++K ED +G + + F
Sbjct: 110 VLATLGEKMTEEEVEELMKG-QEDSNGCINYEAF 142
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 90.6 bits (226), Expect = 1e-23
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
++ +G + E L ++ E G + F F T+ + L + +R
Sbjct: 30 HDMLASMGKNPTDEYLEGMMSE----APGPINFTMFLTMFGEKLNGTDP-----EDVIRN 80
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
AF +D E +G+I D LRE+++ + EE++EM E D G ++
Sbjct: 81 AFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYV 132
Score = 85.6 bits (213), Expect = 1e-21
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 21/139 (15%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
++ E +EAF + D+ +G+I + L ++++ + N E L M+ E G I+F
Sbjct: 3 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE----APGPINF 58
Query: 114 -----------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEII 156
DV+ AF FD+E G I D + ++ +G + E ++E+
Sbjct: 59 TMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMY 118
Query: 157 KEVDEDGSGELEFNEFCTL 175
+E D G + EF +
Sbjct: 119 REAPIDKKGNFNYVEFTRI 137
Score = 60.6 bits (148), Expect = 3e-12
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF DQ + G I + + ++ +G + E L ++ E G + F F T+ +
Sbjct: 12 AFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE----APGPINFTMFLTMFGE 67
Query: 179 FLEEEEENPEAMRAELREAFMLYDRE 204
L + +R AF +D E
Sbjct: 68 KLNGTDP-----EDVIRNAFACFDEE 88
Score = 34.8 bits (81), Expect = 0.007
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
++ +G + E ++E+ +E D G + EF +
Sbjct: 101 LLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRI 137
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 92.0 bits (229), Expect = 1e-23
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
G + L Q + ++ I++ VD D +G +E++EF T+ L
Sbjct: 74 GDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRE------RLLA 127
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
AF +D +G+G IT + L + +D E +++++E D + G +DF+
Sbjct: 128 AFQQFDSDGSGKITNEELGRLFGVT--EVDDETWHQVLQECDKNNDGEVDFE 177
Score = 83.5 bits (207), Expect = 2e-20
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 35/161 (21%)
Query: 42 AAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLRE-----------IISELDPN 90
+K EE EL + F D G+G + L E +S+LD +
Sbjct: 30 GSKLTTLEE------TKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSS 83
Query: 91 LDYEELNEMIEEIDSDGSGTIDF----------------DVLTRAFEAFDQEKKGSIPTD 134
E++ +++ +D D +G I++ + L AF+ FD + G I +
Sbjct: 84 QIEAEVDHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNE 143
Query: 135 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+G + E +++++E D++ GE++F EF +
Sbjct: 144 ELGRLFG--VTEVDDETWHQVLQECDKNNDGEVDFEEFVEM 182
Score = 66.5 bits (163), Expect = 5e-14
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 79 VLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGT 138
+ + S+L + +EL ++ ++D++G G +D L + Q K G
Sbjct: 25 AMLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWK---------GD 75
Query: 139 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAF 198
+ L Q + ++ I++ VD D +G +E++EF T+ L AF
Sbjct: 76 TVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRE------RLLAAF 129
Query: 199 MLYDR 203
+D
Sbjct: 130 QQFDS 134
Score = 34.6 bits (80), Expect = 0.013
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 8 MLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
E +++++E D++ GE++F EF +
Sbjct: 149 FGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEM 182
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 91.1 bits (227), Expect = 2e-23
Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
+G + E + + ++ SG + F F T+ + L+ + +
Sbjct: 48 RETFAAMGRLNVKN---EELDAMIKEASGPINFTVFLTMFGEKLKGADP-----EDVIMG 99
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
AF + D +G G I L E+++ EE+ M D +G +D+
Sbjct: 100 AFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYK 151
Score = 85.7 bits (213), Expect = 2e-21
Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 20/149 (13%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
E + +EAF + D+ +G I D LRE + + E ++ + + SG I+F
Sbjct: 21 ETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNE---ELDAMIKEASGPINF 77
Query: 114 -----------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEII 156
DV+ AF+ D + KGSI + ++ G + E + +
Sbjct: 78 TVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMW 137
Query: 157 KEVDEDGSGELEFNEFCTLAAKFLEEEEE 185
D +G +++ C + + E E
Sbjct: 138 AAFPPDVAGNVDYKNICYVITHGEDAEGE 166
Score = 60.7 bits (148), Expect = 5e-12
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF DQ G I D + +G + E + + ++ SG + F F T+ +
Sbjct: 30 AFTVIDQNADGIIDKDDLRETFAAMGRLNVKN---EELDAMIKEASGPINFTVFLTMFGE 86
Query: 179 FLEEEEENPEAMRAELREAFMLYDRE 204
L+ + + AF + D +
Sbjct: 87 KLKGADP-----EDVIMGAFKVLDPD 107
Score = 38.0 bits (89), Expect = 7e-04
Identities = 7/47 (14%), Positives = 18/47 (38%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEE 51
++ G + E + + D +G +++ C + + E E
Sbjct: 120 LLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVITHGEDAEGE 166
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 91.5 bits (227), Expect = 9e-23
Identities = 32/219 (14%), Positives = 70/219 (31%), Gaps = 46/219 (21%)
Query: 3 GTIMEMLGH------PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK---FLEEEEENP 53
+++ L + + + + + G++ E + FL
Sbjct: 39 QNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQ 98
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISEL--------DPNLDYEELNEMIEEIDS 105
E + + YD + +G+I T+ L+ + +L D E + M++ DS
Sbjct: 99 LKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDS 158
Query: 106 DGSGTIDFD------------------------VLTRAFEAFDQEKKGSIPTDMVGTIME 141
+ G ++ +AFE +DQ+ G I + + +++
Sbjct: 159 NNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLK 218
Query: 142 MLGHPQSQEALNEIIKE-----VDEDGSGELEFNEFCTL 175
L QE I + G+L + +
Sbjct: 219 DLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALI 257
Score = 89.5 bits (222), Expect = 5e-22
Identities = 31/194 (15%), Positives = 67/194 (34%), Gaps = 41/194 (21%)
Query: 51 ENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNL------DYEELNEMIEEID 104
++ ++ E ++ +D +G+GY+ L+ +I EL E+ +++
Sbjct: 9 QSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYG 68
Query: 105 SDGSGTIDFDV-------------------------LTRAFEAFDQEKKGSIPTDMVGTI 139
G I + + +D + G I T+ +
Sbjct: 69 QRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNF 128
Query: 140 MEMLGHPQSQ--------EALNEIIKEVDEDGSGELEFNEFCTLAAK--FLEEEEENPEA 189
++ L ++ E + ++K D + G+LE E L + + +
Sbjct: 129 LKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKM 188
Query: 190 MRAELREAFMLYDR 203
E +AF LYD+
Sbjct: 189 CGKEFNKAFELYDQ 202
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 88.7 bits (221), Expect = 1e-22
Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
I E LG + L ++KE G L F F ++ + L + +R
Sbjct: 41 KAISEQLGRAPDDKELTAMLKEAP----GPLNFTMFLSIFSDKLSGTDS-----EETIRN 91
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEA 122
AF ++D + + + +++++ + N + +E+ +E +G G D+ T +
Sbjct: 92 AFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEG-GKFDYVKFTAMIKG 150
Query: 123 FDQEK 127
+E+
Sbjct: 151 SGEEE 155
Score = 81.8 bits (203), Expect = 4e-20
Identities = 30/148 (20%), Positives = 69/148 (46%), Gaps = 22/148 (14%)
Query: 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTID 112
P+ E++EAF + D + +G+++ + ++ I +L D +EL M++E G ++
Sbjct: 13 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE----APGPLN 68
Query: 113 F-----------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEI 155
F + + AF FD+++ + + + ++E +G +++ +
Sbjct: 69 FTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMT 128
Query: 156 IKEVDEDGSGELEFNEFCTLAAKFLEEE 183
KE +G G+ ++ +F + EEE
Sbjct: 129 FKEAPVEG-GKFDYVKFTAMIKGSGEEE 155
Score = 61.8 bits (151), Expect = 1e-12
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF D ++ G + + + I E LG + L ++KE G L F F ++ +
Sbjct: 23 AFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP----GPLNFTMFLSIFSD 78
Query: 179 FLEEEEENPEAMRAELREAFMLYDRE 204
L + +R AF ++D +
Sbjct: 79 KLSGTDS-----EETIRNAFAMFDEQ 99
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 86.8 bits (216), Expect = 4e-22
Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 2 VGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELR 61
+G ++ G Q I E++ E++ +F + + + E
Sbjct: 27 IGDLLRACG----QNPTLAEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPE---EFV 79
Query: 62 EAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+ F ++D++ G I LR +++ L L EE++E+++ + G +++
Sbjct: 80 KGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYH 131
Score = 72.5 bits (179), Expect = 1e-16
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 24/134 (17%)
Query: 58 AELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDV-- 115
+ ++AF L+DR G G I + +++ N I EI+S +D +
Sbjct: 5 SPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPT----LAEITEIESTLPAEVDMEQFL 60
Query: 116 -----------------LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKE 158
+ F+ FD++ G I + ++ LG S E ++E++K
Sbjct: 61 QVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKG 120
Query: 159 VDEDGSGELEFNEF 172
V G + +++F
Sbjct: 121 VPVK-DGMVNYHDF 133
Score = 65.6 bits (161), Expect = 5e-14
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF FD+ G IP +G ++ G Q I E++ E++ +F + +
Sbjct: 10 AFSLFDRHGTGRIPKTSIGDLLRACG----QNPTLAEITEIESTLPAEVDMEQFLQVLNR 65
Query: 179 FLEEEEENPEAMRAELREAFMLYDREE 205
+ E + F ++D++
Sbjct: 66 PNGFDMPGDP---EEFVKGFQVFDKDA 89
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 88.1 bits (219), Expect = 5e-22
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
+ LG +++ L+ ++ E G + F F T+ + +E +
Sbjct: 80 RATFDSLGRLCTEQELDSMVAE----APGPINFTMFLTIFGDRIAGTDE-----EDVIVN 130
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
AF L+D EG+G + L+ ++ +E+++ + E DG+G ID
Sbjct: 131 AFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIK 181
Score = 85.1 bits (211), Expect = 7e-21
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
+ E +EAF L D++ +G+I+ + +R L +EL+ M+ E G I+F
Sbjct: 53 QHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAE----APGPINF 108
Query: 114 -----------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEII 156
DV+ AF FD E G + + + G SQ+ +++ +
Sbjct: 109 TMFLTIFGDRIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQAL 167
Query: 157 KEVDEDGSGELEFNEFCTLAAKFLEEE 183
E DG+G ++ +F + K +EE
Sbjct: 168 SEAPIDGNGLIDIKKFAQILTKGAKEE 194
Score = 61.2 bits (149), Expect = 6e-12
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF+ DQ+K G I + + + LG +++ L+ ++ E G + F F T+
Sbjct: 62 AFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAE----APGPINFTMFLTIFGD 117
Query: 179 FLEEEEENPEAMRAELREAFMLYD 202
+ +E + AF L+D
Sbjct: 118 RIAGTDE-----EDVIVNAFNLFD 136
Score = 37.7 bits (88), Expect = 0.001
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE 49
+ G SQ+ +++ + E DG+G ++ +F + K +EE
Sbjct: 150 SLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQILTKGAKEE 194
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 87.9 bits (218), Expect = 8e-22
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 20/148 (13%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRA-- 58
+ I + +P II+ DGS ++F F + A F E+E+ E
Sbjct: 50 DLQQIGALAVNPLGDR----IIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKK 105
Query: 59 ---------ELREAFMLYDREGNGYITTDVLREIISEL-DPNLDYEELN----EMIEEID 104
+L AF LYD + +G I+ + +++ + + E+L ++E D
Sbjct: 106 PEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEAD 165
Query: 105 SDGSGTIDFDVLTRAFEAFDQEKKGSIP 132
DG G + F T++ E D E+K SI
Sbjct: 166 EDGDGAVSFVEFTKSLEKMDVEQKMSIR 193
Score = 63.6 bits (155), Expect = 9e-13
Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 23/114 (20%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
L F A D+ KKG + + I + +P II+ DGS ++F F +
Sbjct: 31 LHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDR----IIESFFPDGSQRVDFPGFVRV 86
Query: 176 AAKFLEEEEENPEAMRA-----------ELREAFMLYD--------REEFMSIM 210
A F E+E+ E +L AF LYD R E + ++
Sbjct: 87 LAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVL 140
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 85.0 bits (211), Expect = 3e-21
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
++ E+ +P Q +I D DG+GE++F EF ++F + ++ +LR
Sbjct: 29 MSLPELQQNPLVQR----VIDIFDTDGNGEVDFKEFIEGVSQFSVKGDK-----EQKLRF 79
Query: 63 AFMLYDREGNGYITTDVLREIISEL-DPNLDYEELN----EMIEEIDSDGSGTIDFDVLT 117
AF +YD + +GYI+ L +++ + NL +L + I D DG G I F+
Sbjct: 80 AFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFC 139
Query: 118 RAFEAFDQEKKGSIP 132
D KK +
Sbjct: 140 AVVGGLDIHKKMVVD 154
Score = 76.9 bits (190), Expect = 4e-18
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 26/143 (18%)
Query: 58 AELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF---- 113
L + F D + +G ++ + + EL N + +I+ D+DG+G +DF
Sbjct: 6 KRLGKRFKKLDLDNSGSLSVEEFMSL-PELQQN---PLVQRVIDIFDTDGNGEVDFKEFI 61
Query: 114 -------------DVLTRAFEAFDQEKKGSIPTD-----MVGTIMEMLGHPQSQEALNEI 155
L AF +D +K G I + + L Q Q+ +++
Sbjct: 62 EGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKT 121
Query: 156 IKEVDEDGSGELEFNEFCTLAAK 178
I D+DG G + F EFC +
Sbjct: 122 IINADKDGDGRISFEEFCAVVGG 144
Score = 63.4 bits (155), Expect = 4e-13
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
L + F+ D + GS+ + ++ E+ +P Q +I D DG+GE++F EF
Sbjct: 8 LGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQR----VIDIFDTDGNGEVDFKEFIEG 63
Query: 176 AAKFLEEEEENPEAMRAELREAFMLYDR 203
++F + ++ +LR AF +YD
Sbjct: 64 VSQFSVKGDK-----EQKLRFAFRIYDM 86
Score = 34.9 bits (81), Expect = 0.006
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ + L Q Q+ +++ I D+DG G + F EFC +
Sbjct: 101 LKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGG 144
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 83.7 bits (208), Expect = 8e-21
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
+ LG + LN ++KE G+L F F TL + + + LR
Sbjct: 39 KDMFSSLGRVPPDDELNAMLKECP----GQLNFTAFLTLFGEKVSGTDP-----EDALRN 89
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
AF ++D +G G+I D L++++ + N EE+ + ++ + +++
Sbjct: 90 AFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYN 140
Score = 79.5 bits (197), Expect = 3e-19
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
+ EL+EAF + D++ +G+I + L+++ S L +ELN M++E G ++F
Sbjct: 12 QRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP----GQLNF 67
Query: 114 -----------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEII 156
D L AF FD++ +G IP D + ++E +G S+E + +
Sbjct: 68 TAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVW 127
Query: 157 KEVDEDGSGELEFNEFCTLAAKFLEEE 183
K+ + + +N+ + K +E+
Sbjct: 128 KDAPLK-NKQFNYNKMVDIKGKAEDED 153
Score = 60.6 bits (148), Expect = 4e-12
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF DQ++ G I + + + LG + LN ++KE G+L F F TL +
Sbjct: 21 AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP----GQLNFTAFLTLFGE 76
Query: 179 FLEEEEENPEAMRAELREAFMLYDRE 204
+ + LR AF ++D +
Sbjct: 77 KVSGTDP-----EDALRNAFSMFDED 97
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 83.2 bits (206), Expect = 9e-21
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 18 LNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITT 77
++ E E ++ + + A+ ++ EE +EL + F L IT
Sbjct: 5 EKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEF-----VSELCKGFSLLADPERHLITA 59
Query: 78 DVLREIISEL-DPNLDYEELNEMIEEIDSDGSGTIDFD 114
+ LR L + E+ M+ E D DG G ++
Sbjct: 60 ESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQT 97
Score = 64.7 bits (158), Expect = 1e-13
Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 21/135 (15%)
Query: 94 EELNEMIEEIDSDGSGTIDFD-----------------VLTRAFEAFDQEKKGSIPTDMV 136
M+ E S ++ L + F ++ I + +
Sbjct: 3 PTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESL 62
Query: 137 GTIMEMLGHPQ-SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELR 195
+LG S+E +++E D DG G L EFC L + E E+ E L
Sbjct: 63 RRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAE---TWLE 119
Query: 196 EAFMLYDREEFMSIM 210
+A +S M
Sbjct: 120 KALTQELCNHNLSSM 134
Score = 36.9 bits (86), Expect = 0.001
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 5 IMEMLGHPQ-SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREA 63
+LG S+E +++E D DG G L EFC L + E E+ E L +A
Sbjct: 65 NSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAE---TWLEKA 121
Query: 64 FMLYDREGN 72
N
Sbjct: 122 LTQELCNHN 130
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 84.7 bits (210), Expect = 1e-20
Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 24/140 (17%)
Query: 58 AELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD--- 114
L F DR+G+ + D R+ +++L LD E + + D +GSGT+D +
Sbjct: 37 QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFL 96
Query: 115 -------------VLTRAFEAFDQEKKGSIPTD-------MVGTIMEMLGHPQSQEALNE 154
V+ AF D+ G + D G E L
Sbjct: 97 RALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRR 156
Query: 155 IIKEVDE-DGSGELEFNEFC 173
+ D + G++ EF
Sbjct: 157 FLDNFDSSEKDGQVTLAEFQ 176
Score = 76.6 bits (189), Expect = 1e-17
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 14/120 (11%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
+ LG Q + ++ D +GSG L+ EF + + E +
Sbjct: 60 RQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREA------VIAA 113
Query: 63 AFMLYDREGNGYITTDVLREIIS-------ELDPNLDYEELNEMIEEIDS-DGSGTIDFD 114
AF DR G+G +T D LR + S + E L ++ DS + G +
Sbjct: 114 AFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLA 173
Score = 60.1 bits (146), Expect = 2e-11
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
L R F D++ S+ D + LG Q + ++ D +GSG L+ EF
Sbjct: 39 LARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRA 98
Query: 176 AAKFLEEEEENPEAMRAELREAFMLYDR 203
+ + E + AF DR
Sbjct: 99 LRPPMSQAREA------VIAAAFAKLDR 120
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 84.3 bits (209), Expect = 1e-20
Identities = 20/116 (17%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
T++ +G + +N I++ +D + G + + EF ++ E L+
Sbjct: 62 YTVLASVGIKKWD--INRILQALDINDRGNITYTEFMAGCYRWKNIEST-------FLKA 112
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTR 118
AF D++ +GYI+ + ++ + LD +++ + S G ++ +
Sbjct: 113 AFNKIDKDEDGYISKSDIVSLVHDK--VLDNNDIDNFFLSVHSIKKGIPREHIINK 166
Score = 78.1 bits (193), Expect = 2e-18
Identities = 21/163 (12%), Positives = 50/163 (30%), Gaps = 27/163 (16%)
Query: 36 NEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEE 95
+ + + E + E F D NG ++ + +++ + + +
Sbjct: 17 SNIRNIIINIMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVG--IKKWD 74
Query: 96 LNEMIEEIDSDGSGTIDF---------------DVLTRAFEAFDQEKKGSIPTDMVGTIM 140
+N +++ +D + G I + L AF D+++ G I + +++
Sbjct: 75 INRILQALDINDRGNITYTEFMAGCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLV 134
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELE--------FNEFCTL 175
++ V G F EF
Sbjct: 135 H--DKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDY 175
Score = 62.3 bits (152), Expect = 2e-12
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+ F D GS+ + T++ +G + +N I++ +D + G + + EF
Sbjct: 41 INELFYKLDTNHNGSLSHREIYTVLASVGIKKWD--INRILQALDINDRGNITYTEFMAG 98
Query: 176 AAKFLEEEEENPEAMRAELREAFMLYDR 203
++ E L+ AF D+
Sbjct: 99 CYRWKNIEST-------FLKAAFNKIDK 119
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 83.6 bits (207), Expect = 1e-20
