Query psy4730
Match_columns 1513
No_of_seqs 333 out of 1790
Neff 7.7
Searched_HMMs 46136
Date Sat Aug 17 00:29:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08393 DHC_N2: Dynein heavy 100.0 1.1E-75 2.5E-80 718.9 35.9 405 95-507 1-407 (408)
2 PF12774 AAA_6: Hydrolytic ATP 100.0 1E-59 2.2E-64 522.8 13.8 148 1122-1269 84-231 (231)
3 PF12775 AAA_7: P-loop contain 100.0 1.1E-59 2.5E-64 537.9 12.3 268 698-1054 2-272 (272)
4 COG5245 DYN1 Dynein, heavy cha 100.0 2.6E-56 5.6E-61 544.4 39.8 1039 94-1506 427-1967(3164)
5 COG5271 MDN1 AAA ATPase contai 100.0 5.5E-51 1.2E-55 497.4 28.8 715 640-1506 444-1374(4600)
6 COG5271 MDN1 AAA ATPase contai 100.0 5E-41 1.1E-45 410.9 31.7 629 637-1505 864-1689(4600)
7 KOG3595|consensus 100.0 1.1E-41 2.5E-46 463.3 26.7 387 707-1206 105-524 (1395)
8 KOG1808|consensus 99.9 3.7E-26 8E-31 301.7 24.1 519 888-1506 215-875 (1856)
9 KOG1808|consensus 99.9 3.9E-22 8.5E-27 264.0 21.1 334 1119-1488 209-561 (1856)
10 COG5245 DYN1 Dynein, heavy cha 99.8 3.1E-20 6.6E-25 230.6 9.7 320 1118-1510 983-1303(3164)
11 TIGR02640 gas_vesic_GvpN gas v 99.5 7.1E-13 1.5E-17 152.7 15.8 130 1121-1264 104-239 (262)
12 PF07728 AAA_5: AAA domain (dy 99.4 7.1E-13 1.5E-17 137.9 8.5 124 1353-1498 1-139 (139)
13 TIGR01650 PD_CobS cobaltochela 99.4 8.3E-12 1.8E-16 144.4 16.6 173 1120-1307 132-317 (327)
14 PHA02244 ATPase-like protein 99.2 4.4E-11 9.5E-16 139.5 13.5 145 1335-1505 103-260 (383)
15 PRK11034 clpA ATP-dependent Cl 99.2 1.5E-09 3.3E-14 140.4 27.3 130 1353-1505 490-652 (758)
16 TIGR02639 ClpA ATP-dependent C 99.2 1.8E-09 3.9E-14 141.7 25.9 111 1353-1487 486-603 (731)
17 TIGR02640 gas_vesic_GvpN gas v 99.2 1.8E-10 3.9E-15 132.9 14.1 150 1333-1505 3-184 (262)
18 TIGR03345 VI_ClpV1 type VI sec 99.2 4.3E-08 9.2E-13 129.6 37.8 133 1353-1505 598-766 (852)
19 TIGR01650 PD_CobS cobaltochela 99.1 1.5E-10 3.3E-15 134.0 11.7 134 1346-1501 59-214 (327)
20 CHL00095 clpC Clp protease ATP 99.0 2.2E-07 4.8E-12 123.6 32.8 110 1353-1482 541-657 (821)
21 PRK10865 protein disaggregatio 99.0 1.8E-07 3.8E-12 124.3 31.7 132 1353-1505 600-765 (857)
22 TIGR03346 chaperone_ClpB ATP-d 98.8 5.7E-06 1.2E-10 110.6 38.6 115 1352-1487 596-717 (852)
23 PHA02244 ATPase-like protein 98.7 1.3E-07 2.7E-12 111.0 12.0 113 889-1033 184-307 (383)
24 PF07728 AAA_5: AAA domain (dy 98.6 1.6E-08 3.4E-13 105.3 4.0 60 890-955 70-139 (139)
25 COG0542 clpA ATP-binding subun 98.5 6.3E-06 1.4E-10 105.0 23.6 113 1353-1487 523-643 (786)
26 PF07726 AAA_3: ATPase family 98.5 2.2E-07 4.7E-12 92.7 7.8 64 1125-1197 65-129 (131)
27 COG0714 MoxR-like ATPases [Gen 98.4 1.6E-06 3.5E-11 103.8 13.3 108 1125-1241 115-228 (329)
28 KOG0733|consensus 98.3 1.2E-05 2.6E-10 97.0 16.0 46 933-979 329-377 (802)
29 KOG0736|consensus 98.3 2.7E-05 5.7E-10 96.5 18.8 94 626-754 363-456 (953)
30 PRK11331 5-methylcytosine-spec 98.3 5.8E-06 1.2E-10 99.8 12.6 153 1344-1506 187-358 (459)
31 PRK11331 5-methylcytosine-spec 98.2 3.1E-06 6.7E-11 102.1 7.9 70 888-963 275-358 (459)
32 TIGR01243 CDC48 AAA family ATP 98.1 3E-05 6.5E-10 102.7 17.2 122 1351-1506 487-622 (733)
33 KOG0730|consensus 98.1 7.2E-05 1.6E-09 92.0 16.5 128 1350-1508 467-604 (693)
34 COG0714 MoxR-like ATPases [Gen 97.9 3.4E-05 7.4E-10 92.5 9.4 53 646-698 29-81 (329)
35 TIGR03689 pup_AAA proteasome A 97.8 0.0002 4.3E-09 89.1 14.0 46 932-978 332-380 (512)
36 PRK00411 cdc6 cell division co 97.8 0.00045 9.8E-09 85.1 17.3 94 889-995 142-240 (394)
37 KOG0735|consensus 97.7 0.00085 1.8E-08 82.8 16.2 88 1277-1375 621-725 (952)
38 PF01078 Mg_chelatase: Magnesi 97.6 0.00011 2.5E-09 80.1 7.9 49 888-942 109-158 (206)
39 TIGR02881 spore_V_K stage V sp 97.6 0.00023 5E-09 82.5 10.9 46 933-978 143-193 (261)
40 CHL00181 cbbX CbbX; Provisiona 97.6 0.0002 4.4E-09 83.7 10.1 62 905-978 145-211 (287)
41 PF00158 Sigma54_activat: Sigm 97.6 0.0001 2.2E-09 79.1 6.9 123 1340-1485 11-142 (168)
42 TIGR00763 lon ATP-dependent pr 97.6 0.0003 6.6E-09 93.5 11.6 83 892-977 421-506 (775)
43 TIGR01241 FtsH_fam ATP-depende 97.5 0.0002 4.2E-09 90.7 9.1 45 933-978 193-240 (495)
44 PRK08084 DNA replication initi 97.5 0.00015 3.2E-09 82.6 7.0 74 889-975 101-179 (235)
45 cd00009 AAA The AAA+ (ATPases 97.5 0.00042 9.1E-09 71.6 9.5 126 1351-1504 19-150 (151)
46 TIGR02880 cbbX_cfxQ probable R 97.5 0.00038 8.2E-09 81.5 9.8 47 932-978 159-210 (284)
47 PRK14961 DNA polymerase III su 97.4 0.00057 1.2E-08 83.0 11.1 129 1349-1506 36-178 (363)
48 TIGR02928 orc1/cdc6 family rep 97.4 0.0026 5.5E-08 77.6 16.4 59 933-991 165-228 (365)
49 PF00004 AAA: ATPase family as 97.4 0.00021 4.6E-09 73.1 5.9 114 1354-1502 1-128 (132)
50 PRK10733 hflB ATP-dependent me 97.4 0.00073 1.6E-08 87.8 12.0 62 909-979 273-338 (644)
51 PRK07940 DNA polymerase III su 97.4 0.00084 1.8E-08 81.7 11.8 132 1350-1506 35-176 (394)
52 PRK11034 clpA ATP-dependent Cl 97.4 0.00066 1.4E-08 88.8 11.4 80 892-978 564-668 (758)
53 PRK12422 chromosomal replicati 97.4 0.0027 5.8E-08 78.8 16.1 44 935-978 238-286 (445)
54 PF05496 RuvB_N: Holliday junc 97.4 0.0011 2.4E-08 73.0 10.9 134 1335-1502 30-174 (233)
55 TIGR00763 lon ATP-dependent pr 97.4 0.0027 5.8E-08 84.7 16.8 131 1352-1505 348-491 (775)
56 PRK07003 DNA polymerase III su 97.3 0.00099 2.2E-08 84.8 11.6 129 1349-1505 36-177 (830)
57 TIGR00635 ruvB Holliday juncti 97.3 0.0011 2.4E-08 78.6 11.6 119 1352-1505 31-158 (305)
58 PRK14958 DNA polymerase III su 97.3 0.00075 1.6E-08 85.0 10.5 134 1342-1505 29-177 (509)
59 PRK00080 ruvB Holliday junctio 97.3 0.0016 3.4E-08 78.2 12.6 81 891-978 108-195 (328)
60 PF05496 RuvB_N: Holliday junc 97.3 0.0012 2.6E-08 72.7 10.4 76 892-974 108-190 (233)
61 PRK00080 ruvB Holliday junctio 97.3 0.0013 2.8E-08 79.0 11.5 119 1352-1505 52-179 (328)
62 PTZ00454 26S protease regulato 97.3 0.00051 1.1E-08 83.8 7.9 45 933-978 284-331 (398)
63 PF12774 AAA_6: Hydrolytic ATP 97.3 0.0017 3.6E-08 73.4 11.4 123 1332-1489 13-145 (231)
64 PRK13342 recombination factor 97.3 0.0013 2.8E-08 81.4 11.6 45 934-978 121-166 (413)
65 PRK14957 DNA polymerase III su 97.2 0.0013 2.7E-08 83.0 11.1 128 1349-1506 36-178 (546)
66 PF13177 DNA_pol3_delta2: DNA 97.2 0.0016 3.4E-08 69.7 10.4 143 1336-1505 4-160 (162)
67 CHL00195 ycf46 Ycf46; Provisio 97.2 0.00046 1E-08 86.0 7.2 46 933-979 360-408 (489)
68 PRK14960 DNA polymerase III su 97.2 0.00092 2E-08 84.3 9.6 127 1347-1505 33-176 (702)
69 PLN03025 replication factor C 97.2 0.00096 2.1E-08 79.7 9.4 117 1352-1505 35-157 (319)
70 cd00009 AAA The AAA+ (ATPases 97.2 0.0023 4.9E-08 66.1 10.7 27 728-754 18-44 (151)
71 PRK14964 DNA polymerase III su 97.2 0.0014 3E-08 81.5 10.2 129 1344-1505 28-174 (491)
72 COG1222 RPT1 ATP-dependent 26S 97.2 0.001 2.2E-08 76.8 8.3 60 908-979 276-338 (406)
73 PRK03992 proteasome-activating 97.2 0.00082 1.8E-08 82.3 8.1 46 933-979 270-318 (389)
74 PF07724 AAA_2: AAA domain (Cd 97.2 0.00039 8.5E-09 74.9 4.7 40 731-770 5-45 (171)
75 CHL00176 ftsH cell division pr 97.1 0.001 2.2E-08 85.7 8.9 45 933-978 321-368 (638)
76 KOG0738|consensus 97.1 0.0011 2.3E-08 77.0 8.1 45 934-979 353-398 (491)
77 COG2256 MGS1 ATPase related to 97.1 0.0023 5.1E-08 75.1 10.9 42 933-974 132-174 (436)
78 PLN00020 ribulose bisphosphate 97.1 0.0005 1.1E-08 80.6 5.4 45 932-978 267-313 (413)
79 PRK14962 DNA polymerase III su 97.1 0.0025 5.4E-08 79.5 11.9 44 934-978 148-191 (472)
80 KOG0744|consensus 97.1 0.00085 1.8E-08 76.0 6.9 48 935-982 298-346 (423)
81 PRK14949 DNA polymerase III su 97.1 0.0021 4.5E-08 83.6 11.1 126 1349-1506 36-178 (944)
82 PRK06645 DNA polymerase III su 97.1 0.0021 4.5E-08 80.6 10.9 126 1350-1505 42-186 (507)
83 PRK08691 DNA polymerase III su 97.1 0.0014 3.1E-08 83.4 9.4 134 1349-1505 36-177 (709)
84 PRK10787 DNA-binding ATP-depen 97.1 0.0017 3.8E-08 85.6 10.7 83 891-977 422-507 (784)
85 TIGR00635 ruvB Holliday juncti 97.1 0.0039 8.4E-08 74.0 12.8 80 891-977 87-173 (305)
86 PRK12323 DNA polymerase III su 97.1 0.0017 3.8E-08 81.7 9.8 140 1337-1506 24-183 (700)
87 KOG0733|consensus 97.1 0.0012 2.7E-08 80.3 8.1 78 892-978 611-694 (802)
88 PHA02544 44 clamp loader, smal 97.1 0.0021 4.5E-08 76.7 10.2 112 1351-1505 43-159 (316)
89 PRK14951 DNA polymerase III su 97.1 0.0024 5.3E-08 81.5 11.0 140 1336-1505 23-182 (618)
90 PRK00149 dnaA chromosomal repl 97.0 0.0015 3.3E-08 81.7 9.2 44 935-978 247-295 (450)
91 TIGR02902 spore_lonB ATP-depen 97.0 0.0053 1.1E-07 78.1 13.8 47 932-978 232-278 (531)
92 PF00004 AAA: ATPase family as 97.0 0.0012 2.5E-08 67.5 6.4 23 732-754 1-23 (132)
93 PRK09862 putative ATP-dependen 97.0 0.0019 4.1E-08 80.6 9.0 75 888-968 297-393 (506)
94 PRK12402 replication factor C 97.0 0.0029 6.4E-08 76.1 10.6 127 1353-1506 38-184 (337)
95 PRK14963 DNA polymerase III su 97.0 0.0043 9.4E-08 78.0 12.1 126 1350-1505 35-174 (504)
96 PHA02544 44 clamp loader, smal 97.0 0.0051 1.1E-07 73.5 12.2 59 907-978 117-175 (316)
97 PRK06893 DNA replication initi 97.0 0.003 6.5E-08 71.7 9.7 42 936-977 129-175 (229)
98 PRK13407 bchI magnesium chelat 97.0 0.0012 2.7E-08 78.4 6.8 139 1352-1501 30-196 (334)
99 PRK14087 dnaA chromosomal repl 96.9 0.0038 8.3E-08 77.7 11.3 89 888-990 209-303 (450)
100 PRK14956 DNA polymerase III su 96.9 0.0014 3.1E-08 80.5 7.3 134 1350-1506 39-180 (484)
101 TIGR00362 DnaA chromosomal rep 96.9 0.0033 7.3E-08 77.7 10.6 43 936-978 236-283 (405)
102 PRK14958 DNA polymerase III su 96.9 0.027 5.8E-07 71.2 18.7 45 933-978 149-193 (509)
103 TIGR02639 ClpA ATP-dependent C 96.9 0.0039 8.4E-08 82.7 11.8 80 892-978 560-664 (731)
104 PTZ00112 origin recognition co 96.9 0.006 1.3E-07 78.2 12.6 90 888-993 872-965 (1164)
105 TIGR01242 26Sp45 26S proteasom 96.9 0.0022 4.8E-08 78.1 8.6 45 933-978 261-308 (364)
106 PRK10787 DNA-binding ATP-depen 96.9 0.02 4.3E-07 75.9 17.9 133 1352-1505 350-492 (784)
107 PRK04195 replication factor C 96.9 0.006 1.3E-07 77.1 12.6 112 1351-1506 39-160 (482)
108 PF00158 Sigma54_activat: Sigm 96.9 0.0081 1.8E-07 64.6 11.7 39 716-754 9-47 (168)
109 PRK14088 dnaA chromosomal repl 96.9 0.002 4.3E-08 80.1 8.1 44 935-978 230-278 (440)
110 PRK09111 DNA polymerase III su 96.9 0.0038 8.2E-08 79.9 10.7 141 1335-1505 30-190 (598)
111 CHL00181 cbbX CbbX; Provisiona 96.9 0.0023 5E-08 74.9 8.1 118 1353-1505 61-195 (287)
112 PRK14956 DNA polymerase III su 96.9 0.024 5.3E-07 69.9 17.1 45 933-978 151-195 (484)
113 PRK07003 DNA polymerase III su 96.9 0.038 8.1E-07 71.0 19.1 69 891-978 125-193 (830)
114 KOG0730|consensus 96.9 0.0017 3.7E-08 80.3 7.1 48 932-980 569-619 (693)
115 PRK07764 DNA polymerase III su 96.9 0.0023 5E-08 84.5 8.8 139 1345-1506 31-179 (824)
116 COG1223 Predicted ATPase (AAA+ 96.9 0.0087 1.9E-07 66.1 11.6 64 907-979 235-300 (368)
117 PRK05564 DNA polymerase III su 96.8 0.0029 6.4E-08 75.4 8.8 134 1338-1505 13-151 (313)
118 smart00350 MCM minichromosome 96.8 0.0024 5.3E-08 80.9 8.6 85 889-979 304-403 (509)
119 PRK08727 hypothetical protein; 96.8 0.0023 5.1E-08 72.7 7.6 39 938-976 132-175 (233)
120 PRK06871 DNA polymerase III su 96.8 0.0061 1.3E-07 72.2 11.1 140 1339-1506 12-166 (325)
121 PRK12402 replication factor C 96.8 0.01 2.2E-07 71.4 13.4 44 934-978 156-199 (337)
122 PRK14962 DNA polymerase III su 96.8 0.0022 4.9E-08 79.9 7.8 124 1351-1506 36-176 (472)
123 PRK13407 bchI magnesium chelat 96.8 0.0074 1.6E-07 71.9 11.7 80 889-974 132-214 (334)
124 PRK08699 DNA polymerase III su 96.8 0.0042 9.1E-08 73.9 9.6 136 1349-1506 19-172 (325)
125 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0076 1.6E-07 81.2 13.2 82 889-977 671-777 (852)
126 COG2256 MGS1 ATPase related to 96.8 0.0035 7.5E-08 73.8 8.5 120 1344-1505 39-162 (436)
127 PRK08691 DNA polymerase III su 96.8 0.024 5.2E-07 72.6 16.6 45 933-978 149-193 (709)
128 PRK07994 DNA polymerase III su 96.8 0.0042 9.1E-08 79.5 9.9 123 1349-1506 36-178 (647)
129 PRK14960 DNA polymerase III su 96.8 0.044 9.5E-07 69.7 18.6 45 933-978 148-192 (702)
130 PRK14964 DNA polymerase III su 96.8 0.037 8E-07 69.1 17.8 45 933-978 146-190 (491)
131 PF01078 Mg_chelatase: Magnesi 96.8 0.0011 2.4E-08 72.6 4.0 130 1338-1483 11-155 (206)
132 TIGR02030 BchI-ChlI magnesium 96.8 0.0029 6.2E-08 75.4 7.8 139 1351-1501 25-199 (337)
133 PRK09112 DNA polymerase III su 96.8 0.0036 7.8E-08 75.2 8.7 154 1338-1506 32-200 (351)
134 PRK04195 replication factor C 96.8 0.012 2.5E-07 74.5 13.7 43 935-978 132-175 (482)
135 PF07726 AAA_3: ATPase family 96.8 0.001 2.3E-08 66.8 3.4 103 1354-1486 2-111 (131)
136 TIGR02902 spore_lonB ATP-depen 96.8 0.0051 1.1E-07 78.3 10.4 142 1350-1505 85-262 (531)
137 PRK05896 DNA polymerase III su 96.8 0.0025 5.5E-08 80.4 7.5 125 1350-1506 37-178 (605)
138 PF05729 NACHT: NACHT domain 96.7 0.0034 7.4E-08 66.8 7.6 64 903-977 101-164 (166)
139 KOG0478|consensus 96.7 0.0075 1.6E-07 74.7 11.0 98 1122-1237 526-632 (804)
140 PRK05642 DNA replication initi 96.7 0.0012 2.6E-08 75.2 4.0 41 935-975 133-178 (234)
141 PTZ00361 26 proteosome regulat 96.7 0.0017 3.8E-08 79.8 5.6 46 933-979 322-370 (438)
142 PRK14086 dnaA chromosomal repl 96.7 0.01 2.2E-07 75.1 12.4 42 937-978 415-461 (617)
143 PRK14952 DNA polymerase III su 96.7 0.0076 1.7E-07 76.8 11.4 134 1349-1506 33-177 (584)
144 COG0542 clpA ATP-binding subun 96.7 0.0047 1E-07 79.5 9.4 84 888-978 596-707 (786)
145 PRK06090 DNA polymerase III su 96.7 0.0074 1.6E-07 71.3 10.3 142 1338-1506 12-167 (319)
146 COG3829 RocR Transcriptional r 96.7 0.014 3E-07 71.5 12.7 235 704-1048 243-491 (560)
147 PRK13341 recombination factor 96.7 0.0082 1.8E-07 78.5 11.7 44 934-977 138-182 (725)
148 PRK05563 DNA polymerase III su 96.7 0.0077 1.7E-07 77.0 11.3 127 1349-1505 36-177 (559)
149 PRK13531 regulatory ATPase Rav 96.7 0.0092 2E-07 73.3 11.3 34 721-754 31-64 (498)
150 PLN03025 replication factor C 96.7 0.0081 1.8E-07 71.8 10.8 44 934-978 130-173 (319)
151 PRK06964 DNA polymerase III su 96.7 0.0075 1.6E-07 71.9 10.2 146 1349-1506 19-191 (342)
152 PRK08903 DnaA regulatory inact 96.7 0.0065 1.4E-07 68.8 9.4 27 727-753 40-66 (227)
153 PRK06305 DNA polymerase III su 96.6 0.0032 6.9E-08 78.4 7.2 135 1350-1506 38-180 (451)
154 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0075 1.6E-07 80.7 11.1 83 889-978 672-782 (852)
155 TIGR02881 spore_V_K stage V sp 96.6 0.0035 7.5E-08 72.7 6.9 27 1352-1378 43-69 (261)
156 PRK06647 DNA polymerase III su 96.6 0.007 1.5E-07 77.1 10.1 134 1350-1505 37-177 (563)
157 COG0466 Lon ATP-dependent Lon 96.6 0.0074 1.6E-07 75.6 9.8 86 890-977 422-509 (782)
158 PRK11608 pspF phage shock prot 96.6 0.024 5.3E-07 67.8 14.0 45 708-752 8-52 (326)
159 PRK13531 regulatory ATPase Rav 96.6 0.005 1.1E-07 75.5 8.0 138 1344-1503 32-175 (498)
160 PRK10865 protein disaggregatio 96.6 0.0085 1.8E-07 80.4 10.9 84 889-979 674-782 (857)
161 TIGR00678 holB DNA polymerase 96.6 0.014 2.9E-07 64.2 10.8 133 1349-1506 12-155 (188)