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Query: 18 LNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE-EENPEAMRAELREAFMLYDREGNGYIT 76
+ D DG + EF T A K L ++ + E R L A + D +G+G +T
Sbjct: 57 WQGLAGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVT 116
Query: 77 TDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAF 123
++ + + + +D+DG G + + AF +
Sbjct: 117 VADTARALTAF--GVPEDLARQAAAALDTDGDGKVGETEIVPAFARY 161
Score = 69.0 bits (169), Expect = 5e-15
Identities = 21/159 (13%), Positives = 41/159 (25%), Gaps = 40/159 (25%)
Query: 59 ELREAFMLYDREGNGYITTDVLREIISELDPNLDYE---------------ELNEMIEEI 103
+ F +D++GNG+I + +
Sbjct: 5 RIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIA 64
Query: 104 DSDGSGTIDFD-----------------------VLTRAFEAFDQEKKGSIPTDMVGTIM 140
D DG I + L A D + G++ +
Sbjct: 65 DRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARAL 124
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKF 179
G ++ + +D DG G++ E A++
Sbjct: 125 TAFGV--PEDLARQAAAALDTDGDGKVGETEIVPAFARY 161
Score = 60.1 bits (146), Expect = 1e-11
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 94 EELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALN 153
+ D DG+G ID + A +A E + +D + +
Sbjct: 4 RRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGA-----EALWQ 58
Query: 154 EIIKEVDEDGSGELEFNEFCTLAAKFLEEE-EENPEAMRAELREAFMLYDR 203
+ D DG + EF T A K L ++ + E R L A + D
Sbjct: 59 GLAGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADT 109
Score = 31.6 bits (72), Expect = 0.090
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 4 TIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKF 45
+ G ++ + +D DG G++ E A++
Sbjct: 122 RALTAFGV--PEDLARQAAAALDTDGDGKVGETEIVPAFARY 161
Score = 26.2 bits (58), Expect = 7.0
Identities = 10/63 (15%), Positives = 21/63 (33%)
Query: 148 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREEFM 207
+ + D+DG+G ++ ++F A L E + R + +
Sbjct: 2 YERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLA 61
Query: 208 SIM 210
I
Sbjct: 62 GIA 64
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 83.3 bits (206), Expect = 2e-20
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 15/136 (11%)
Query: 1 MVGTIMEMLGHPQSQEALNEI-----------IKEVDEDGSGELEFNEFCTLAAKFLEE- 48
I E G + + KE G L +F + + E
Sbjct: 32 EAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQ 91
Query: 49 -EEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDG 107
E + ++ + D+ +G I D ++ L + E E ++D++G
Sbjct: 92 GEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTAL--GMSKAEAAEAFNQVDTNG 149
Query: 108 SGTIDFDVLTRAFEAF 123
+G + D L A F
Sbjct: 150 NGELSLDELLTAVRDF 165
Score = 69.4 bits (170), Expect = 4e-15
Identities = 28/171 (16%), Positives = 50/171 (29%), Gaps = 41/171 (23%)
Query: 54 EAMRAELREAFMLYDREGNGYITTD----VLREIISELDPNLDYEELNE----------- 98
L++ F +D +GNG + + I + E+
Sbjct: 3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDY 62
Query: 99 MIEEIDSDGSGTIDFD------------------------VLTRAFEAFDQEKKGSIPTD 134
+ +E G++ + V+ D+ G I D
Sbjct: 63 LAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINAD 122
Query: 135 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEE 185
+ LG S+ E +VD +G+GEL +E T F +
Sbjct: 123 EFAAWLTALGM--SKAEAAEAFNQVDTNGNGELSLDELLTAVRDFHFGRLD 171
Score = 33.2 bits (76), Expect = 0.032
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 4 TIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEE 51
+ LG S+ E +VD +G+GEL +E T F +
Sbjct: 126 AWLTALGM--SKAEAAEAFNQVDTNGNGELSLDELLTAVRDFHFGRLD 171
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 83.3 bits (206), Expect = 3e-20
Identities = 14/112 (12%), Positives = 39/112 (34%), Gaps = 1/112 (0%)
Query: 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFL-EEEEENPEAMRAELREAFMLYDREG 71
++++ + ++ + E A L + + E + + D +
Sbjct: 56 ETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDK 115
Query: 72 NGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAF 123
+GY++ + + + P+L ++ +D + +G I D F
Sbjct: 116 DGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDF 167
Score = 81.3 bits (201), Expect = 2e-19
Identities = 21/172 (12%), Positives = 50/172 (29%), Gaps = 32/172 (18%)
Query: 47 EEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISEL---------DPNLDYEELN 97
E E +++ D G+G+I+ + I + +E
Sbjct: 3 EITESERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFL 62
Query: 98 EMIEEIDSDGSGTIDFD-----------------------VLTRAFEAFDQEKKGSIPTD 134
+ +++ I + ++ D +K G +
Sbjct: 63 RVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLP 122
Query: 135 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEEN 186
++ +G + + +D + +G++ +EF FL EE
Sbjct: 123 EFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFLFGLEET 174
Score = 48.6 bits (116), Expect = 2e-07
Identities = 10/111 (9%), Positives = 30/111 (27%), Gaps = 12/111 (10%)
Query: 94 EELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALN 153
++ ++ +D G G I + + K + ++++
Sbjct: 14 RKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAK-----------LSAEKAEETRQEFL 62
Query: 154 EIIKEVDEDGSGELEFNEFCTLAAKFL-EEEEENPEAMRAELREAFMLYDR 203
+ ++ + E A L + + E + + D
Sbjct: 63 RVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDT 113
Score = 41.3 bits (97), Expect = 7e-05
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 4 TIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEEN 52
++ +G + + +D + +G++ +EF FL EE
Sbjct: 126 AFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFLFGLEET 174
Score = 28.6 bits (64), Expect = 1.2
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 6/88 (6%)
Query: 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGN 72
+ + +D D G + EF + + + F D N
Sbjct: 99 MAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTD------DKAITCFNTLDFNKN 152
Query: 73 GYITTDVLREIISELDPNLDYEELNEMI 100
G I+ D +++ L+ L
Sbjct: 153 GQISRDEFLVTVNDFLFGLEETALANAF 180
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 83.7 bits (207), Expect = 3e-20
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 16/135 (11%)
Query: 3 GTIMEMLGHP---------QSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEE-- 51
+ + + ++A+ + L ++ F E E E
Sbjct: 59 LYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERE 118
Query: 52 ---NPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGS 108
P + + + D +G+G + D L+ ++ D + E E+ D+D S
Sbjct: 119 RRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFD--VPQEAAYTFFEKADTDKS 176
Query: 109 GTIDFDVLTRAFEAF 123
G ++ L F F
Sbjct: 177 GKLERTELVHLFRKF 191
Score = 78.7 bits (194), Expect = 2e-18
Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 38/172 (22%)
Query: 50 EENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLD---------YEELNEMI 100
E+ M + L + F +D + +G + D + + ++ + +
Sbjct: 28 EDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFF 87
Query: 101 EEIDSDGSGTIDFD---------------------------VLTRAFEAFDQEKKGSIPT 133
+ + + + ++ D + G++
Sbjct: 88 LHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDV 147
Query: 134 DMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEE 185
D + T+M+ PQ EA ++ D D SG+LE E L KF E +
Sbjct: 148 DELKTMMKAFDVPQ--EAAYTFFEKADTDKSGKLERTELVHLFRKFWMEPYD 197
Score = 57.1 bits (138), Expect = 2e-10
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 14/102 (13%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHP---------QSQEALNEIIKEVDEDGSGE 166
L + F+ FD + G + D V + + + ++A+ +
Sbjct: 38 LYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNG 97
Query: 167 LEFNEFCTLAAKFLEEEEE-----NPEAMRAELREAFMLYDR 203
L ++ F E E E P + + + D
Sbjct: 98 LLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDD 139
Score = 37.5 bits (87), Expect = 0.001
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 4 TIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEE 51
T+M+ PQ EA ++ D D SG+LE E L KF E +
Sbjct: 152 TMMKAFDVPQ--EAAYTFFEKADTDKSGKLERTELVHLFRKFWMEPYD 197
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 79.2 bits (196), Expect = 1e-19
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 32 ELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNL 91
E + + + E E+REAF + D++GNGYI+ LR +++ L L
Sbjct: 9 HGSSGENLYFQSLMKDTDSE------EEIREAFRVEDKDGNGYISAAELRHVMTNLGEKL 62
Query: 92 DYEELNEMIEEIDSDGSGTIDFD 114
EE++EMI E D DG G ++++
Sbjct: 63 TDEEVDEMIREADIDGDGQVNYE 85
Score = 52.3 bits (126), Expect = 1e-09
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+ AF D++ G I + +M LG + E ++E+I+E D DG G++ + EF +
Sbjct: 31 IREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 90
Score = 37.3 bits (87), Expect = 4e-04
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+M LG + E ++E+I+E D DG G++ + EF +
Sbjct: 54 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 90
Score = 27.6 bits (62), Expect = 1.1
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 166 ELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDRE 204
E + + + E E+REAF + D++
Sbjct: 9 HGSSGENLYFQSLMKDTDSE------EEIREAFRVEDKD 41
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 85.1 bits (211), Expect = 1e-19
Identities = 47/222 (21%), Positives = 82/222 (36%), Gaps = 47/222 (21%)
Query: 4 TIMEMLGHP--QSQEALNEIIKEVDEDGSGELEFNEFC----------TLAAKFLEEEEE 51
T + L HP Q + I ++ S +F A L +E
Sbjct: 270 TATQCLEHPWIQKYSSETPTISDLPSLESAMTNIRQFQAEKKLAQAALLYMASKLTTLDE 329
Query: 52 NPEAMRAELREAFMLYDREGNGYITTDVLREIISEL--------------DPNLDYEELN 97
+L E F D +G + D L E + + ++++
Sbjct: 330 T-----KQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQID 384
Query: 98 EMIEEIDSDGSGTIDF----------------DVLTRAFEAFDQEKKGSIPTDMVGTIME 141
++ +D DGSG+I++ + + RAF+ FD++ G I T + +
Sbjct: 385 SLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFS 444
Query: 142 MLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE 183
E L II++VD + GE++FNEF + F+ E
Sbjct: 445 QADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNFVRNE 486
Score = 26.6 bits (59), Expect = 8.1
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 16/92 (17%)
Query: 139 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMR------- 191
+ L + L EI +++D + G L+ +E +F+ + + ++
Sbjct: 320 MASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTI 379
Query: 192 -AELREAFMLYDR--------EEFMSIMIDVN 214
++ L D EF++ ID
Sbjct: 380 EDQIDSLMPLLDMDGSGSIEYSEFIASAIDRT 411
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 79.2 bits (196), Expect = 2e-19
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG 73
+ + + + V +GS +F L + +++ F D + +G
Sbjct: 8 KADDIKKALDAVKAEGS--FNHKKFFALVGLKAMSAND--------VKKVFKAIDADASG 57
Query: 74 YITTDVLREIISELDP---NLDYEELNEMIEEIDSDGSGTIDFD 114
+I + L+ ++ +L E ++ D DG G I D
Sbjct: 58 FIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGID 101
Score = 36.0 bits (84), Expect = 0.002
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 10/56 (17%)
Query: 148 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDR 203
+ + + + V +GS +F L ++++ F D
Sbjct: 8 KADDIKKALDAVKAEGS--FNHKKFFALVGLKAMSAN--------DVKKVFKAIDA 53
Score = 34.1 bits (79), Expect = 0.008
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
G + +K D+DG G++ +EF TL
Sbjct: 71 FAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETL 106
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 77.9 bits (193), Expect = 3e-19
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 28 DGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISEL 87
SG ++ ++ A+ L EEE L+E F + D + +G IT D L++ + +
Sbjct: 1 HSSGHIDDDDK--HMAERLSEEE------IGGLKELFKMIDTDNSGTITFDELKDGLKRV 52
Query: 88 DPNLDYEELNEMIEEIDSDGSGTIDFD 114
L E+ ++++ D D SGTID+
Sbjct: 53 GSELMESEIKDLMDAADIDKSGTIDYG 79
Score = 61.8 bits (151), Expect = 4e-13
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 106 DGSGTIDFD--------------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEA 151
SG ID D L F+ D + G+I D + ++ +G +
Sbjct: 1 HSSGHIDDDDKHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESE 60
Query: 152 LNEIIKEVDEDGSGELEFNEFCTL 175
+ +++ D D SG +++ EF
Sbjct: 61 IKDLMDAADIDKSGTIDYGEFIAA 84
Score = 41.4 bits (98), Expect = 1e-05
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
++ +G + + +++ D D SG +++ EF
Sbjct: 46 KDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 84
Score = 29.0 bits (66), Expect = 0.32
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 162 DGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDRE 204
SG ++ ++ A+ L EEE L+E F + D +
Sbjct: 1 HSSGHIDDDDK--HMAERLSEEE------IGGLKELFKMIDTD 35
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 81.4 bits (201), Expect = 3e-19
Identities = 19/144 (13%), Positives = 45/144 (31%), Gaps = 20/144 (13%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
G S + +++ D D +G + F EF + KF+E
Sbjct: 74 MMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAM-YKFME-----------LAYN 121
Query: 63 AFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD-------V 115
F++ R +G + + + +L ++ + + ++ + + G D +
Sbjct: 122 LFVMNARARSGTLEPHEILPALQQLGFYIN-QRTSLLLHRLFARGMAFCDLNCWIAICAF 180
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTI 139
+ A+ M
Sbjct: 181 AAQTRSAYQMIFMNPYYGPMKPFN 204
Score = 81.0 bits (200), Expect = 4e-19
Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 14/175 (8%)
Query: 50 EENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSG 109
P + + FM DR+ +G + + L L + M+ D+D +G
Sbjct: 43 NTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNG 102
Query: 110 TIDFD----------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEV 159
I F + F + + G++ + ++ LG +Q + ++ +
Sbjct: 103 HISFYEFMAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQR-TSLLLHRL 161
Query: 160 DEDGSGELEFNEF---CTLAAKFLEEEEENPEAMRAELREAFMLYDREEFMSIMI 211
G + N + C AA+ + + F + +F+ ++
Sbjct: 162 FARGMAFCDLNCWIAICAFAAQTRSAYQMIFMNPYYGPMKPFNPMEFGKFLDVVT 216
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 84.0 bits (208), Expect = 4e-19
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 34/160 (21%)
Query: 41 LAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISEL--------DPNLD 92
+ +K EE R EL + F D+ G+G + L E + L +
Sbjct: 344 IGSKLTTLEE------RKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNV 397
Query: 93 YEELNEMIEEIDSDGSGTIDF----------------DVLTRAFEAFDQEKKGSIPTDMV 136
EE++ +++E+D D +G I++ + L RAF FD +K G I +
Sbjct: 398 EEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKE-- 455
Query: 137 GTIMEMLG-HPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+ + G S++ N+++ E D++ ++F+EF ++
Sbjct: 456 -ELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSM 494
Score = 77.8 bits (192), Expect = 5e-17
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFC--TLAAKFLEEEEENPEAMRAELREA 63
E+ +E ++ I+KEVD D +G +E++EF + + L EE LR A
Sbjct: 389 NELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEE--------RLRRA 440
Query: 64 FMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
F L+D + +G IT + L + ++ + N+++ E D + IDFD
Sbjct: 441 FNLFDTDKSGKITKEELANLFGL--TSISEKTWNDVLGEADQNKDNMIDFD 489
Score = 57.0 bits (138), Expect = 6e-10
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 79 VLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGT 138
+ I S+L + +EL ++ +++D +G G +D L + K
Sbjct: 340 AILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKN---------- 389
Query: 139 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFC--TLAAKFLEEEEENPEAMRAELRE 196
E+ +E ++ I+KEVD D +G +E++EF + + L EE LR
Sbjct: 390 --ELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEE--------RLRR 439
Query: 197 AFMLYDREEFMSIMID 212
AF L+D ++ I +
Sbjct: 440 AFNLFDTDKSGKITKE 455
Score = 38.5 bits (90), Expect = 9e-04
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
S++ N+++ E D++ ++F+EF ++
Sbjct: 460 LFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSM 494
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 83.2 bits (206), Expect = 7e-19
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 33/161 (20%)
Query: 40 TLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLRE--------IISELDPNL 91
A L +EE EL + F D+ G+G + L + ++ D
Sbjct: 333 LYMASKLTSQEE-----TKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQ 387
Query: 92 DYEELNEMIEEIDSDGSGTIDF----------------DVLTRAFEAFDQEKKGSIPTDM 135
E++ ++ D D +G ID+ D L AF+ FDQ+ G I
Sbjct: 388 IESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKI---S 444
Query: 136 VGTIMEMLG-HPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
V + + G + E+I +D + G+++F EFC +
Sbjct: 445 VDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKM 485
Score = 77.0 bits (190), Expect = 9e-17
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFC--TLAAKFLEEEEENPEAMRAEL 60
G + + PQ + ++ I+ D D +G ++++EF + K L ++ +L
Sbjct: 377 GEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKD--------KL 428
Query: 61 REAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
AF +D++GNG I+ D L + +L+ + EMI IDS+ G +DF+
Sbjct: 429 ESAFQKFDQDGNGKISVDELASVFGL--DHLESKTWKEMISGIDSNNDGDVDFE 480
Score = 38.5 bits (90), Expect = 0.001
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+ E+I +D + G+++F EFC +
Sbjct: 451 VFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKM 485
Score = 27.0 bits (60), Expect = 6.2
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 139 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT--LAAKFLEEEEENPEAMRAELRE 196
+ L + + L +I + +D++G G+L+ E E + + +E+
Sbjct: 335 MASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDA 394
Query: 197 AFMLYDR--------EEFMSIMIDVN 214
D EF+++ +D
Sbjct: 395 ILGAADFDRNGYIDYSEFVTVAMDRK 420
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 76.0 bits (188), Expect = 9e-19
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
A +L+ AF +D++G+G+IT D LR ++ L L EEL+ MI E D D G +++
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
Query: 114 D 114
+
Sbjct: 62 E 62
Score = 55.6 bits (135), Expect = 5e-11
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
L AF AFDQ+ G I D + M LG P QE L+ +I+E D D G + + EF +
Sbjct: 8 LQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARM 67
Query: 176 AAK 178
A+
Sbjct: 68 LAQ 70
Score = 40.9 bits (97), Expect = 1e-05
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
M LG P QE L+ +I+E D D G + + EF + A+
Sbjct: 31 AMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARMLAQ 70
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 76.5 bits (189), Expect = 1e-18
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 40 TLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEM 99
++ + E E M AE + AF ++D +G G I+T L ++ L N EEL+ +
Sbjct: 2 SMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAI 61
Query: 100 IEEIDSDGSGTIDFD 114
IEE+D DGSGTIDF+
Sbjct: 62 IEEVDEDGSGTIDFE 76
Score = 67.2 bits (165), Expect = 4e-15
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF+ FD + G I T +GT+M MLG ++E L+ II+EVDEDGSG ++F EF + +
Sbjct: 25 AFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVR 84
Query: 179 FLEEE 183
++E+
Sbjct: 85 QMKED 89
Score = 51.5 bits (124), Expect = 3e-09
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE 49
GT+M MLG ++E L+ II+EVDEDGSG ++F EF + + ++E+
Sbjct: 43 GTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKED 89
Score = 25.3 bits (56), Expect = 6.3
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 174 TLAAKFLEEEEENPEAMRAELREAFMLYDRE 204
++ + E E M AE + AF ++D +
Sbjct: 2 SMTDQQAEARAFLSEEMIAEFKAAFDMFDAD 32
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 82.4 bits (204), Expect = 1e-18
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 37/163 (22%)
Query: 41 LAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLRE-----------IISELDP 89
+ +K ++E EL F D+ G+G + L E S LD
Sbjct: 324 MGSKLTSQDE------TKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDA 377
Query: 90 NLDYEELNEMIEEIDSDGSGTIDF----------------DVLTRAFEAFDQEKKGSIPT 133
+ E++++++ +D D +G I++ + L RAF FD + G I +
Sbjct: 378 SAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISS 437
Query: 134 DMVGTIMEMLG-HPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+ + G E ++ EVD++ GE++F+EF +
Sbjct: 438 T---ELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQM 477
Score = 76.7 bits (189), Expect = 1e-16
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFC--TLAAKFLEEEEENPEAMRAEL 60
G ML + +++++ VD D +G +E++EF + K L E L
Sbjct: 369 GQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRE--------RL 420
Query: 61 REAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
AF ++D + +G I++ L I ++D E ++ E+D + G +DFD
Sbjct: 421 ERAFRMFDSDNSGKISSTELATIFGV--SDVDSETWKSVLSEVDKNNDGEVDFD 472
Score = 58.9 bits (143), Expect = 1e-10
Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 19/136 (13%)
Query: 79 VLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGT 138
L + S+L + +EL + ++D +G G +D L ++ + K G
Sbjct: 320 ALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMK---------GQ 370
Query: 139 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFC--TLAAKFLEEEEENPEAMRAELRE 196
ML + +++++ VD D +G +E++EF + K L E L
Sbjct: 371 DASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRE--------RLER 422
Query: 197 AFMLYDREEFMSIMID 212
AF ++D + I
Sbjct: 423 AFRMFDSDNSGKISST 438
Score = 38.9 bits (91), Expect = 7e-04
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
E ++ EVD++ GE++F+EF +
Sbjct: 443 IFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQM 477
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 77.6 bits (191), Expect = 4e-18
Identities = 15/112 (13%), Positives = 41/112 (36%), Gaps = 5/112 (4%)
Query: 15 QEALNEIIKEVDEDGSGELEFNEFCTLAAKFL---EEEEENPEAMRAELREAFMLYDREG 71
+ + + K DE+ ++ E+ + A+ + E+ E PE + + F + D G
Sbjct: 63 KLIWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSG 122
Query: 72 NGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAF 123
+ I + + + + + + G + ++ R + +
Sbjct: 123 DNIIDKHEYSTVYMSY--GIPKSDCDAAFDTLSDGGKTMVTREIFARLWTEY 172
Score = 60.2 bits (146), Expect = 1e-11
Identities = 17/171 (9%), Positives = 40/171 (23%), Gaps = 43/171 (25%)
Query: 57 RAELREAF-MLYDREGNGYITTDVLREIISELDPNLDYEE---------------LNEMI 100
R ++ F YD +G I D I ++ + + +
Sbjct: 11 RNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLR 70
Query: 101 EEIDSDGSGTIDFD-------------------------VLTRAFEAFDQEKKGSIPTDM 135
+ D + + + + F+ D I
Sbjct: 71 KYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHE 130
Query: 136 VGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEEN 186
T+ G + + + + G + F L ++ +
Sbjct: 131 YSTVYMSYGI--PKSDCDAAFDTLSDGGKTMVTREIFARLWTEYFVSNDRG 179
Score = 51.8 bits (124), Expect = 1e-08
Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 103 IDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDED 162
D + G I++D A + L + + + K DE+
Sbjct: 22 YDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATL-----KLIWDGLRKYADEN 76
Query: 163 GSGELEFNEFCTLAAKFL---EEEEENPEAMRAELREAFMLYD--------REEFMSIM 210
++ E+ + A+ + E+ E PE + + F + D + E+ ++
Sbjct: 77 EDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVY 135
Score = 31.0 bits (70), Expect = 0.18
Identities = 5/49 (10%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 4 TIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEEN 52
T+ G + + + + G + F L ++ +
Sbjct: 133 TVYMSYGI--PKSDCDAAFDTLSDGGKTMVTREIFARLWTEYFVSNDRG 179
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 77.1 bits (190), Expect = 8e-18
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 24/128 (18%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG 73
+ E ++ +D D SG + FNEF L A R+ F+ +D + +G
Sbjct: 71 NLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG------------WRQHFISFDTDRSG 118
Query: 74 YITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD----------VLTRAFEAF 123
+ L++ ++ + L + +N + + ++ G I FD LT +F
Sbjct: 119 TVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN--GKITFDDYIACCVKLRALTDSFRRR 176
Query: 124 DQEKKGSI 131
D ++G +
Sbjct: 177 DTAQQGVV 184
Score = 69.0 bits (169), Expect = 8e-15
Identities = 33/184 (17%), Positives = 68/184 (36%), Gaps = 40/184 (21%)
Query: 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELN-----EMIEEIDSDG 107
P + L F +G I D L+ +++ Y+ N M+ +D D
Sbjct: 28 PGQTQDPLYGYFAA-VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 86
Query: 108 SGTIDFD----------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIK 157
SGT+ F+ + F +FD ++ G++ + + +G S +A+N I K
Sbjct: 87 SGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 146
Query: 158 EVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDR----------EEFM 207
+ G++ F+++ K L ++F D ++F+
Sbjct: 147 RYSTN--GKITFDDYIACCVKL------------RALTDSFRRRDTAQQGVVNFPYDDFI 192
Query: 208 SIMI 211
++
Sbjct: 193 QCVM 196
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 74.6 bits (184), Expect = 2e-17
Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 11/113 (9%)
Query: 2 VGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELR 61
LG S +I + L + ++ + + +++ EL
Sbjct: 37 ASYNARKLGLAPSSIDEKKIKELYG----DNLTYEQYLEYLSICVHDKDN-----VEELI 87
Query: 62 EAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+ F +D GY+T ++ I++ L +E + + S+ ID+
Sbjct: 88 KMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSSE--DNIDYK 138
Score = 71.5 bits (176), Expect = 3e-16
Identities = 16/139 (11%), Positives = 38/139 (27%), Gaps = 23/139 (16%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
E E ++ G I+ D +L + ++ E + +
Sbjct: 11 EEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG----DNLTY 66
Query: 114 D-----------------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEII 156
+ L + F FD G + + I+ G + + + +
Sbjct: 67 EQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDAL 126
Query: 157 KEVDEDGSGELEFNEFCTL 175
+ +++ FC
Sbjct: 127 NAFSSE--DNIDYKLFCED 143
Score = 52.6 bits (127), Expect = 3e-09
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 9/86 (10%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
++ G I D LG S +I + L + ++ +
Sbjct: 20 RIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG----DNLTYEQYLEYLSI 75
Query: 179 FLEEEEENPEAMRAELREAFMLYDRE 204
+ +++ EL + F +D
Sbjct: 76 CVHDKDN-----VEELIKMFAHFDNN 96
Score = 27.2 bits (61), Expect = 2.4
Identities = 4/37 (10%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
I+ G + + + + + +++ FC
Sbjct: 109 ILTTWGDALTDQEAIDALNAFSSED--NIDYKLFCED 143
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 75.1 bits (185), Expect = 2e-17
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 24/128 (18%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG 73
S E +I +D D +G++ FN F L A +E FM D++G+G
Sbjct: 38 SLETCRIMIAMLDRDHTGKMGFNAFKELWAAL------------NAWKENFMTVDQDGSG 85
Query: 74 YITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD----------VLTRAFEAF 123
+ LR+ I + L + L +++ + G I FD LT F
Sbjct: 86 TVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKN--GRIFFDDYVACCVKLRALTDFFRKR 143
Query: 124 DQEKKGSI 131
D ++GS
Sbjct: 144 DHLQQGSA 151
Score = 66.6 bits (163), Expect = 4e-14
Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 40/177 (22%)
Query: 60 LREAFMLYDREGNGYITTDVLREIISELDPNLDYEELN-----EMIEEIDSDGSGTIDFD 114
+ F +G + + L+ +++ N Y + MI +D D +G + F+
Sbjct: 2 VYTYFSA-VAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFN 60
Query: 115 ----------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGS 164
F DQ+ G++ + + ++G+ S + L I+K ++
Sbjct: 61 AFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKN-- 118
Query: 165 GELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDR----------EEFMSIMI 211
G + F+++ K L L + F D ++F+ +
Sbjct: 119 GRIFFDDYVACCVK-LR-----------ALTDFFRKRDHLQQGSANFIYDDFLQGTM 163
Score = 36.2 bits (84), Expect = 0.002
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAF 64
+ ++G+ S + L I+K ++G + F+++ K L L + F
Sbjct: 95 AIGLMGYRLSPQTLTTIVKRYSKNG--RIFFDDYVACCVK-LRA-----------LTDFF 140
Query: 65 MLYDREGNGYIT 76
D G
Sbjct: 141 RKRDHLQQGSAN 152
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 76.5 bits (188), Expect = 2e-17
Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 16/120 (13%)
Query: 5 IMEMLGHPQSQEALNEIIK---------EVDEDGSGELEFNEFCTLAAKFLEEEEENPEA 55
+E+L + + +I K + G +F EF +
Sbjct: 74 CLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFF--- 130
Query: 56 MRAELREAFMLYDREGNGYITTDVLREIISELD-PNLDYEELNEMIEEIDSDGSGTIDFD 114
EL F D GN + + + + +L+ E+ + +E+D +G+G++ FD
Sbjct: 131 ---ELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFD 187
Score = 73.4 bits (180), Expect = 3e-16
Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 28/175 (16%)
Query: 49 EEENPEAMRAELREAFMLYDREGNGYITTDVLRE-IISELDPNLDYEELNEMIE------ 101
E+ E + E F +D+ G + D + + L + + ++ +
Sbjct: 40 REKTAE-AKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKS 98
Query: 102 ---EIDSDGSGTIDF----------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEM 142
+ G+ DF LT F+ D + + +
Sbjct: 99 RTLGSKLENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPK 158
Query: 143 LGHPQ-SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 196
L E + KE+D++G+G + F+EF A+ + + +P+ + E
Sbjct: 159 LEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASAVKLDADGDPDNVPESALE 213
Score = 44.9 bits (106), Expect = 4e-06
Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 34/135 (25%)
Query: 78 DVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVG 137
+ +R+ I + E+ ++ D + +G + +D +
Sbjct: 32 ERIRQAIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSG------------------ 73
Query: 138 TIMEMLGHPQSQEALNEIIK---------EVDEDGSGELEFNEFCTLAAKFLEEEEENPE 188
+E+L + + +I K + G +F EF +
Sbjct: 74 -CLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFF-- 130
Query: 189 AMRAELREAFMLYDR 203
EL F D
Sbjct: 131 ----ELTVMFDEIDA 141
Score = 37.2 bits (86), Expect = 0.002
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
++ E + KE+D++G+G + F+EF A+ + + +P+ + E
Sbjct: 158 KLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASAVKLDADGDPDNVPESALE 213
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 72.6 bits (179), Expect = 3e-17
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 45 FLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEID 104
++ + E EL+EAF ++D++ NGYI+ LR ++ L L EE+ +MI+E D
Sbjct: 2 HMDTDAE------EELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEAD 55
Query: 105 SDGSGTIDFD 114
DG G ++++
Sbjct: 56 LDGDGQVNYE 65
Score = 61.5 bits (150), Expect = 5e-13
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
L AF+ FD+++ G I + +M LG + E + ++IKE D DG G++ + EF +
Sbjct: 11 LKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKM 70
Query: 176 AAKFLEEEEENPEAMRAELREAF 198
N + LR F
Sbjct: 71 MMTVRGGGGGNGW---SRLRRKF 90
Score = 47.2 bits (113), Expect = 9e-08
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAF 64
+M LG + E + ++IKE D DG G++ + EF + N + LR F
Sbjct: 34 VMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVRGGGGGNGW---SRLRRKF 90
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 73.0 bits (180), Expect = 3e-17
Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG 73
+ +N+ I + G+ ++ F L + + + ++E F + D++ +G
Sbjct: 7 KADDINKAISAFKDPGT--FDYKRFFHLVGLKGKTDAQ--------VKEVFEILDKDQSG 56
Query: 74 YITTDVLREIISELDP---NLDYEELNEMIEEIDSDGSGTIDFD 114
+I + L+ ++ +L+ E ++ DSD G I D
Sbjct: 57 FIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGAD 100
Score = 34.9 bits (81), Expect = 0.004
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
G + ++ D D G++ +EF +
Sbjct: 70 FSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKM 105
Score = 31.0 bits (71), Expect = 0.099
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 148 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDR 203
+ +N+ I + G+ ++ F L + + +++E F + D+
Sbjct: 7 KADDINKAISAFKDPGT--FDYKRFFHLVGLKGKTDA--------QVKEVFEILDK 52
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 72.4 bits (178), Expect = 6e-17
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 48 EEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDG 107
+E+ + +E +M +D GNG I L+ ++ +L + EL ++I E+ S
Sbjct: 22 SSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGS 81
Query: 108 SGTIDFD 114
T +
Sbjct: 82 GETFSYP 88
Score = 58.9 bits (143), Expect = 7e-12
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ FD G I + ++E LG P++ L ++I EV + +F +
Sbjct: 37 KYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLG 96
Query: 179 FLEEEEENPEAMRAELREAFM 199
A L+ M
Sbjct: 97 ----------KRSAILKMILM 107
Score = 45.8 bits (109), Expect = 4e-07
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
++E LG P++ L ++I EV + +F + A L+
Sbjct: 55 KRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLG----------KRSAILKM 104
Query: 63 AFM 65
M
Sbjct: 105 ILM 107
Score = 26.2 bits (58), Expect = 4.1
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 182 EEEENPEAMRAELREAFMLYDRE 204
+E+ + +E +M +D
Sbjct: 22 SSDEDLPSKLEGFKEKYMEFDLN 44
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 76.3 bits (187), Expect = 6e-17
Identities = 30/218 (13%), Positives = 67/218 (30%), Gaps = 49/218 (22%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEE-----EEENPEAMRAELR 61
+ + + Q+ + D G L+ E + E E P E
Sbjct: 48 DKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFM 107
Query: 62 EAFMLYDREGNGYITTDVLREIISEL--------DPNLDYEELNEMIEEIDSDGSGTIDF 113
+ + YD + +GYI+ L+ + +L PN E + M++ D + G +D
Sbjct: 108 KIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDL 167
Query: 114 D----------------------------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLG- 144
+ + F +D + G++ V ++ +
Sbjct: 168 NDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMME 227
Query: 145 -------HPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+ ++ D + G+++ +E
Sbjct: 228 LVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALC 265
Score = 64.3 bits (156), Expect = 1e-12
Identities = 23/197 (11%), Positives = 56/197 (28%), Gaps = 51/197 (25%)
Query: 58 AELREAFMLYDREGNGYITTDVLREIISELDPNLD----------YEELNEMIEEIDSDG 107
A + + +D + NGYI L + + L + + D+
Sbjct: 11 AGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATF 70
Query: 108 SGTIDFDV---------------------------LTRAFEAFDQEKKGSIP-------- 132
G + + + + +D + G I
Sbjct: 71 DGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFL 130
Query: 133 TDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL------AAKFLEEEEEN 186
D+ + + + E + ++K D++ G L+ N+ + + + +
Sbjct: 131 KDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASS 190
Query: 187 PEAMRAELREAFMLYDR 203
+ + + F YD
Sbjct: 191 QVERKRDFEKIFAHYDV 207
Score = 46.2 bits (109), Expect = 2e-06
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 15/128 (11%)
Query: 90 NLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQ 149
NLD ++ + D+D +G I+ L F ++ + + + + Q
Sbjct: 7 NLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPK----------DKITDERVQ 56
Query: 150 EALNEIIKEVDEDGSGELEFNEFCTLAAKFLEE-----EEENPEAMRAELREAFMLYDRE 204
+ + D G L+ E + E E P E + + YD +
Sbjct: 57 QIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDAD 116
Query: 205 EFMSIMID 212
I
Sbjct: 117 SSGYISAA 124
Score = 28.1 bits (62), Expect = 2.1
Identities = 4/41 (9%), Positives = 15/41 (36%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
M+ + + + ++ D + G+++ +E
Sbjct: 225 MMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALC 265
Score = 26.2 bits (57), Expect = 9.7
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLE--EEEENPEAMRA 58
++ M+ + + +I D +G LE E +E + +
Sbjct: 181 LLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDK 240
Query: 59 ELREAFMLYDREGNGYIT 76
D +G I
Sbjct: 241 FRECLLTHCDMNKDGKIQ 258
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 71.9 bits (177), Expect = 9e-17
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 9 LGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYD 68
+ + +K + S + F + ++ +++AF + D
Sbjct: 3 FSGILADADVAAALKACEAADS--FNYKAFFAKVGLTAKSADD--------IKKAFFVID 52
Query: 69 REGNGYITTDVLREIISELDP---NLDYEELNEMIEEIDSDGSGTIDFD 114
++ +G+I D L+ + L E ++ DSDG G I D
Sbjct: 53 QDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVD 101
Score = 36.8 bits (86), Expect = 7e-04
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+ +K D DG G + +E+ L
Sbjct: 71 FSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAAL 106
Score = 30.7 bits (70), Expect = 0.11
Identities = 6/61 (9%), Positives = 19/61 (31%), Gaps = 10/61 (16%)
Query: 143 LGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYD 202
+ + +K + S + F + + ++++AF + D
Sbjct: 3 FSGILADADVAAALKACEAADS--FNYKAFFAKVGLTAKSAD--------DIKKAFFVID 52
Query: 203 R 203
+
Sbjct: 53 Q 53
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 70.6 bits (174), Expect = 1e-16
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 58 AELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+ + F +D+ +G ++ D RE+ P E++ + EEID DG+G ++ D
Sbjct: 1 SSAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNAD 57
Score = 54.4 bits (132), Expect = 1e-10
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
R FE FD+ K G + D + +QE + + +E+D DG+GEL +EF +
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC 62
Query: 176 AAKFL 180
K L
Sbjct: 63 IEKML 67
Score = 41.3 bits (98), Expect = 7e-06
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFL 46
+ +QE + + +E+D DG+GEL +EF + K L
Sbjct: 24 REVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEKML 67
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 70.4 bits (173), Expect = 2e-16
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 47 EEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSD 106
E+++ + E +EAF L+D++ + +T + L ++ L N ++++E++++ D D
Sbjct: 3 EQKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKD 62
Query: 107 GSGTIDFD 114
SG D +
Sbjct: 63 NSGKFDQE 70
Score = 59.2 bits (144), Expect = 3e-12
Identities = 19/65 (29%), Positives = 40/65 (61%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF+ FD++ + + +GT+M LG +++ ++EI+K+ D+D SG+ + F T+ +
Sbjct: 19 AFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLE 78
Query: 179 FLEEE 183
+ +E
Sbjct: 79 YGQEV 83
Score = 46.1 bits (110), Expect = 2e-07
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE 49
GT+M LG +++ ++EI+K+ D+D SG+ + F T+ ++ +E
Sbjct: 37 GTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLEYGQEV 83
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 73.3 bits (180), Expect = 2e-16
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 19/145 (13%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE----------EEN 52
I E+ +P II +G ++ F F A F E E
Sbjct: 52 QRIPELAINPLGDR----IINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEP 107
Query: 53 PEAMRAELREAFMLYDREGNGYITTDVLREII-SELDPNLDYEELNE----MIEEIDSDG 107
+ +L AF LYD + + I+ D L +++ + N+ E+L I+E D DG
Sbjct: 108 LNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDG 167
Query: 108 SGTIDFDVLTRAFEAFDQEKKGSIP 132
I F + E D E+K SI
Sbjct: 168 DSAISFTEFVKVLEKVDVEQKMSIR 192
Score = 60.6 bits (147), Expect = 1e-11
Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 41/158 (25%)
Query: 58 AELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF---- 113
L F D+ NG ++ + + I EL N + +I S+G ++F