162 COG0470 HolB ATPase involved i 96.6 0.0096 2.1E-07 71.2 10.4 131 1349-1505 22-167 (325)
163 TIGR01243 CDC48 AAA family ATP 96.5 0.0051 1.1E-07 81.8 8.6 45 932-977 589-636 (733)
164 PRK08451 DNA polymerase III su 96.5 0.0063 1.4E-07 76.4 8.8 125 1349-1506 34-176 (535)
165 TIGR02880 cbbX_cfxQ probable R 96.5 0.0054 1.2E-07 71.8 7.8 119 1352-1505 59-194 (284)
166 PRK14970 DNA polymerase III su 96.5 0.019 4E-07 70.2 12.5 124 1350-1505 38-166 (367)
167 PRK14954 DNA polymerase III su 96.5 0.011 2.4E-07 75.8 10.9 128 1349-1506 36-186 (620)
168 TIGR02903 spore_lon_C ATP-depe 96.4 0.015 3.2E-07 75.3 11.8 144 1351-1505 175-352 (615)
169 PRK14969 DNA polymerase III su 96.4 0.007 1.5E-07 76.9 8.6 138 1348-1506 35-178 (527)
170 PRK07133 DNA polymerase III su 96.4 0.0069 1.5E-07 78.1 8.5 132 1350-1506 39-177 (725)
171 PRK07471 DNA polymerase III su 96.4 0.012 2.7E-07 71.1 10.2 145 1341-1506 31-200 (365)
172 PRK09087 hypothetical protein; 96.4 0.023 4.9E-07 64.3 11.7 44 935-978 120-168 (226)
173 cd01131 PilT Pilus retraction 96.4 0.0092 2E-07 66.1 8.4 87 1353-1452 3-90 (198)
174 PRK08769 DNA polymerase III su 96.4 0.017 3.7E-07 68.4 11.0 143 1339-1506 14-172 (319)
175 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.0086 1.9E-07 67.7 8.3 28 726-753 35-62 (226)
176 TIGR00382 clpX endopeptidase C 96.4 0.0067 1.5E-07 74.0 7.8 114 1351-1487 116-247 (413)
177 PRK00440 rfc replication facto 96.4 0.023 5E-07 67.8 12.3 118 1352-1506 39-161 (319)
178 COG0464 SpoVK ATPases of the A 96.4 0.0096 2.1E-07 75.7 9.4 45 933-978 378-425 (494)
179 PRK14961 DNA polymerase III su 96.4 0.028 6E-07 68.4 12.9 45 933-978 149-193 (363)
180 PRK14950 DNA polymerase III su 96.4 0.015 3.2E-07 75.1 11.1 127 1350-1506 37-179 (585)
181 PF00308 Bac_DnaA: Bacterial d 96.4 0.0071 1.5E-07 68.1 7.2 44 936-979 134-182 (219)
182 CHL00206 ycf2 Ycf2; Provisiona 96.3 0.0094 2E-07 81.9 9.2 37 662-698 1632-1668(2281)
183 PRK08058 DNA polymerase III su 96.3 0.015 3.4E-07 69.6 10.4 141 1337-1506 14-169 (329)
184 KOG0726|consensus 96.3 0.0071 1.5E-07 67.6 6.7 75 888-974 281-367 (440)
185 PRK05707 DNA polymerase III su 96.3 0.013 2.8E-07 69.9 9.5 132 1348-1506 19-165 (328)
186 TIGR01817 nifA Nif-specific re 96.3 0.08 1.7E-06 68.0 17.4 64 705-768 195-258 (534)
187 PRK06645 DNA polymerase III su 96.3 0.029 6.4E-07 70.4 12.9 45 933-978 158-202 (507)
188 PRK14951 DNA polymerase III su 96.3 0.11 2.5E-06 66.6 18.4 45 933-978 154-198 (618)
189 PRK13342 recombination factor 96.3 0.014 3E-07 72.3 10.1 109 1352-1505 37-150 (413)
190 PRK14948 DNA polymerase III su 96.3 0.014 3.1E-07 75.2 10.4 127 1349-1505 36-179 (620)
191 TIGR00368 Mg chelatase-related 96.3 0.0091 2E-07 74.9 8.4 75 888-968 298-396 (499)
192 PRK10923 glnG nitrogen regulat 96.3 0.049 1.1E-06 68.9 15.2 229 707-1045 139-379 (469)
193 COG1474 CDC6 Cdc6-related prot 96.3 0.055 1.2E-06 65.5 14.7 189 716-997 27-225 (366)
194 PRK00440 rfc replication facto 96.2 0.044 9.5E-07 65.4 13.6 44 934-978 133-176 (319)
195 KOG2028|consensus 96.2 0.026 5.5E-07 65.2 10.6 43 933-975 250-293 (554)
196 PRK08118 topology modulation p 96.2 0.0037 7.9E-08 67.3 3.6 24 1353-1376 3-26 (167)
197 PRK13808 adenylate kinase; Pro 96.1 0.0077 1.7E-07 71.1 6.2 23 1354-1376 3-25 (333)
198 PRK07399 DNA polymerase III su 96.1 0.019 4.2E-07 68.1 9.5 158 1336-1506 11-182 (314)
199 TIGR00678 holB DNA polymerase 96.1 0.051 1.1E-06 59.6 12.3 42 933-975 126-167 (188)
200 CHL00095 clpC Clp protease ATP 96.1 0.017 3.6E-07 77.7 10.0 83 889-978 615-734 (821)
201 PRK14955 DNA polymerase III su 96.1 0.014 3E-07 71.9 8.6 127 1349-1505 36-185 (397)
202 TIGR02397 dnaX_nterm DNA polym 96.1 0.015 3.2E-07 70.6 8.8 125 1351-1505 36-175 (355)
203 TIGR02031 BchD-ChlD magnesium 96.1 0.0066 1.4E-07 78.1 5.9 125 1352-1500 17-153 (589)
204 TIGR02442 Cob-chelat-sub cobal 96.1 0.011 2.3E-07 77.1 7.8 139 1352-1501 26-194 (633)
205 KOG0734|consensus 96.1 0.0093 2E-07 71.8 6.5 44 933-979 439-487 (752)
206 COG0606 Predicted ATPase with 96.1 0.022 4.9E-07 68.9 9.7 49 889-943 287-336 (490)
207 PF00493 MCM: MCM2/3/5 family 96.1 0.006 1.3E-07 73.1 5.1 87 888-980 124-225 (331)
208 PRK14953 DNA polymerase III su 96.1 0.026 5.6E-07 70.9 10.8 138 1350-1506 37-178 (486)
209 PRK05917 DNA polymerase III su 96.1 0.034 7.5E-07 64.5 10.9 139 1340-1506 8-154 (290)
210 PRK14949 DNA polymerase III su 96.1 0.031 6.7E-07 73.1 11.5 45 933-978 149-193 (944)
211 PRK14957 DNA polymerase III su 96.0 0.041 9E-07 69.6 12.3 45 933-978 149-193 (546)
212 TIGR02974 phageshock_pspF psp 96.0 0.022 4.7E-07 68.2 9.5 126 1336-1484 7-141 (329)
213 PRK07993 DNA polymerase III su 96.0 0.021 4.6E-07 68.3 9.3 142 1338-1506 11-167 (334)
214 PRK11388 DNA-binding transcrip 96.0 0.015 3.3E-07 76.2 8.8 119 1343-1484 340-464 (638)
215 PRK14532 adenylate kinase; Pro 96.0 0.01 2.3E-07 65.1 6.1 24 1353-1376 2-25 (188)
216 TIGR02329 propionate_PrpR prop 96.0 0.018 4E-07 72.8 8.9 119 1346-1487 230-359 (526)
217 PRK06620 hypothetical protein; 96.0 0.015 3.2E-07 65.2 7.3 42 935-977 116-161 (214)
218 PRK14965 DNA polymerase III su 96.0 0.01 2.2E-07 76.3 6.7 124 1349-1505 36-177 (576)
219 TIGR02974 phageshock_pspF psp 95.9 0.15 3.2E-06 61.2 15.9 82 889-978 97-189 (329)
220 CHL00081 chlI Mg-protoporyphyr 95.9 0.01 2.2E-07 70.9 6.0 144 1352-1501 39-212 (350)
221 TIGR00764 lon_rel lon-related 95.9 0.17 3.7E-06 65.4 17.5 131 1122-1266 217-372 (608)
222 TIGR03015 pepcterm_ATPase puta 95.9 0.059 1.3E-06 62.7 12.2 50 707-756 20-70 (269)
223 PRK15424 propionate catabolism 95.9 0.023 5E-07 71.9 9.3 128 1346-1488 237-375 (538)
224 PF13173 AAA_14: AAA domain 95.9 0.032 6.9E-07 57.2 8.7 27 728-754 1-27 (128)
225 PRK14530 adenylate kinase; Pro 95.9 0.0088 1.9E-07 67.2 4.9 25 1352-1376 4-28 (215)
226 KOG0743|consensus 95.9 0.048 1E-06 65.5 11.0 41 937-978 342-385 (457)
227 COG2812 DnaX DNA polymerase II 95.8 0.012 2.7E-07 72.9 6.3 138 1343-1503 30-175 (515)
228 PRK14971 DNA polymerase III su 95.8 0.03 6.6E-07 72.2 10.1 130 1350-1506 38-180 (614)
229 PRK14959 DNA polymerase III su 95.8 0.012 2.7E-07 74.7 6.4 125 1350-1506 37-178 (624)
230 PF13207 AAA_17: AAA domain; P 95.8 0.006 1.3E-07 61.6 2.9 23 1354-1376 2-24 (121)
231 TIGR02329 propionate_PrpR prop 95.8 0.13 2.8E-06 65.3 15.2 65 705-769 211-275 (526)
232 TIGR01359 UMP_CMP_kin_fam UMP- 95.8 0.012 2.6E-07 64.2 5.2 23 1354-1376 2-24 (183)
233 CHL00081 chlI Mg-protoporyphyr 95.7 0.021 4.5E-07 68.3 7.4 81 889-975 148-231 (350)
234 TIGR00368 Mg chelatase-related 95.7 0.013 2.9E-07 73.4 6.2 141 1348-1502 208-386 (499)
235 smart00350 MCM minichromosome 95.7 0.052 1.1E-06 69.0 11.5 126 1352-1504 237-383 (509)
236 PRK14952 DNA polymerase III su 95.7 0.41 8.8E-06 61.4 19.2 45 933-978 148-192 (584)
237 PRK05342 clpX ATP-dependent pr 95.7 0.023 4.9E-07 69.8 7.8 114 1351-1487 108-239 (412)
238 PRK15429 formate hydrogenlyase 95.7 0.13 2.8E-06 68.1 15.5 61 707-767 377-437 (686)
239 PRK08084 DNA replication initi 95.7 0.023 5.1E-07 64.7 7.4 26 1352-1377 46-71 (235)
240 PRK06851 hypothetical protein; 95.7 0.015 3.2E-07 69.8 5.8 41 729-769 214-254 (367)
241 KOG0482|consensus 95.6 0.15 3.2E-06 61.5 13.7 245 1093-1350 407-708 (721)
242 PRK12323 DNA polymerase III su 95.6 0.046 9.9E-07 69.4 10.2 45 933-978 154-198 (700)
243 KOG2004|consensus 95.6 0.058 1.3E-06 67.6 10.7 112 890-1003 510-625 (906)
244 PTZ00111 DNA replication licen 95.6 0.039 8.4E-07 72.4 9.8 84 889-979 561-660 (915)
245 PF12780 AAA_8: P-loop contain 95.6 0.054 1.2E-06 62.7 10.0 151 1328-1505 7-196 (268)
246 PRK05342 clpX ATP-dependent pr 95.6 0.037 8E-07 68.0 9.1 25 729-753 108-132 (412)
247 PRK15424 propionate catabolism 95.6 0.18 3.9E-06 64.0 15.3 46 707-752 220-265 (538)
248 COG1419 FlhF Flagellar GTP-bin 95.6 0.023 4.9E-07 67.9 6.9 139 1351-1500 203-394 (407)
249 TIGR01360 aden_kin_iso1 adenyl 95.6 0.014 3E-07 63.9 4.8 25 1352-1376 4-28 (188)
250 PTZ00088 adenylate kinase 1; P 95.6 0.014 3E-07 66.0 4.9 23 1354-1376 9-31 (229)
251 PRK09111 DNA polymerase III su 95.6 0.46 9.9E-06 61.3 19.1 45 933-978 162-206 (598)
252 PRK05022 anaerobic nitric oxid 95.5 0.28 6.2E-06 62.5 17.3 57 713-769 194-250 (509)
253 KOG0727|consensus 95.5 0.028 6E-07 61.7 6.8 27 726-752 186-212 (408)
254 KOG0742|consensus 95.5 0.2 4.3E-06 58.9 13.9 82 674-755 303-410 (630)
255 COG0593 DnaA ATPase involved i 95.5 0.092 2E-06 63.6 11.9 39 936-974 212-255 (408)
256 TIGR02030 BchI-ChlI magnesium 95.5 0.13 2.7E-06 61.7 13.0 80 889-974 135-217 (337)
257 PRK14526 adenylate kinase; Pro 95.5 0.026 5.6E-07 63.1 6.8 23 1354-1376 3-25 (211)
258 COG1219 ClpX ATP-dependent pro 95.5 0.013 2.8E-07 66.8 4.1 58 1351-1429 97-154 (408)
259 PRK07994 DNA polymerase III su 95.5 0.088 1.9E-06 67.8 12.2 68 891-977 125-192 (647)
260 TIGR03574 selen_PSTK L-seryl-t 95.5 0.0092 2E-07 68.7 3.2 24 1354-1377 2-25 (249)
261 KOG0989|consensus 95.4 0.011 2.5E-07 67.1 3.5 56 1436-1505 129-187 (346)
262 PRK08451 DNA polymerase III su 95.4 0.16 3.6E-06 64.0 14.1 44 933-977 147-190 (535)
263 TIGR01351 adk adenylate kinase 95.4 0.024 5.1E-07 63.5 6.1 23 1354-1376 2-24 (210)
264 PF05673 DUF815: Protein of un 95.4 0.09 2E-06 59.1 10.4 31 728-758 51-81 (249)
265 PRK11388 DNA-binding transcrip 95.4 0.13 2.9E-06 67.5 14.0 40 714-753 333-372 (638)
266 PRK05818 DNA polymerase III su 95.4 0.049 1.1E-06 62.0 8.5 129 1348-1506 4-147 (261)
267 PRK14969 DNA polymerase III su 95.4 0.11 2.3E-06 66.2 12.5 44 933-977 149-192 (527)
268 COG2255 RuvB Holliday junction 95.4 0.037 8E-07 62.5 7.2 82 888-976 106-194 (332)
269 PRK06893 DNA replication initi 95.4 0.039 8.5E-07 62.6 7.7 27 1351-1377 39-65 (229)
270 PF13173 AAA_14: AAA domain 95.3 0.031 6.7E-07 57.3 6.2 85 1351-1461 2-87 (128)
271 PRK03992 proteasome-activating 95.3 0.036 7.8E-07 68.0 7.8 26 1351-1376 165-190 (389)
272 PRK06217 hypothetical protein; 95.3 0.015 3.3E-07 63.5 4.1 24 1353-1376 3-26 (183)
273 PRK07261 topology modulation p 95.3 0.026 5.6E-07 61.0 5.7 23 1354-1376 3-25 (171)
274 PRK11608 pspF phage shock prot 95.3 0.054 1.2E-06 64.9 9.0 124 1335-1484 13-148 (326)
275 PRK14963 DNA polymerase III su 95.3 0.15 3.3E-06 64.4 13.3 45 933-978 146-190 (504)
276 PRK05022 anaerobic nitric oxid 95.2 0.05 1.1E-06 69.3 8.9 119 1343-1484 202-329 (509)
277 PRK10820 DNA-binding transcrip 95.2 0.53 1.1E-05 60.2 18.1 65 705-769 203-267 (520)
278 PRK07133 DNA polymerase III su 95.2 0.14 3E-06 66.4 12.7 43 934-977 149-191 (725)
279 KOG0991|consensus 95.2 0.037 8E-07 60.4 6.3 30 731-760 50-79 (333)
280 PRK08181 transposase; Validate 95.2 0.046 1E-06 63.3 7.7 30 724-753 101-130 (269)
281 PRK09862 putative ATP-dependen 95.2 0.046 1E-06 68.5 8.1 144 1348-1505 207-387 (506)
282 COG3829 RocR Transcriptional r 95.2 0.036 7.7E-07 68.1 6.8 121 1343-1484 260-388 (560)
283 PRK14527 adenylate kinase; Pro 95.2 0.034 7.4E-07 61.2 6.3 25 1352-1376 7-31 (191)
284 TIGR02397 dnaX_nterm DNA polym 95.2 0.12 2.7E-06 62.7 11.7 45 933-978 147-191 (355)
285 KOG0731|consensus 95.1 0.043 9.4E-07 70.4 7.7 38 661-698 345-382 (774)
286 PRK10820 DNA-binding transcrip 95.1 0.058 1.2E-06 68.8 9.0 118 1344-1484 220-346 (520)
287 PRK08233 hypothetical protein; 95.1 0.021 4.5E-07 62.1 4.3 25 1352-1376 4-28 (182)
288 TIGR02903 spore_lon_C ATP-depe 95.0 0.099 2.2E-06 67.8 10.8 46 933-978 323-368 (615)
289 PRK07764 DNA polymerase III su 95.0 1 2.3E-05 60.1 20.3 45 933-978 150-194 (824)
290 COG4088 Predicted nucleotide k 95.0 0.021 4.5E-07 61.4 3.7 25 1353-1377 3-27 (261)
291 TIGR00041 DTMP_kinase thymidyl 95.0 0.049 1.1E-06 60.0 6.9 26 1352-1377 4-29 (195)
292 PRK00279 adk adenylate kinase; 94.9 0.039 8.4E-07 62.0 5.9 23 1354-1376 3-25 (215)
293 smart00382 AAA ATPases associa 94.9 0.014 2.9E-07 59.6 2.1 27 1351-1377 2-28 (148)
294 TIGR02031 BchD-ChlD magnesium 94.9 0.15 3.2E-06 65.9 11.9 82 889-976 88-174 (589)
295 PRK05896 DNA polymerase III su 94.9 0.15 3.3E-06 64.8 11.6 45 933-978 149-193 (605)
296 CHL00195 ycf46 Ycf46; Provisio 94.9 0.26 5.6E-06 61.9 13.5 27 1350-1376 258-284 (489)
297 PRK05563 DNA polymerase III su 94.9 0.12 2.5E-06 66.4 10.7 45 933-978 149-193 (559)
298 PRK13900 type IV secretion sys 94.8 0.071 1.5E-06 63.8 8.2 32 1345-1376 154-185 (332)
299 KOG0741|consensus 94.8 0.053 1.1E-06 65.5 6.8 53 1316-1377 228-282 (744)
300 TIGR00382 clpX endopeptidase C 94.8 0.076 1.6E-06 65.0 8.4 24 730-753 117-140 (413)
301 PTZ00112 origin recognition co 94.8 0.086 1.9E-06 68.2 8.9 86 1353-1444 783-877 (1164)
302 PF04665 Pox_A32: Poxvirus A32 94.8 0.34 7.4E-06 54.9 12.8 32 723-754 7-38 (241)
303 PRK14529 adenylate kinase; Pro 94.8 0.038 8.3E-07 62.0 5.3 24 1354-1377 3-26 (223)
304 COG1221 PspF Transcriptional r 94.7 0.055 1.2E-06 65.3 6.8 145 1336-1502 86-243 (403)
305 PF13671 AAA_33: AAA domain; P 94.7 0.017 3.6E-07 60.1 2.2 23 1354-1376 2-24 (143)
306 PF12780 AAA_8: P-loop contain 94.7 0.19 4.2E-06 58.1 11.0 72 931-1007 159-236 (268)
307 TIGR01420 pilT_fam pilus retra 94.7 0.12 2.5E-06 62.5 9.6 26 1351-1376 122-147 (343)
308 KOG0737|consensus 94.6 0.037 7.9E-07 64.8 4.8 59 640-698 107-165 (386)
309 KOG0745|consensus 94.6 0.026 5.5E-07 66.8 3.5 87 1351-1459 226-315 (564)
310 COG2204 AtoC Response regulato 94.6 0.098 2.1E-06 64.3 8.7 120 1344-1484 157-283 (464)
311 TIGR01817 nifA Nif-specific re 94.6 0.11 2.4E-06 66.8 9.7 118 1344-1484 212-338 (534)
312 PRK06526 transposase; Provisio 94.6 0.035 7.6E-07 63.9 4.6 86 1350-1459 97-186 (254)
313 PRK08116 hypothetical protein; 94.6 0.046 9.9E-07 63.5 5.6 27 728-754 113-139 (268)
314 COG1239 ChlI Mg-chelatase subu 94.5 0.37 8.1E-06 57.9 13.0 75 890-970 149-225 (423)
315 COG0466 Lon ATP-dependent Lon 94.5 0.23 5E-06 62.8 11.5 128 1353-1504 352-493 (782)
316 KOG1051|consensus 94.5 0.078 1.7E-06 69.6 7.8 107 1353-1478 593-703 (898)
317 PRK14722 flhF flagellar biosyn 94.5 0.11 2.3E-06 62.8 8.5 106 1349-1468 135-255 (374)
318 PRK13341 recombination factor 94.4 0.1 2.2E-06 68.6 8.8 25 1352-1376 53-77 (725)
319 PTZ00454 26S protease regulato 94.4 0.052 1.1E-06 66.5 5.8 26 1351-1376 179-204 (398)
320 PF12775 AAA_7: P-loop contain 94.4 0.22 4.7E-06 58.0 10.7 94 1166-1260 142-250 (272)
321 PRK08181 transposase; Validate 94.4 0.078 1.7E-06 61.4 6.9 87 1350-1460 105-195 (269)
322 PRK06762 hypothetical protein; 94.4 0.029 6.3E-07 60.1 3.2 24 1352-1375 3-26 (166)
323 smart00763 AAA_PrkA PrkA AAA d 94.4 0.059 1.3E-06 64.2 5.9 29 1350-1378 77-105 (361)
324 PLN02842 nucleotide kinase 94.4 0.064 1.4E-06 66.6 6.5 22 1355-1376 1-22 (505)
325 TIGR02915 PEP_resp_reg putativ 94.4 0.63 1.4E-05 58.4 15.6 121 908-1045 250-380 (445)
326 PRK15429 formate hydrogenlyase 94.4 0.16 3.6E-06 67.2 10.7 119 1343-1484 391-518 (686)
327 TIGR02442 Cob-chelat-sub cobal 94.3 0.43 9.3E-06 62.4 14.3 80 889-974 130-212 (633)