Sbjct: 29 TRLYSRFTSLDKGENGTLSREDFQRI-PELAINPLGDR---IINAFFSEGEDQVNFRGFM 84
Query: 114 ----------------------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEM--- 142
+ L AF +D +K I D + ++ M
Sbjct: 85 RTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVG 144
Query: 143 --LGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ Q + I+E D+DG + F EF + K
Sbjct: 145 VNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEK 182
Score = 53.6 bits (129), Expect = 4e-09
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 22/113 (19%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
L F + D+ + G++ + I E+ +P II +G ++ F F
Sbjct: 31 LYSRFTSLDKGENGTLSREDFQRIPELAINPLGDR----IINAFFSEGEDQVNFRGFMRT 86
Query: 176 AAKFLEEE----------EENPEAMRAELREAFMLYD--------REEFMSIM 210
A F E E + +L AF LYD R+E + ++
Sbjct: 87 LAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVL 139
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 72.0 bits (177), Expect = 3e-16
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 24/128 (18%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG 73
+ E ++ +D D SG + FNEF L A R+ F+ +D + +G
Sbjct: 40 NLETCRLMVSMLDRDMSGTMGFNEFKELWAV------------LNGWRQHFISFDSDRSG 87
Query: 74 YITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD----------VLTRAFEAF 123
+ L++ ++ + L+ + +N + + + G I FD LT +F
Sbjct: 88 TVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGK--ITFDDYIACCVKLRALTDSFRRR 145
Query: 124 DQEKKGSI 131
D ++G +
Sbjct: 146 DSAQQGMV 153
Score = 65.5 bits (160), Expect = 1e-13
Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%)
Query: 59 ELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNE-----MIEEIDSDGSGTIDF 113
L F +G I D L+ +++ Y+ N M+ +D D SGT+ F
Sbjct: 3 PLYGYFASV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGF 61
Query: 114 D----------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDG 163
+ + F +FD ++ G++ + + +G + + +N I K G
Sbjct: 62 NEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSG 121
Query: 164 SGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDR----------EEFMSIMI 211
+ F+++ K L ++F D ++F+ ++
Sbjct: 122 K--ITFDDYIACCVKL------------RALTDSFRRRDSAQQGMVNFSYDDFIQCVM 165
Score = 38.1 bits (89), Expect = 7e-04
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 14/71 (19%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFM 65
+ +G + + +N I K G + F+++ K L ++F
Sbjct: 98 LTTMGFRLNPQTVNSIAKRYSTSGK--ITFDDYIACCVKL------------RALTDSFR 143
Query: 66 LYDREGNGYIT 76
D G +
Sbjct: 144 RRDSAQQGMVN 154
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 71.7 bits (176), Expect = 5e-16
Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 23/135 (17%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFML 66
++ + ++ +D D +G+L F EF L + + +
Sbjct: 38 DLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI------------KKWQAIYKQ 85
Query: 67 YDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD----------VL 116
+D + +G I + L +L+ + +I SD G +DFD +
Sbjct: 86 FDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRR-YSDEGGNMDFDNFISCLVRLDAM 144
Query: 117 TRAFEAFDQEKKGSI 131
RAF++ D++ G I
Sbjct: 145 FRAFKSLDKDGTGQI 159
Score = 62.4 bits (152), Expect = 1e-12
Identities = 25/165 (15%), Positives = 59/165 (35%), Gaps = 32/165 (19%)
Query: 58 AELREAFMLYDREGNGYITTDVLREIISELDPN--------LDYEELNEMIEEIDSDGSG 109
+ R F + + ++ L I++++ + M+ +DSD +G
Sbjct: 4 RQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTG 62
Query: 110 TIDFD----------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEV 159
+ F+ ++ FD ++ G+I + + E G ++ + II+
Sbjct: 63 KLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIR-R 121
Query: 160 DEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDRE 204
D G ++F+ F + + + AF D++
Sbjct: 122 YSDEGGNMDFDNFISCLVRL------------DAMFRAFKSLDKD 154
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 71.7 bits (176), Expect = 5e-16
Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 34/166 (20%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISEL--DPNLDYEELNEMIEEI-------- 103
+ +++ F D + +G IT + + + E +++ +
Sbjct: 2 DLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFL 61
Query: 104 -DSDGSGTIDFD---------------------VLTRAFEAFDQEKKGSIPTDMVGTIME 141
G ID L F A D + +I D G
Sbjct: 62 TAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFG 121
Query: 142 MLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENP 187
MLG + +D + G L EF + F + ++
Sbjct: 122 MLGL--DKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFFMNDGDST 165
Score = 70.5 bits (173), Expect = 1e-15
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 26 DEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIIS 85
G ++ F + ++ E + L F D + I+ D
Sbjct: 63 AVAGGKGIDETTFINSMKEMVKNPEA-KSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFG 121
Query: 86 ELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAF---DQEKKGS 130
L LD + ID++ G + + A F D +
Sbjct: 122 ML--GLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFFMNDGDSTNK 167
Score = 44.7 bits (106), Expect = 3e-06
Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 18/125 (14%)
Query: 94 EELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALN 153
+++ ID D G I E F +E + + +M+ L
Sbjct: 6 QKMKTYFNRIDFDKDGAITRMDFESMAERFAKE--SEMKAEHAKVLMDSLTGVWDNFL-- 61
Query: 154 EIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYD--------REE 205
G ++ F + ++ E + L F D R+E
Sbjct: 62 -----TAVAGGKGIDETTFINSMKEMVKNPEA-KSVVEGPLPLFFRAVDTNEDNNISRDE 115
Query: 206 FMSIM 210
+
Sbjct: 116 YGIFF 120
Score = 36.6 bits (85), Expect = 0.002
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 4 TIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENP 53
MLG + +D + G L EF + F + ++
Sbjct: 118 IFFGMLGL--DKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFFMNDGDST 165
Score = 28.5 bits (64), Expect = 1.1
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 152 LNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLY---------- 201
+ +D D G + +F ++A +F +E E E + L ++
Sbjct: 8 MKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAK-VLMDSLTGVWDNFLTAVAG 66
Query: 202 ----DREEFMSIMIDVN 214
D F++ M ++
Sbjct: 67 GKGIDETTFINSMKEMV 83
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 71.1 bits (174), Expect = 6e-16
Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 20 EIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDV 79
+ + ++ L+ ++ +E+ + + +M +D GNG I
Sbjct: 19 QQEERLEGINKQFLDDPKY---------SNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMS 69
Query: 80 LREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
L+ ++ +L + EL +I E+ S T +
Sbjct: 70 LKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYS 104
Score = 55.3 bits (133), Expect = 3e-10
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 10/95 (10%)
Query: 94 EELNEMIEEIDSDGSGTIDF----------DVLTRAFEAFDQEKKGSIPTDMVGTIMEML 143
+ E +E I+ + + + FD G I + ++E L
Sbjct: 18 AQQEERLEGINKQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKL 77
Query: 144 GHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
G P++ L +I+EV +++F +
Sbjct: 78 GVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLG 112
Score = 44.5 bits (105), Expect = 3e-06
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
++E LG P++ L +I+EV +++F +
Sbjct: 71 KRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLG 112
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 70.7 bits (173), Expect = 8e-16
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 48 EEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDG 107
+EEN +E +M +D G I L+ ++ +L + E+ +MI E+
Sbjct: 40 SDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGV 99
Query: 108 SGTIDFD-----------VLTRAFEAFDQEKKGSIPTDM 135
S TI + + + F+ + S P +
Sbjct: 100 SDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPV 138
Score = 61.8 bits (150), Expect = 1e-12
Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 21/125 (16%)
Query: 80 LREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTI 139
L EI E + Y + + E++ + + FD +G I + +
Sbjct: 26 LAEINREFLCDQKYSDEENLPEKLTA----------FKEKYMEFDLNNEGEIDLMSLKRM 75
Query: 140 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFM 199
ME LG P++ + ++I EV S + + +F + R+ + + M
Sbjct: 76 MEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLG-----------KRSAVLKLVM 124
Query: 200 LYDRE 204
+++ +
Sbjct: 125 MFEGK 129
Score = 51.4 bits (123), Expect = 1e-08
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
+ME LG P++ + ++I EV S + + +F + R+ + +
Sbjct: 73 KRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLG-----------KRSAVLK 121
Query: 63 AFMLYDREGNG 73
M+++ + N
Sbjct: 122 LVMMFEGKANE 132
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 68.4 bits (168), Expect = 2e-15
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 28 DGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISEL 87
+ + EF + ++ +++AF + D++ +G+I D L+ +
Sbjct: 19 SAADSFKHKEFFAKVGLASKSLDD--------VKKAFYVIDQDKSGFIEEDELKLFLQNF 70
Query: 88 DP---NLDYEELNEMIEEIDSDGSGTIDFD 114
P L E + + D DG G I D
Sbjct: 71 SPSARALTDAETKAFLADGDKDGDGMIGVD 100
Score = 34.1 bits (79), Expect = 0.007
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+ + + D+DG G + +EF +
Sbjct: 70 FSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAM 105
Score = 27.5 bits (62), Expect = 1.3
Identities = 5/42 (11%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 162 DGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDR 203
+ + EF + + ++++AF + D+
Sbjct: 19 SAADSFKHKEFFAKVGLASKSLD--------DVKKAFYVIDQ 52
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 67.7 bits (166), Expect = 2e-15
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 50 EENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSG 109
E+ A+ F +D G+G I++ L + + L ++ +E+ M+ EID+DG G
Sbjct: 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDG 61
Query: 110 TIDFD 114
I FD
Sbjct: 62 FISFD 66
Score = 57.3 bits (139), Expect = 2e-11
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
R F+ FD G I + +G ++ LG + + + ++ E+D DG G + F+EF
Sbjct: 13 RERIFKRFDTNGDGKISSSELGDALKTLGSV-TPDEVRRMMAEIDTDGDGFISFDEFTDF 71
Query: 176 AAKFLEEEEENPEA 189
A ++ +
Sbjct: 72 ARANRGLVKDVSKI 85
Score = 44.6 bits (106), Expect = 8e-07
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEA 55
G ++ LG + + + ++ E+D DG G + F+EF A ++ +
Sbjct: 34 GDALKTLGSV-TPDEVRRMMAEIDTDGDGFISFDEFTDFARANRGLVKDVSKI 85
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 67.1 bits (165), Expect = 3e-15
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
E + E++EAF L+D G I L+ + L ++ E+ E++ E D +G+G I F
Sbjct: 3 EEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGF 62
Query: 114 D 114
D
Sbjct: 63 D 63
Score = 56.7 bits (138), Expect = 2e-11
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
AF+ FD K GSI + M LG + + E++ E D +G+G + F++F + +
Sbjct: 12 AFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTE 71
Query: 179 FLEEEE 184
++ +
Sbjct: 72 KIKNRD 77
Score = 44.4 bits (106), Expect = 8e-07
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEE 50
M LG + + E++ E D +G+G + F++F + + ++ +
Sbjct: 30 KVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTEKIKNRD 77
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 67.7 bits (166), Expect = 3e-15
Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG 73
S E + + I S + +F + + ++ +++ F + D++ +G
Sbjct: 7 SAEDIKKAIGAFTAADS--FDHKKFFQMVGLKKKSADD--------VKKVFHILDKDKSG 56
Query: 74 YITTDVLREIISELDP---NLDYEELNEMIEEIDSDGSGTIDFD 114
+I D L I+ +L +E ++ D DG G I +
Sbjct: 57 FIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVE 100
Score = 34.2 bits (79), Expect = 0.007
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
S + ++ D+DG G++ EF TL A+
Sbjct: 70 FSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAE 108
Score = 28.0 bits (63), Expect = 1.1
Identities = 7/56 (12%), Positives = 20/56 (35%), Gaps = 10/56 (17%)
Query: 148 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDR 203
S E + + I S + +F + + ++ +++ F + D+
Sbjct: 7 SAEDIKKAIGAFTAADS--FDHKKFFQMVGLKKKSADD--------VKKVFHILDK 52
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 66.0 bits (162), Expect = 7e-15
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 45 FLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISEL-DPNLDYEELNEMIEEI 103
++ +++E E+ AF ++D G+G I D + I+ ++ + L E+ E ++E
Sbjct: 1 WVRQDDE------EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEA 54
Query: 104 DSDGSGTIDFD 114
D DG+G ID
Sbjct: 55 DEDGNGVIDIP 65
Score = 50.2 bits (121), Expect = 6e-09
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLG-HPQSQEALNEIIKEVDEDGSGELEFNEFCT 174
+ RAF+ FD G I D IM+ +G P + + E +KE DEDG+G ++ EF
Sbjct: 10 ILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMD 69
Query: 175 LAAKFLEEEEEN 186
L K +E+
Sbjct: 70 LIKKSKNALKES 81
Score = 37.5 bits (88), Expect = 3e-04
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 3 GTIMEMLG-HPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEEN 52
IM+ +G P + + E +KE DEDG+G ++ EF L K +E+
Sbjct: 31 KFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIKKSKNALKES 81
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 68.4 bits (167), Expect = 1e-14
Identities = 13/112 (11%), Positives = 36/112 (32%), Gaps = 5/112 (4%)
Query: 15 QEALNEIIKEVDEDGSGELEFNEFCTLAAKFL---EEEEENPEAMRAELREAFMLYDREG 71
++ ++ D + + + E+ + K + + + P + + F D G
Sbjct: 59 EDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSG 118
Query: 72 NGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAF 123
+G + + + L ++ + I G T D + +
Sbjct: 119 DGIVDLEEFQNYCKNFQ--LQCADVPAVYNVITDGGKVTFDLNRYKELYYRL 168
Score = 61.5 bits (149), Expect = 3e-12
Identities = 19/176 (10%), Positives = 50/176 (28%), Gaps = 32/176 (18%)
Query: 26 DEDGSGELEFNEFCTLAAKFL---------EEEEENPEAMRAELREAFMLYDREGNGYIT 76
D + G ++ N+F + ++ + + ++ E R+ D + +
Sbjct: 19 DMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVV- 77
Query: 77 TDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF-----DVLTRAFEAFDQEKKGSI 131
+EE M E+ + D + + F+ D G +
Sbjct: 78 ---------------SWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIV 122
Query: 132 PTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENP 187
+ + + + + + G + N + L + L +
Sbjct: 123 DLEEFQNYCKNFQL--QCADVPAVYNVITDGGKVTFDLNRYKELYYRLLTSPAADA 176
Score = 48.4 bits (115), Expect = 2e-07
Identities = 13/104 (12%), Positives = 36/104 (34%), Gaps = 8/104 (7%)
Query: 103 IDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDED 162
+D + G+I + + + KGS+ ++ L ++ ++ D +
Sbjct: 18 LDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASL-----EDEWRDLKGRADIN 72
Query: 163 GSGELEFNEFCTLAAKFL---EEEEENPEAMRAELREAFMLYDR 203
+ + E+ + K + + + P + + F D
Sbjct: 73 KDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDV 116
Score = 40.3 bits (94), Expect = 1e-04
Identities = 18/175 (10%), Positives = 48/175 (27%), Gaps = 27/175 (15%)
Query: 54 EAMRAELREAF-MLYDREGNGYITTDVLREIISELDPNLDY---------------EELN 97
+ + +++ F D +G I + ++++ +E
Sbjct: 4 DFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWR 63
Query: 98 EMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIK 157
++ D + + ++ +E K Q + + K
Sbjct: 64 DLKGRADINKDDVVSWEEYLAMWEKTIATCKS-----------VADLPAWCQNRIPFLFK 112
Query: 158 EVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREEFMSIMID 212
+D G G ++ EF F + + P + +D + +
Sbjct: 113 GMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYR 167
Score = 35.7 bits (82), Expect = 0.005
Identities = 4/48 (8%), Positives = 13/48 (27%), Gaps = 2/48 (4%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENP 53
+ + + + + G + N + L + L +
Sbjct: 131 CKNFQL--QCADVPAVYNVITDGGKVTFDLNRYKELYYRLLTSPAADA 176
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 64.9 bits (159), Expect = 2e-14
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 56 MRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
M ++ F +D G+G I+ L + + L +E+ M+ EID+DG G IDF+
Sbjct: 1 MADDMERIFKRFDTNGDGKISLSELTDALRTLGSTSA-DEVQRMMAEIDTDGDGFIDFN 58
Score = 52.6 bits (127), Expect = 9e-10
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+ R F+ FD G I + + LG + E + ++ E+D DG G ++FNEF +
Sbjct: 5 MERIFKRFDTNGDGKISLSELTDALRTLGSTSADE-VQRMMAEIDTDGDGFIDFNEFISF 63
Query: 176 AAKFLEEEEE 185
++
Sbjct: 64 CNANPGLMKD 73
Score = 39.9 bits (94), Expect = 4e-05
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEE 51
+ LG + E + ++ E+D DG G ++FNEF + ++
Sbjct: 26 TDALRTLGSTSADE-VQRMMAEIDTDGDGFIDFNEFISFCNANPGLMKD 73
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 65.8 bits (161), Expect = 2e-14
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG 73
S + +++ S +F ++ + + L+E F + D + +G
Sbjct: 7 SPSDIAAALRDCQAPDS--FSPKKFFQISGMSKKSSSQ--------LKEIFRILDNDQSG 56
Query: 74 YITTDVLREIISELDPN---LDYEELNEMIEEIDSDGSGTIDFD 114
+I D L+ + + L E + D DG G I +
Sbjct: 57 FIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAE 100
Score = 33.4 bits (77), Expect = 0.013
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
E + + D DG G++ EF +
Sbjct: 70 FESGARVLTASETKTFLAAADHDGDGKIGAEEFQEM 105
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 64.2 bits (157), Expect = 4e-14
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNL------DYEELNEMIEEIDSDG 107
++AEL AF D G+GY+T L+ + LD E ++I+ D +
Sbjct: 3 CKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNS 62
Query: 108 SGTIDFD 114
G I +
Sbjct: 63 DGKISKE 69
Score = 36.4 bits (85), Expect = 7e-04
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEE 48
+ L + +EA ++IK D++ G++ EF A+ L +
Sbjct: 40 KALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAELLCQ 81
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 65.6 bits (160), Expect = 1e-13
Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 23/129 (17%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELRE 62
++ + ++ + + + + D +G ++F E+ L E+ +L+
Sbjct: 46 KRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEH------KLKW 99
Query: 63 AFMLYDREGNGYITTDVLREII-----------------SELDPNLDYEELNEMIEEIDS 105
F +YD++ NG I L +I+ + E ++ + +D
Sbjct: 100 TFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDE 159
Query: 106 DGSGTIDFD 114
+G G + +
Sbjct: 160 NGDGQLSLN 168
Score = 62.1 bits (151), Expect = 3e-12
Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 34/167 (20%)
Query: 46 LEEEEENPEAMRAELREAFMLY-DREGNGYITTDVLREIISELDPNLDYEELNEMIEEID 104
EE A A+L+E + + + +G + + D + + M D
Sbjct: 10 AEENGAVGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFD 69
Query: 105 SDGSGTIDF----------------DVLTRAFEAFDQEKKGSIPTD----MVGTIMEMLG 144
++G TIDF L F+ +D+++ G I +V +I ++
Sbjct: 70 TNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKK 129
Query: 145 H-------------PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+E ++ I VDE+G G+L NEF A +
Sbjct: 130 ACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR 176
Score = 45.6 bits (108), Expect = 2e-06
Identities = 16/104 (15%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 116 LTRAFEAF-DQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT 174
L ++ F ++ G++ ++ + ++ + + + + D +G ++F E+
Sbjct: 24 LQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVA 83
Query: 175 LAAKFLEEEEENPEAMRAELREAFMLYD--------REEFMSIM 210
L E+ +L+ F +YD R+E + I+
Sbjct: 84 ALNLVLRGTLEH------KLKWTFKIYDKDRNGCIDRQELLDIV 121
Score = 30.5 bits (69), Expect = 0.26
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ +E ++ I VDE+G G+L NEF A +
Sbjct: 139 QQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR 176
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 64.8 bits (158), Expect = 4e-13
Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 3 GTIMEMLG-HPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELR 61
T++ + G + ++ + ++++ D + G ++F EF ++E+ E +L+
Sbjct: 43 KTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQ------KLK 96
Query: 62 EAFMLYDREGNGYITTDVLREII------SELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
F LYD +GNG I + L ++ + E +N + +ID + G + +
Sbjct: 97 WYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLE 155
Score = 62.9 bits (153), Expect = 1e-12
Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 25/144 (17%)
Query: 58 AELREAFMLYDREGNGYITTDVLREIISELDPNLDYE-ELNEMIEEIDSDGSGTIDF--- 113
FM+ +G T + ++ N ++++ D++ G +DF
Sbjct: 22 HVWYRTFMMEY--PSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEF 79
Query: 114 -------------DVLTRAFEAFDQEKKGSIP----TDMVGTIMEMLGHP--QSQEALNE 154
L F+ +D + GSI DM + + G +E +N
Sbjct: 80 IAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINL 139
Query: 155 IIKEVDEDGSGELEFNEFCTLAAK 178
+ ++D + GEL EF AK
Sbjct: 140 VFHKIDINNDGELTLEEFINGMAK 163
Score = 39.8 bits (93), Expect = 2e-04
Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 34/130 (26%)
Query: 90 NLDYEELNEMIEE-IDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQS 148
+ +E + + SG + ++
Sbjct: 15 AVPTQETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGL-------------------NQKA 55
Query: 149 QEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYD------ 202
+ ++++ D + G ++F EF ++E+ E +L+ F LYD
Sbjct: 56 NKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQ------KLKWYFKLYDADGNGS 109
Query: 203 --REEFMSIM 210
+ E + +
Sbjct: 110 IDKNELLDMF 119
Score = 34.0 bits (78), Expect = 0.021
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 1 MVGTIMEMLGHP--QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
M + + G +E +N + ++D + GEL EF AK
Sbjct: 118 MFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFINGMAK 163
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 62.3 bits (152), Expect = 5e-13
Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG 73
S + + + S + F + + ++ +++ F + D++ +G
Sbjct: 8 SAKDIESALSSCQAADS--FNYKSFFSTVGLSSKTPDQ--------IKKVFGILDQDKSG 57
Query: 74 YITTDVLREIISEL---DPNLDYEELNEMIEEIDSDGSGTIDFD 114
+I + L+ + L E + D+DG G I +
Sbjct: 58 FIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVE 101
Score = 46.1 bits (110), Expect = 4e-07
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 19/102 (18%)
Query: 91 LDYEELNEMIEEIDSDGSGTIDF--------------DVLTRAFEAFDQEKKGSIPTD-- 134
L +++ + + + ++ D + + F DQ+K G I +
Sbjct: 7 LSAKDIESALSSCQAAD--SFNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEEL 64
Query: 135 -MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+ + + D DG G++ EF +L
Sbjct: 65 QLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSL 106
Score = 34.5 bits (80), Expect = 0.004
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+ + D DG G++ EF +L
Sbjct: 71 FSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSL 106
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 61.2 bits (149), Expect = 7e-13
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
A LR F D +G + + R + +EL + + + + +D+D G I F
Sbjct: 23 GEELARLRSVFAACDANRSGRLEREEFRALCTEL--RVRPADAEAVFQRLDADRDGAITF 80
Query: 114 DVLTRAF 120
R F
Sbjct: 81 QEFARGF 87
Score = 45.8 bits (109), Expect = 4e-07
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
L F A D + G + + + L + + +D D G + F EF
Sbjct: 29 LRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAITFQEFARG 86
Score = 32.7 bits (75), Expect = 0.019
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 3 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+ L + + +D D G + F EF
Sbjct: 50 RALCTELR--VRPADAEAVFQRLDADRDGAITFQEFARG 86
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 61.5 bits (150), Expect = 7e-13
Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 17 ALNEIIKEVD-------EDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDR 69
++ +I+ D E +F L + +++++ F D
Sbjct: 1 SITDILSAEDIAAALQECQDPDTFEPQKF--FQTSGLSKMSA------SQVKDIFRFIDN 52
Query: 70 EGNGYITTDVLREIISELDPN---LDYEELNEMIEEIDSDGSGTIDFD 114
+ +GY+ D L+ + + + L E +++ D+DG G I D
Sbjct: 53 DQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGAD 100
Score = 44.6 bits (106), Expect = 2e-06
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 94 EELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALN 153
++ ++ ID+D SG +D D L + F + ++
Sbjct: 41 SQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSD-----------------ARELTESETK 83
Query: 154 EIIKEVDEDGSGELEFNEFCTL 175
++ D DG G++ +EF +
Sbjct: 84 SLMDAADNDGDGKIGADEFQEM 105
Score = 33.0 bits (76), Expect = 0.015
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+ ++ ++ D DG G++ +EF +
Sbjct: 70 FQSDARELTESETKSLMDAADNDGDGKIGADEFQEM 105
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 59.4 bits (144), Expect = 4e-12
Identities = 10/64 (15%), Positives = 23/64 (35%)
Query: 57 RAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVL 116
+ + F +D I+ + R I + L E+ + + E+ + G + +
Sbjct: 23 YHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDF 82
Query: 117 TRAF 120
F
Sbjct: 83 LSRF 86
Score = 49.0 bits (117), Expect = 3e-08
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 112 DFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNE 171
+ +T+ FE FD K +I + I + E + + E+ + G L++ +
Sbjct: 22 HYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPD 81
Query: 172 FCTLAAKFLEEEEENPEA 189
F ++F E P A
Sbjct: 82 FL---SRFSSETAATPMA 96
Score = 35.9 bits (83), Expect = 0.002
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 4 TIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEA 55
I + E + + E+ + G L++ +F ++F E P A
Sbjct: 48 AICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFL---SRFSSETAATPMA 96
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 60.2 bits (146), Expect = 1e-11
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 3 GTIMEMLG-HPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELR 61
+ P + + + ++ + D + G ++F E+ + L+ + + +LR
Sbjct: 38 KQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQ------KLR 91
Query: 62 EAFMLYDREGNGYITTDVLREII------SELDPNLDYEEL-NEMIEEIDSDGSGTIDFD 114
F LYD +GNG I L II + + + EE N + ++ID +G G + +
Sbjct: 92 WYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLE 151
Score = 56.7 bits (137), Expect = 2e-10
Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 26/144 (18%)
Query: 59 ELREAFMLYDREGNGYITTDVLREIISELDPNLDYEEL-NEMIEEIDSDGSGTIDF---- 113
+ + FM +G +T ++ + + + +M E D + G IDF
Sbjct: 18 QWYKKFM--TECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYV 75
Query: 114 ------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHP-------QSQEALNE 154
L F+ +D + G I + I++ + ++E N
Sbjct: 76 AALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNM 135
Query: 155 IIKEVDEDGSGELEFNEFCTLAAK 178
+ ++D +G GEL EF K
Sbjct: 136 VFDKIDINGDGELSLEEFMEGVQK 159
Score = 39.8 bits (93), Expect = 2e-04
Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 34/130 (26%)
Query: 90 NLDYEELNEMIEE-IDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQS 148
L E ++ ++ + SG + + F + P +
Sbjct: 10 ELSATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNL-------------------SPSA 50
Query: 149 QEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYD------ 202
+ + ++ + D + G ++F E+ + L+ + + +LR F LYD
Sbjct: 51 NKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQ------KLRWYFKLYDVDGNGC 104
Query: 203 --REEFMSIM 210
R E ++I+
Sbjct: 105 IDRGELLNII 114
Score = 29.0 bits (65), Expect = 1.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
++E N + ++D +G GEL EF K
Sbjct: 128 TAEEFTNMVFDKIDINGDGELSLEEFMEGVQK 159
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 60.2 bits (146), Expect = 2e-11
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 21 IIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTD-- 78
I D +G +EF EF F + +++ AF LYD G+I +
Sbjct: 79 IFDVFDVKRNGVIEFGEFVRSLGVFHPSAP-----VHEKVKFAFKLYDLRQTGFIEREEL 133
Query: 79 --VLREIISELDPNLDYEEL----NEMIEEIDSDGSGTIDFD 114
++ ++ E + L + + ++ + D G ID D
Sbjct: 134 KEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDID 175
Score = 35.1 bits (81), Expect = 0.007
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 14/95 (14%)
Query: 124 DQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE 183
G I + + + ++ A + I D +G +EF EF F
Sbjct: 49 SIIDDGLIHKEEFQLALFRNRNRRNLFA-DRIFDVFDVKRNGVIEFGEFVRSLGVFHPSA 107
Query: 184 EENPEAMRAELREAFMLYD--------REEFMSIM 210
+ +++ AF LYD REE ++
Sbjct: 108 P-----VHEKVKFAFKLYDLRQTGFIEREELKEMV 137
Score = 33.2 bits (76), Expect = 0.039
Identities = 4/44 (9%), Positives = 18/44 (40%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
++ +L + +++ + D G+++ +E+ +
Sbjct: 140 LLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSL 183
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 61.4 bits (148), Expect = 3e-11
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 23/128 (17%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG 73
S E ++ +DEDGSG+L EF L K + ++ + D + +G
Sbjct: 573 SIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKY------------QKIYREIDVDRSG 620
Query: 74 YITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD----------VLTRAFEAF 123
+ + +R+ + E L + ++ +D IDFD +L + F+
Sbjct: 621 TMNSYEMRKALEEAGFKLPCQLHQVIVARF-ADDELIIDFDNFVRCLVRLEILFKIFKQL 679
Query: 124 DQEKKGSI 131
D E G+I
Sbjct: 680 DPENTGTI 687
Score = 34.4 bits (78), Expect = 0.023
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 131 IPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK-------FLEEE 183
I ++ ++ S E ++ +DEDGSG+L EF L K + E +
Sbjct: 556 ILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREID 615
Query: 184 EENPEAMRA-ELREAF 198
+ M + E+R+A
Sbjct: 616 VDRSGTMNSYEMRKAL 631
Score = 34.0 bits (77), Expect = 0.034
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 94 EELNEMIEEIDSDGSGTI---DFDVL-------TRAFEAFDQEKKGSIPTDMVGTIMEML 143
E M++ +D DGSG + +F +L + + D ++ G++ + + +E
Sbjct: 575 ETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEA 634
Query: 144 GHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
G + I+ D ++F+ F +
Sbjct: 635 GFKLPCQLHQVIVARFA-DDELIIDFDNFVRCLVR 668
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 56.1 bits (136), Expect = 4e-11
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 59 ELREAFMLYD-REGN-GYITTDVLREIISELDPNL--DYEELNEMIEEIDSDGSGTIDFD 114
E++ AF ++ +EG+ I+ + L+ ++ L P+L L+EMIEE+D +G G + F+
Sbjct: 6 EIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFE 65
Score = 45.7 bits (109), Expect = 3e-07
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 116 LTRAFEAFDQE--KKGSIPTDMVGTIMEMLGHPQ--SQEALNEIIKEVDEDGSGELEFNE 171
+ AFE F + I + + +M+ LG L+E+I+EVD++G GE+ F E
Sbjct: 7 IKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEE 66
Query: 172 FCTLAAK 178
F + K
Sbjct: 67 FLVMMKK 73
Score = 37.6 bits (88), Expect = 2e-04
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 3 GTIMEMLGHPQ--SQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+M+ LG L+E+I+EVD++G GE+ F EF + K
Sbjct: 30 KLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKK 73
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 56.0 bits (135), Expect = 4e-10
Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
Query: 26 DEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIIS 85
+ SG+L +F + +F A F ++D++ NG+I + ++S
Sbjct: 36 RDCPSGQLAREDFVKIYKQFFPFGSPEDFANHL-----FTVFDKDNNGFIHFEEFITVLS 90
Query: 86 ELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGH 145
E+L+ E D + G I FD + + + + +
Sbjct: 91 TTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLN--------EDE 142
Query: 146 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ + +I K +D++ G + +EF +
Sbjct: 143 ATPEMRVKKIFKLMDKNEDGYITLDEFREGSKV 175
Score = 37.5 bits (87), Expect = 0.001
Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 20/138 (14%)
Query: 57 RAELREAFMLYDRE-GNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDV 115
R E+++ + R+ +G + + +I + P E+ +
Sbjct: 24 RREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHL--------------- 68
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
F FD++ G I + T++ +E L+ + D + G + F+E T+
Sbjct: 69 ----FTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTI 124
Query: 176 AAKFLEEEEENPEAMRAE 193
A + E
Sbjct: 125 VASVYKMMGSMVTLNEDE 142
Score = 28.3 bits (63), Expect = 1.4
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ + +I K +D++ G + +EF +
Sbjct: 144 TPEMRVKKIFKLMDKNEDGYITLDEFREGSKV 175
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 57.5 bits (138), Expect = 6e-10
Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 23/129 (17%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG 73
+ ++ +D D +G+L F EF L + + + ++ + +G
Sbjct: 772 GIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIK------------KWQGIYKRFETDRSG 819
Query: 74 YITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD----------VLTRAFEAF 123
I ++ L +L+ + +I D +G +DFD + RAF +
Sbjct: 820 TIGSNELPGAFEAAGFHLNQHIYSMIIRRYS-DETGNMDFDNFISCLVRLDAMFRAFRSL 878
Query: 124 DQEKKGSIP 132
D+ G I
Sbjct: 879 DKNGTGQIQ 887
Score = 55.6 bits (133), Expect = 3e-09
Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 23/132 (17%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG 73
S E+ ++ +D DG+G+L EF L + F +D + +G
Sbjct: 575 SLESCRSMVNLMDRDGNGKLGLVEFNILWNRIR------------NYLTIFRKFDLDKSG 622
Query: 74 YITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD----------VLTRAFEAF 123
++ +R I L + ++ +D IDFD +L + F+
Sbjct: 623 SMSAYEMRMAIEAAGFKLPCQLHQVIVARF-ADDELIIDFDNFVRCLVRLEILFKIFKQL 681
Query: 124 DQEKKGSIPTDM 135
D E G+I D+
Sbjct: 682 DPENTGTIQLDL 693
Score = 42.1 bits (98), Expect = 7e-05
Identities = 33/192 (17%), Positives = 74/192 (38%), Gaps = 37/192 (19%)
Query: 16 EALNEIIKEVDEDGSGELEFNEFCTL-----------------AAKFLEEEEENPEAMRA 58
E L +I K++D + +G ++ + L E N
Sbjct: 672 EILFKIFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEANESEEER 731
Query: 59 ELREAFMLYDREGNGYITTDVLREIISEL---DPNLDYEELN-----EMIEEIDSDGSGT 110
+ R+ F+ + ++ L I++++ P+L + M+ +DSD +G
Sbjct: 732 QFRKLFVQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGK 790
Query: 111 IDFD----------VLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVD 160
+ F+ ++ F+ ++ G+I ++ + E G +Q + II+
Sbjct: 791 LGFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYS 850
Query: 161 EDGSGELEFNEF 172
D +G ++F+ F
Sbjct: 851 -DETGNMDFDNF 861
Score = 33.6 bits (76), Expect = 0.043
Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 20/156 (12%)
Query: 35 FNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISEL------- 87
+ A +E+ + E + + F + + I+ L+ I++ +
Sbjct: 511 QELDDQIQANLPDEKVLSEEEIDDNFKTLFSKLAGD-DMEISVKELQTILNRIISKHKDL 569
Query: 88 -DPNLDYEELNEMIEEIDSDGSGTIDFDVLTR----------AFEAFDQEKKGSIPTDMV 136
E M+ +D DG+G + F FD +K GS+ +
Sbjct: 570 RTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEM 629
Query: 137 GTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEF 172
+E G + I+ D ++F+ F
Sbjct: 630 RMAIEAAGFKLPCQLHQVIVARFA-DDELIIDFDNF 664
Score = 31.3 bits (70), Expect = 0.23
Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 97 NEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEII 156
+++ E + D + F L ++ +I ++ ++ + S E+ ++
Sbjct: 524 EKVLSEEEIDDNFKTLFSKLAGDDMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMV 583
Query: 157 KEVDEDGSGELEFNEFCTLAAK-------FLEEEEENPEAMRA-ELREAF 198
+D DG+G+L EF L + F + + + +M A E+R A
Sbjct: 584 NLMDRDGNGKLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAI 633
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 55.6 bits (134), Expect = 9e-10
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 21 IIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVL 80
+ D +G L F EF + F + ++ +F LYD + G+I +
Sbjct: 90 VFDLFDTKHNGILGFEEFARALSVFHPNAP-----IDDKIHFSFQLYDLKQQGFIERQEV 144
Query: 81 REII--------SELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
++++ L + + +++ EE D+ G ID +
Sbjct: 145 KQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKE 186
Score = 48.7 bits (116), Expect = 2e-07
Identities = 18/136 (13%), Positives = 48/136 (35%), Gaps = 26/136 (19%)
Query: 68 DREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF-------------- 113
+G I + + + + + + + + D+ +G + F
Sbjct: 60 AVIDDGLINKEEFQLALFKTNKKES-LFADRVFDLFDTKHNGILGFEEFARALSVFHPNA 118
Query: 114 ---DVLTRAFEAFDQEKKGSIP----TDMVGTIMEMLGHPQSQEAL----NEIIKEVDED 162
D + +F+ +D +++G I MV + G + ++ +E D
Sbjct: 119 PIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTK 178
Query: 163 GSGELEFNEFCTLAAK 178
G+++ E+ +L +
Sbjct: 179 HDGKIDKEEWRSLVLR 194
Score = 33.3 bits (76), Expect = 0.038
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 1 MVGTIMEMLGHPQSQEAL----NEIIKEVDEDGSGELEFNEFCTLAAK 44
MV + G + ++ +E D G+++ E+ +L +
Sbjct: 147 MVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLR 194
Score = 29.8 bits (67), Expect = 0.57
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 124 DQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE 183
G I + + +S A + + D +G L F EF + F
Sbjct: 60 AVIDDGLINKEEFQLALFKTNKKESLFA-DRVFDLFDTKHNGILGFEEFARALSVFHPNA 118
Query: 184 EENPEAMRAELREAFMLYD--------REEFMSIM 210
+ ++ +F LYD R+E ++
Sbjct: 119 P-----IDDKIHFSFQLYDLKQQGFIERQEVKQMV 148
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 54.8 bits (132), Expect = 1e-09
Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 13/153 (8%)
Query: 26 DEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIIS 85
+ SG L +EF + +F + + A F ++D + NGYI +S
Sbjct: 36 KDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYV-----FNVFDADKNGYIDFKEFICALS 90
Query: 86 ELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGH 145
++L + D D +G I +D + R +A + + E
Sbjct: 91 VTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKR-- 148
Query: 146 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+N+I +D++ G+L EFC + +
Sbjct: 149 ------VNKIFNMMDKNKDGQLTLEEFCEGSKR 175
Score = 29.4 bits (66), Expect = 0.55
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
++ +N+I +D++ G+L EFC + +
Sbjct: 144 TPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKR 175
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 55.0 bits (132), Expect = 1e-09
Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 11/153 (7%)
Query: 26 DEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIIS 85
+ +G + +F ++ AKF + + A F +D +G + +
Sbjct: 44 KDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHV-----FRSFDSNLDGTLDFKEYVIALH 98
Query: 86 ELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGH 145
++L D DG+GTI + + A + +
Sbjct: 99 MTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDEN----- 153
Query: 146 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
++ +I K ++ +L EF
Sbjct: 154 -TPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLA 185
Score = 40.7 bits (95), Expect = 9e-05
Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 20/122 (16%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFML 66
+ + + + D + G L+F E+ + +L AF L
Sbjct: 62 KFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQ------KLEWAFSL 115
Query: 67 YDREGNGYITTDVLREIISELDPNLDYEEL--------------NEMIEEIDSDGSGTID 112
YD +GNG I+ + + EI+ + + E++ ++ + + +
Sbjct: 116 YDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLT 175