328 TIGR02524 dot_icm_DotB Dot/Icm 94.3 0.092 2E-06 63.4 7.4 28 1350-1377 133-160 (358)
329 cd03115 SRP The signal recogni 94.3 0.063 1.4E-06 58.0 5.5 25 1353-1377 2-26 (173)
330 COG1116 TauB ABC-type nitrate/ 94.3 0.026 5.6E-07 63.2 2.5 27 1350-1376 28-54 (248)
331 PLN00020 ribulose bisphosphate 94.2 0.037 8E-07 65.4 3.8 148 1329-1500 119-293 (413)
332 PRK14953 DNA polymerase III su 94.2 0.39 8.4E-06 60.6 13.1 44 934-978 150-193 (486)
333 PLN02459 probable adenylate ki 94.2 0.082 1.8E-06 60.5 6.4 99 1353-1459 31-132 (261)
334 PF13238 AAA_18: AAA domain; P 94.2 0.034 7.3E-07 56.4 3.1 22 1354-1375 1-22 (129)
335 PF03215 Rad17: Rad17 cell cyc 94.2 0.045 9.8E-07 69.0 4.7 25 1352-1376 46-70 (519)
336 COG3839 MalK ABC-type sugar tr 94.2 0.027 5.8E-07 66.6 2.5 24 1352-1375 30-53 (338)
337 cd01129 PulE-GspE PulE/GspE Th 94.2 0.2 4.3E-06 58.2 9.6 33 1344-1376 72-105 (264)
338 PRK05642 DNA replication initi 94.1 0.062 1.3E-06 61.2 5.3 25 1352-1376 46-70 (234)
339 KOG2028|consensus 94.1 0.14 3.1E-06 59.3 8.0 115 1352-1506 163-281 (554)
340 KOG0744|consensus 94.1 0.033 7.1E-07 63.7 2.8 29 1348-1376 174-202 (423)
341 PRK13833 conjugal transfer pro 94.0 0.046 9.9E-07 64.8 4.1 33 1344-1376 137-169 (323)
342 PF10662 PduV-EutP: Ethanolami 94.0 0.03 6.6E-07 57.9 2.3 21 1353-1373 3-23 (143)
343 PF06414 Zeta_toxin: Zeta toxi 94.0 0.016 3.6E-07 64.2 0.3 86 1350-1458 14-115 (199)
344 COG0606 Predicted ATPase with 94.0 0.077 1.7E-06 64.4 5.9 131 1338-1484 187-333 (490)
345 COG1126 GlnQ ABC-type polar am 94.0 0.031 6.8E-07 60.9 2.4 24 1349-1372 26-49 (240)
346 PRK14959 DNA polymerase III su 94.0 0.34 7.3E-06 62.0 11.9 45 933-978 149-193 (624)
347 PRK06835 DNA replication prote 94.0 0.063 1.4E-06 64.0 5.2 33 721-753 175-207 (329)
348 PRK14970 DNA polymerase III su 94.0 0.51 1.1E-05 57.6 13.2 44 934-978 139-182 (367)
349 COG1222 RPT1 ATP-dependent 26S 93.9 0.08 1.7E-06 61.7 5.6 125 1343-1495 175-308 (406)
350 TIGR02928 orc1/cdc6 family rep 93.9 0.44 9.5E-06 58.1 12.6 46 1352-1402 41-86 (365)
351 PLN02674 adenylate kinase 93.9 0.11 2.4E-06 59.1 6.8 99 1352-1458 32-131 (244)
352 TIGR02782 TrbB_P P-type conjug 93.9 0.051 1.1E-06 64.1 4.2 33 1344-1376 125-157 (299)
353 cd02019 NK Nucleoside/nucleoti 93.9 0.047 1E-06 49.4 3.0 22 1354-1375 2-23 (69)
354 TIGR00150 HI0065_YjeE ATPase, 93.8 0.068 1.5E-06 54.9 4.4 36 1342-1377 13-48 (133)
355 cd01130 VirB11-like_ATPase Typ 93.8 0.049 1.1E-06 59.7 3.6 33 1344-1376 18-50 (186)
356 PRK06526 transposase; Provisio 93.7 0.049 1.1E-06 62.6 3.6 28 726-753 95-122 (254)
357 PRK14965 DNA polymerase III su 93.7 0.37 8E-06 62.2 11.8 45 933-978 149-193 (576)
358 KOG0652|consensus 93.7 0.2 4.4E-06 55.4 7.9 34 719-752 195-228 (424)
359 PRK05703 flhF flagellar biosyn 93.7 0.15 3.1E-06 63.2 7.7 95 1351-1459 221-326 (424)
360 PRK12723 flagellar biosynthesi 93.6 0.47 1E-05 57.8 11.8 26 1352-1377 175-200 (388)
361 CHL00176 ftsH cell division pr 93.6 0.12 2.5E-06 67.1 7.0 123 1350-1506 215-353 (638)
362 PRK06305 DNA polymerase III su 93.6 0.47 1E-05 59.4 12.1 45 933-978 151-195 (451)
363 COG3604 FhlA Transcriptional r 93.6 0.18 4E-06 61.3 8.0 122 1342-1484 237-365 (550)
364 COG4525 TauB ABC-type taurine 93.6 0.043 9.4E-07 58.6 2.4 29 1348-1376 28-56 (259)
365 TIGR00064 ftsY signal recognit 93.5 0.32 6.8E-06 56.7 9.8 27 1351-1377 72-98 (272)
366 PF13555 AAA_29: P-loop contai 93.5 0.063 1.4E-06 47.2 3.0 24 1353-1376 25-48 (62)
367 PRK03839 putative kinase; Prov 93.5 0.046 1E-06 59.5 2.7 24 1353-1376 2-25 (180)
368 KOG0991|consensus 93.5 0.067 1.5E-06 58.4 3.7 27 1349-1375 46-72 (333)
369 TIGR02525 plasmid_TraJ plasmid 93.4 0.13 2.9E-06 62.2 6.7 28 1350-1377 148-175 (372)
370 TIGR02788 VirB11 P-type DNA tr 93.4 0.17 3.8E-06 60.1 7.6 103 1344-1465 137-248 (308)
371 KOG0727|consensus 93.4 0.11 2.5E-06 57.1 5.3 33 1343-1375 179-213 (408)
372 cd00820 PEPCK_HprK Phosphoenol 93.4 0.053 1.2E-06 53.4 2.6 22 1351-1372 15-36 (107)
373 COG3842 PotA ABC-type spermidi 93.4 0.039 8.4E-07 65.7 2.0 26 1350-1375 28-55 (352)
374 PF13245 AAA_19: Part of AAA d 93.4 0.087 1.9E-06 48.7 3.8 24 1352-1375 11-35 (76)
375 PRK10078 ribose 1,5-bisphospho 93.4 0.046 1E-06 59.9 2.4 25 1352-1376 3-27 (186)
376 TIGR00362 DnaA chromosomal rep 93.3 0.087 1.9E-06 65.2 5.0 27 1351-1377 136-162 (405)
377 PRK06647 DNA polymerase III su 93.3 0.66 1.4E-05 59.5 12.9 44 933-977 149-192 (563)
378 PRK13851 type IV secretion sys 93.3 0.054 1.2E-06 64.8 3.1 32 1345-1376 156-187 (344)
379 KOG1970|consensus 93.3 0.12 2.7E-06 63.1 6.0 45 1352-1409 111-155 (634)
380 KOG0740|consensus 93.3 0.39 8.4E-06 58.4 10.2 46 933-979 290-336 (428)
381 PF13401 AAA_22: AAA domain; P 93.3 0.064 1.4E-06 54.8 3.2 28 1350-1377 3-30 (131)
382 KOG0739|consensus 93.3 0.14 3E-06 57.9 5.9 45 933-978 269-314 (439)
383 COG1241 MCM2 Predicted ATPase 93.3 0.082 1.8E-06 67.8 4.7 145 731-979 321-486 (682)
384 COG1136 SalX ABC-type antimicr 93.3 0.05 1.1E-06 60.7 2.5 25 1350-1374 30-54 (226)
385 TIGR02322 phosphon_PhnN phosph 93.2 0.051 1.1E-06 59.1 2.5 24 1353-1376 3-26 (179)
386 cd01428 ADK Adenylate kinase ( 93.2 0.16 3.4E-06 55.9 6.4 23 1354-1376 2-24 (194)
387 PRK10536 hypothetical protein; 93.2 0.14 3.1E-06 58.2 6.0 146 1347-1508 70-248 (262)
388 TIGR01241 FtsH_fam ATP-depende 93.2 0.14 2.9E-06 65.2 6.6 26 1350-1375 87-112 (495)
389 KOG1534|consensus 93.2 0.075 1.6E-06 57.3 3.4 30 1351-1380 3-32 (273)
390 PRK14088 dnaA chromosomal repl 93.2 0.067 1.4E-06 66.7 3.7 123 1352-1507 131-264 (440)
391 PF01695 IstB_IS21: IstB-like 93.1 0.065 1.4E-06 58.3 3.1 88 1349-1460 45-136 (178)
392 KOG1533|consensus 93.1 0.081 1.8E-06 58.0 3.7 29 1352-1380 3-31 (290)
393 PRK14948 DNA polymerase III su 93.1 0.86 1.9E-05 59.2 13.6 44 933-977 151-194 (620)
394 PRK12726 flagellar biosynthesi 93.1 0.19 4.1E-06 60.2 7.0 97 1350-1460 205-313 (407)
395 PRK13894 conjugal transfer ATP 93.0 0.085 1.8E-06 62.7 4.1 32 1344-1375 141-172 (319)
396 PRK00131 aroK shikimate kinase 93.0 0.058 1.3E-06 58.0 2.5 26 1351-1376 4-29 (175)
397 cd00464 SK Shikimate kinase (S 93.0 0.064 1.4E-06 56.5 2.7 24 1353-1376 1-24 (154)
398 PRK00091 miaA tRNA delta(2)-is 93.0 0.076 1.7E-06 62.6 3.6 25 1352-1376 5-29 (307)
399 PRK14950 DNA polymerase III su 93.0 0.77 1.7E-05 59.5 13.0 44 934-978 151-194 (585)
400 TIGR01313 therm_gnt_kin carboh 92.9 0.05 1.1E-06 58.1 1.9 23 1354-1376 1-23 (163)
401 PRK13851 type IV secretion sys 92.9 0.084 1.8E-06 63.3 3.9 39 717-755 150-188 (344)
402 cd00071 GMPK Guanosine monopho 92.9 0.064 1.4E-06 55.7 2.6 22 1354-1375 2-23 (137)
403 COG1221 PspF Transcriptional r 92.9 0.19 4.2E-06 60.7 6.9 70 889-966 177-252 (403)
404 PHA02624 large T antigen; Prov 92.9 0.34 7.3E-06 61.1 9.1 60 1317-1376 395-456 (647)
405 PRK13764 ATPase; Provisional 92.9 0.24 5.3E-06 63.2 8.0 29 1349-1377 255-283 (602)
406 PF03029 ATP_bind_1: Conserved 92.8 0.079 1.7E-06 60.4 3.3 38 1356-1402 1-38 (238)
407 PRK14531 adenylate kinase; Pro 92.8 0.076 1.6E-06 58.1 3.0 25 1352-1376 3-27 (183)
408 PF01637 Arch_ATPase: Archaeal 92.8 0.55 1.2E-05 52.8 10.2 81 888-978 121-206 (234)
409 PRK07940 DNA polymerase III su 92.7 0.72 1.6E-05 56.5 11.7 37 935-973 150-186 (394)
410 COG1239 ChlI Mg-chelatase subu 92.7 0.19 4.1E-06 60.3 6.4 138 1352-1500 39-211 (423)
411 PRK07132 DNA polymerase III su 92.7 0.64 1.4E-05 54.7 10.7 128 1349-1506 16-149 (299)
412 TIGR03015 pepcterm_ATPase puta 92.7 0.13 2.9E-06 59.7 5.1 33 1344-1376 35-68 (269)
413 COG0563 Adk Adenylate kinase a 92.6 0.076 1.7E-06 57.6 2.7 24 1353-1376 2-25 (178)
414 PF01580 FtsK_SpoIIIE: FtsK/Sp 92.6 0.17 3.7E-06 56.3 5.6 51 1351-1408 38-88 (205)
415 PF13604 AAA_30: AAA domain; P 92.6 0.19 4.1E-06 55.6 5.9 94 1351-1468 18-129 (196)
416 PF03193 DUF258: Protein of un 92.6 0.12 2.7E-06 54.7 4.1 31 1343-1374 28-58 (161)
417 PF08477 Miro: Miro-like prote 92.6 0.083 1.8E-06 52.9 2.8 22 1354-1375 2-23 (119)
418 COG1117 PstB ABC-type phosphat 92.6 0.078 1.7E-06 57.7 2.6 27 1349-1375 31-57 (253)
419 PRK12724 flagellar biosynthesi 92.5 0.79 1.7E-05 55.9 11.4 25 1352-1376 224-248 (432)
420 TIGR00390 hslU ATP-dependent p 92.5 0.11 2.3E-06 63.0 4.0 25 1352-1376 48-72 (441)
421 PRK12727 flagellar biosynthesi 92.5 0.36 7.7E-06 60.3 8.6 109 1349-1469 348-468 (559)
422 PRK02496 adk adenylate kinase; 92.5 0.08 1.7E-06 57.9 2.7 23 1354-1376 4-26 (184)
423 COG2204 AtoC Response regulato 92.5 1.3 2.8E-05 54.8 13.3 172 712-978 147-331 (464)
424 PF04665 Pox_A32: Poxvirus A32 92.5 0.65 1.4E-05 52.6 10.0 125 1353-1502 15-153 (241)
425 PF03215 Rad17: Rad17 cell cyc 92.5 0.48 1.1E-05 59.9 9.9 33 664-696 49-81 (519)
426 PRK13949 shikimate kinase; Pro 92.5 0.081 1.8E-06 57.0 2.7 24 1353-1376 3-26 (169)
427 PF14532 Sigma54_activ_2: Sigm 92.5 0.11 2.3E-06 54.0 3.5 38 1337-1374 7-44 (138)
428 TIGR00602 rad24 checkpoint pro 92.4 0.72 1.6E-05 59.6 11.4 32 947-978 256-289 (637)
429 PF07693 KAP_NTPase: KAP famil 92.4 0.26 5.6E-06 59.0 7.2 249 727-1033 18-318 (325)
430 smart00382 AAA ATPases associa 92.4 0.08 1.7E-06 53.8 2.4 28 729-756 2-29 (148)
431 PF00910 RNA_helicase: RNA hel 92.4 0.096 2.1E-06 51.9 2.9 24 1354-1377 1-24 (107)
432 KOG0743|consensus 92.3 0.064 1.4E-06 64.5 1.8 26 1351-1376 235-260 (457)
433 PRK13900 type IV secretion sys 92.3 0.12 2.6E-06 61.8 4.2 38 718-755 149-186 (332)
434 PRK11889 flhF flagellar biosyn 92.3 0.2 4.4E-06 60.2 5.9 105 1352-1467 242-359 (436)
435 PF00448 SRP54: SRP54-type pro 92.3 0.11 2.4E-06 57.4 3.5 27 1352-1378 2-28 (196)
436 PRK00149 dnaA chromosomal repl 92.3 0.11 2.3E-06 65.4 3.8 123 1351-1507 148-281 (450)
437 PF00931 NB-ARC: NB-ARC domain 92.3 0.41 8.9E-06 56.1 8.6 93 1350-1453 18-118 (287)
438 PRK13695 putative NTPase; Prov 92.2 0.45 9.7E-06 51.5 8.1 23 1354-1376 3-25 (174)
439 PF00625 Guanylate_kin: Guanyl 92.2 0.1 2.2E-06 57.0 3.2 26 1351-1376 2-27 (183)
440 PRK13947 shikimate kinase; Pro 92.2 0.091 2E-06 56.6 2.7 24 1353-1376 3-26 (171)
441 PRK08116 hypothetical protein; 92.2 0.12 2.5E-06 60.2 3.6 27 1351-1377 114-140 (268)
442 PRK07276 DNA polymerase III su 92.1 0.66 1.4E-05 54.2 9.8 137 1338-1505 11-162 (290)
443 COG3604 FhlA Transcriptional r 92.1 0.92 2E-05 55.5 11.0 80 706-790 223-302 (550)
444 cd02020 CMPK Cytidine monophos 92.1 0.097 2.1E-06 54.5 2.7 23 1354-1376 2-24 (147)
445 PF02367 UPF0079: Uncharacteri 92.1 0.12 2.7E-06 52.3 3.2 35 1343-1377 7-41 (123)
446 cd01130 VirB11-like_ATPase Typ 92.0 0.14 3.1E-06 56.0 4.0 38 717-754 13-50 (186)
447 PRK14738 gmk guanylate kinase; 92.0 0.06 1.3E-06 60.1 1.0 25 1350-1374 12-36 (206)
448 PRK11361 acetoacetate metaboli 92.0 2 4.3E-05 54.1 14.8 37 717-753 154-190 (457)
449 PF05729 NACHT: NACHT domain 91.9 0.13 2.9E-06 54.4 3.6 26 1352-1377 1-26 (166)
450 KOG0480|consensus 91.9 0.55 1.2E-05 58.6 8.9 126 1122-1267 442-576 (764)
451 TIGR01448 recD_rel helicase, p 91.9 1.1 2.5E-05 59.3 12.8 115 1327-1466 318-449 (720)
452 PHA02774 E1; Provisional 91.9 0.39 8.5E-06 60.2 7.9 89 1337-1466 420-511 (613)
453 PRK10436 hypothetical protein; 91.9 0.51 1.1E-05 58.9 9.0 31 1346-1376 212-243 (462)
454 PF01926 MMR_HSR1: 50S ribosom 91.8 0.11 2.3E-06 52.1 2.5 20 1354-1373 2-21 (116)
455 PF00437 T2SE: Type II/IV secr 91.8 0.1 2.3E-06 60.8 2.8 32 1344-1375 120-151 (270)
456 cd02021 GntK Gluconate kinase 91.8 0.096 2.1E-06 55.1 2.3 23 1354-1376 2-24 (150)
457 PF01443 Viral_helicase1: Vira 91.8 0.2 4.3E-06 56.8 5.1 22 1354-1375 1-22 (234)
458 PRK14955 DNA polymerase III su 91.8 0.72 1.6E-05 56.9 10.2 43 934-977 158-200 (397)
459 PF13191 AAA_16: AAA ATPase do 91.8 0.14 3E-06 55.6 3.6 27 1351-1377 24-50 (185)
460 PRK00625 shikimate kinase; Pro 91.8 0.11 2.4E-06 56.2 2.7 24 1353-1376 2-25 (173)
461 PF03193 DUF258: Protein of un 91.7 0.36 7.8E-06 51.3 6.4 53 679-752 6-58 (161)
462 PRK06547 hypothetical protein; 91.7 0.11 2.4E-06 56.1 2.6 26 1351-1376 15-40 (172)
463 PF08433 KTI12: Chromatin asso 91.7 0.083 1.8E-06 61.2 1.8 25 1353-1377 3-27 (270)
464 COG4619 ABC-type uncharacteriz 91.6 0.11 2.5E-06 54.2 2.4 26 1350-1375 28-53 (223)
465 PRK15115 response regulator Gl 91.6 2.6 5.7E-05 52.8 15.2 114 909-1045 246-375 (444)
466 PRK00300 gmk guanylate kinase; 91.6 0.097 2.1E-06 58.2 2.1 27 1350-1376 4-30 (205)
467 TIGR03689 pup_AAA proteasome A 91.6 0.11 2.3E-06 65.3 2.7 28 1350-1377 215-242 (512)
468 KOG0735|consensus 91.6 0.63 1.4E-05 58.6 9.1 28 726-753 698-725 (952)
469 PRK14528 adenylate kinase; Pro 91.6 0.12 2.6E-06 56.7 2.7 24 1353-1376 3-26 (186)
470 TIGR03263 guanyl_kin guanylate 91.5 0.11 2.5E-06 56.3 2.6 24 1352-1375 2-25 (180)
471 PF00406 ADK: Adenylate kinase 91.5 0.11 2.4E-06 54.7 2.4 84 1356-1458 1-96 (151)
472 PF13401 AAA_22: AAA domain; P 91.5 0.1 2.2E-06 53.2 2.1 58 727-784 2-64 (131)
473 cd00227 CPT Chloramphenicol (C 91.5 0.13 2.8E-06 55.8 2.9 25 1352-1376 3-27 (175)
474 PRK10416 signal recognition pa 91.5 0.45 9.8E-06 56.6 7.7 27 1351-1377 114-140 (318)
475 TIGR01618 phage_P_loop phage n 91.5 0.34 7.3E-06 54.4 6.2 22 1351-1372 12-33 (220)
476 TIGR00150 HI0065_YjeE ATPase, 91.5 0.22 4.7E-06 51.2 4.3 42 714-755 7-48 (133)
477 PF09439 SRPRB: Signal recogni 91.5 0.13 2.9E-06 55.6 2.9 123 1350-1496 2-133 (181)
478 TIGR01818 ntrC nitrogen regula 91.5 4.6 9.9E-05 51.0 17.2 114 909-1039 246-369 (463)
479 COG1125 OpuBA ABC-type proline 91.4 0.12 2.5E-06 57.8 2.4 26 1350-1375 26-51 (309)
480 cd02023 UMPK Uridine monophosp 91.4 0.13 2.9E-06 56.9 2.9 22 1354-1375 2-23 (198)
481 TIGR01242 26Sp45 26S proteasom 91.4 0.11 2.4E-06 63.4 2.5 26 1351-1376 156-181 (364)
482 PRK08903 DnaA regulatory inact 91.4 0.22 4.8E-06 56.4 4.8 27 1350-1376 41-67 (227)
483 PRK00411 cdc6 cell division co 91.4 0.68 1.5E-05 57.1 9.4 42 1352-1402 56-97 (394)
484 PRK05541 adenylylsulfate kinas 91.4 0.12 2.5E-06 56.1 2.4 29 1349-1377 5-33 (176)
485 TIGR01447 recD exodeoxyribonuc 91.3 1.9 4.2E-05 55.6 13.6 105 1351-1466 160-292 (586)
486 COG1102 Cmk Cytidylate kinase 91.3 0.13 2.9E-06 53.5 2.6 24 1354-1377 3-26 (179)
487 PRK05480 uridine/cytidine kina 91.3 0.14 2.9E-06 57.3 2.9 25 1351-1375 6-30 (209)
488 PLN02165 adenylate isopentenyl 91.2 0.17 3.6E-06 59.9 3.6 24 1353-1376 45-68 (334)
489 PRK15455 PrkA family serine pr 91.1 0.55 1.2E-05 59.0 8.0 29 1350-1378 102-130 (644)
490 cd02027 APSK Adenosine 5'-phos 91.1 0.16 3.4E-06 53.6 3.0 23 1354-1376 2-24 (149)
491 COG0703 AroK Shikimate kinase 91.1 0.14 3.1E-06 54.6 2.6 26 1352-1377 3-28 (172)
492 PLN02200 adenylate kinase fami 91.1 0.14 3E-06 58.3 2.7 25 1352-1376 44-68 (234)
493 PRK04040 adenylate kinase; Pro 91.1 0.15 3.3E-06 55.9 3.0 24 1353-1376 4-27 (188)
494 TIGR02915 PEP_resp_reg putativ 91.0 0.61 1.3E-05 58.6 8.7 113 1346-1484 157-281 (445)
495 TIGR00235 udk uridine kinase. 91.0 0.15 3.2E-06 56.9 2.8 25 1352-1376 7-31 (207)
496 PRK05057 aroK shikimate kinase 91.0 0.13 2.8E-06 55.6 2.3 26 1351-1376 4-29 (172)