Query: 113 FD 114
Sbjct: 176 EK 177
Score = 30.3 bits (68), Expect = 0.34
Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 21/135 (15%)
Query: 59 ELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTR 118
++F+ G IT + I ++ P+ D + + +
Sbjct: 37 SWYQSFL--KDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHV------------------ 76
Query: 119 AFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
F +FD G++ + M ++ + L D DG+G + NE +
Sbjct: 77 -FRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMA 135
Query: 179 FLEEEEENPEAMRAE 193
+ + +
Sbjct: 136 IFKMITPEDVKLLPD 150
Score = 28.8 bits (64), Expect = 1.1
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
++ +I K ++ +L EF
Sbjct: 154 TPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLA 185
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 54.5 bits (131), Expect = 2e-09
Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 13/153 (8%)
Query: 26 DEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIIS 85
+ SG L EF + F + + A F +D G+G I +S
Sbjct: 36 RDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHV-----FRTFDANGDGTIDFREFIIALS 90
Query: 86 ELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGH 145
++L D DG+G I + +A + +
Sbjct: 91 VTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMK--------MPEDE 142
Query: 146 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
++ +I +++D + G+L EF A
Sbjct: 143 STPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKS 175
Score = 51.4 bits (123), Expect = 2e-08
Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 18/120 (15%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFML 66
+ + + + + D +G G ++F EF + + E +L+ AF +
Sbjct: 54 NFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQ------KLKWAFSM 107
Query: 67 YDREGNGYITTDVLREII--------SELDPNLDYEELNE----MIEEIDSDGSGTIDFD 114
YD +GNGYI+ + EI+ S + D + + ++D++ G + +
Sbjct: 108 YDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLE 167
Score = 31.4 bits (71), Expect = 0.15
Identities = 21/148 (14%), Positives = 52/148 (35%), Gaps = 36/148 (24%)
Query: 72 NGYITTDVLREIISELDPNLDYEELNEMIEE-IDSDGSGTIDFDVLTRAFEAFDQEKKGS 130
N + +V+++++ + E+ E + + SG + + + + F
Sbjct: 5 NSKLRPEVMQDLLEST--DFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNF------- 55
Query: 131 IPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAM 190
+ + + + + D +G G ++F EF + + E
Sbjct: 56 ------------FPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQ---- 99
Query: 191 RAELREAFMLYD--------REEFMSIM 210
+L+ AF +YD + E + I+
Sbjct: 100 --KLKWAFSMYDLDGNGYISKAEMLEIV 125
Score = 29.8 bits (67), Expect = 0.51
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
++ +I +++D + G+L EF A
Sbjct: 144 TPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKS 175
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 55.4 bits (134), Expect = 2e-09
Identities = 9/102 (8%), Positives = 23/102 (22%), Gaps = 12/102 (11%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEF--CTLAAKFLEEEEENPEAMRAELREAFMLYDREG 71
+ E + L+F+ F L ++ + + + +
Sbjct: 343 CDPGMTAFEPEALGNLVEGLDFHRFYFENLWSRNSKPVHTT-------ILNPHIHLMGDE 395
Query: 72 NGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
+ I + + LD + G
Sbjct: 396 SACIAYIRITQY---LDAGGIPRTAQSEETRVWHRRDGKWQI 434
Score = 47.3 bits (113), Expect = 1e-06
Identities = 15/151 (9%), Positives = 39/151 (25%), Gaps = 36/151 (23%)
Query: 39 CTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNE 98
LA + ++ ++ E + G+ T + ++ +P
Sbjct: 306 VMLATRNFSVRKQEII----KVTEQLIEAISNGDFESYTKMCDPGMTAFEP--------- 352
Query: 99 MIEEIDSDGSGTIDF-----------------DVLTRAFEAFDQEKKGSIPTDMVGTIME 141
E + +DF + ++ I + ++
Sbjct: 353 ---EALGNLVEGLDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLD 409
Query: 142 MLGHPQSQEALNEIIKEVDEDGSGELEFNEF 172
G P++ + V G+ + F
Sbjct: 410 AGGIPRTAQ---SEETRVWHRRDGKWQIVHF 437
Score = 26.9 bits (60), Expect = 5.6
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEF 38
++ G P++ + V G+ + F
Sbjct: 407 YLDAGGIPRTAQ---SEETRVWHRRDGKWQIVHF 437
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 53.4 bits (128), Expect = 3e-09
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 26/129 (20%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNG 73
S + ++ ++ +G L+ EF L + + F G
Sbjct: 44 SLDECRSLVALMELKVNGRLDQEEFARLWKRL------------VHYQHVFQKVQT-SPG 90
Query: 74 YITTDVLREIISELDPNLDYEELNEMIEEI---DSDGSGTIDFD----------VLTRAF 120
+ + L + I D E++ + SD G + F + + F
Sbjct: 91 VLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGRVSFPSLVCFLMRLEAMAKTF 150
Query: 121 EAFDQEKKG 129
++ KG
Sbjct: 151 RNLSKDGKG 159
Score = 34.1 bits (78), Expect = 0.016
Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 43/169 (25%)
Query: 72 NGYITTDVLREIISELDPN------LDYEELNEMIEEIDSDGSGTIDFD----------V 115
I L+ ++++ +E ++ ++ +G +D +
Sbjct: 18 GSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRLVH 77
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQ----SQEALNEIIKEVDEDGSGELEFNE 171
F+ G + + + +E + S+E L+ + D G + F
Sbjct: 78 YQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS-DSVGRVSFPS 135
Query: 172 FCTLAAKFLEEEEENPEAMRAELREAFMLYDR---------EEFMSIMI 211
+ LE + + F + E+MS+++
Sbjct: 136 LVCFLMR-LE-----------AMAKTFRNLSKDGKGLYLTEMEWMSLVM 172
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 53.2 bits (128), Expect = 3e-09
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 15/105 (14%)
Query: 20 EIIKEVDED-GSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTD 78
I + L F +F L + F + + AF ++D + +G + +
Sbjct: 64 RICRVFSTSPAKDSLSFEDFLDLLSVFSDTAT-----PDIKSHYAFRIFDFDDDGTLNRE 118
Query: 79 VLREIISEL-----DPNLDYEELNE----MIEEIDSDGSGTIDFD 114
L +++ L D L E+ + ++EE D D GTI+
Sbjct: 119 DLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 163
Score = 29.7 bits (67), Expect = 0.52
Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 18/98 (18%)
Query: 122 AFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDED-GSGELEFNEFCTLAAKFL 180
+ + + +P + + ++ E+ +P + I + L F +F L + F
Sbjct: 36 SVESSLRAQVPFEQILSLPELKANPFKER----ICRVFSTSPAKDSLSFEDFLDLLSVFS 91
Query: 181 EEEEENPEAMRAELREAFMLYD--------REEFMSIM 210
+ + AF ++D RE+ ++
Sbjct: 92 DTAT-----PDIKSHYAFRIFDFDDDGTLNREDLSRLV 124
Score = 27.4 bits (61), Expect = 2.6
Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 1 MVGTIMEM-LGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ G + L + ++ ++ I++E D D G + +EF + ++
Sbjct: 127 LTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR 171
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 50.6 bits (122), Expect = 3e-09
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 60 LREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRA 119
F D G+G ++ + ++ +S+ + + L + + ID+DG+G ID + +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Query: 120 FEA 122
+ +
Sbjct: 62 YGS 64
Score = 46.0 bits (110), Expect = 2e-07
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 20/80 (25%)
Query: 96 LNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEI 155
+ +EID +G G + ++ + + ++++ L I
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAF--------------------VSKKRAIKNEQLLQLI 41
Query: 156 IKEVDEDGSGELEFNEFCTL 175
K +D DG+GE++ NEF
Sbjct: 42 FKSIDADGNGEIDQNEFAKF 61
Score = 41.0 bits (97), Expect = 1e-05
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 18 LNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITT 77
+ KE+D +G G + + E +K + E L+ F D +GNG I
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNE------QLLQLIFKSIDADGNGEIDQ 55
Query: 78 DVLREIISEL 87
+ + +
Sbjct: 56 NEFAKFYGSI 65
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 41
+ ++++ L I K +D DG+GE++ NEF
Sbjct: 26 VSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Score = 32.9 bits (76), Expect = 0.009
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 14/67 (20%)
Query: 152 LNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDR-------- 203
+ KE+D +G G + + E +K + E L+ F D
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNE------QLLQLIFKSIDADGNGEIDQ 55
Query: 204 EEFMSIM 210
EF
Sbjct: 56 NEFAKFY 62
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 53.3 bits (128), Expect = 5e-09
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 20 EIIKEVDED-GSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTD 78
I + L F +F L + F + + + AF ++D + +G + +
Sbjct: 95 RICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPD-----IKSHYAFRIFDFDDDGTLNRE 149
Query: 79 VLREIISEL-----DPNLDYEELNE----MIEEIDSDGSGTIDFD 114
L +++ L D L E+ + ++EE D D GTI+
Sbjct: 150 DLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 194
Score = 45.6 bits (108), Expect = 2e-06
Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 29/148 (19%)
Query: 57 RAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF--- 113
L + + + + + + EL N E + + S ++ F
Sbjct: 58 CELLPQEQRSVESSLRAQVPFEQILSL-PELKANPFKERICRVFST--SPAKDSLSFEDF 114
Query: 114 --------------DVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNE----- 154
AF FD + G++ + + ++ L L+
Sbjct: 115 LDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQ 174
Query: 155 ----IIKEVDEDGSGELEFNEFCTLAAK 178
I++E D D G + +EF + ++
Sbjct: 175 LIDNILEESDIDRDGTINLSEFQHVISR 202
Score = 28.7 bits (64), Expect = 1.1
Identities = 12/84 (14%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 123 FDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDED-GSGELEFNEFCTLAAKFLE 181
+ + +P + + ++ E+ +P + I + L F +F L + F +
Sbjct: 68 VESSLRAQVPFEQILSLPELKANPFKER----ICRVFSTSPAKDSLSFEDFLDLLSVFSD 123
Query: 182 EEEENPEAMRAELREAFMLYDREE 205
+ + AF ++D ++
Sbjct: 124 TATPD-----IKSHYAFRIFDFDD 142
Score = 28.3 bits (63), Expect = 1.5
Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 1 MVGTIMEM-LGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ G + L + ++ ++ I++E D D G + +EF + ++
Sbjct: 158 LTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 6e-09
Identities = 40/283 (14%), Positives = 87/283 (30%), Gaps = 97/283 (34%)
Query: 2 VGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRA--- 58
G M++ ++ +A ++ D F+ L+ NP +
Sbjct: 1629 QGMGMDLY---KTSKAAQDVWNRADNHFKDTYGFS--------ILDIVINNPVNLTIHFG 1677
Query: 59 -----ELREAF--MLYDREGNGYITTDVLREIISELDPNL-------DYEELN------- 97
+RE + M+++ +G + T +I E++ + + L+
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKT---EKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 98 ----------EMIEE---IDSD--------G--------SGTIDFD-----VLTR---AF 120
E ++ I +D G + + + V R
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 121 EAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELE---FNEFC---- 173
A +++ G M+ + SQEAL +++ V + +E +N
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN--VENQQ 1852
Query: 174 -----TLAAKFLEEEEENPEAMR------AELREAFMLYDREE 205
L A L+ ++ EL+++ L + E
Sbjct: 1853 YVAAGDLRA--LDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 32.3 bits (73), Expect = 0.13
Identities = 35/184 (19%), Positives = 59/184 (32%), Gaps = 65/184 (35%)
Query: 10 GHPQSQEALNEIIKEV----DED-----GSGE-LEF-NEFCTLAAKF----LEE------ 48
G PQS LN +++ D S L+F N F +A+ F L
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 49 ---EEENPEAMRAELREAFMLYD-------REGNGYITTDVLREIISELDPNLDYEELNE 98
+ N +++ +YD R +G I+ ++ II P + +E +
Sbjct: 441 KDLVKNNVSFNAKDIQIP--VYDTFDGSDLRVLSGSISERIVDCIIRL--P-VKWETTTQ 495
Query: 99 MIEEIDSDGSGT--IDFD--------VLTRAFEAFDQEKKGS-----IPTDMVGTIMEML 143
T +DF VLT + K G+ + + +
Sbjct: 496 F--------KATHILDFGPGGASGLGVLT------HRNKDGTGVRVIVAGTLDINPDDDY 541
Query: 144 GHPQ 147
G Q
Sbjct: 542 GFKQ 545
Score = 31.6 bits (71), Expect = 0.20
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 51/126 (40%)
Query: 39 CTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNE 98
+L LE+ EN E + ML + NL E++ +
Sbjct: 317 TSLPPSILEDSLENNEG-----VPSPML------------SIS--------NLTQEQVQD 351
Query: 99 MIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSI-----PTDMVGTIMEMLGHPQSQEALN 153
+ + +S K+ I ++V + G PQS LN
Sbjct: 352 YVNKTNSH----------------LPAGKQVEISLVNGAKNLVVS-----GPPQSLYGLN 390
Query: 154 EIIKEV 159
+++
Sbjct: 391 LTLRKA 396
Score = 31.2 bits (70), Expect = 0.28
Identities = 27/202 (13%), Positives = 52/202 (25%), Gaps = 81/202 (40%)
Query: 34 EFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDY 93
+FN+ L ++ AEL F+ GY++
Sbjct: 36 QFNK--ILPEPTEGFAADDEPTTPAELVGKFL-------GYVS----------------- 69
Query: 94 EELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQE-KKG--------SIPTDMVGTIME--- 141
++ G D VL F+ +G + + T+++
Sbjct: 70 -------SLVEPSKVGQFD-QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 142 ----------MLGHPQSQEALNEIIKEVDED---------GSGELE--FNE--------- 171
M P +++ + + + V E G G + F E
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 172 -----FCTLAAKFLEEEEENPE 188
+A+ L E
Sbjct: 182 VLVGDLIKFSAETLSELIRTTL 203
Score = 30.0 bits (67), Expect = 0.60
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 38/112 (33%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAEL 60
M+ + SQEAL +++ V + +E N
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLVE-------IV--------N-------- 1845
Query: 61 REAFMLYDREGNGYITT------DVLREIISELD-PNLDYEELNE--MIEEI 103
Y+ E Y+ D + +++ + +D EL + +EE+
Sbjct: 1846 ------YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 52.5 bits (126), Expect = 7e-09
Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 15/154 (9%)
Query: 26 DEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIIS 85
+E SG + F + A+F + + A F +D G + + +S
Sbjct: 29 NEXPSGVVNEETFKQIYAQFFPHGDASTYAHYL-----FNAFDTTQTGSVKFEDFVTALS 83
Query: 86 ELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGH 145
L +E+L D + G I+ + + +A DM+G +
Sbjct: 84 ILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI---------YDMMGKYTYPVLK 134
Query: 146 PQSQEAL-NEIIKEVDEDGSGELEFNEFCTLAAK 178
+ + +++D++ G + +EF +
Sbjct: 135 EDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQE 168
Score = 43.3 bits (102), Expect = 1e-05
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 21 IIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVL 80
+ D +G ++F +F T + L +LR F LYD +GYI + +
Sbjct: 61 LFNAFDTTQTGSVKFEDFVTALSILLRGTVHE------KLRWTFNLYDINKDGYINKEEM 114
Query: 81 REII--------SELDPNLDYEELNEMIEEI----DSDGSGTIDFD 114
+I+ P L + + ++ D + G + D
Sbjct: 115 MDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLD 160
Score = 26.7 bits (59), Expect = 4.9
Identities = 4/32 (12%), Positives = 16/32 (50%)
Query: 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
++ ++ +++D++ G + +EF +
Sbjct: 137 TPRQHVDVFFQKMDKNKDGIVTLDEFLESXQE 168
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 52.2 bits (125), Expect = 1e-08
Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
Query: 26 DEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIIS 85
+E SG + F + ++F + + A F +D + NG ++ + + +S
Sbjct: 75 NECPSGVVNEETFKEIYSQFFPQGDSTTYAHFL-----FNAFDTDHNGAVSFEDFIKGLS 129
Query: 86 ELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGH 145
L E+LN D + G I + + +A M +L
Sbjct: 130 ILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDM--------MGKCTYPVLKE 181
Query: 146 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
++ + +++D++ G + +EF K
Sbjct: 182 DAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK 214
Score = 44.5 bits (105), Expect = 6e-06
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 18/106 (16%)
Query: 21 IIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVL 80
+ D D +G + F +F + L + +L AF LYD +GYIT + +
Sbjct: 107 LFNAFDTDHNGAVSFEDFIKGLSILLRGTVQE------KLNWAFNLYDINKDGYITKEEM 160
Query: 81 REII------------SELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+I+ L + + + +++D + G + D
Sbjct: 161 LDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTID 206
Score = 28.3 bits (63), Expect = 1.6
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
++ + +++D++ G + +EF K
Sbjct: 183 APRQHVETFFQKMDKNKDGVVTIDEFIESCQK 214
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 51.6 bits (123), Expect = 3e-08
Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 15/154 (9%)
Query: 26 DEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIIS 85
+E +G ++ + F + ++F + + A F +D +GNG I + +S
Sbjct: 102 NECPTGLVDEDTFKLIYSQFFPQGDATTYAHFL-----FNAFDADGNGAIHFEDFVVGLS 156
Query: 86 ELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEM-LG 144
L +E+L D + G I + + ++ DM+G L
Sbjct: 157 ILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIY---------DMMGRHTYPILR 207
Query: 145 HPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
E + +++D + G + +EF K
Sbjct: 208 EDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQK 241
Score = 43.9 bits (103), Expect = 1e-05
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 21 IIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVL 80
+ D DG+G + F +F + L +L+ AF LYD +G IT + +
Sbjct: 134 LFNAFDADGNGAIHFEDFVVGLSILLRGTVHE------KLKWAFNLYDINKDGCITKEEM 187
Query: 81 REII--------SELDPNLDYEELNEMIEEI----DSDGSGTIDFD 114
I+ P L + E +E D + G + D
Sbjct: 188 LAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTID 233
Score = 28.1 bits (62), Expect = 1.9
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
E + +++D + G + +EF K
Sbjct: 210 APLEHVERFFQKMDRNQDGVVTIDEFLETCQK 241
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 51.1 bits (122), Expect = 3e-08
Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 21/157 (13%)
Query: 26 DEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIIS 85
+E SG + F + A+F + + A F +D G + + +S
Sbjct: 62 NECPSGVVNEETFKQIYAQFFPHGDASTYAHYL-----FNAFDTTQTGSVKFEDFVTALS 116
Query: 86 ELDPNLDYEELNEMIEEIDSDGSGTID----FDVLTRAFEAFDQEKKGSIPTDMVGTIME 141
L +E+L D + G I+ D++ ++ + + D
Sbjct: 117 ILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTP----- 171
Query: 142 MLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
++ ++ +++D++ G + +EF +
Sbjct: 172 -------RQHVDVFFQKMDKNKDGIVTLDEFLESCQE 201
Score = 45.0 bits (106), Expect = 5e-06
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 21 IIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVL 80
+ D +G ++F +F T + L +LR F LYD +GYI + +
Sbjct: 94 LFNAFDTTQTGSVKFEDFVTALSILLRGTVHE------KLRWTFNLYDINKDGYINKEEM 147
Query: 81 REII--------SELDPNLDYEELNEMIEEI----DSDGSGTIDFD 114
+I+ P L + + ++ D + G + D
Sbjct: 148 MDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLD 193
Score = 28.0 bits (62), Expect = 2.1
Identities = 4/32 (12%), Positives = 16/32 (50%)
Query: 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
++ ++ +++D++ G + +EF +
Sbjct: 170 TPRQHVDVFFQKMDKNKDGIVTLDEFLESCQE 201
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 50.6 bits (121), Expect = 3e-08
Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 13/153 (8%)
Query: 26 DEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIIS 85
+ SG+L+ F + +F + A F ++D +G I + +S
Sbjct: 36 KDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFV-----FNVFDENKDGRIEFSEFIQALS 90
Query: 86 ELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGH 145
E+L + D D G I + + +A Q ++ E
Sbjct: 91 VTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKR-- 148
Query: 146 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
++ I +D++ G+L EF +
Sbjct: 149 ------VDRIFAMMDKNADGKLTLQEFQEGSKA 175
Score = 28.3 bits (63), Expect = 1.5
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
++ ++ I +D++ G+L EF +
Sbjct: 144 TPEKRVDRIFAMMDKNADGKLTLQEFQEGSKA 175
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 48.2 bits (115), Expect = 8e-08
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTID 112
P++ R + R+ F +D+ +G++T R I+ + +L +L + D D G +
Sbjct: 9 PQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQS--SLPQAQLASIWNLSDIDQDGKLT 66
Query: 113 FD 114
+
Sbjct: 67 AE 68
Score = 44.4 bits (105), Expect = 2e-06
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 117 TRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT 174
+ F + D+ G + TI+ PQ+Q L I D D G+L EF
Sbjct: 17 RQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQ--LASIWNLSDIDQDGKLTAEEFIL 72
Score = 33.6 bits (77), Expect = 0.013
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCT 40
Q L I D D G+L EF
Sbjct: 46 PQAQLASIWNLSDIDQDGKLTAEEFIL 72
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 45.1 bits (107), Expect = 6e-07
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTID 112
A +A+ E F+ D++ +G+++ +REI + L L + D+ G +
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT--GLPSTLLAHIWSLCDTKDCGKLS 62
Query: 113 FD 114
D
Sbjct: 63 KD 64
Score = 39.7 bits (93), Expect = 7e-05
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 120 FEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT 174
F D++ G + V I G P + L I D G+L ++F
Sbjct: 16 FLKTDKDMDGFVSGLEVREIFLKTGLPSTL--LAHIWSLCDTKDCGKLSKDQFAL 68
Score = 31.6 bits (72), Expect = 0.044
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCT 40
L I D G+L ++F
Sbjct: 42 PSTLLAHIWSLCDTKDCGKLSKDQFAL 68
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 45.1 bits (107), Expect = 1e-06
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTID 112
E R F + + +I+ V + ++ L EL+ + E D+D G +
Sbjct: 17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKS--KLSIPELSYIWELSDADCDGALT 74
Query: 113 FD 114
Sbjct: 75 LP 76
Score = 40.1 bits (94), Expect = 5e-05
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 117 TRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT 174
F + + I + + L+ I + D D G L EFC
Sbjct: 25 VNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPE--LSYIWELSDADCDGALTLPEFCA 80
Score = 31.6 bits (72), Expect = 0.049
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCT 40
S L+ I + D D G L EFC
Sbjct: 54 SIPELSYIWELSDADCDGALTLPEFCA 80
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 44.3 bits (105), Expect = 1e-06
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTID 112
+ R F + NG+I +E ++ L EL+ + E D D G +
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS--KLPILELSHIWELSDFDKDGALT 61
Query: 113 FD 114
D
Sbjct: 62 LD 63
Score = 42.8 bits (101), Expect = 5e-06
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 117 TRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT 174
F+ + G IP P + L+ I + D D G L +EFC
Sbjct: 12 VNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILE--LSHIWELSDFDKDGALTLDEFCA 67
Score = 31.6 bits (72), Expect = 0.048
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 2 VGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT 40
P + L+ I + D D G L +EFC
Sbjct: 31 AKEFFTKSKLPILE--LSHIWELSDFDKDGALTLDEFCA 67
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 45.7 bits (107), Expect = 5e-06
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 16/105 (15%)
Query: 116 LTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+ D+ K + + ++ L +I +E D + LE E T
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETF 72
Query: 176 AAKFLEEEEENPEAMRAELREAFMLY-------DREEFMSIMIDV 213
+ RAE+ AF E ++ +
Sbjct: 73 YKMLTQ---------RAEIDRAFEEAAGSAETLSVERLVTFLQHQ 108
Score = 34.1 bits (77), Expect = 0.026
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 9/101 (8%)
Query: 2 VGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELR 61
+ ++ L +I +E D + LE E T + RAE+
Sbjct: 33 LKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETFYKMLTQ---------RAEID 83
Query: 62 EAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEE 102
AF ++ + + L + E
Sbjct: 84 RAFEEAAGSAETLSVERLVTFLQHQQREEEAGPALALSLIE 124
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 2e-05
Identities = 41/242 (16%), Positives = 77/242 (31%), Gaps = 59/242 (24%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT----LAAKFLEE-EEEN----PEA 55
+ +M S+E ++ II D F + + KF+EE N
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 56 MRAELREAFMLYDREGNGYITT-DVLREIISELDP-NL----DYEELNEMIEEIDSD--- 106
++ E R+ M+ YI D L N+ Y +L + + E+
Sbjct: 98 IKTEQRQPSMMTRM----YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 107 ------GSG-TIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEM-LGHPQSQEALNEIIKE 158
GSG T + A + K + M I + L + S E + E++
Sbjct: 154 LIDGVLGSGKT----WV--ALDVCLSYK---VQCKMDFKIFWLNLKNCNSPETVLEML-- 202
Query: 159 VDEDGSGELEFNEFCTLAAKFLEEEEENP-------EAMRAELREAFMLYDREEFMSIMI 211
+ ++ +++AELR E + +++
Sbjct: 203 -----------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 212 DV 213
+V
Sbjct: 252 NV 253
Score = 35.2 bits (80), Expect = 0.014
Identities = 18/167 (10%), Positives = 52/167 (31%), Gaps = 41/167 (24%)
Query: 1 MVGTIM-EMLGHPQ-----SQEALNEIIKE-VDEDGSGELE--FNEFC-----------T 40
++ + + L + + L II+ ++ E F+
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 41 LAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITT--DVLREIISELDPNLDYEELNE 98
L+ + + + + + +L + ++ +++ + + E+ +L+ + L+
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLV-EKQPKESTISIPSIYLELKVKLE---NEYALHR 447
Query: 99 MIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGH 145
I +D + FD + D +GH
Sbjct: 448 SI--VDHY-----------NIPKTFDSDDLIPPYLD--QYFYSHIGH 479
Score = 32.1 bits (72), Expect = 0.12
Identities = 29/238 (12%), Positives = 72/238 (30%), Gaps = 58/238 (24%)
Query: 4 TIMEMLGHPQSQEALNEIIK-----EVDEDGSGELEFNEFCTLAAKFLEEEEENPEAM-- 56
T++EML + L I D + +L + + L + + +
Sbjct: 197 TVLEML------QKLLYQIDPNWTSRSDHSSNIKLRIHSI-QAELRRLLKSKPYENCLLV 249
Query: 57 -----RAELREAF-----MLYDREGNGYITT-DVLREIISELDPNLDYE-ELNEMIEEID 104
A+ AF +L +TT +++ L L+ +
Sbjct: 250 LLNVQNAKAWNAFNLSCKIL--------LTTRF--KQVTDFLSAATTTHISLDHHSMTLT 299
Query: 105 SDGSGTIDFDVLTRAFEAFDQEKKGSIP--TDMVGTIM-EMLGHPQ-----SQEALNEII 156
D ++ L + +E + P ++ + + L + + L II
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 157 KE-VDEDGSGELE--FNEFC-----------TLAAKFLEEEEENPEAMRAELREAFML 200
+ ++ E F+ L+ + + + + + +L + ++
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Score = 28.7 bits (63), Expect = 1.7
Identities = 23/151 (15%), Positives = 46/151 (30%), Gaps = 22/151 (14%)
Query: 74 YITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF-----DVLTRAFEAFD--QE 126
Y D+L N D +++ +M + I S ID D ++ F
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 127 KKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEF-----NEFCTLAAKFLE 181
K+ + V ++ + + L IK S + F +
Sbjct: 74 KQEEMVQKFVEEVLR-----INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 182 EEEENPEAMRAELREAFMLYDREEFMSI--M 210
+ +LR+A + + + I +
Sbjct: 129 YNVSRLQPYL-KLRQALLELRPAKNVLIDGV 158
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 39.4 bits (92), Expect = 9e-05
Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDF 113
+ + + + G + + + L L ++ + D+DG G +
Sbjct: 7 SSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKK--SGLPDLILGKIWDLADTDGKGVLSK 64
Query: 114 D 114
Sbjct: 65 Q 65
Score = 36.3 bits (84), Expect = 0.001
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 120 FEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT 174
+ + G + ++ G P L +I D DG G L EF
Sbjct: 17 YRQVEAGNTGRVLALDAAAFLKKSGLPDLI--LGKIWDLADTDGKGVLSKQEFFV 69
Score = 27.5 bits (61), Expect = 1.4
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCT 40
L +I D DG G L EF
Sbjct: 43 PDLILGKIWDLADTDGKGVLSKQEFFV 69
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 36.3 bits (84), Expect = 0.001
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
L + + A+++I+K++D+ G++ F F +L A
Sbjct: 40 GFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAG 77
Score = 36.3 bits (84), Expect = 0.001
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
L + + A+++I+K++D+ G++ F F +L A
Sbjct: 40 GFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAG 77
Score = 28.6 bits (64), Expect = 0.54
Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 60 LREAFMLYDREGNGYITTDVLREIISE-----LDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+ F + + GY+T + LR ++ + L+ D ++++++++D G + F
Sbjct: 11 MMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQ 69
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 36.7 bits (85), Expect = 0.001
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTID 112
RA+ + F +G+IT D R + L L ++ D + G +D
Sbjct: 28 TVEERAKHDQQFHSLKP-ISGFITGDQARNFFFQS--GLPQPVLAQIWALADMNNDGRMD 84
Query: 113 FD 114
Sbjct: 85 QV 86
Score = 36.4 bits (84), Expect = 0.002
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 120 FEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT 174
F + G I D G PQ L +I D + G ++ EF
Sbjct: 39 FHSLKP-ISGFITGDQARNFFFQSGLPQ--PVLAQIWALADMNNDGRMDQVEFSI 90
Score = 32.5 bits (74), Expect = 0.029
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCT 40
Q L +I D + G ++ EF
Sbjct: 64 PQPVLAQIWALADMNNDGRMDQVEFSI 90
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 35.9 bits (83), Expect = 0.002
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 53 PEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTID 112
+A+ F NG+++ D ++ ++ L + L + E D D G +D
Sbjct: 10 KPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNS--KLPVDILGRVWELSDIDHDGMLD 66
Query: 113 FD 114
D
Sbjct: 67 RD 68
Score = 35.2 bits (81), Expect = 0.003
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 120 FEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
F++ G + D V ++ P L + + D D G L+ +EF
Sbjct: 21 FDSLSP-VNGFLSGDKVKPVLLNSKLPVDI--LGRVWELSDIDHDGMLDRDEFAVA 73
Score = 30.5 bits (69), Expect = 0.14
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTL 41
+ L + + D D G L+ +EF
Sbjct: 46 PVDILGRVWELSDIDHDGMLDRDEFAVA 73
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 34.8 bits (80), Expect = 0.003
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ + LG + A +++ +D + E++F E+C +
Sbjct: 38 LTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 81
Score = 34.8 bits (80), Expect = 0.003
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 135 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ + LG + A +++ +D + E++F E+C +
Sbjct: 38 LTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 81
Score = 27.1 bits (60), Expect = 1.9
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 54 EAMRAELREAFMLY-DREGN-GYITTDVLREIISELDPNL-----DYEELNEMIEEIDSD 106
E + F Y +EG+ + L+E+++ P+ D +++ +DS+
Sbjct: 6 EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSN 65
Query: 107 GSGTIDFD 114
+DF
Sbjct: 66 RDNEVDFQ 73
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 34.8 bits (80), Expect = 0.004
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
ML +++A +++I+ +D + G + F+E+ TL
Sbjct: 46 HMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGG 83
Score = 34.8 bits (80), Expect = 0.004
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
ML +++A +++I+ +D + G + F+E+ TL
Sbjct: 46 HMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGG 83
Score = 25.5 bits (56), Expect = 7.6
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 79 VLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+ +E+ L + + +++I+ +D++ G I FD
Sbjct: 40 LQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFD 75
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 34.9 bits (80), Expect = 0.004
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ + LG + A +++ +D + E++F E+C +
Sbjct: 50 LTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 93
Score = 34.9 bits (80), Expect = 0.004
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 135 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ + LG + A +++ +D + E++F E+C +
Sbjct: 50 LTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 93
Score = 27.6 bits (61), Expect = 1.5
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 58 AELREAFMLY-DREGN-GYITTDVLREIISELDPNL-----DYEELNEMIEEIDSDGSGT 110
+ F Y +EG+ + L+E+++ P+ D +++ +DS+
Sbjct: 22 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNE 81
Query: 111 IDFD 114
+DF
Sbjct: 82 VDFQ 85
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 34.3 bits (79), Expect = 0.004
Identities = 6/39 (15%), Positives = 20/39 (51%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
E+ + ++++++K +D++ E++F E+
Sbjct: 40 KELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTM 78
Score = 34.3 bits (79), Expect = 0.004
Identities = 6/39 (15%), Positives = 20/39 (51%)
Query: 140 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
E+ + ++++++K +D++ E++F E+
Sbjct: 40 KELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTM 78
Score = 25.1 bits (55), Expect = 7.8
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 54 EAMRAELREAFMLY-DREGN-GYITTDVLREIISELDPNL--DYEELNEMIEEIDSDGSG 109
E + F Y REG+ ++ L+E+I + ++++++ +D +
Sbjct: 6 EKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQ 65
Query: 110 TIDFD 114
IDF
Sbjct: 66 EIDFK 70
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 34.5 bits (79), Expect = 0.005
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
LG + A +++ +D + E++F E+C +
Sbjct: 47 SWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSS 84
Score = 34.5 bits (79), Expect = 0.005
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
LG + A +++ +D + E++F E+C +
Sbjct: 47 SWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSS 84
Score = 28.3 bits (63), Expect = 0.87
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 54 EAMRAELREAFMLY-DREGN-GYITTDVLREIISELDPNL-----DYEELNEMIEEIDSD 106
E + F Y +EG+ + L+E+++ P+ D +++ +DS+
Sbjct: 9 EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSN 68
Query: 107 GSGTIDFD 114
+DF
Sbjct: 69 RDNEVDFQ 76
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 34.4 bits (79), Expect = 0.005
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
L + +A+++I+KE+DE+G GE++F EF L A
Sbjct: 43 SFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80
Score = 34.4 bits (79), Expect = 0.005
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
L + +A+++I+KE+DE+G GE++F EF L A
Sbjct: 43 SFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80
Score = 25.9 bits (57), Expect = 3.8
Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 58 AELREAFMLY-DREGN-GYITTDVLREIISE-----LDPNLDYEELNEMIEEIDSDGSGT 110
L F + +EG+ ++ L++++ LD D + ++++++E+D +G G
Sbjct: 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGE 68
Query: 111 IDFD 114
+DF
Sbjct: 69 VDFQ 72
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 33.6 bits (77), Expect = 0.008
Identities = 9/38 (23%), Positives = 24/38 (63%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
L + ++A+++++K++D +G +++F+EF A
Sbjct: 43 GFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAA 80
Score = 33.6 bits (77), Expect = 0.008
Identities = 9/38 (23%), Positives = 24/38 (63%)
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
L + ++A+++++K++D +G +++F+EF A
Sbjct: 43 GFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAA 80
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 33.5 bits (77), Expect = 0.008
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
E + L+++ +E+D++G GE+ F EF L K
Sbjct: 38 EFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKK 75
Score = 33.5 bits (77), Expect = 0.008
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
E + L+++ +E+D++G GE+ F EF L K
Sbjct: 38 EFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKK 75
Score = 33.5 bits (77), Expect = 0.008
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 58 AELREAFMLYD-REGN-GYITTDVLREIISELDPNL--DYEELNEMIEEIDSDGSGTIDF 113
AEL+ F Y +EG+ ++ + L+++I P+L L+++ +E+D +G G + F
Sbjct: 7 AELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSF 66
Query: 114 D 114
+
Sbjct: 67 E 67
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 33.6 bits (77), Expect = 0.009
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ + + + ++EI + +D + +++F EF +L A
Sbjct: 46 NTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAI 83
Score = 33.6 bits (77), Expect = 0.009
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ + + + ++EI + +D + +++F EF +L A
Sbjct: 46 NTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAI 83
Score = 25.1 bits (55), Expect = 9.0
Identities = 11/62 (17%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 60 LREAFMLY-DREGNGY-ITTDVLREIISELDPNL-----DYEELNEMIEEIDSDGSGTID 112
+ F Y R+G+ ++ L++++++ N D ++E+ + +D++ +D
Sbjct: 14 IVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVD 73
Query: 113 FD 114
F
Sbjct: 74 FQ 75
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 33.3 bits (76), Expect = 0.012
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ L + + +I+ ++D + E++FNEF L A
Sbjct: 44 DFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAA 81
Score = 33.3 bits (76), Expect = 0.012
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ L + + +I+ ++D + E++FNEF L A
Sbjct: 44 DFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAA 81
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 33.2 bits (76), Expect = 0.013
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
L + QE ++++++ +D +G GE +F EF A
Sbjct: 43 HFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAM 80
Score = 33.2 bits (76), Expect = 0.013
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
L + QE ++++++ +D +G GE +F EF A
Sbjct: 43 HFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAM 80
Score = 24.8 bits (54), Expect = 10.0
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 60 LREAFMLY-DREGN-GYITTDVLREIISELDPNL-----DYEELNEMIEEIDSDGSGTID 112
L + F Y REG+ + L+E+I+ + + E +++++E +DS+G G D
Sbjct: 11 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECD 70
Query: 113 FD 114
F
Sbjct: 71 FQ 72
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 32.9 bits (75), Expect = 0.017
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ + L+ ++K++D D G+L+F EF L
Sbjct: 47 AFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGG 84
Score = 32.9 bits (75), Expect = 0.017
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ + L+ ++K++D D G+L+F EF L
Sbjct: 47 AFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGG 84
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 33.9 bits (77), Expect = 0.019
Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 12/118 (10%)
Query: 58 AELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLT 117
++ ++ +T D L++ +L L + +D + G + + +
Sbjct: 62 VQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVK 121
Query: 118 RAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
K S + ++ E I++E+D G +E + L
Sbjct: 122 EIIALSASANKLSKIKE------------RADEYTALIMEELDPTNLGYIEMEDLEAL 167
Score = 32.3 bits (73), Expect = 0.069
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 54 EAMRAELREAFMLYDREGNGYITTDVLREII----SELDPNLDYEELNE----MIEEIDS 105
+ LR F + D+ +G +T + ++EII S + E +E ++EE+D
Sbjct: 94 QGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDP 153
Query: 106 DGSGTIDFDVLTRAFEAFDQEK 127
G I+ + L E
Sbjct: 154 TNLGYIEMEDLEALLLQSPSEA 175
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 32.5 bits (74), Expect = 0.026
Identities = 6/44 (13%), Positives = 16/44 (36%)
Query: 1 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ + + N+ + +D + E++F E+ A
Sbjct: 38 LQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLAC 81
Score = 32.5 bits (74), Expect = 0.026
Identities = 6/44 (13%), Positives = 16/44 (36%)