497 PRK14737 gmk guanylate kinase; 91.0 0.14 3.1E-06 56.0 2.6 24 1352-1375 5-28 (186)
498 PRK09270 nucleoside triphospha 90.9 0.25 5.4E-06 56.1 4.6 28 1351-1378 33-60 (229)
499 PF00005 ABC_tran: ABC transpo 90.9 0.13 2.7E-06 53.1 2.0 26 1351-1376 11-36 (137)
500 PF00485 PRK: Phosphoribulokin 90.9 0.16 3.5E-06 56.1 2.9 24 1354-1377 2-25 (194)
No 1
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=1.1e-75 Score=718.86 Aligned_cols=405 Identities=44% Similarity=0.825 Sum_probs=324.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q psy4730 95 ETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLES 174 (1513)
Q Consensus 95 ~~L~~l~~el~~~~~lW~~~~~w~~~~~~w~~~pf~~ld~~~i~~~l~~~~~~l~~l~k~l~~~~~~~~v~~~l~~~I~~ 174 (1513)
++|+++.+++++++.+|.++.+|....+.|+++||.++|+++++++++.+.+.+.++.+.+++++ ++..+++.|++
T Consensus 1 ~~L~~l~~~l~~~~~lW~~~~~~~~~~~~w~~~~~~~ld~~~l~~~v~~~~~~l~~l~~~~~~~~----v~~~l~~~i~~ 76 (408)
T PF08393_consen 1 EELEELEKELEPLKKLWSLISEWQEQLEEWMNTPFSDLDVEELEEEVEEFLKQLRKLPKSLREWP----VYKELKKKIEE 76 (408)
T ss_dssp --------------------------HHHHHH--TTT---------------------------------HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcCHHHHHHHHHHHHHHHHHhhHHhhhhH----HHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999998755 89999999999
Q ss_pred HHhhhHHHHHhcCCcccHHhHHHHHHHhC-CCcCCCccccHHHHHhhchhhhhhHHHHHHHHhHhHHHHHHHHHHHHHhh
Q psy4730 175 FRKEVPILQCISNPGMEERHWKILSDELG-QDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEW 253 (1513)
Q Consensus 175 f~~~lpll~~L~np~lk~RHW~~I~~~lg-~~~~~~~~~TL~~Ll~l~l~~~~~~I~~I~~~A~~E~~iE~~L~~I~~~W 253 (1513)
|+.++|+|+.|+||+|++|||++|++++| .++ +++++||++|+++|+.+|.+.|.+|+.+|++|+.||++|++|++.|
T Consensus 77 f~~~lpli~~L~~~~mk~rHW~~l~~~~g~~~~-~~~~~tL~~Ll~~~l~~~~~~I~~I~~~A~~E~~ie~~L~~i~~~W 155 (408)
T PF08393_consen 77 FKKYLPLIQDLRNPAMKPRHWKQLFQILGIQDF-PNESLTLQDLLDLGLLDHEDKIEEISEQAQKEYKIEQSLEKIKEEW 155 (408)
T ss_dssp HHHHTHHHHHTTSTT--CHHHHHHHHCTT------TTS-SHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcHHHHHhcCccchHHHHHHHHHHhccccc-ccccccHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 788 7789999999999999999999999999999999999999999999
Q ss_pred cccEEEeEEeccCCceeecChHHHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4730 254 SDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEP 333 (1513)
Q Consensus 254 ~~~~f~~~~~~~~~~~il~~~dei~~~Led~l~~L~~m~~S~~~~~~~~~i~~we~kL~~~~~iL~~w~~vQ~~W~yL~~ 333 (1513)
++++|++.+|+++++++|++++++++.|+||+++|++|++|||+++|++++.+|+++|.+++++|+.|..||++|+||+|
T Consensus 156 ~~~~f~~~~~~~~~~~il~~~~~i~~~led~~~~L~~m~~S~~~~~~~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~ 235 (408)
T PF08393_consen 156 KNMEFEFVPYKDKDVFILKNWDEIIQQLEDHLLTLQSMKSSPFVKPFRDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEP 235 (408)
T ss_dssp CC-B-EEEEETTT-CEEEE-CHHHHHHHHHHHHHHHHTCSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhceeeeeccccchhheecchHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHhhhCHHHHHhHHhhHHHHHHHHHHhhcCCceeeecccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Q psy4730 334 IFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFF 413 (1513)
Q Consensus 334 iF~s~di~~~Lp~e~~~F~~v~~~~~~i~~~~~~~~~v~~~~~~~~l~~~L~~~~~~Le~I~k~L~~yLe~KR~~FPRfy 413 (1513)
||+++||+++||.|+++|..|++.|+.+|+.+.++|+|+++|..+++.+.|+++++.|+.|+|+|.+|||+||..|||||
T Consensus 236 if~~~di~~~lp~e~~~F~~i~~~~~~i~~~~~~~~~v~~~~~~~~~~~~l~~~~~~l~~i~k~L~~~Le~kR~~FPRfy 315 (408)
T PF08393_consen 236 IFSSSDIKKQLPKEAKKFSSIDKEWRSIMKRAQKDPNVLSVCSNPDLLEKLESINESLEKIQKSLNDYLESKREAFPRFY 315 (408)
T ss_dssp HTTSCCHCCCTHHHHHHHHHHHHHHHHHHHHHHCT-CCHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred HhcchhHHHHHHHHHHHHHHcChHHHHHHHHHHhCcchhHHhhHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccee
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhcCCCcchHHHHHHHHhhcccceeccc-ceeEEEeeecCCcEEEccCcccCCCCCCcHHHHHHHHHHHH
Q psy4730 414 FLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSD-SLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLM 492 (1513)
Q Consensus 414 FLSd~eLL~ils~~~dp~~i~~~l~k~F~gI~~l~~~~-~~~I~g~~s~~GE~l~l~~~I~~~~~~g~ve~WL~~le~~m 492 (1513)
||||+|||+|||+++||..+++|++||||||+++.|++ +..|+||+|.+||+++|.+||.+ .|+||.||++||++|
T Consensus 316 Flsd~eLl~ils~~~~~~~i~~~l~k~F~~i~~l~~~~~~~~i~~~~s~~gE~~~l~~~v~~---~~~ve~WL~~le~~m 392 (408)
T PF08393_consen 316 FLSDDELLEILSQSKDPEQIQPHLKKCFPGIKSLEFDENNNSITGMISAEGETLPLDKPVSI---EGPVEEWLNELEEEM 392 (408)
T ss_dssp HC-HHHHHHHHHTTTTCHHHHHHHHHCCSSEEEEEE-TTSSEEEEEEETTS-EEEEEEEEES---SS-HHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccchhhhhhhcCCCCCeEEeCCcccC---CCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975 45799999999999999998764 689999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy4730 493 IKSLQDICMMALGAY 507 (1513)
Q Consensus 493 k~sL~~~i~~~~~~~ 507 (1513)
+.||+..++.|+.+|
T Consensus 393 ~~tl~~~~~~~~~~y 407 (408)
T PF08393_consen 393 KSTLKKQIRKCLEDY 407 (408)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999987
No 2
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=1e-59 Score=522.80 Aligned_cols=148 Identities=66% Similarity=1.014 Sum_probs=127.1
Q ss_pred CCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCCCCCCCCCchhHHhhhhccc
Q psy4730 1122 PGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVA 1201 (1513)
Q Consensus 1122 ~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~y~gr~~LP~nLk~lFR~v~ 1201 (1513)
+|+|+|||||||++.+|||+++|++..|+.+++.+...+.++|++|.++|++++|+||||+|+||++||+|||++||||+
T Consensus 84 ~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpva 163 (231)
T PF12774_consen 84 SGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVA 163 (231)
T ss_dssp HT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE
T ss_pred cCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhhhhhCC
Q psy4730 1202 MMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYP 1269 (1513)
Q Consensus 1202 ~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l~~~~~ 1269 (1513)
|+.||+.+|+|++|++.||.+|+.||+|++.+|++|++++|+|.|||||||++|+||+.|+++||..|
T Consensus 164 m~~PD~~~I~ei~L~s~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~kr~~p 231 (231)
T PF12774_consen 164 MMVPDLSLIAEILLLSQGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSLKRGDP 231 (231)
T ss_dssp --S--HHHHHHHHHHCCCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHHHT---
T ss_pred EeCCCHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999865
No 3
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=1.1e-59 Score=537.94 Aligned_cols=268 Identities=43% Similarity=0.778 Sum_probs=233.7
Q ss_pred CCCCCCCCccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHH
Q psy4730 698 TFPPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEM 777 (1513)
Q Consensus 698 ~f~~~~~~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~ 777 (1513)
+|.|+.++++++|||.|++|+.++++.++++++||||+||+|||||+++++++++++.+.+....++||+.|+++.+|++
T Consensus 2 ~~~~~~~~~~~~VpT~dt~r~~~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ 81 (272)
T PF12775_consen 2 EYDPEMPFNEILVPTVDTVRYSYLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKI 81 (272)
T ss_dssp -----------T---HHHHHHHHHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHC
T ss_pred CcccccccceEEeCcHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHH
Confidence 36788899999999999999999999999999999999999999999999999999888888889999999999999999
Q ss_pred HHHHhhhhccCCCCCCCCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCCh
Q psy4730 778 IMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDR 857 (1513)
Q Consensus 778 i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (1513)
+++++++|+|++|||+.|+++|+|+
T Consensus 82 ie~~l~k~~~~~~gP~~~k~lv~fi------------------------------------------------------- 106 (272)
T PF12775_consen 82 IESKLEKRRGRVYGPPGGKKLVLFI------------------------------------------------------- 106 (272)
T ss_dssp CCTTECECTTEEEEEESSSEEEEEE-------------------------------------------------------
T ss_pred HhhcEEcCCCCCCCCCCCcEEEEEe-------------------------------------------------------
Confidence 9999999999999999999999998
Q ss_pred hHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEE
Q psy4730 858 DELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYI 937 (1513)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~ 937 (1513)
||+|||.+|+||+|||+|+|||++|||||||+++++|+.++|++++
T Consensus 107 ----------------------------------DDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~v 152 (272)
T PF12775_consen 107 ----------------------------------DDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFV 152 (272)
T ss_dssp ----------------------------------ETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEE
T ss_pred ----------------------------------cccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEE
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred EeecCC--CCCCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhc-cchhHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy4730 938 TAMIPT--MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSK-GFADSIVKLSKNIVAATFHVYSESTKVFLPIP 1014 (1513)
Q Consensus 938 ~a~~~~--~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1513)
|||+|+ |+.|++||+|||+++++++|+.++|.+||++++.+++.. +|.+++..++.+|++||+++|+++.+.|+|+|
T Consensus 153 aa~~p~~Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp 232 (272)
T PF12775_consen 153 AAMNPTGGRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTP 232 (272)
T ss_dssp EEESSTTT--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTT
T ss_pred EecCCCCCCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCC
Confidence 999997 889999999999999999999999999999999999864 79999999999999999999999999999999
Q ss_pred CCCccccchhhHHHHHhhhcccCCcccCChhhHHHhhhhh
Q psy4730 1015 SKSHYVFNLRDFAKVIMGLTQLPASHCKAPDKMYKLWTHE 1054 (1513)
Q Consensus 1015 ~~~hy~fnlrd~~~~~~g~~~~~~~~~~~~~~~~rl~~hE 1054 (1513)
.++||+|||||++||+||++++.++++.+..+|+|||.||
T Consensus 233 ~k~HY~FnlRDlsrv~qGil~~~~~~~~~~~~l~rLW~HE 272 (272)
T PF12775_consen 233 SKPHYTFNLRDLSRVFQGILLASPESIKTKESLLRLWVHE 272 (272)
T ss_dssp TCTTTTSHHHHHHHHHHHHHHHHCTSSS-SHHHHHHHHHH
T ss_pred ccceeeccHHHHHHHHHHHHhcChhhcCCHHHheEeecCC
Confidence 9999999999999999999999999999999999999999
No 4
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.6e-56 Score=544.39 Aligned_cols=1039 Identities=15% Similarity=0.121 Sum_probs=751.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q psy4730 94 YETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLE 173 (1513)
Q Consensus 94 f~~L~~l~~el~~~~~lW~~~~~w~~~~~~w~~~pf~~ld~~~i~~~l~~~~~~l~~l~k~l~~~~~~~~v~~~l~~~I~ 173 (1513)
..++....++-+.+.-+|+.+..-++.......+||- |.+.....+..+.+ ...+.+..+ .. .+..+=..++
T Consensus 427 ~~~~~~~v~~~k~~~~v~~~~~~~~e~i~~~~~t~~~--d~~~~~~~la~~l~-~~e~~r~vk-~~----~~~~~fs~~n 498 (3164)
T COG5245 427 DAKVRSGVSFGKQEEFVSDIFNITFERIHGMDPTTLE--DDEEDTPALAILLG-QEEAGRFVK-LC----KIMRMFSFFN 498 (3164)
T ss_pred HHHHHhHhhhhhHHHHHHHHHHHHHHHhhcCCCCcch--hhhhcCHHHHHHhc-chhhhhHHH-HH----HHHHHHHHHH
Confidence 3567777788889999999999988888999999998 55555555544443 222222211 00 1112222223
Q ss_pred HHHhhhHHHHHhcCCcccHHhHHHHHHHhCCCcCCC-----ccccHHHHHhhchhhhhhHHHHHHHHhHhHHHHHHHHHH
Q psy4730 174 SFRKEVPILQCISNPGMEERHWKILSDELGQDITPN-----DQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNK 248 (1513)
Q Consensus 174 ~f~~~lpll~~L~np~lk~RHW~~I~~~lg~~~~~~-----~~~TL~~Ll~l~l~~~~~~I~~I~~~A~~E~~iE~~L~~ 248 (1513)
.+...-..+.+++..++| ||..++. +|.-+-.. -.+.|.+..-++..+..-.+--+.+.|+ .++.++..
T Consensus 499 ~l~~~~~~~~~~~~~~~k--~~~~v~r-~g~~~lq~~~~~~~~~~l~~~~~~~~~~~~l~l~~~~e~s~---iv~~s~~r 572 (3164)
T COG5245 499 SLEMFSRRTLANRMAIVK--YLSSVVR-TGPLFLQRDFFGRMSELLMARDMFMEVDGVLRLFFGGEWSG---IVQLSGIR 572 (3164)
T ss_pred HHHHHHHHHHHhHHHHHH--HHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhHHH---HHHHhhhH
Confidence 333333455677777777 9999999 77532221 1234444444444455555566667776 88999999
Q ss_pred HHHhhcccEEEeEEeccCCceeecChHHHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4730 249 MVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTW 328 (1513)
Q Consensus 249 I~~~W~~~~f~~~~~~~~~~~il~~~dei~~~Led~l~~L~~m~~S~~~~~~~~~i~~we~kL~~~~~iL~~w~~vQ~~W 328 (1513)
+...|...+.+ |++..-|.+.+..+-.|+.+.+ |+.. .+.+.+|....++-= -.|
T Consensus 573 ~~k~~~e~q~~---------------~~irewc~~~l~~~~~~~~a~~---~e~~-~d~~~~l~~~s~~~v------~~~ 627 (3164)
T COG5245 573 RAKRCVERQID---------------DEIREWCSSVLSDDFLEERAVR---VERG-ADGARRLRASSGSPV------LRR 627 (3164)
T ss_pred HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH---HHcC-ccHHHHHHhccCCcH------HHH
Confidence 99999876553 5666667777777778888777 4444 556667766654321 578
Q ss_pred HhhhccC-CchhHhhhCHHHHHhHHhhHHHHHHHHHHhhcCCceeeecccchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4730 329 MYLEPIF-SSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRL 407 (1513)
Q Consensus 329 ~yL~~iF-~s~di~~~Lp~e~~~F~~v~~~~~~i~~~~~~~~~v~~~~~~~~l~~~L~~~~~~Le~I~k~L~~yLe~KR~ 407 (1513)
+.++.+. +.+|++..+|.+..+|.+..+.+|.|.+++..-...+.....|. .+.|.-..+.++.|..++..+|+.+|.
T Consensus 628 ld~y~~~~~~~dl~~~ip~~~~~~~sl~s~~~~i~~r~~~~~~~i~~i~~~~-~d~l~l~~~~~~~v~~si~~~l~~~~r 706 (3164)
T COG5245 628 LDEYLMMMSLEDLMPLIPHAVHRKMSLVSGVRGIYKRVVSGCEAINTILEDV-GDDLDLFYKEMDQVFMSIEKVLGLRWR 706 (3164)
T ss_pred HHHHHHHhhhhhhcccccHHHHHHHHHHhhhhhhhhhhhcccchhheeeccC-CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888 58899999999999999999999999999876665555555443 445888889999999999999999999
Q ss_pred cCCcccccChHHHHHHHhcCCCcchHHHHHHHHhhcccceecccceeEEEeeecCCcEEEccCcccCCCCCCcHHHHHHH
Q psy4730 408 FFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQ 487 (1513)
Q Consensus 408 ~FPRfyFLSd~eLL~ils~~~dp~~i~~~l~k~F~gI~~l~~~~~~~I~g~~s~~GE~l~l~~~I~~~~~~g~ve~WL~~ 487 (1513)
.||| |+.++||+.+++..++-..+.+++.|.|..+....+-.+ .|+|.-+-+||...+...+... .+..+..|++
T Consensus 707 ~~~r--~~~~~~l~~~v~~~~~~~~~~~f~~k~~~~~e~~~~~~~-~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~in- 781 (3164)
T COG5245 707 EVER--ASEVEELMDRVRELENRVYSYRFFVKKIAKEEMKTVFSS-RIQKKEPFSLDSEAYVGFFRLY-EKSIVIRGIN- 781 (3164)
T ss_pred hhhh--hcchHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHH-HhccCCCccchHHhhhhhhhhH-HHHHHHHHhh-
Confidence 9999 899999999999999999999999999998887766554 6999999999998888876643 3457899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-hhhhhhcCCchhhhhhhhhhhcHHHHHHHhhccHHHHHHHHHHHHHHHHHHHhcC
Q psy4730 488 VEDLMIKSLQDICMMALGAYYKSE-RVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGK 566 (1513)
Q Consensus 488 le~~mk~sL~~~i~~~~~~~~~~~-~~~Wi~~~p~Qv~ll~~qI~wT~~ve~al~~~~l~~~~~~~~~~l~~l~~~~r~~ 566 (1513)
+.|- ++-.+.++|++...... -+-.+..|-.|...+..+ .||.-+|.||+. .+..|...+...+. .-.+.