Query: 135 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ + + N+ + +D + E++F E+ A
Sbjct: 38 LQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLAC 81
Score = 26.7 bits (59), Expect = 2.7
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 60 LREAFMLY-DREGNGY-ITTDVLREIISELDPNL-----DYEELNEMIEEIDSDGSGTID 112
+ F Y R G+ Y + L+E++ + + N+ + +D++ +D
Sbjct: 12 IVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVD 71
Query: 113 FD 114
F
Sbjct: 72 FV 73
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 32.1 bits (73), Expect = 0.027
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+G +E L +++ +DE+ +++F E+ A
Sbjct: 45 SFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLAL 82
Score = 32.1 bits (73), Expect = 0.027
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+G +E L +++ +DE+ +++F E+ A
Sbjct: 45 SFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLAL 82
Score = 25.2 bits (55), Expect = 9.0
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 60 LREAFMLY-DREGN-GYITTDVLREIISELDPNL-----DYEELNEMIEEIDSDGSGTID 112
L F Y +EG+ ++ ++E++ + P+ D E L +++ +D + +D
Sbjct: 13 LVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVD 72
Query: 113 FD 114
F
Sbjct: 73 FQ 74
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 33.0 bits (75), Expect = 0.030
Identities = 14/56 (25%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 120 FEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
F G I M P L +I K D D G L+ EF
Sbjct: 57 FYTLSP-VNGKITGANAKKEMVKSKLPN--TVLGKIWKLADVDKDGLLDDEEFALA 109
Score = 30.3 bits (68), Expect = 0.25
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 57 RAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+ E F NG IT ++ + + L L ++ + D D G +D +
Sbjct: 50 KPTYDEIFYTLS-PVNGKITGANAKKEMVKS--KLPNTVLGKIWKLADVDKDGLLDDE 104
Score = 29.5 bits (66), Expect = 0.44
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTL 41
L +I K D D G L+ EF
Sbjct: 82 PNTVLGKIWKLADVDKDGLLDDEEFALA 109
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 32.5 bits (74), Expect = 0.031
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 7 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
++ + +L+E +K +D + EL+FNE+ L +
Sbjct: 53 QLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGE 90
Score = 32.5 bits (74), Expect = 0.031
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 141 EMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
++ + +L+E +K +D + EL+FNE+ L +
Sbjct: 53 QLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGE 90
Score = 26.7 bits (59), Expect = 2.8
Identities = 11/60 (18%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 59 ELREAFMLY-DREGN-GYITTDVLREIISELDPNL--DYEELNEMIEEIDSDGSGTIDFD 114
+ F + +EG ++ + +E++++ P+L D L+E ++ +D + + F+
Sbjct: 23 TVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFN 82
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 32.2 bits (73), Expect = 0.035
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 8 MLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ ++++ + I++++D + +L F EF L A+
Sbjct: 48 LKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMAR 84
Score = 32.2 bits (73), Expect = 0.035
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 142 MLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ ++++ + I++++D + +L F EF L A+
Sbjct: 48 LKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMAR 84
Score = 25.6 bits (56), Expect = 6.6
Identities = 4/26 (15%), Positives = 15/26 (57%)
Query: 89 PNLDYEELNEMIEEIDSDGSGTIDFD 114
N + + + ++E++D++ + F+
Sbjct: 51 ENKNEKVIEHIMEDLDTNADKQLSFE 76
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 31.7 bits (72), Expect = 0.046
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ ++ + KE+D + G + F EF L K
Sbjct: 38 LETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIK 77
Score = 31.7 bits (72), Expect = 0.046
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 139 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ ++ + KE+D + G + F EF L K
Sbjct: 38 LETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIK 77
Score = 28.6 bits (64), Expect = 0.49
Identities = 10/58 (17%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 60 LREAFMLY-DREGNG-YITTDVLREII-SELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
+ + + Y +GN + D L++++ +E + + + +E+D + G ++F
Sbjct: 12 IIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQ 69
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 31.7 bits (72), Expect = 0.051
Identities = 6/33 (18%), Positives = 18/33 (54%)
Query: 12 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+ L ++ ++ D++ +++F+EF +L
Sbjct: 48 KKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGD 80
Score = 31.7 bits (72), Expect = 0.051
Identities = 6/33 (18%), Positives = 18/33 (54%)
Query: 146 PQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+ L ++ ++ D++ +++F+EF +L
Sbjct: 48 KKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGD 80
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 31.9 bits (72), Expect = 0.066
Identities = 16/99 (16%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 80 LREIISELDPNLDYEELNEMIEEI-DSDGSGTIDFD----VLTRAFEAFDQEKKGSIPTD 134
L +I++ + + +EL ++ D DG+ +D +T + E+ + D
Sbjct: 53 LEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSED 112
Query: 135 MVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFC 173
+ I++ ++++ D++ G +++ EF
Sbjct: 113 ELINIID------------GVLRDDDKNNDGYIDYAEFA 139
Score = 25.7 bits (56), Expect = 9.9
Identities = 4/25 (16%), Positives = 15/25 (60%)
Query: 15 QEALNEIIKEVDEDGSGELEFNEFC 39
++ ++++ D++ G +++ EF
Sbjct: 115 INIIDGVLRDDDKNNDGYIDYAEFA 139
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 30.5 bits (69), Expect = 0.087
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 8 MLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 44
+G + +++++D + E+ F E+ T
Sbjct: 43 TIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGA 79
Score = 30.5 bits (69), Expect = 0.087
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 142 MLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAK 178
+G + +++++D + E+ F E+ T
Sbjct: 43 TIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGA 79
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 32.6 bits (74), Expect = 0.093
Identities = 32/200 (16%), Positives = 71/200 (35%), Gaps = 21/200 (10%)
Query: 32 ELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITT-----DVLREIISE 86
+ + +A + + E + AEL+ + DR+ Y + D R
Sbjct: 804 LQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEA 863
Query: 87 LDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPT--DMVGTIMEMLG 144
+ ++++ E+D S I+ D + +++ KG ++ I LG
Sbjct: 864 EKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEEVKRLIRSSLG 923
Query: 145 HPQSQEALNEIIKEVDEDGSGELE-----FNEF-----CTLAAKFLEEEEENPEA----M 190
+ + + + I++ + D + F F A ++EE N +A +
Sbjct: 924 NRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKEENLNEDAAKRYI 983
Query: 191 RAELREAFMLYDREEFMSIM 210
R L+ + + E +
Sbjct: 984 RTSLKREYATENGTELNETL 1003
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural
genomics consortium, TBSGC, rossman fold; HET: CDM;
2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A
2xwn_A*
Length = 231
Score = 32.1 bits (74), Expect = 0.094
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 17/63 (26%)
Query: 100 IEEIDSDG--SGTID--------------FDVLTRAFEAFDQEKKGSIPTDMVGTIMEML 143
I+ +D++G GT + D+L R+++ + + TD ++E +
Sbjct: 142 IKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDAS-LVEHI 200
Query: 144 GHP 146
G
Sbjct: 201 GGQ 203
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 29.5 bits (66), Expect = 0.27
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 16/83 (19%)
Query: 48 EEEENPEAMRAELREAFMLYDREGNGYITTDVLREII------------SELDPNLDYEE 95
EE + + R + F+L+D +G + L + E D EE
Sbjct: 10 EELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEE 69
Query: 96 LNEMIE----EIDSDGSGTIDFD 114
M E +D++ + +
Sbjct: 70 RLRMREHVMKNVDTNQDRLVTLE 92
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 30.3 bits (67), Expect = 0.50
Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 94 EELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALN 153
E+ I D+ G + +F FD++K G + + + +G+ +
Sbjct: 705 NEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFA 764
Query: 154 EIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAF 198
I+ VD + G + F F F+ E + + ++ +F
Sbjct: 765 RIMSIVDPNRMGVVTFQAF----IDFMSRETADTDTAD-QVMASF 804
Score = 29.5 bits (65), Expect = 1.1
Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 13 QSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGN 72
+ E + +++ + + E L +E E R +F +DR+
Sbjct: 684 YTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMN----EFRASFNHFDRKKT 739
Query: 73 GYITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFD 114
G + + R + + N+ E ++ +D + G + F
Sbjct: 740 GMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQ 781
Score = 26.4 bits (57), Expect = 9.8
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 9 LGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYD 68
+G+ + I+ VD + G + F F F+ E + + ++ +F +
Sbjct: 754 MGYNMGEAEFARIMSIVDPNRMGVVTFQAF----IDFMSRETADTDTAD-QVMASFKILA 808
Query: 69 REGNGYITTDVLRE 82
YIT D LR
Sbjct: 809 -GDKNYITVDELRR 821
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 29.4 bits (67), Expect = 0.81
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 18/74 (24%)
Query: 124 DQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEE 183
+E++ +P + + ++ + E I E DE L K+LE E
Sbjct: 186 GEEREAEVPPEERERVQRF------RQEVLEAIVETDEG------------LLEKYLEGE 227
Query: 184 EENPEAMRAELREA 197
E EA+ EA
Sbjct: 228 EVTGEALEKAFHEA 241
Score = 26.3 bits (59), Expect = 9.3
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 12/48 (25%)
Query: 16 EALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREA 63
+ + E I E DE L K+LE EE EA+ EA
Sbjct: 206 QEVLEAIVETDEG------------LLEKYLEGEEVTGEALEKAFHEA 241
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 28.1 bits (62), Expect = 1.5
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 148 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEE--ENPEAMRAELREAFMLYDREE 205
S EAL I K++D+D G +E E + +F+ E+ ++ + L E+
Sbjct: 13 SLEALQTIHKQMDDDKDGGIEVEE----SDEFIREDMKYKDATNKHSHLHREDKHITIED 68
Query: 206 FMS 208
Sbjct: 69 LWK 71
Score = 27.3 bits (60), Expect = 2.8
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMR 57
S EAL I K++D+D G +E E + +F+ E+ + +A
Sbjct: 13 SLEALQTIHKQMDDDKDGGIEVEE----SDEFIREDMKYKDATN 52
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
EF-SAM, STIM1, store operated calcium entry regulator,
SOCE; NMR {Homo sapiens}
Length = 150
Score = 28.1 bits (62), Expect = 1.5
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 14 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAE 59
S EA+ I K +D+D +G+++ E + +FL E+ +
Sbjct: 13 SFEAVRNIHKLMDDDANGDVDVEE----SDEFLREDLNYHDPTVKH 54
Score = 28.1 bits (62), Expect = 1.5
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 148 SQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAE 193
S EA+ I K +D+D +G+++ E + +FL E+ +
Sbjct: 13 SFEAVRNIHKLMDDDANGDVDVEE----SDEFLREDLNYHDPTVKH 54
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 28.2 bits (62), Expect = 2.3
Identities = 15/55 (27%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 120 FEAFDQEKKGSIPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCT 174
F G + T M P S L I K D D G L+ EF
Sbjct: 464 FYNLAP-ADGKLSGSKAKTWMVGTKLPNSV--LGRIWKLSDVDRDGMLDDEEFAL 515
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 27.9 bits (63), Expect = 2.6
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 18/67 (26%)
Query: 131 IPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAM 190
IP DMV E + L E E E+ L K+L EE +
Sbjct: 207 IPADMVELANEW------HQNLIESAAEASEE------------LMEKYLGGEELTEAEI 248
Query: 191 RAELREA 197
+ LR+
Sbjct: 249 KGALRQR 255
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 27.8 bits (63), Expect = 2.6
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 18/67 (26%)
Query: 131 IPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAM 190
IP D + E + +L E + E ++ L K+L +EE + +
Sbjct: 199 IPEDHLDRAEEA------RASLIEAVAETSDE------------LMEKYLGDEEISVSEL 240
Query: 191 RAELREA 197
+ +R+A
Sbjct: 241 KEAIRQA 247
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 27.8 bits (63), Expect = 2.7
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 18/67 (26%)
Query: 131 IPTDMVGTIMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAM 190
IP + + E E L E+ + DE+ + K+LE EE E +
Sbjct: 201 IPEEYLDQAREY------HEKLVEVAADFDEN------------IMLKYLEGEEPTEEEL 242
Query: 191 RAELREA 197
A +R+
Sbjct: 243 VAAIRKG 249
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 27.9 bits (63), Expect = 3.0
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 17 ALNEIIKEVDEDGSGELEFN-------EFCTLAAKFLEEEEENPEAMR 57
+++ I +V +D FN E AK + E++ M+
Sbjct: 724 DVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAPTDGEQDRALMQ 771
Score = 27.9 bits (63), Expect = 3.0
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 151 ALNEIIKEVDEDGSGELEFN-------EFCTLAAKFLEEEEENPEAMR 191
+++ I +V +D FN E AK + E++ M+
Sbjct: 724 DVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAPTDGEQDRALMQ 771
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 27.7 bits (62), Expect = 3.1
Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 27/147 (18%)
Query: 48 EEEENPEAMR--AELREAFMLYDREGNG------YITTDVLREIISELDPNLDY--EELN 97
EE NPEA R + + F N T ++ ++ D
Sbjct: 183 EEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTWKDHVAAWDVIFSKADIYTQ 242
Query: 98 EMIEEIDSDGSGTIDF-DVLTRAFEAF---DQEKKGSIPTDMVG------------TIME 141
E+ GS D+ +L R ++ K ++ T+M+ + E
Sbjct: 243 NFYWELRQKGSVHHDYRGILYRLLGDSKMSFEDIKANV-TEMLAGGVDTTSMTLQWHLYE 301
Query: 142 MLGHPQSQEALNEIIKEVDEDGSGELE 168
M + + Q+ L + G++
Sbjct: 302 MARNLKVQDMLRAEVLAARHQAQGDMA 328
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 27.9 bits (63), Expect = 3.2
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 12/41 (29%)
Query: 96 LNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMV 136
NE ++ + V T KG+ D+V
Sbjct: 246 TNENVKAFKGNERVEA---VET---------DKGTYKADLV 274
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 27.5 bits (62), Expect = 3.3
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 12/41 (29%)
Query: 96 LNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMV 136
L E+ +I+ + V+T G ++V
Sbjct: 208 LQEITMKIEGEERVEK---VVT---------DAGEYKAELV 236
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding,
oxidoreductase, oxygen tolerance; HET: FSX SBY PSW;
2.04A {Desulfovibrio vulgaris}
Length = 317
Score = 27.4 bits (60), Expect = 4.2
Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 20/141 (14%)
Query: 34 EFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYI----TTDVLREIISELD- 88
+F + CT + + EA + ++ L+
Sbjct: 7 DFVKLCTGTVAGFGI----SQMFHPAVHEALAGTLTGERPPVFWLQGQGCTGCSVTLLNS 62
Query: 89 --PNLDYEELNEMIE----EIDSDGSGTIDFDVLTRAFEAFDQEK----KGSIPTDMVGT 138
P++ + L ++I G + + + E F + +GS+P + G
Sbjct: 63 VHPSIA-DVLLKVISLEFHPTVMAWEGEHAIEHMRKVAEKFKGKFFLVIEGSVPVEADGK 121
Query: 139 IMEMLGHPQSQEALNEIIKEV 159
+ + ++ + +KE
Sbjct: 122 YCIIGEANHHEISMVDALKEF 142
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 27.1 bits (61), Expect = 4.3
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 12/41 (29%)
Query: 96 LNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMV 136
E ++E+ +G ++T K DMV
Sbjct: 255 FGETVKEVAGNGKVEK---IIT---------DKNEYDVDMV 283
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 27.4 bits (62), Expect = 4.3
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 12/41 (29%)
Query: 96 LNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMV 136
E +E + DG V+T K + D+V
Sbjct: 210 TGETVERYEGDGRVQK---VVT---------DKNAYDADLV 238
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding
protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A
3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A
3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A
3h3d_X
Length = 351
Score = 26.9 bits (60), Expect = 4.8
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 74 YITTDVLREIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPT 133
I++D E++ ELD ++ + + D +G+ + + E + I
Sbjct: 119 SISSDQQSEMVKELDGHVL-----KCV--KDQNGNHVVQ-----KCIECVQPQSLQFIID 166
Query: 134 DMVGTIMEMLGHPQSQEALNEIIKEVDED 162
G + + HP + I++ +
Sbjct: 167 AFKGQVFVLSTHPYGCRVIQRILEHCTAE 195
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 26.7 bits (60), Expect = 6.6
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 12/41 (29%)
Query: 96 LNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMV 136
E + I+ +G + + T + I D
Sbjct: 208 FEETVLGIEETANGIV---LET---------SEQEISCDSG 236
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 26.5 bits (59), Expect = 6.8
Identities = 16/154 (10%), Positives = 39/154 (25%), Gaps = 24/154 (15%)
Query: 22 IKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFMLYDREGNGYITTDVLR 81
++ G+ +++ F A L ++ E + E +R +L
Sbjct: 163 LRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQP-AIEEVLHALERGELREEVNRILL 221
Query: 82 EIISELDPNLDYEELNEMIEEIDSDGSGTIDFDVLTRAFEAFDQEKKGSIPTDMVGTIME 141
++ LN +D+L + + + +
Sbjct: 222 AQMA------TMHALN-------------ARYDLLVWESDIVRAGLLQ----KALALLEQ 258
Query: 142 MLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTL 175
+ +E +D + F L
Sbjct: 259 SPHVFRPREGKYAGALVMDASPVIPGLEDPFFVL 292
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand,
cytosolic, calcium, coiled coil, disease mutation,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kle_A 2kq6_A 2y4q_A
Length = 123
Score = 25.8 bits (56), Expect = 6.9
Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 6 MEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAFM 65
+ L + ++ + I E G G+L F+E ++ + AE+ F
Sbjct: 36 HKALVKLKLKKNTVDDISESLRQGGGKLNFDEL--------RQDLKGKGHTDAEIEAIFT 87
Query: 66 LYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDS 105
YD++G+ +T +++ +L+ +E ++ + S
Sbjct: 88 KYDQDGDQELTEHEHQQMRDDLE-----KEREDLDLDHSS 122
>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron,
oxidoreductase; HET: NTD; 2.50A {Streptomyces
avermitilis} SCOP: d.32.1.3 d.32.1.3
Length = 381
Score = 26.4 bits (57), Expect = 7.9
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 46 LEEEEENPEAMRAELREAFMLYDREGNGYITTDVLREIISELDPNLDYEELNEMIEEIDS 105
L E + LRE +L DR+ +GY+ + + P + + E+IE S
Sbjct: 303 LGEWVGDTRVPVDTLRELKILADRDEDGYLLQIFTKPVQDR--PTVFF----EIIERHGS 356
Query: 106 DGSGTIDFDVLTRAFEAFDQEKKGSI 131
G G +F L A E +QEK+G++
Sbjct: 357 MGFGKGNFKALFEAIER-EQEKRGNL 381
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 26.4 bits (57), Expect = 9.5
Identities = 11/86 (12%), Positives = 29/86 (33%)
Query: 5 IMEMLGHPQSQEALNEIIKEVDEDGSGELEFNEFCTLAAKFLEEEEENPEAMRAELREAF 64
+ + L + + D E E + + + + L+ A
Sbjct: 211 HLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMAC 270
Query: 65 MLYDREGNGYITTDVLREIISELDPN 90
+ + G ++ D++R+ +SE +
Sbjct: 271 EMAEAMGRDSLSEDLVRKAVSENEAA 296
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.134 0.363
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,722,162
Number of extensions: 251482
Number of successful extensions: 2500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1549
Number of HSP's successfully gapped: 638
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (24.8 bits)