T Consensus 782 --~s~~-~v~sq~~~~~~~~~~~~d~~~~vs~~~~~~~~l~~~-~~~~~~e~c~~~-~~s~y~~~~~~~~~----~~~~~ 852 (3164)
T COG5245 782 --RSMG-RVLSQYLESVQEALEIEDGSFFVSRHRVRDGGLEKG-RGCDAWENCFDP-PLSEYFRILEKIFP----SEEGY 852 (3164)
T ss_pred --hHHH-HHHHHHHHHHHHHhcCCcceEEEeeeehhhcccccc-cchHHHHHhcCc-hHHHHHHHHHHhcc----ccccc
Confidence 3343 66777777777664433 344567888999999989 999999999986 56665543322221 11111
Q ss_pred CChHHHHHHHHHHHHHhcchHHHHHHHHcccCCcccchhhhhcceEeec-CeEEEEEcceEEEeeeeccCCccceeeccc
Q psy4730 567 LLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVN-NLVNVCMITTTVQYGYEYLGNSDRLVITPL 645 (1513)
Q Consensus 567 l~~~~r~ki~~LI~~~vh~rDiv~~L~~~~v~~~~~f~W~~qlRyy~~~-~~i~v~~~~~~~~YgyEY~G~~~rlV~Tpl 645 (1513)
.......++.++..+..|.-+|+..+....-....-.-|.+.-++|-.- +.+.+.+-+....|-|||.|.|.+++.||+
T Consensus 853 ~~d~v~k~l~~~~~~~~~~~~ii~~~~~~~~~~~~~l~~~~i~~~~q~l~~~~~~~~s~y~~~~~f~~~~ip~~~~~~~~ 932 (3164)
T COG5245 853 FFDEVLKRLDPGHEIKSRIEEIIRMVTVKYDFCLEVLGSVSISELPQGLYKRFIKVRSSYRSAEMFAKNTIPFFVFEHSM 932 (3164)
T ss_pred chHHHHHhcCchhhHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhheEeechhhHHHHHHHhcCCChhheechh
Confidence 2233455688888888898888888755433334455688877766321 246667777788999999999999999999
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEE------------------------------------
Q psy4730 646 TDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCI------------------------------------ 689 (1513)
Q Consensus 646 t~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~------------------------------------ 689 (1513)
--.-+.+++.|++...+-. +|||||++++.++..+||-+=
T Consensus 933 ~~~~~~~l~~a~~~~~c~f----~~t~~s~~~~~~~~~~gri~d~~~~~sri~~g~~~~~~~g~~e~~~lde~~~~i~~~ 1008 (3164)
T COG5245 933 DTSQHQKLFEAVCDEVCRF----VDTENSRVYGMLVAGKGRIYDGTEPRSRIEAGPICEEERGTEESALLDEISRTILVD 1008 (3164)
T ss_pred hhhhHHHHHHHHHHHHhee----cCCCCceeHHHHhcCCCeeecCCChhhhhhccceehhhccchhHHHHHHHHHHHhhh
Confidence 8888999999998776433 688888888888876666220
Q ss_pred --------------------------------------------------------------------------------
Q psy4730 690 -------------------------------------------------------------------------------- 689 (1513)
Q Consensus 690 -------------------------------------------------------------------------------- 689 (1513)
T Consensus 1009 ~~~~~~~~~~~~~~~s~~~e~~~~sp~t~v~~~in~r~~~~e~~~~a~~~f~~~~p~g~i~~~~~sl~~~i~~f~~~~~~ 1088 (3164)
T COG5245 1009 EYLNSDEFRMLEELNSAVVEHGLKSPSTPVEMIINERNIVLEIGRRALDMFLSNIPFGAIKSRRESLDREIGAFNNEVDG 1088 (3164)
T ss_pred HHhcchHHHHHHHHHHHHHHcCCCCCCCceEEEecchhhHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred ----------------EEEcCCC-------------------------------------------------------CC
Q psy4730 690 ----------------VFNCSDR-------------------------------------------------------PT 698 (1513)
Q Consensus 690 ----------------v~ncs~~-------------------------------------------------------~~ 698 (1513)
.-||+.. ++
T Consensus 1089 ~~~~~~~~~f~~~~~~l~~~~~~l~e~~e~~~~i~~~~~lp~i~dtl~e~~~~~da~~~~~~~~s~~~~~~~s~q~sg~~ 1168 (3164)
T COG5245 1089 IAREEDELMFYPMFKSLKAKHRMLEEKTEYLNKILSITGLPLISDTLRERIDTLDAEWDSFCRISESLKKYESQQVSGLD 1168 (3164)
T ss_pred hhcccchhhhHHHHHHHhhcchHHHHhhHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHhhccccCcc
Confidence 0000000 00
Q ss_pred --------------------------------------------------------------------------------
Q psy4730 699 -------------------------------------------------------------------------------- 698 (1513)
Q Consensus 699 -------------------------------------------------------------------------------- 698 (1513)
T Consensus 1169 ~a~f~~f~~~~~t~~~~~~~~~~~~~k~~~~~~~~d~~~h~~~~yv~~~~~~a~~e~r~~f~~~~r~d~~~~~~~s~~~~ 1248 (3164)
T COG5245 1169 VAQFVSFLRSVDTGAFHAEYFRVFLCKIKHYTDACDYLWHVKSPYVKKKYFDADMELRQFFLMFNREDMEARLADSKMEY 1248 (3164)
T ss_pred HHHHHHHHHHhhhcHHHHHHHHHhhcccchhhhhhccccccCchhhHHHHhhhhHHHHHHHHHHhHHhhhhhhccceEEE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy4730 699 -------------------------------------------------------------------------------- 698 (1513)
Q Consensus 699 -------------------------------------------------------------------------------- 698 (1513)
T Consensus 1249 ~~~~yve~~~a~~~~~kl~~~~~ge~~v~~~nl~s~~~~v~rc~~~~ds~~~~St~~~~~~~lg~T~~~Ld~~ld~fs~~ 1328 (3164)
T COG5245 1249 EVERYVEKTKAEVSSLKLELSSVGEGQVVVSNLGSIGDKVGRCLVEYDSISRLSTKGVFLDELGDTKRYLDECLDFFSCF 1328 (3164)
T ss_pred ehHHHHHHHHhhhccceeeeccCCCceEEEeeCCCccchhheeeeeecccchhccchhhHHhhccchhhhhhhhhhhhHH
Confidence
Q ss_pred ---------------------------------C----------------------------------------------
Q psy4730 699 ---------------------------------F---------------------------------------------- 699 (1513)
Q Consensus 699 ---------------------------------f---------------------------------------------- 699 (1513)
|
T Consensus 1329 ~~~~~~~de~~m~~~a~~~~fs~dl~hI~~~rrF~~~~~~~~~s~~l~~~s~~~~~~L~~K~l~~~mk~~I~~vL~~~~~ 1408 (3164)
T COG5245 1329 EEVQKEIDELSMVFCADALRFSADLYHIVKERRFSGVLAGSDASESLGGKSIELAAILEHKDLIVEMKRGINDVLKLRIF 1408 (3164)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhhhHhHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence 0
Q ss_pred -------CC----------------------------C--------------------C-CCccccccchhhhhHHHHHH
Q psy4730 700 -------PP----------------------------N--------------------L-RPSDLIIPTNVTCMQNFFIN 723 (1513)
Q Consensus 700 -------~~----------------------------~--------------------~-~~~~~~v~t~~~~~~~~~~~ 723 (1513)
.| + . ..-++++||.+|.++..+++
T Consensus 1409 gD~~~es~~rf~~~~~~~~~~dl~e~sdye~~~i~~f~is~~~~~~~~Iag~~l~~~~vm~~~~vVipt~dt~~~~~f~n 1488 (3164)
T COG5245 1409 GDKCRESTPRFYLISDGDLIKDLNERSDYEEMLIMMFNISAVITNNGSIAGFELRGERVMLRKEVVIPTSDTGFVDSFSN 1488 (3164)
T ss_pred cCcccccchhHHHhhhhhhhhccchhhhhHHHHHhhcccceEeecccccCCceechhhhcccCCeecccccchhHHHHHH
Confidence 00 0 0 01367999999999999999
Q ss_pred HHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhhcc-C---CCCCCCCceEE
Q psy4730 724 LYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRK-G---VYGPAMGKKYI 799 (1513)
Q Consensus 724 ~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~~-~---~~~~~~~~~~~ 799 (1513)
-++..++.+++|||||+|||+++...+++... +....+|||-.|+.......++...+.-+. | .|-.+.-|.+|
T Consensus 1489 ~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~--~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1489 EALNTLRSYIYCGPPGSGKEMLMCPSLRSELI--TEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred HHHhccceEEEECCCCCccchhcchhhhhhhh--eeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 99999999999999999999999988876432 566789999999888777777654433221 1 11111223333
Q ss_pred EEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHHHHHhhhcccchhHH
Q psy4730 800 VFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWY 879 (1513)
Q Consensus 800 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (1513)
T Consensus 1567 -------------------------------------------------------------------------------- 1566 (3164)
T COG5245 1567 -------------------------------------------------------------------------------- 1566 (3164)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC----CCCCChhhhccc
Q psy4730 880 IEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT----MNTITGRLLRHM 955 (1513)
Q Consensus 880 ~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~----~~~~~~r~~~~f 955 (1513)
+|+|++|||..++||+|.++-+||+++++.|||.+-..+|+.|.++.++|||||+ |++.+.||+||=
T Consensus 1567 ---------LFcDeInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~ 1637 (3164)
T COG5245 1567 ---------LFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP 1637 (3164)
T ss_pred ---------EEeeccCCccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc
Confidence 4569999999999999999999999999999999999999999999999999997 899999999999
Q ss_pred eEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhhcc
Q psy4730 956 NIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQ 1035 (1513)
Q Consensus 956 ~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~~~ 1035 (1513)
.++++.+|+.++|.+||..+|.+.+.. .++.+.+...++.|++++|..+..+..- --+.||.|.+|||+||..|+.-
T Consensus 1638 v~vf~~ype~~SL~~Iyea~l~~s~l~--~~ef~~~se~~~~aSv~ly~~~k~~~k~-~lq~~y~y~pReLtR~lr~i~~ 1714 (3164)
T COG5245 1638 VFVFCCYPELASLRNIYEAVLMGSYLC--FDEFNRLSEETMSASVELYLSSKDKTKF-FLQMNYGYKPRELTRSLRAIFG 1714 (3164)
T ss_pred eEEEecCcchhhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcccccccChHHHHHHHHHHHh
Confidence 999999999999999999988766532 3567789999999999999988776543 4678999999999999999998
Q ss_pred cCCcccC-ChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHhhccccCcccchhhcccceeccc
Q psy4730 1036 LPASHCK-APDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNF 1114 (1513)
Q Consensus 1036 ~~~~~~~-~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~f 1114 (1513)
+..+... +..+++++|+||++|+|.|||+...++.|+.+.+.+...++++.-
T Consensus 1715 yaeT~~~t~~~slI~~wy~ea~r~~~dRLV~qkE~st~~q~ly~~~~~~~~e~--------------------------- 1767 (3164)
T COG5245 1715 YAETRIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDFGLRAIREM--------------------------- 1767 (3164)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhh---------------------------
Confidence 8777776 466999999999999999999999999998766665444333210
Q ss_pred cccccccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCCCCCCCCCchhHH
Q psy4730 1115 LGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLK 1194 (1513)
Q Consensus 1115 v~~~~~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~y~gr~~LP~nLk 1194 (1513)
.+ |-.|-
T Consensus 1768 -----------------------~~------------------------------------------g~i~e-------- 1774 (3164)
T COG5245 1768 -----------------------IA------------------------------------------GHIGE-------- 1774 (3164)
T ss_pred -----------------------hh------------------------------------------cccch--------
Confidence 00 00000
Q ss_pred hhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhhhhhCCCChHH
Q psy4730 1195 VLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEF 1274 (1513)
Q Consensus 1195 ~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l~~~~~~~~E~ 1274 (1513)
..|.-.+++..|| .
T Consensus 1775 -------------~~I~fS~Il~~g~-------------------------------~---------------------- 1788 (3164)
T COG5245 1775 -------------AEITFSMILFFGM-------------------------------A---------------------- 1788 (3164)
T ss_pred -------------hhhhHHHHHhccH-------------------------------H----------------------
Confidence 0111122222222 1
Q ss_pred HHHHHHHHhhcCCCCcccchhhHHHHhhccCCCCCCCCCCchHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHhc-ce
Q psy4730 1275 VIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVR-HG 1353 (1513)
Q Consensus 1275 ~~l~~ai~~~~~pkl~~~d~~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~-~g 1353 (1513)
.+...|...|-+-....|..-.+. ..+...+..+..++...+.+.+- .-
T Consensus 1789 -------------~l~k~dl~~fvEe~~K~F~sshl~-----------------v~~V~~~~~l~HiLr~~R~l~~vggh 1838 (3164)
T COG5245 1789 -------------CLLKKDLAVFVEEVRKIFGSSHLD-----------------VEAVAYKDALLHILRSRRGLLVVGGH 1838 (3164)
T ss_pred -------------HHhhhhHHHHHHHHHHHhcccCCC-----------------CceeeeHHHHHHHHHHHHHHHHhccc
Confidence 112222333333333334321110 11222334444554554443322 23
Q ss_pred EEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhccC
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVST 1433 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~~ 1433 (1513)
-|+.|..|.||+.+.+..+ - +|| .++-|++|.-+..+++|.|.+...++|... .
T Consensus 1839 ~~l~g~~~~g~~~~~efvc-w---------------------lN~--~~m~e~~~hr~~~~~Df~d~lk~~~~~~~~--~ 1892 (3164)
T COG5245 1839 GVLKGVLIRGACDAREFVC-W---------------------LNP--RNMREIFGHRDELTGDFRDSLKVQDLRRNI--H 1892 (3164)
T ss_pred hhhhhhhhhhhHHHHHHHH-H---------------------hCc--cchhhhhcccccchhhHHHHHHHHHHhccc--c
Confidence 3455666666665555443 1 233 456789999999999999999998888653 2
Q ss_pred CCCceEEEEcC-CCChHHHHhhhcccCCCCceeecCC-CeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730 1434 TPDRKWIMFDG-PIDAVWIENMNTVLDDNKKLCLING-EIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1434 ~~~~~WivfDG-~~d~~wiE~LNsvLDdn~~L~L~nG-e~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
.....|+|+|| |+.|.|+|.||.+||.|+.+||-+| |++++|.|.|.+||.+.|...||||+.|.-|+|+..+
T Consensus 1893 ~~r~Cl~I~Esi~~es~fLe~~N~LL~n~~~~~lf~gne~~~I~~nlr~~~es~~L~~dTe~tlt~vFl~~~~~N 1967 (3164)
T COG5245 1893 GGRECLFIFESIPVESSFLEDFNPLLDNNRFLCLFSGNERIRIPENLRFVFESTSLEKDTEATLTRVFLVYMEEN 1967 (3164)
T ss_pred CCceEEEEecCCccchHHHHHhhhhhhccccchhccchhHHHHHHHHHhhhhccccccCCHHHHHHHHHHHHHhc
Confidence 45669999999 9999999999999999999999999 8999999999999999999999999999888876543
No 5
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=100.00 E-value=5.5e-51 Score=497.36 Aligned_cols=715 Identities=20% Similarity=0.242 Sum_probs=481.5
Q ss_pred eeecccchHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC-------CCCC----------
Q psy4730 640 LVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT-------FPPN---------- 702 (1513)
Q Consensus 640 lV~Tplt~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~-------f~~~---------- 702 (1513)
+..|..+.+....++-++.++.+..+.|.+|||||++++.||.++|..+.|+|-+++++ ++|.
T Consensus 444 fAfTs~sl~lleql~~~Iq~nep~LLVGeTGtGKTT~IQ~La~~l~~kltvin~sqqte~sd~lgGykpIn~~tl~lpl~ 523 (4600)
T COG5271 444 FAFTSCSLWLLEQLLWNIQNNEPTLLVGETGTGKTTMIQYLALKLHFKLTVINKSQQTEMSDDLGGYKPINGSTLGLPLH 523 (4600)
T ss_pred eeehhhHHHHHHHHHHHhccCCceEEEecCCCchhhHHHHHHHHhhhhheehhhhhhccchhhcCCcccCCCcccccchH
Confidence 56788888888899999999999999999999999999999999999999999998876 4443
Q ss_pred CCCccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhc-cCcCcccceeeccccccChhHHHHHHH--
Q psy4730 703 LRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLN-LSKDKYLPNIINFSARTSSNITQEMIM-- 779 (1513)
Q Consensus 703 ~~~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~-~~~~~~~~~~~~fs~~t~~~~~q~~i~-- 779 (1513)
.+|.++|-.|........++...-....| -|=|+..-.-..++ +.+...... .....+..-|..+.
T Consensus 524 e~f~~if~~Tfs~kKn~kfi~m~~r~~~~-------~~wkn~~Klw~ea~kis~~~ldgq----~~~~n~qkrqkrl~~q 592 (4600)
T COG5271 524 ERFIDIFEGTFSMKKNIKFICMEQRVSVP-------VCWKNKEKLWWEANKISSKALDGQ----QPLPNPQKRQKRLSNQ 592 (4600)
T ss_pred HHHHHHHHhhcchhhhHHHHHhHHhhccc-------hhhhhHHHHHHHHHHHHHHhccCC----CCCCChHHHhhhhhhH
Confidence 23444454554444444444443222222 23333322211111 100000000 00001111111111
Q ss_pred ----------HHhhhhccCCCCCCCCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCC
Q psy4730 780 ----------AKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPG 849 (1513)
Q Consensus 780 ----------~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1513)
++..||--+......++-.++|+. |++++++++|.
T Consensus 593 ~~l~nqwadfe~~vk~fe~~l~~~en~f~F~fve-------------G~Lvk~~r~Ge---------------------- 637 (4600)
T COG5271 593 VELRNQWADFEAVVKRFEGLLKLLENRFHFVFVE-------------GILVKCMRNGE---------------------- 637 (4600)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcccceEEEEeh-------------hhHHHHHhcCc----------------------
Confidence 111122222333345566788884 56688888888
Q ss_pred cCCCCCChhHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcC----CccccCC
Q psy4730 850 IELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHK----HLYDFQT 925 (1513)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~----~~yd~~~ 925 (1513)
|+++|++|+++.+ +||++-+++... .+|+.++
T Consensus 638 --------------------------------------WlLLDEINLas~e------TLe~I~~lL~~~es~ilLsE~GD 673 (4600)
T COG5271 638 --------------------------------------WLLLDEINLASEE------TLELIDGLLGKKESGILLSESGD 673 (4600)
T ss_pred --------------------------------------eEEeeccccccHH------HHHHHHhhhcCcccceeeeccCC
Confidence 7889999999977 899999999853 3479999
Q ss_pred ceeeeec-ceEEEEeecCC----CCCCChhhhccceEeecCCCChH--HHHHHHHHHhhhhh------------------
Q psy4730 926 VTRVDLV-DIIYITAMIPT----MNTITGRLLRHMNIISIDSFNEA--TLSKIFTSVLDWHF------------------ 980 (1513)
Q Consensus 926 ~~~~~~~-~~~~~~a~~~~----~~~~~~r~~~~f~~~~~~~~~~~--~l~~i~~~~l~~~~------------------ 980 (1513)
.+.+.+| +++++|||||. ++++++.|+.||+.+|+-+|++. +|..|+..++..+-
T Consensus 674 ~~Pi~~Hp~FrlFgCMNP~tDvGKr~le~~~rsrFteIyVhsp~~~l~DllsII~kyig~y~Is~E~v~~~IaElyleaK 753 (4600)
T COG5271 674 LRPIRIHPGFRLFGCMNPGTDVGKRKLEGSFRSRFTEIYVHSPSTSLKDLLSIIHKYIGRYEISEERVSRKIAELYLEAK 753 (4600)
T ss_pred ccccccCCCceEEeecCCCcccccccCCcccccceeEEEEeCccccHHHHHHHHHHHHhheecchHHHhHHHHHHHHHHH
Confidence 9999999 99999999997 78999999999999999999987 77777777653311
Q ss_pred -----------------------------------------------hccchhHHHHHHHHHHHHHHHH-----HHh---
Q psy4730 981 -----------------------------------------------SKGFADSIVKLSKNIVAATFHV-----YSE--- 1005 (1513)
Q Consensus 981 -----------------------------------------------~~~f~~~~~~~~~~~~~~~~~~-----~~~--- 1005 (1513)
|-+|-.-....+++|.-..+.. .+.
T Consensus 754 slsl~~~lvdga~q~Ph~s~RTL~RtL~yVt~i~~iyglrrSlYegFcmsflTlLD~~Sesil~~~~~kftlg~l~~~~a 833 (4600)
T COG5271 754 SLSLGKELVDGAVQEPHVSGRTLVRTLNYVTNIGEIYGLRRSLYEGFCMSFLTLLDFVSESILVSLLSKFTLGLLESQNA 833 (4600)
T ss_pred HhccCCeeccCcCCCcccchHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchh
Confidence 1111111111122222221111 112
Q ss_pred hhhccCCCC--------------------CCCccccchh------hHHH---------HHhhhcccCCcccC------Ch
Q psy4730 1006 STKVFLPIP--------------------SKSHYVFNLR------DFAK---------VIMGLTQLPASHCK------AP 1044 (1513)
Q Consensus 1006 ~~~~~~~~~--------------------~~~hy~fnlr------d~~~---------~~~g~~~~~~~~~~------~~ 1044 (1513)
+.+..+|.| .+.||+.+++ .+.| .+||+++++|+++. |+
T Consensus 834 i~kq~p~~p~~~yi~f~hyw~~~g~~~veeq~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tg 913 (4600)
T COG5271 834 IEKQKPKVPDHSYIAFCHYWKHGGSFPVEEQEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETG 913 (4600)
T ss_pred hhhcCCCCCCccHHHHHHHHHhcCCCchhhcceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhC
Confidence 112222222 3568988664 2223 37999999999984 99
Q ss_pred hhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHhhccccCcccchhhcccceeccccccccccCCc
Q psy4730 1045 DKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGA 1124 (1513)
Q Consensus 1045 ~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~fv~~~~~~~G~ 1124 (1513)
++|||+++|| |++.++|++.+.++. -+++-|..-+--+|++.|.
T Consensus 914 hkfVRINNHE------------------------------HTdlqeYiGTyvTdd------~G~lsFkEGvLVeAlR~Gy 957 (4600)
T COG5271 914 HKFVRINNHE------------------------------HTDLQEYIGTYVTDD------DGSLSFKEGVLVEALRRGY 957 (4600)
T ss_pred ccEEEecCcc------------------------------cchHHHHhhceeecC------CCceeeehhHHHHHHhcCc
Confidence 9999999999 999999998876433 2556677777778999999
Q ss_pred cccccccchhhHhHHHHHHHHHHHHHHHHHhhcccccccc-ceEEecCceEEEEEecC--CCCCCCCCchhHHhhhhccc
Q psy4730 1125 WACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEG-TEISLNPTSMIFITMNP--GYAGRTELPDNLKVLFRSVA 1201 (1513)
Q Consensus 1125 W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g-~~i~~~p~~~iFiTmNp--~y~gr~~LP~nLk~lFR~v~ 1201 (1513)
|+.+||.|.+|.+||.++ ++.+..++..+..|. +.+..||+|++|+|.|| +|+||+-|..++|++|-+++
T Consensus 958 WIVLDELNLApTDVLEaL-------NRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~h 1030 (4600)
T COG5271 958 WIVLDELNLAPTDVLEAL-------NRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMH 1030 (4600)
T ss_pred EEEeeccccCcHHHHHHH-------HHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhh
Confidence 999999999999999555 889999999999997 56789999999999998 59999999999999999999
Q ss_pred cc-CCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCC--CCCcchhhHHHHHHHhhhhhhhCCCChHHHHHH
Q psy4730 1202 MM-VPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQS--HYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVL 1278 (1513)
Q Consensus 1202 ~~-~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~--~yd~glR~lk~vl~~a~~l~~~~~~~~E~~~l~ 1278 (1513)
+. .|.-. .|.+| ..|.+-|++.|+|||.+|+.++-.=|... .-.-++.+++.+.++|++..-.+....+..+++
T Consensus 1031 FddipedE--le~IL-h~rc~iapSyakKiVeVyr~Ls~rRs~~rifeqknsfaTLRDLFrWa~R~avgy~qla~~Gyml 1107 (4600)
T COG5271 1031 FDDIPEDE--LEEIL-HGRCEIAPSYAKKIVEVYRGLSSRRSINRIFEQKNSFATLRDLFRWAGRIAVGYDQLAFLGYML 1107 (4600)
T ss_pred cccCcHHH--HHHHH-hccCccCHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHHHHHhccccchHHHHHHhhHHH
Confidence 86 44433 23444 47899999999999999996643222111 112356778888889886544333333344444
Q ss_pred HHHHhhcCCCCcccchhhHHHHhhccCCCCCCCCCCchHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHhcceEEEec
Q psy4730 1279 RAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVG 1358 (1513)
Q Consensus 1279 ~ai~~~~~pkl~~~d~~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~gvilvG 1358 (1513)
.|-|.. ..+|.--..+.+..+|........-++.++..--+++ .....+..++.--.-...|+.+..+|+|||
T Consensus 1108 laER~R-----~~~dkv~V~~v~ekvmkvk~d~d~~y~smed~slkel--~~v~wt~~m~rl~~lv~~Cl~~kepvlLVg 1180 (4600)
T COG5271 1108 LAERQR-----ELEDKVRVGQVFEKVMKVKSDEDYKYDSMEDISLKEL--SKVVWTEPMCRLERLVGKCLVTKEPVLLVG 1180 (4600)
T ss_pred HHHHhc-----CHHhhhhHHHHHHHHHhhhhcchhhhhhHhhhhHHhh--hhcccccchhhhhhHHHHhhcccCceEEEe
Confidence 444332 2234334444455555321111112233332222221 223345555555556777889999999999
Q ss_pred cCCCCchHHHHHHHHHHHhH----hhhhcccccc-----ccee----------------EEEecCCCCChhhccccccCC
Q psy4730 1359 ESFGGKTTAYQTLADSLTDI----AAKKSATMKE-----FKTG----------------YKIINPKSITMGQLYGEFDSA 1413 (1513)
Q Consensus 1359 ~tgsGKTt~~~~L~~~~~~l----~~~~~~~~~~-----~~~~----------------~~~inp~~~t~~eL~G~~~~~ 1413 (1513)
+|||||||.+++||..+++. ++...+..+. .+|. ..+-+..-+++.|++-.+.+.
T Consensus 1181 etgcgktt~cqvLa~~~~rel~~~nahq~Te~gdiigaqrPVrnrse~~y~l~k~l~~a~nV~~~~didL~e~~~~~ssS 1260 (4600)
T COG5271 1181 ETGCGKTTGCQVLADTFRRELNLMNAHQETENGDIIGAQRPVRNRSETGYGLTKALDIASNVFKTRDIDLIEMHRGISSS 1260 (4600)
T ss_pred ecCcchhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhhHHHHHHHHHhhhhhhcchHHHHHhhhccc
Confidence 99999999999999998873 2222221110 1111 112333445565666555443
Q ss_pred C------------------CCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecC-C---
Q psy4730 1414 S------------------HEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLIN-G--- 1469 (1513)
Q Consensus 1414 t------------------~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~n-G--- 1469 (1513)
. .+|+||.|.++||.+ ..+++| ...|.+++|+|||||+..|+|+|.. |
T Consensus 1261 dn~nls~~~e~~I~k~r~lfeW~DGpLV~AMk~G--------dfFLlDEIsLAdDSVLERLNSVLE~~RtL~l~E~g~a~ 1332 (4600)
T COG5271 1261 DNDNLSFIGESFIFKNRKLFEWKDGPLVKAMKCG--------DFFLLDEISLADDSVLERLNSVLESQRTLYLTETGNAA 1332 (4600)
T ss_pred ccccHHHHHHHHHHHhhhheeeccchHHHHHhcC--------CeeEeeeccccchHHHHHHHHhhcccceEEEeecCCcc
Confidence 3 379999999999999 899999 5679999999999999999999986 5
Q ss_pred CeeecCCCCeEEEeecCC------CCCCcchhhccEEEEeeCC
Q psy4730 1470 EIIKMSNTMNLIFECENL------EFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1470 e~i~~~~~~~~iFE~~~l------~~asPatvsRcg~v~~~~~ 1506 (1513)
+.+..+++++| |.|.|- +-.|||.-.|..=||+++.
T Consensus 1333 ~~vtA~dgF~f-fATMNPGGDyGKkELSPALRNRFTEiwvp~m 1374 (4600)
T COG5271 1333 EEVTAHDGFRF-FATMNPGGDYGKKELSPALRNRFTEIWVPVM 1374 (4600)
T ss_pred ceeeeccCceE-EEeeCCCCccchhhCCHHHhcccceEeeccc
Confidence 77888888776 556554 4589999999999998764
No 6
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=100.00 E-value=5e-41 Score=410.94 Aligned_cols=629 Identities=18% Similarity=0.240 Sum_probs=425.0
Q ss_pred ccceeecccchHHHHHHHHHHHh-hcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCCCCCCCCCccccccchhh
Q psy4730 637 SDRLVITPLTDRCYRTLMSALKL-HLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVT 715 (1513)
Q Consensus 637 ~~rlV~Tplt~r~~~~l~~al~~-~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~f~~~~~~~~~~v~t~~~ 715 (1513)
....|+||..++-|+.+++|-+. .++-.++||+++|||++++.||+..|+.++.+|-++.++.
T Consensus 864 q~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdl---------------- 927 (4600)
T COG5271 864 QEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDL---------------- 927 (4600)
T ss_pred cceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchH----------------
Confidence 45689999999999999887665 4555668999999999999999999999999999999880
Q ss_pred hhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhhccCCCCCCCC
Q psy4730 716 CMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMG 795 (1513)
Q Consensus 716 ~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~~~~~~~~~~ 795 (1513)
|. |+ |.|.. ..
T Consensus 928 -------------------------------qe---------Yi----------------------------GTyvT-dd 938 (4600)
T COG5271 928 -------------------------------QE---------YI----------------------------GTYVT-DD 938 (4600)
T ss_pred -------------------------------HH---------Hh----------------------------hceee-cC
Confidence 10 11 11111 11
Q ss_pred ceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHHHHHhhhcccc
Q psy4730 796 KKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQA 875 (1513)
Q Consensus 796 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1513)
...+.| +.|+++.|++.|.
T Consensus 939 ~G~lsF-------------kEGvLVeAlR~Gy------------------------------------------------ 957 (4600)
T COG5271 939 DGSLSF-------------KEGVLVEALRRGY------------------------------------------------ 957 (4600)
T ss_pred CCceee-------------ehhHHHHHHhcCc------------------------------------------------
Confidence 111223 2456777777776
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhc-CCccccCCceeeeec-ceEEEEeecCC-----CCCCC
Q psy4730 876 TDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDH-KHLYDFQTVTRVDLV-DIIYITAMIPT-----MNTIT 948 (1513)
Q Consensus 876 ~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~-~~~yd~~~~~~~~~~-~~~~~~a~~~~-----~~~~~ 948 (1513)
|+.+|++|++..| +||-|..|+|. ..+|-|+..+.+.-| |+.++|+.||| |+.++
T Consensus 958 ------------WIVLDELNLApTD------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LS 1019 (4600)
T COG5271 958 ------------WIVLDELNLAPTD------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLS 1019 (4600)
T ss_pred ------------EEEeeccccCcHH------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHH
Confidence 7778999999988 99999999996 589999999999999 99999999998 89999
Q ss_pred hhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccC--CCCCCCccccchhhH
Q psy4730 949 GRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFL--PIPSKSHYVFNLRDF 1026 (1513)
Q Consensus 949 ~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~hy~fnlrd~ 1026 (1513)
..|++||-.++.+....+.|..|...- | +++.+-....++||+++..+-- +.=.+-.-.-+|||+
T Consensus 1020 rAFRNRFlE~hFddipedEle~ILh~r-----c--------~iapSyakKiVeVyr~Ls~rRs~~rifeqknsfaTLRDL 1086 (4600)
T COG5271 1020 RAFRNRFLEMHFDDIPEDELEEILHGR-----C--------EIAPSYAKKIVEVYRGLSSRRSINRIFEQKNSFATLRDL 1086 (4600)
T ss_pred HHHHhhhHhhhcccCcHHHHHHHHhcc-----C--------ccCHHHHHHHHHHHHHhhhhhhHHHHHHhhhhHHHHHHH
Confidence 999999999999999999998887652 2 2344555566677777543211 000111122379999
Q ss_pred HHHHhhhcccCCcccCChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHH------HhhccccCcc
Q psy4730 1027 AKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDE------FLKNKITDKT 1100 (1513)
Q Consensus 1027 ~~~~~g~~~~~~~~~~~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 1100 (1513)
+||.--....-.+.+.. .+-..+.|-.+.+||-.+.+.+.++.+-...++..+ .++. + .+-
T Consensus 1087 FrWa~R~avgy~qla~~-----------GymllaER~R~~~dkv~V~~v~ekvmkvk~d~d~~y~smed~slke-l-~~v 1153 (4600)
T COG5271 1087 FRWAGRIAVGYDQLAFL-----------GYMLLAERQRELEDKVRVGQVFEKVMKVKSDEDYKYDSMEDISLKE-L-SKV 1153 (4600)
T ss_pred HHHhccccchHHHHHHh-----------hHHHHHHHhcCHHhhhhHHHHHHHHHhhhhcchhhhhhHhhhhHHh-h-hhc
Confidence 99963222111111111 233557788888888888877777766543322111 0000 0 000
Q ss_pred cchhhcccc--------------------------------------e--------------------------------
Q psy4730 1101 ISADDLRSL--------------------------------------F-------------------------------- 1110 (1513)
Q Consensus 1101 ~~~~~~~~l--------------------------------------~-------------------------------- 1110 (1513)
+|+..++++ +
T Consensus 1154 ~wt~~m~rl~~lv~~Cl~~kepvlLVgetgcgktt~cqvLa~~~~rel~~~nahq~Te~gdiigaqrPVrnrse~~y~l~ 1233 (4600)
T COG5271 1154 VWTEPMCRLERLVGKCLVTKEPVLLVGETGCGKTTGCQVLADTFRRELNLMNAHQETENGDIIGAQRPVRNRSETGYGLT 1233 (4600)
T ss_pred ccccchhhhhhHHHHhhcccCceEEEeecCcchhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhhHH
Confidence 111100000 0
Q ss_pred ------------------------------------------------eccccccccccCCccccccccchhhHhHHHHH
Q psy4730 1111 ------------------------------------------------FGNFLGNTIIFPGAWACFDEFNRIELEVLSVV 1142 (1513)
Q Consensus 1111 ------------------------------------------------f~~fv~~~~~~~G~W~~~de~n~l~~~vLs~v 1142 (1513)
+.|-.--.||++|....+||++.++..||
T Consensus 1234 k~l~~a~nV~~~~didL~e~~~~~ssSdn~nls~~~e~~I~k~r~lfeW~DGpLV~AMk~GdfFLlDEIsLAdDSVL--- 1310 (4600)
T COG5271 1234 KALDIASNVFKTRDIDLIEMHRGISSSDNDNLSFIGESFIFKNRKLFEWKDGPLVKAMKCGDFFLLDEISLADDSVL--- 1310 (4600)
T ss_pred HHHHHHHhhhhhhcchHHHHHhhhcccccccHHHHHHHHHHHhhhheeeccchHHHHHhcCCeeEeeeccccchHHH---
Confidence 00000012899999999999999999998
Q ss_pred HHHHHHHHHHHHhhccccccc-c---ceEEecCceEEEEEecCC-CCCCCCCchhHHhhhhccccc----CCChHHHHHH
Q psy4730 1143 AQQVQSIQLATIAKLKKFMFE-G---TEISLNPTSMIFITMNPG-YAGRTELPDNLKVLFRSVAMM----VPDYAMIGEI 1213 (1513)
Q Consensus 1143 ~~~i~~i~~~l~~~~~~~~~~-g---~~i~~~p~~~iFiTmNp~-y~gr~~LP~nLk~lFR~v~~~----~PD~~~I~ei 1213 (1513)
.+++.++...+....-| | ..+.+|.+|++|+||||| .-|+++|.++||++|.++.+- ..|+..|+++
T Consensus 1311 ----ERLNSVLE~~RtL~l~E~g~a~~~vtA~dgF~ffATMNPGGDyGKkELSPALRNRFTEiwvp~m~D~~d~~~iv~~ 1386 (4600)
T COG5271 1311 ----ERLNSVLESQRTLYLTETGNAAEEVTAHDGFRFFATMNPGGDYGKKELSPALRNRFTEIWVPVMSDEADLIFIVLV 1386 (4600)
T ss_pred ----HHHHHhhcccceEEEeecCCccceeeeccCceEEEeeCCCCccchhhCCHHHhcccceEeecccccccchhhhhhh
Confidence 56677777777776666 5 789999999999999995 678899999999999998764 3455666666
Q ss_pred HHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCC--cchhhHHHHHHHhhhhhhhCCCChHHHHHHHHHHhhcCCC---
Q psy4730 1214 SLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYD--YGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPK--- 1288 (1513)
Q Consensus 1214 ~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd--~glR~lk~vl~~a~~l~~~~~~~~E~~~l~~ai~~~~~pk--- 1288 (1513)
-|. . +-..||+.++.+++...+.+ .|. .++|.+-.+.....+.+. .+-..++++|...+++..
T Consensus 1387 ~l~-~---~~vdla~p~ve~~kw~a~~l----~~~~vISiRd~l~~VEFIn~~~i----~d~~~~l~~~~smvfidalG~ 1454 (4600)
T COG5271 1387 DLR-F---GEVDLAKPSVETFKWLARSL----LYNDVISIRDLLLIVEFINRREI----LDLNLVLFNAVSMVFIDALGE 1454 (4600)
T ss_pred hhh-c---CcccccchHHHHHHHHHHHh----hccCceeHHHHHHHHHHHHHHHh----hhhhhHhhhhhhHHHHHHhcc
Confidence 653 2 34679999999999765554 232 445544443322211110 011112222211111111
Q ss_pred --------------------------CcccchhhHHHH-h------hccCCC-CCCCCCCchHHHHHHHHHHHHcCcccc
Q psy4730 1289 --------------------------FLVQDLPLFIGI-Y------KDLFPG-IELPPTDRDELIEQIKINLAKRNAQAT 1334 (1513)
Q Consensus 1289 --------------------------l~~~d~~lf~~l-i------~~~Fp~-~~~~~~~~~~l~~~i~~~~~~~~l~~~ 1334 (1513)
|-..++..-..- . ..+|.| +..|..+...-. ..-.+. +
T Consensus 1455 fst~~laen~~dl~s~r~~c~v~l~~L~g~~i~~~~~~~n~i~f~d~~~f~g~f~iP~~~~~~S~-------Ssf~l~-s 1526 (4600)
T COG5271 1455 FSTVALAENGLDLESERQRCFVWLEALEGAGIKGIEADVNAIYFEDERMFGGDFVIPYLVEHHSS-------SSFDLE-S 1526 (4600)
T ss_pred cchhHHhhcccchhHHHHHHHHHHHHhccCCceeeecccceeEecccceeccccccccccccccC-------cccccc-C
Confidence 111111111000 0 111111 011111100000 001111 2
Q ss_pred HHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhccccccCC
Q psy4730 1335 DWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYGEFDSA 1413 (1513)
Q Consensus 1335 ~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~G~~~~~ 1413 (1513)
|.-......+.+++++..|+||.|.||.|||+++.+||+.++ .++.+||-...| +-+|||+.-|.
T Consensus 1527 pTT~~Nl~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~tG--------------~kliRINLSeQTdL~DLfGsd~Pv 1592 (4600)
T COG5271 1527 PTTTVNLRRVLRAMQVGKPILLEGSPGVGKTSLITALARKTG--------------KKLIRINLSEQTDLCDLFGSDLPV 1592 (4600)
T ss_pred CchHHhHHHHHHHHhcCCceeecCCCCccHHHHHHHHHHHhc--------------CceEEeeccccchHHHHhCCCCCc
Confidence 344456667788999999999999999999999999998887 467999999988 99999999998
Q ss_pred CC--C--CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCe-eecCCCCeEEEeecC
Q psy4730 1414 SH--E--WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEI-IKMSNTMNLIFECEN 1486 (1513)
Q Consensus 1414 t~--e--W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~-i~~~~~~~~iFE~~~ 1486 (1513)
.+ + |.|..|..+||++ .|+++| +.+..+++|.||++||+.+...+|.=+. ...+||++ +|.++|
T Consensus 1593 e~~Gef~w~dapfL~amr~G--------~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~Hpnfr-VFAaqN 1663 (4600)
T COG5271 1593 EEGGEFRWMDAPFLHAMRDG--------GWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFR-VFAAQN 1663 (4600)
T ss_pred ccCceeEecccHHHHHhhcC--------CEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCee-eeeecC
Confidence 73 3 9999999999999 999999 5678899999999999999999999665 78888865 677877
Q ss_pred CC-------CCCcchhhccEEEEeeC
Q psy4730 1487 LE-------FASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1487 l~-------~asPatvsRcg~v~~~~ 1505 (1513)
-. ....+.+.|.++||+|.
T Consensus 1664 Pq~qggGRKgLPkSF~nRFsvV~~d~ 1689 (4600)
T COG5271 1664 PQDQGGGRKGLPKSFLNRFSVVKMDG 1689 (4600)
T ss_pred chhcCCCcccCCHHHhhhhheEEecc
Confidence 63 35669999999999985
No 7
>KOG3595|consensus
Probab=100.00 E-value=1.1e-41 Score=463.32 Aligned_cols=387 Identities=33% Similarity=0.558 Sum_probs=335.5
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhhc
Q psy4730 707 DLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRR 786 (1513)
Q Consensus 707 ~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~ 786 (1513)
+++|||.++.|+.++++.++..++|+++|||+|+|||++++..+.+........ ++||..|+++.+|.++++++++++
T Consensus 105 ~~~v~t~dt~r~~~~~~~~~~~~k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~--~~fs~~ts~~~~q~~~~~~~~k~~ 182 (1395)
T KOG3595|consen 105 DILVPTIDTVRYDRLLKLLLAHGKPVLLVGPTGTGKTVLVLSELRSLQDREVYL--LNFSSVTSSELLQEIIESKLDKRR 182 (1395)
T ss_pred ceecCccceeeHHHHHHHHHHhCCeEEEEcCCCCCeeeehHHHHHhcccchheE--EeeeeeccHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999998865533222 999999999999999999999999
Q ss_pred cCCCCCCCCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHHH
Q psy4730 787 KGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKI 866 (1513)
Q Consensus 787 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1513)
++.|||+.+++.++|+
T Consensus 183 ~~~~~~~~~~~~~~f~---------------------------------------------------------------- 198 (1395)
T KOG3595|consen 183 SGNYGPPLGKKLVLFV---------------------------------------------------------------- 198 (1395)
T ss_pred ccCCCCCCCceeEEEE----------------------------------------------------------------
Confidence 9999999999999997
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC---
Q psy4730 867 NLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--- 943 (1513)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--- 943 (1513)
||+|||..|.||+|++++++||+++|+||||+.+.+|+.++|+++++||+||
T Consensus 199 -------------------------ddinmp~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~g 253 (1395)
T KOG3595|consen 199 -------------------------DDINMPALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGG 253 (1395)
T ss_pred -------------------------eccCCchhhhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCc
Confidence 9999999999999999999999999999999999999999999999999987
Q ss_pred CCCCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccch
Q psy4730 944 MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNL 1023 (1513)
Q Consensus 944 ~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnl 1023 (1513)
|+++|+||.|||.+++++.|+.+++.+||+.++.+++. |.+.......+|+++++.+|..+..+++|+|.++||+||+
T Consensus 254 r~~i~~r~~r~f~~~~~~~~~~~sl~~if~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~l 331 (1395)
T KOG3595|consen 254 RNDITERFLRHFLIVSLNYPSQESLTQIFNTILTGHLR--FAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNL 331 (1395)
T ss_pred cCcccHHHHHHeeeEeeCCCChhhHHHHHHHHHhcccC--ccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeech
Confidence 89999999999999999999999999999999999986 7777777799999999999999999999999999999999
Q ss_pred hhHHHHHhhhcccCCcccCChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHhhccccCcccch
Q psy4730 1024 RDFAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISA 1103 (1513)
Q Consensus 1024 rd~~~~~~g~~~~~~~~~~~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1103 (1513)
||++||++|++.+.+.+..+...++|+|+||+.|||+||+++.+|++|+.+.+...+...|+...
T Consensus 332 rd~~r~~~~i~~~~~~~~~~~~~l~~~~~~e~~rv~~drlv~~~~~~~~~~~~~~~~~~~~~~~~--------------- 396 (1395)
T KOG3595|consen 332 RDLSRVVQGILLAVSEALLTLEDLIRLWVHEAIRVFADRLVDDEDRQWFDKKLQEVLLKLFEADS--------------- 396 (1395)
T ss_pred hhhhhheeehcccCcHhhccHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHhhhhh---------------
Confidence 99999999999999888889999999999999999999999999999999999999988887643
Q ss_pred hhcccceeccccccccccCCccccccccchhhHhHHH-------------------HHHHHHHHHHHHHHhhcccccccc
Q psy4730 1104 DDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLS-------------------VVAQQVQSIQLATIAKLKKFMFEG 1164 (1513)
Q Consensus 1104 ~~~~~l~f~~fv~~~~~~~G~W~~~de~n~l~~~vLs-------------------~v~~~i~~i~~~l~~~~~~~~~~g 1164 (1513)
.-++.+||+|..... +-|.-...+..+...+.. -...++.++.+.++.+.++....|
T Consensus 397 -~~~~~~~~~~~~~~~---~~y~~~~~~~~l~~~~~~~l~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvg 472 (1395)
T KOG3595|consen 397 -LQMPLLYGDFRSESH---KIYEEVLSVELLRGVLEAYLKQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVG 472 (1395)
T ss_pred -hcCCceeeecccccc---cccCchHhHHHHHHHHHHHHHHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEee
Confidence 225667777776332 233333333333222222 245677788999998888777665
Q ss_pred ceE-----------EecCceEEEEEecCCCCCCCCCchhHHhhhhcccccCCC
Q psy4730 1165 TEI-----------SLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPD 1206 (1513)
Q Consensus 1165 ~~i-----------~~~p~~~iFiTmNp~y~gr~~LP~nLk~lFR~v~~~~PD 1206 (1513)
... .+++...+.++.+-+|.+- ++-+.|+.+.|-+......
T Consensus 473 v~g~gkqsl~r~~~~~~~~~~fq~~~~~~y~~~-~~~~dl~~~~r~~g~~~~~ 524 (1395)
T KOG3595|consen 473 VGGSGKQSLTRLAAFINGLSVFQIEITRSYNIE-DFREDLKAILRKAGLKNKE 524 (1395)
T ss_pred cCCCCcccHHHHHHhhccccceeeeccccCcHH-HHHHHHHHHHHHhccCCCc
Confidence 222 2566667788888888764 7888889888887655433
No 8
>KOG1808|consensus
Probab=99.94 E-value=3.7e-26 Score=301.66 Aligned_cols=519 Identities=18% Similarity=0.214 Sum_probs=349.3
Q ss_pred HHHhhccCCCCCccCCCCChHHHHHHHHhcC--CccccCCceeeeec-ceEEEEeecCC----CCCCChhhhccceEeec
Q psy4730 888 EMILDDLNMPQKETYGAQPAVELLRQIIDHK--HLYDFQTVTRVDLV-DIIYITAMIPT----MNTITGRLLRHMNIISI 960 (1513)
Q Consensus 888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~--~~yd~~~~~~~~~~-~~~~~~a~~~~----~~~~~~r~~~~f~~~~~ 960 (1513)
|+++|++|+...+ .+|++.++++.. .++++++.+...+| ++.+++||||. +..+++.++++|+++++
T Consensus 215 w~lldeinla~~~------~l~~i~~vl~~~~i~l~e~~d~~~l~~hp~f~~f~cmnp~td~gK~~l~~~~r~~~te~~v 288 (1856)
T KOG1808|consen 215 WLLLDEINLASAE------TLELISQVLGKCSILLSERGDYTPLKIHPNFRIFACMNPATDVGKRDLKPGKRNRFTEFSV 288 (1856)
T ss_pred hhhhhhhccchHH------HHHHHHHhccCceeeccccccccccCCCcchhhhhccCccchhhhhhcCcchhcceEEEEE
Confidence 4458999999876 799999999985 56788888888888 99999999996 78999999999999998
Q ss_pred CCCChHHHH-----------------HHHHHHhhhh----------------------------------------hhc-
Q psy4730 961 DSFNEATLS-----------------KIFTSVLDWH----------------------------------------FSK- 982 (1513)
Q Consensus 961 ~~~~~~~l~-----------------~i~~~~l~~~----------------------------------------~~~- 982 (1513)
..+....-. .|-..++... ||-
T Consensus 289 ~~~~~~~~~~l~~~~~~~~i~~e~v~~~~e~~~~~k~~~~~dg~~~~~~s~r~l~raL~~v~~~~~~~~~~slyE~~~~s 368 (1856)
T KOG1808|consen 289 HTSLEDADLSLSVVDKYIAISSEPVRNIVELYLSAKSLSLVDGNQRPLYSIRTLCRALRIVLDSLPAEVDRSLYEAFCMS 368 (1856)
T ss_pred echhhhhhhhhhhhccccccchhhHHhHHHHhhhccccccccccccchhhhhhHHHHHHHHHHhhhhhhhcchHHHHHHH
Confidence 877655211 1111111100 000
Q ss_pred ---cchhHHHHHHHHHHHHHHHHHHhhhhccCCC---------------CCCCccccch------hhHHHH---------
Q psy4730 983 ---GFADSIVKLSKNIVAATFHVYSESTKVFLPI---------------PSKSHYVFNL------RDFAKV--------- 1029 (1513)
Q Consensus 983 ---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~hy~fnl------rd~~~~--------- 1029 (1513)
.+..+..+....++.+... ..+..+++ ..+.||++++ +|+.+.
T Consensus 369 flt~le~~s~~~~~~l~~~~~~----~~~q~P~~~~~~~~~i~~gs~~~~~~~~~i~T~~vq~~la~~~~a~~~~~~pil 444 (1856)
T KOG1808|consen 369 FLTQLEGESHKRLVKLIQRALL----ITKQVPASPRFEGYWIPSGSELTSEATHYIITPRVQKNLADLARAISSGKFPIL 444 (1856)
T ss_pred HHHhcchHHHHHHHHHHHHHHH----hcccCCCCcccceeecCCCCccccccceeeccHHHHHHHHHHHHHHhcCCCCeE
Confidence 0111111112222222222 22222222 2367899954 566665
Q ss_pred HhhhcccCCcccC------ChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHhhccccCcccch
Q psy4730 1030 IMGLTQLPASHCK------APDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISA 1103 (1513)
Q Consensus 1030 ~~g~~~~~~~~~~------~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1103 (1513)
+||.+.++|+++. ++..++|+.+|| |++.++|++.+.....
T Consensus 445 lqG~tssGKtsii~~la~~~g~~~vrinnhe------------------------------htd~qeyig~y~~~~~--- 491 (1856)
T KOG1808|consen 445 LQGPTSSGKTSIIKELARATGKNIVRINNHE------------------------------HTDLQEYIGTYVADDN--- 491 (1856)
T ss_pred EecCcCcCchhHHHHHHHHhccCceehhccc------------------------------cchHHHHHHhhhcCCC---
Confidence 5899999999985 889999999999 9999999997765433
Q ss_pred hhcccceeccccccccccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhcccccccc-ceEEecCceEEEEEecCC
Q psy4730 1104 DDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEG-TEISLNPTSMIFITMNPG 1182 (1513)
Q Consensus 1104 ~~~~~l~f~~fv~~~~~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g-~~i~~~p~~~iFiTmNp~ 1182 (1513)
.++.|-+-+--.|++.|+|..|||+|+.+.+||.|+ ++++..+++.+..++ +.++.||+|++|+|.||+
T Consensus 492 ---g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aL-------nrllddnRel~ipe~~rlv~~h~~f~lfatqn~~ 561 (1856)
T KOG1808|consen 492 ---GDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEAL-------NRLLDDNRELFIPETQRLVKAHPEFMLFATQNPP 561 (1856)
T ss_pred ---CCeeeehhHHHHHHHhCCEEEeccccccchHHHHHH-------HhhhhhhccccccccceeeccCcchhhhhhccCc
Confidence 455666666667899999999999999999999665 788889999999997 689999999999999995
Q ss_pred --CCCCCCCchhHHhhhhccccc-CCChHHHHHHHHHhcCccchHHHHHHHHHHHHHH--HhhccCCCCCCcchhhHHHH
Q psy4730 1183 --YAGRTELPDNLKVLFRSVAMM-VPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLC--SEQLSSQSHYDYGMRAVKSV 1257 (1513)
Q Consensus 1183 --y~gr~~LP~nLk~lFR~v~~~-~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~--~~~ls~q~~yd~glR~lk~v 1257 (1513)
|+||+.|-.+|++.|-++.+. .|.-.+. .+ ...+...++..+++++..|.-+ ++|+|.=.+..-|+-.++..
T Consensus 562 ~~y~grk~lsRa~~~rf~e~~f~~~~e~e~~--~i-~~~~~~i~~~~~~k~~~~~~~L~~~rqls~i~e~~~~~gtlrd~ 638 (1856)
T KOG1808|consen 562 GTYGGRKILSRALRNRFIELHFDDIGEEELE--EI-LEHRCGIPPSYEKKMVQVMRELSLRRQLSRIFEQKPSFGTLRDL 638 (1856)
T ss_pred cccchhhhhhhcccccchhhhhhhcCchhhh--hh-hcccccCCchHHHHHHHHhhhhhhHHHHhhHHHhccccCCcHHH
Confidence 999999999999999988766 3433322 12 3456778889999999999854 45665222222233344455
Q ss_pred HHHhhhhhhhCC----CChHHHHHHHHHHhhcCCCCcccchhhHHHHhhccCCCCCCCCCCchHHHHHHHHHHHHcCccc
Q psy4730 1258 LNAAGSLKIKYP----EKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQA 1333 (1513)
Q Consensus 1258 l~~a~~l~~~~~----~~~E~~~l~~ai~~~~~pkl~~~d~~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~~~~~~~l~~ 1333 (1513)
.+++.+...... ...+..+.+-|-+.. ...+...- ..+....+.+++....... ..
T Consensus 639 f~w~~r~~e~~~~~~~~l~~~g~~~L~~r~r-----~~~~~~~v-------------~~~~e~~~~~~~~~~~l~~--~~ 698 (1856)
T KOG1808|consen 639 FRWLLRFTETIAESNDQLAENGYMLLSSRQR-----YEKEKRLV-------------QQPLEKVMRKAVDKDQLST--VW 698 (1856)
T ss_pred HHHHhhccccccchhhhhhhhhHHHhhhhhh-----ccchhhhh-------------hccchhhhHHHHHHHHHHh--hc
Confidence 555544221111 111222333332221 11111111 1122234556665555543 34
Q ss_pred cHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-----------
Q psy4730 1334 TDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----------- 1402 (1513)
Q Consensus 1334 ~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----------- 1402 (1513)
++.+..-.+.-..+......+ ++|++||||||++++++..... .+.+++-++.+
T Consensus 699 t~~m~r~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 763 (1856)
T KOG1808|consen 699 TPGMTRLTIEKALVLAIKEQV-LVGLTGCGDTTVCQILAEKSGV--------------ALRILNAHEHTEAQRPNVLFRE 763 (1856)
T ss_pred chhhhhhhhhHHHHHHhhcch-hcccccccchhhhhhhhhcccc--------------eeeeehhhhhhhhccccccccc
Confidence 455555455555556667788 9999999999999999866542 33444444444
Q ss_pred -hhhcccccc---CCCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecC-----CCe
Q psy4730 1403 -MGQLYGEFD---SASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLIN-----GEI 1471 (1513)
Q Consensus 1403 -~~eL~G~~~---~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~n-----Ge~ 1471 (1513)
.+...|.-+ .+.-+|.||+|+.+++.+ .-++.| -+.+.+..|++|++|...++|.+.. ++.
T Consensus 764 n~~~~~~~~~~~~~~~~ew~dglLi~a~~~G--------~~~l~Dei~la~dsvleRln~~Le~~rtL~~~e~~~a~~~~ 835 (1856)
T KOG1808|consen 764 NLQHDEIREDKMLKDLFEWSDGLLIGAQGVG--------KQFLVDEISLAEDSVLERLNEVLEPDRTLLLLENQTAEEET 835 (1856)
T ss_pred cchhhHhhhhhhhhccccccCccchhhhhcc--------chhhhhccccchhhHHHHHHHHhCcccccccccccccchhc
Confidence 233333333 233479999999999998 566677 4557778999999999999999887 666
Q ss_pred eecCCCCeEEEeecCC------CCCCcchhhccEEEEeeCC
Q psy4730 1472 IKMSNTMNLIFECENL------EFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1472 i~~~~~~~~iFE~~~l------~~asPatvsRcg~v~~~~~ 1506 (1513)
+...+...+ +-+.+. +-+|||--.|..-+|+.+.
T Consensus 836 v~A~~~f~~-~atmnpGgd~gkkEls~AlrNrfte~~~~~~ 875 (1856)
T KOG1808|consen 836 VIAEEGFQL-VATMNPGGDYGKKELSPALRNRFTEVILQSL 875 (1856)
T ss_pred eeecccchh-hhccCCccccceeecChhhhhceeEEEEecc
Confidence 777776555 455555 4499999999999998654
No 9
>KOG1808|consensus
Probab=99.88 E-value=3.9e-22 Score=263.96 Aligned_cols=334 Identities=18% Similarity=0.230 Sum_probs=232.1
Q ss_pred cccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccc-c--ceEEecCceEEEEEecCC-CCCCCCCchhHH
Q psy4730 1119 IIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFE-G--TEISLNPTSMIFITMNPG-YAGRTELPDNLK 1194 (1513)
Q Consensus 1119 ~~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~-g--~~i~~~p~~~iFiTmNp~-y~gr~~LP~nLk 1194 (1513)
++..|.|..+||+|..+.+.|-++++-+.. ...+..+ | ..+..||++.+|.+|||. ..|+..||...+
T Consensus 209 ~~~~g~w~lldeinla~~~~l~~i~~vl~~--------~~i~l~e~~d~~~l~~hp~f~~f~cmnp~td~gK~~l~~~~r 280 (1856)
T KOG1808|consen 209 TISNGEWLLLDEINLASAETLELISQVLGK--------CSILLSERGDYTPLKIHPNFRIFACMNPATDVGKRDLKPGKR 280 (1856)
T ss_pred HHhccchhhhhhhccchHHHHHHHHHhccC--------ceeeccccccccccCCCcchhhhhccCccchhhhhhcCcchh
Confidence 566999999999999999999888666544 2222222 2 568899999999999995 699999999999
Q ss_pred hhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCC--CCCcchhhHHHHHHHhhhhhhhCCCCh
Q psy4730 1195 VLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQS--HYDYGMRAVKSVLNAAGSLKIKYPEKD 1272 (1513)
Q Consensus 1195 ~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~--~yd~glR~lk~vl~~a~~l~~~~~~~~ 1272 (1513)
+.|+.+++..|....=..+.-...-+........+++.+|...+....... .--+.+|.+.+.|+.+-... |. .
T Consensus 281 ~~~te~~v~~~~~~~~~~l~~~~~~~~i~~e~v~~~~e~~~~~k~~~~~dg~~~~~~s~r~l~raL~~v~~~~---~~-~ 356 (1856)
T KOG1808|consen 281 NRFTEFSVHTSLEDADLSLSVVDKYIAISSEPVRNIVELYLSAKSLSLVDGNQRPLYSIRTLCRALRIVLDSL---PA-E 356 (1856)
T ss_pred cceEEEEEechhhhhhhhhhhhccccccchhhHHhHHHHhhhccccccccccccchhhhhhHHHHHHHHHHhh---hh-h
Confidence 999999998776532222221111123334444457777766544431111 11356777777776643211 11 2
Q ss_pred HHHHHHHHHHhhcCCCCcccchhhHHHHhhccCC-CCCCCCCCchHHHHHHH----HHHH-HcCccccHHHHHHHHHHHH
Q psy4730 1273 EFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFP-GIELPPTDRDELIEQIK----INLA-KRNAQATDWYIEKIIQVYE 1346 (1513)
Q Consensus 1273 E~~~l~~ai~~~~~pkl~~~d~~lf~~li~~~Fp-~~~~~~~~~~~l~~~i~----~~~~-~~~l~~~~~~~~k~~qL~~ 1346 (1513)
-..-++.+.+..++..|..+.......++...|= ....|... .+..... +... ...+..|+...+....+.+
T Consensus 357 ~~~slyE~~~~sflt~le~~s~~~~~~l~~~~~~~~~q~P~~~--~~~~~~i~~gs~~~~~~~~~i~T~~vq~~la~~~~ 434 (1856)
T KOG1808|consen 357 VDRSLYEAFCMSFLTQLEGESHKRLVKLIQRALLITKQVPASP--RFEGYWIPSGSELTSEATHYIITPRVQKNLADLAR 434 (1856)
T ss_pred hhcchHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcccCCCCc--ccceeecCCCCccccccceeeccHHHHHHHHHHHH
Confidence 2334666666666677777666666666654442 11222221 1111110 0011 1225566666666777777
Q ss_pred HHHhc-ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhccc-cccCCCCC--CccCH
Q psy4730 1347 MILVR-HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYG-EFDSASHE--WRDGI 1421 (1513)
Q Consensus 1347 ~~~~~-~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~G-~~~~~t~e--W~DG~ 1421 (1513)
+..++ -+++|.||||||||++++.||+++++ ++.+||.+..| .+|+.| ++...+++ |++|+
T Consensus 435 a~~~~~~pillqG~tssGKtsii~~la~~~g~--------------~~vrinnhehtd~qeyig~y~~~~~g~l~freg~ 500 (1856)
T KOG1808|consen 435 AISSGKFPILLQGPTSSGKTSIIKELARATGK--------------NIVRINNHEHTDLQEYIGTYVADDNGDLVFREGV 500 (1856)
T ss_pred HHhcCCCCeEEecCcCcCchhHHHHHHHHhcc--------------CceehhccccchHHHHHHhhhcCCCCCeeeehhH
Confidence 76666 49999999999999999999999874 56777776666 999999 55555554 99999
Q ss_pred HHHHHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC
Q psy4730 1422 LAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE 1488 (1513)
Q Consensus 1422 l~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~ 1488 (1513)
+..++|++ .|+|||| -+.+..+|.||.+|||||.|.+|+|.|.--++..+++|-|.+-.
T Consensus 501 LV~Alr~G--------~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~ 561 (1856)
T KOG1808|consen 501 LVQALRNG--------DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPP 561 (1856)
T ss_pred HHHHHHhC--------CEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCc
Confidence 99999999 9999997 45777899999999999999999999988888899999998764
No 10
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.81 E-value=3.1e-20 Score=230.57 Aligned_cols=320 Identities=12% Similarity=-0.006 Sum_probs=237.7
Q ss_pred ccccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCCCCCCCCCchhHHhhh
Q psy4730 1118 TIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLF 1197 (1513)
Q Consensus 1118 ~~~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~y~gr~~LP~nLk~lF 1197 (1513)
+.+..|+|| +||+|++++-++ +|+.-+..++..++.........-++-...|++.+|+|.|| |+++|+|+|..|
T Consensus 983 g~~~~~~~g-~~e~~~lde~~~-~i~~~~~~~~~~~~~~~~~~s~~~e~~~~sp~t~v~~~in~----r~~~~e~~~~a~ 1056 (3164)
T COG5245 983 GPICEEERG-TEESALLDEISR-TILVDEYLNSDEFRMLEELNSAVVEHGLKSPSTPVEMIINE----RNIVLEIGRRAL 1056 (3164)
T ss_pred cceehhhcc-chhHHHHHHHHH-HHhhhHHhcchHHHHHHHHHHHHHHcCCCCCCCceEEEecc----hhhHHHHHHHHH
Confidence 456689999 999999999999 77777777888888777666666677788999999999999 899999999999
Q ss_pred hcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhhhhhCCCChHHHHH
Q psy4730 1198 RSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIV 1277 (1513)
Q Consensus 1198 R~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l~~~~~~~~E~~~l 1277 (1513)
|.+.|-.| ...|++.. ++|+++|++|..+....++..+||-| |.++.+|+.+..+..+..+. +.. +
T Consensus 1057 ~~f~~~~p-~g~i~~~~---------~sl~~~i~~f~~~~~~~~~~~~~~~f--~~~~~~l~~~~~~l~e~~e~-~~~-i 1122 (3164)
T COG5245 1057 DMFLSNIP-FGAIKSRR---------ESLDREIGAFNNEVDGIAREEDELMF--YPMFKSLKAKHRMLEEKTEY-LNK-I 1122 (3164)
T ss_pred HHHHhcCC-chhHHHHH---------HHHHHHHHHHHHHhhhhhcccchhhh--HHHHHHHhhcchHHHHhhHH-HHH-H
Confidence 99999999 88888763 78999999999999999999999998 99999999988776554332 111 2
Q ss_pred HHHHHhhcCCCCcccchhhHHHHhhccCCCCCCCCCCchHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHhcceEEEe
Q psy4730 1278 LRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVV 1357 (1513)
Q Consensus 1278 ~~ai~~~~~pkl~~~d~~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~gvilv 1357 (1513)
+.. .-+|.+... +.+. .|.|.... .+-..........+.-+-.|+.+.. |+ ..|.+..+...-+++
T Consensus 1123 ~~~---~~lp~i~dt----l~e~-~~~~da~~-~~~~~~s~~~~~~~s~q~sg~~~a~-f~----~f~~~~~t~~~~~~~ 1188 (3164)
T COG5245 1123 LSI---TGLPLISDT----LRER-IDTLDAEW-DSFCRISESLKKYESQQVSGLDVAQ-FV----SFLRSVDTGAFHAEY 1188 (3164)
T ss_pred HHH---hCCCchhHH----HHHH-HHHHhhcC-CchhHHHHHHHHHhhccccCccHHH-HH----HHHHHhhhcHHHHHH
Confidence 222 124544332 1111 23332110 0001111122222333344555443 44 488899999999999
Q ss_pred ccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhccC-CCC
Q psy4730 1358 GESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVST-TPD 1436 (1513)
Q Consensus 1358 G~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~~-~~~ 1436 (1513)
|..|+|||..|+.....+... ...+++. + ++| ++-||+ |+|+.+.|+-.... ...
T Consensus 1189 ~~~~~~k~~~~~~~~d~~~h~------------~~~yv~~-------~---~~~-a~~e~r-~~f~~~~r~d~~~~~~~s 1244 (3164)
T COG5245 1189 FRVFLCKIKHYTDACDYLWHV------------KSPYVKK-------K---YFD-ADMELR-QFFLMFNREDMEARLADS 1244 (3164)
T ss_pred HHHhhcccchhhhhhcccccc------------CchhhHH-------H---Hhh-hhHHHH-HHHHHHhHHhhhhhhccc
Confidence 999999999999877654431 1123333 2 344 678999 99999999755433 457
Q ss_pred ceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCCCCcc
Q psy4730 1437 RKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISW 1510 (1513)
Q Consensus 1437 ~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~~~~w 1510 (1513)
+-|++||. ++|.+|+++||||.+++|+||+ +++|| ||. .+||||+||++-|.+..-.+.
T Consensus 1245 ~~~~~~~~-----yve~~~a~~~~~kl~~~~~ge~-------~v~~~--nl~-s~~~~v~rc~~~~ds~~~~St 1303 (3164)
T COG5245 1245 KMEYEVER-----YVEKTKAEVSSLKLELSSVGEG-------QVVVS--NLG-SIGDKVGRCLVEYDSISRLST 1303 (3164)
T ss_pred eEEEehHH-----HHHHHHhhhccceeeeccCCCc-------eEEEe--eCC-Cccchhheeeeeecccchhcc
Confidence 79999997 8899999999999999999999 89999 888 889999999999988766543
No 11
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.46 E-value=7.1e-13 Score=152.75 Aligned_cols=130 Identities=23% Similarity=0.200 Sum_probs=101.0
Q ss_pred cCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhcccccc-----ccceEEecCceEEEEEecCC-CCCCCCCchhHH
Q psy4730 1121 FPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMF-----EGTEISLNPTSMIFITMNPG-YAGRTELPDNLK 1194 (1513)
Q Consensus 1121 ~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~-----~g~~i~~~p~~~iFiTmNp~-y~gr~~LP~nLk 1194 (1513)
..|.|+++||+|++++++.+.+.+. +..+ .+.. .++.+.+||+|++++|+||. |.|..++|++|+
T Consensus 104 ~~g~~lllDEi~r~~~~~q~~Ll~~-------Le~~--~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~ 174 (262)
T TIGR02640 104 REGFTLVYDEFTRSKPETNNVLLSV-------FEEG--VLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALL 174 (262)
T ss_pred HcCCEEEEcchhhCCHHHHHHHHHH-------hcCC--eEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHH
Confidence 3789999999999999998766443 3322 1111 23568899999999999995 999999999999
Q ss_pred hhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhh
Q psy4730 1195 VLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSL 1264 (1513)
Q Consensus 1195 ~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l 1264 (1513)
.+|..+.+..||...-.++.. .+|..+..++++++.++..++ +...++..|.|..-.+.+.+...
T Consensus 175 ~R~~~i~i~~P~~~~e~~Il~--~~~~~~~~~~~~iv~~~~~~R---~~~~~~~~~~r~~i~~~~~~~~~ 239 (262)
T TIGR02640 175 DRLITIFMDYPDIDTETAILR--AKTDVAEDSAATIVRLVREFR---ASGDEITSGLRASLMIAEVATQQ 239 (262)
T ss_pred hhcEEEECCCCCHHHHHHHHH--HhhCCCHHHHHHHHHHHHHHH---hhCCccCCcHHHHHHHHHHHHHc
Confidence 999999999999877666654 345678889999999999988 34567788988776665555443
No 12
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.38 E-value=7.1e-13 Score=137.94 Aligned_cols=124 Identities=27% Similarity=0.337 Sum_probs=98.7
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC-CChhhccccccC--CCCCCccCHHHHHHHHh
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS-ITMGQLYGEFDS--ASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~-~t~~eL~G~~~~--~t~eW~DG~l~~~lR~~ 1429 (1513)
+|||+||||||||++++.+++.++. .+..++..+ .+..+|+|.+++ ...+|.||.+.+++++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~--------------~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~ 66 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR--------------PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKG 66 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC--------------EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc--------------ceEEEEeccccccccceeeeeecccccccccccccccccce
Confidence 6999999999999999999999842 445555555 779999999997 44569999999999977
Q ss_pred hccCCCCceEEEEcCCC--ChHHHHhhhcccCCCCceeecCCCeeecCCC------CeEEEeecCCC----CCCcchhhc
Q psy4730 1430 AVSTTPDRKWIMFDGPI--DAVWIENMNTVLDDNKKLCLINGEIIKMSNT------MNLIFECENLE----FASPATVSR 1497 (1513)
Q Consensus 1430 ~~~~~~~~~WivfDG~~--d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~------~~~iFE~~~l~----~asPatvsR 1497 (1513)
.|+++|+.- ++.+++.|+++||+++......++.+..+++ +++|+.+.+-. ..+||+.+|
T Consensus 67 --------~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~R 138 (139)
T PF07728_consen 67 --------GILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDR 138 (139)
T ss_dssp --------EEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT
T ss_pred --------eEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhh
Confidence 999999644 8999999999999887776666777877764 88888887776 899999999
Q ss_pred c
Q psy4730 1498 V 1498 (1513)
Q Consensus 1498 c 1498 (1513)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 7
No 13
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.37 E-value=8.3e-12 Score=144.40 Aligned_cols=173 Identities=18% Similarity=0.198 Sum_probs=127.5
Q ss_pred ccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhcccccc-ccceEEecCceEEEEEecC-C-------CCCCCCCc
Q psy4730 1120 IFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMF-EGTEISLNPTSMIFITMNP-G-------YAGRTELP 1190 (1513)
Q Consensus 1120 ~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~-~g~~i~~~p~~~iFiTmNp-~-------y~gr~~LP 1190 (1513)
++.|.|+++||||++++++++++ ++++..+...... .++.|..||.|++|+|+|| | |.|...||
T Consensus 132 ~~~g~illlDEin~a~p~~~~~L-------~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~ 204 (327)
T TIGR01650 132 LQHNVALCFDEYDAGRPDVMFVI-------QRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQIN 204 (327)
T ss_pred HhCCeEEEechhhccCHHHHHHH-------HHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCC
Confidence 34899999999999999999776 4444443333333 3678889999999999999 4 99999999
Q ss_pred hhHHhhhhcc-cccCCChHHHHHHHHHh-cCcc--chHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhhhh
Q psy4730 1191 DNLKVLFRSV-AMMVPDYAMIGEISLYS-MGFQ--NAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKI 1266 (1513)
Q Consensus 1191 ~nLk~lFR~v-~~~~PD~~~I~ei~L~~-~GF~--~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l~~ 1266 (1513)
+++..+|.-+ .|.-|+...-.++.... .|+. .+..+.++++.+-...++.+-.. .... --+.+.+++++.....
T Consensus 205 ~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~-~i~~-~~SpR~li~w~~~~~~ 282 (327)
T TIGR01650 205 QAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFING-DIST-VMSPRTVITWAENAEI 282 (327)
T ss_pred HHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccC-Cccc-cccHHHHHHHHHHHHh
Confidence 9999999864 78888887766666543 3543 25678889999888888754221 1111 1245667777765433
Q ss_pred hCCCChHHHHHHHHHHhhcCCCCcccchhhHHHHhhccCCC
Q psy4730 1267 KYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPG 1307 (1513)
Q Consensus 1267 ~~~~~~E~~~l~~ai~~~~~pkl~~~d~~lf~~li~~~Fp~ 1307 (1513)
-.. -+..|++..++-|-...+.+...++...+|+.
T Consensus 283 f~~------~~~~a~~~~~~n~~~~~er~~~~e~~q~~f~~ 317 (327)
T TIGR01650 283 FDH------DIALAFRLTFLNKCDELERPTVAEFFQRAFGE 317 (327)
T ss_pred hCc------cHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCC
Confidence 211 37889999999999999999999999999974
No 14
>PHA02244 ATPase-like protein
Probab=99.24 E-value=4.4e-11 Score=139.45 Aligned_cols=145 Identities=14% Similarity=0.201 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCC
Q psy4730 1335 DWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSAS 1414 (1513)
Q Consensus 1335 ~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t 1414 (1513)
+.+......+-+.+..+.+|+|.||||||||++++.++..++ ..++.+| ..++..++.|..+. .
T Consensus 103 p~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg--------------~pfv~In-~l~d~~~L~G~i~~-~ 166 (383)
T PHA02244 103 PTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD--------------LDFYFMN-AIMDEFELKGFIDA-N 166 (383)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEe-cChHHHhhcccccc-c
Confidence 344445556667788899999999999999999999998864 3456666 22345567886654 4
Q ss_pred CCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC-----
Q psy4730 1415 HEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL----- 1487 (1513)
Q Consensus 1415 ~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l----- 1487 (1513)
+.|.||.|.++++++ .|+++| +.++++....||++||+. .+.++ |+++..++++++|+-....
T Consensus 167 g~~~dgpLl~A~~~G--------gvLiLDEId~a~p~vq~~L~~lLd~r-~l~l~-g~~i~~h~~FRlIATsN~~~~G~~ 236 (383)
T PHA02244 167 GKFHETPFYEAFKKG--------GLFFIDEIDASIPEALIIINSAIANK-FFDFA-DERVTAHEDFRVISAGNTLGKGAD 236 (383)
T ss_pred ccccchHHHHHhhcC--------CEEEEeCcCcCCHHHHHHHHHHhccC-eEEec-CcEEecCCCEEEEEeeCCCccCcc
Confidence 589999999999988 899999 556899999999999875 66665 7889999999988866542
Q ss_pred ------CCCCcchhhccEEEEeeC
Q psy4730 1488 ------EFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1488 ------~~asPatvsRcg~v~~~~ 1505 (1513)
...+||+++|+..|+++-
T Consensus 237 ~~y~G~k~L~~AllDRFv~I~~dy 260 (383)
T PHA02244 237 HIYVARNKIDGATLDRFAPIEFDY 260 (383)
T ss_pred cccCCCcccCHHHHhhcEEeeCCC
Confidence 557899999999998874
No 15
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.22 E-value=1.5e-09 Score=140.36 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=86.8
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC----CChhhccccccCCCCCCccCHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS----ITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~----~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
.++++||||||||++.+.||+.++. .+.++|... .+...|+|.-..-.+....|.|+.++|+
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~--------------~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~ 555 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGI--------------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK 555 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--------------CcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHh
Confidence 6899999999999999999998842 234444433 3478899852111122456899998886
Q ss_pred hhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC------------------
Q psy4730 1429 MAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE------------------ 1488 (1513)
Q Consensus 1429 ~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~------------------ 1488 (1513)
. ...-++|| .-+++.....|-.+||+ +.++-..|..+.+. |+-+|+- +|+.
T Consensus 556 ~------p~sVlllDEieka~~~v~~~LLq~ld~-G~ltd~~g~~vd~r-n~iiI~T-sN~g~~~~~~~~~g~~~~~~~~ 626 (758)
T PRK11034 556 H------PHAVLLLDEIEKAHPDVFNLLLQVMDN-GTLTDNNGRKADFR-NVVLVMT-TNAGVRETERKSIGLIHQDNST 626 (758)
T ss_pred C------CCcEEEeccHhhhhHHHHHHHHHHHhc-CeeecCCCceecCC-CcEEEEe-CCcCHHHHhhcccCcccchhhH
Confidence 4 23679999 46688888899999976 46676667766543 3334443 3432
Q ss_pred --------CCCcchhhccE-EEEeeC
Q psy4730 1489 --------FASPATVSRVG-MIYFEL 1505 (1513)
Q Consensus 1489 --------~asPatvsRcg-~v~~~~ 1505 (1513)
...|..+.|+- +|.|.|
T Consensus 627 ~~~~~~~~~f~pefl~Rid~ii~f~~ 652 (758)
T PRK11034 627 DAMEEIKKIFTPEFRNRLDNIIWFDH 652 (758)
T ss_pred HHHHHHHHhcCHHHHccCCEEEEcCC
Confidence 24488888884 666654
No 16
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.18 E-value=1.8e-09 Score=141.71 Aligned_cols=111 Identities=20% Similarity=0.237 Sum_probs=74.5
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecC----CCCChhhccccccCCCCCC-ccCHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINP----KSITMGQLYGEFDSASHEW-RDGILAKTFR 1427 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp----~~~t~~eL~G~~~~~t~eW-~DG~l~~~lR 1427 (1513)
.++++||||+|||++.+.|++.++. ...+++- ...+...|+|.... --++ ..|.++.++|
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~--------------~~~~~d~se~~~~~~~~~lig~~~g-yvg~~~~~~l~~~~~ 550 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGV--------------HLERFDMSEYMEKHTVSRLIGAPPG-YVGFEQGGLLTEAVR 550 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcC--------------CeEEEeCchhhhcccHHHHhcCCCC-CcccchhhHHHHHHH
Confidence 4799999999999999999998842 2334432 23345667765311 0112 3568888888
Q ss_pred HhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC
Q psy4730 1428 EMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL 1487 (1513)
Q Consensus 1428 ~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l 1487 (1513)
+. ...-++|| ..++|.....|-.+||+. .++-..|..+.+. ++-+|+ |+|+
T Consensus 551 ~~------p~~VvllDEieka~~~~~~~Ll~~ld~g-~~~d~~g~~vd~~-~~iii~-Tsn~ 603 (731)
T TIGR02639 551 KH------PHCVLLLDEIEKAHPDIYNILLQVMDYA-TLTDNNGRKADFR-NVILIM-TSNA 603 (731)
T ss_pred hC------CCeEEEEechhhcCHHHHHHHHHhhccC-eeecCCCcccCCC-CCEEEE-CCCc
Confidence 54 23799999 577899999999999864 5676667777655 333333 5544
No 17
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.18 E-value=1.8e-10 Score=132.92 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=114.1
Q ss_pred ccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCC-CCChhhcccccc
Q psy4730 1333 ATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK-SITMGQLYGEFD 1411 (1513)
Q Consensus 1333 ~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~-~~t~~eL~G~~~ 1411 (1513)
.++.+..-.-++...+..+.+|+|.||||||||++.+.|++.++. .+..++.. .++..+|+|.+.
T Consensus 3 ~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~--------------~~~~i~~~~~~~~~dllg~~~ 68 (262)
T TIGR02640 3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDR--------------PVMLINGDAELTTSDLVGSYA 68 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCC--------------CEEEEeCCccCCHHHHhhhhc
Confidence 344445555566677888999999999999999999999986542 33444443 445678888754
Q ss_pred C--------------------CCCCCccCHHHHHHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecC-
Q psy4730 1412 S--------------------ASHEWRDGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLIN- 1468 (1513)
Q Consensus 1412 ~--------------------~t~eW~DG~l~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~n- 1468 (1513)
. ....|.||.+..+++++ .|+++|+ -++++....|+++|++ +.+++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g--------~~lllDEi~r~~~~~q~~Ll~~Le~-~~~~i~~~ 139 (262)
T TIGR02640 69 GYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREG--------FTLVYDEFTRSKPETNNVLLSVFEE-GVLELPGK 139 (262)
T ss_pred ccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcC--------CEEEEcchhhCCHHHHHHHHHHhcC-CeEEccCC
Confidence 2 12369999999999876 8999995 5688999999999986 6889986
Q ss_pred ---CCeeecCCCCeEEEeecCCC-----CCCcchhhccEEEEeeC
Q psy4730 1469 ---GEIIKMSNTMNLIFECENLE-----FASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1469 ---Ge~i~~~~~~~~iFE~~~l~-----~asPatvsRcg~v~~~~ 1505 (1513)
|+.++.+|++++|+-+..-. ..++|...||..++++-
T Consensus 140 ~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~ 184 (262)
T TIGR02640 140 RGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDY 184 (262)
T ss_pred CCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCC
Confidence 46688999999888554332 34789999999888765
No 18
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.17 E-value=4.3e-08 Score=129.65 Aligned_cols=133 Identities=22% Similarity=0.235 Sum_probs=91.4
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCC----CCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK----SITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~----~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
.++++||||+|||.+.+.|++.+-. . ...+.++|-. ..+...|+|.--.--+.=..|.|+..+|+
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~--~---------~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~ 666 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYG--G---------EQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR 666 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhC--C---------CcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh
Confidence 3799999999999999999998742 0 0133445432 33455666631000011146899999986
Q ss_pred hhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC-------------------
Q psy4730 1429 MAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL------------------- 1487 (1513)
Q Consensus 1429 ~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l------------------- 1487 (1513)
. ...-|+|| ..++|...+.|-.+||+. .|+-+.|..+.+.+ .-+|+- +|+
T Consensus 667 ~------p~svvllDEieka~~~v~~~Llq~ld~g-~l~d~~Gr~vd~~n-~iiI~T-SNlg~~~~~~~~~~~~~~~~~~ 737 (852)
T TIGR03345 667 K------PYSVVLLDEVEKAHPDVLELFYQVFDKG-VMEDGEGREIDFKN-TVILLT-SNAGSDLIMALCADPETAPDPE 737 (852)
T ss_pred C------CCcEEEEechhhcCHHHHHHHHHHhhcc-eeecCCCcEEeccc-cEEEEe-CCCchHHHHHhccCcccCcchH
Confidence 3 23689999 688999999999999875 57878898888774 445543 333
Q ss_pred -----------CCCCcchhhccEEEEeeC
Q psy4730 1488 -----------EFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1488 -----------~~asPatvsRcg~v~~~~ 1505 (1513)
..-.|+.++||-+|.|.|
T Consensus 738 ~~~~~~~~~~~~~f~PEflnRi~iI~F~p 766 (852)
T TIGR03345 738 ALLEALRPELLKVFKPAFLGRMTVIPYLP 766 (852)
T ss_pred HHHHHHHHHHHHhccHHHhcceeEEEeCC
Confidence 125689999999888875
No 19
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.15 E-value=1.5e-10 Score=133.99 Aligned_cols=134 Identities=22% Similarity=0.256 Sum_probs=103.4
Q ss_pred HHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC-CChhhccccccC---CC---CCCc
Q psy4730 1346 EMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS-ITMGQLYGEFDS---AS---HEWR 1418 (1513)
Q Consensus 1346 ~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~-~t~~eL~G~~~~---~t---~eW~ 1418 (1513)
..+..+..|+|.|+|||||||+++.||+.++. .+.+|+... ++..+|.|..-. .+ .+|.
T Consensus 59 ~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~--------------~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~ 124 (327)
T TIGR01650 59 AGFAYDRRVMVQGYHGTGKSTHIEQIAARLNW--------------PCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFR 124 (327)
T ss_pred HHHhcCCcEEEEeCCCChHHHHHHHHHHHHCC--------------CeEEEEecCCCChhhcCCCceeeccCCcceeEEe
Confidence 34556789999999999999999999999874 334454433 557889997422 11 3799
Q ss_pred cCHHHHHHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecC-CCeeecCCCCeEEEeecCCC-------
Q psy4730 1419 DGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLIN-GEIIKMSNTMNLIFECENLE------- 1488 (1513)
Q Consensus 1419 DG~l~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~n-Ge~i~~~~~~~~iFE~~~l~------- 1488 (1513)
||.|+.++|.+ .|++||. -++|.....||++||+.+.|++++ |+.|+.+|++++|.-.....
T Consensus 125 ~GpL~~A~~~g--------~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~ 196 (327)
T TIGR01650 125 DGILPWALQHN--------VALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGL 196 (327)
T ss_pred cCcchhHHhCC--------eEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcc
Confidence 99999999987 9999994 558899999999999999999986 67777777766655443332
Q ss_pred -----CCCcchhhccEEE
Q psy4730 1489 -----FASPATVSRVGMI 1501 (1513)
Q Consensus 1489 -----~asPatvsRcg~v 1501 (1513)
...+|+..|..++
T Consensus 197 y~Gt~~l~~A~lDRF~i~ 214 (327)
T TIGR01650 197 YHGTQQINQAQMDRWSIV 214 (327)
T ss_pred eeeeecCCHHHHhheeeE
Confidence 1358999999876
No 20
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.99 E-value=2.2e-07 Score=123.60 Aligned_cols=110 Identities=19% Similarity=0.271 Sum_probs=70.2
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC----CChhhccccccCCCCCCcc-CHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS----ITMGQLYGEFDSASHEWRD-GILAKTFR 1427 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~----~t~~eL~G~~~~~t~eW~D-G~l~~~lR 1427 (1513)
.++++||||+|||++.+.||+.+-.- ...+.+++-.. .+...|+|.- |.--+..+ |.|+..+|
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~-----------~~~~~~~d~s~~~~~~~~~~l~g~~-~gyvg~~~~~~l~~~~~ 608 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGS-----------EDAMIRLDMSEYMEKHTVSKLIGSP-PGYVGYNEGGQLTEAVR 608 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCC-----------ccceEEEEchhccccccHHHhcCCC-CcccCcCccchHHHHHH
Confidence 47899999999999999999887421 12234444322 3455666641 11112333 67888887
Q ss_pred HhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730 1428 EMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus 1428 ~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
+.. ..-|+|| .-+++.....|-.+||+. .++-+.|..+.+. ++-+|+
T Consensus 609 ~~p------~~VvllDeieka~~~v~~~Llq~le~g-~~~d~~g~~v~~~-~~i~I~ 657 (821)
T CHL00095 609 KKP------YTVVLFDEIEKAHPDIFNLLLQILDDG-RLTDSKGRTIDFK-NTLIIM 657 (821)
T ss_pred hCC------CeEEEECChhhCCHHHHHHHHHHhccC-ceecCCCcEEecC-ceEEEE
Confidence 642 3789999 467888888888888654 5666677777664 333443
No 21
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.98 E-value=1.8e-07 Score=124.30 Aligned_cols=132 Identities=21% Similarity=0.295 Sum_probs=85.4
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC----CChhhccccccCCCCCCc-cCHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS----ITMGQLYGEFDSASHEWR-DGILAKTFR 1427 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~----~t~~eL~G~~~~~t~eW~-DG~l~~~lR 1427 (1513)
.++++||||+|||++.++|++.+..-. ..+..++... .+...|+|.- |...+.. .|.++..+|
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~-----------~~~i~id~se~~~~~~~~~LiG~~-pgy~g~~~~g~l~~~v~ 667 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSD-----------DAMVRIDMSEFMEKHSVSRLVGAP-PGYVGYEEGGYLTEAVR 667 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCC-----------CcEEEEEhHHhhhhhhHHHHhCCC-CcccccchhHHHHHHHH
Confidence 589999999999999999998774210 1233444333 3467788842 1111222 367777777
Q ss_pred HhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC------------------
Q psy4730 1428 EMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL------------------ 1487 (1513)
Q Consensus 1428 ~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l------------------ 1487 (1513)
.. ...-++|| +.+++.....|-.+||+. .++-..|..+.+.+ .-+|+ |+|+
T Consensus 668 ~~------p~~vLllDEieka~~~v~~~Ll~ile~g-~l~d~~gr~vd~rn-~iiI~-TSN~g~~~~~~~~~~~~~~~~~ 738 (857)
T PRK10865 668 RR------PYSVILLDEVEKAHPDVFNILLQVLDDG-RLTDGQGRTVDFRN-TVVIM-TSNLGSDLIQERFGELDYAHMK 738 (857)
T ss_pred hC------CCCeEEEeehhhCCHHHHHHHHHHHhhC-ceecCCceEEeecc-cEEEE-eCCcchHHHHHhccccchHHHH
Confidence 53 12588999 677888888888888776 44555677776653 33333 5555
Q ss_pred --------CCCCcchhhcc-EEEEeeC
Q psy4730 1488 --------EFASPATVSRV-GMIYFEL 1505 (1513)
Q Consensus 1488 --------~~asPatvsRc-g~v~~~~ 1505 (1513)
..-.|+.++|+ .+|.|.|
T Consensus 739 ~~~~~~~~~~f~PELlnRld~iivF~P 765 (857)
T PRK10865 739 ELVLGVVSHNFRPEFINRIDEVVVFHP 765 (857)
T ss_pred HHHHHHHcccccHHHHHhCCeeEecCC
Confidence 23468899999 6666655
No 22
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.85 E-value=5.7e-06 Score=110.62 Aligned_cols=115 Identities=22% Similarity=0.274 Sum_probs=75.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC----CChhhccccccCCCCCC-ccCHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS----ITMGQLYGEFDSASHEW-RDGILAKTF 1426 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~----~t~~eL~G~~~~~t~eW-~DG~l~~~l 1426 (1513)
..++++||||+|||++.+.|++.+..- ...+.++|... .....|+|.- |.-.+. ..|.|+..+
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~-----------~~~~i~~d~s~~~~~~~~~~l~g~~-~g~~g~~~~g~l~~~v 663 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDD-----------EDAMVRIDMSEYMEKHSVARLIGAP-PGYVGYEEGGQLTEAV 663 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCC-----------CCcEEEEechhhcccchHHHhcCCC-CCccCcccccHHHHHH
Confidence 468999999999999999999887421 12344555433 3355666642 111122 247888888
Q ss_pred HHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC
Q psy4730 1427 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL 1487 (1513)
Q Consensus 1427 R~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l 1487 (1513)
|+.. ..-++|| +.+++.....|-.+||+. .++-..|..+.+. |+-+| =|+|+
T Consensus 664 ~~~p------~~vlllDeieka~~~v~~~Ll~~l~~g-~l~d~~g~~vd~r-n~iiI-~TSn~ 717 (852)
T TIGR03346 664 RRKP------YSVVLFDEVEKAHPDVFNVLLQVLDDG-RLTDGQGRTVDFR-NTVII-MTSNL 717 (852)
T ss_pred HcCC------CcEEEEeccccCCHHHHHHHHHHHhcC-ceecCCCeEEecC-CcEEE-EeCCc
Confidence 7531 2579999 678898888888888765 4566667777765 33344 45555
No 23
>PHA02244 ATPase-like protein
Probab=98.66 E-value=1.3e-07 Score=110.97 Aligned_cols=113 Identities=24% Similarity=0.256 Sum_probs=75.1
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeec-ceEEEEeecCC----------CCCCChhhhccceE
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLV-DIIYITAMIPT----------MNTITGRLLRHMNI 957 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~-~~~~~~a~~~~----------~~~~~~r~~~~f~~ 957 (1513)
+++||++...++ ++..|..+++++ ++++.+- .+..| ++++|+|+||+ ++.+++.++.||..
T Consensus 184 LiLDEId~a~p~------vq~~L~~lLd~r-~l~l~g~-~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~ 255 (383)
T PHA02244 184 FFIDEIDASIPE------ALIIINSAIANK-FFDFADE-RVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAP 255 (383)
T ss_pred EEEeCcCcCCHH------HHHHHHHHhccC-eEEecCc-EEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEE
Confidence 446999977755 778899999876 4554432 34344 99999999993 58899999999999
Q ss_pred eecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhh
Q psy4730 958 ISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGL 1033 (1513)
Q Consensus 958 ~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~ 1033 (1513)
+.+++|+.... .|- .. .+... ++++.....+ .-..-.+.||+|++-++.++.
T Consensus 256 I~~dyp~~~E~-~i~-~~---------~~~lv----~~a~~lR~~~---------~~~~l~~~~StR~li~~a~~~ 307 (383)
T PHA02244 256 IEFDYDEKIEH-LIS-NG---------DEDLV----NFVALLRHEM---------AEKGLDHVFSMRAIIHGKKFD 307 (383)
T ss_pred eeCCCCcHHHH-HHh-hh---------HHHHH----HHHHHHHHHH---------hcCCCCccccHHHHHHHHHhh
Confidence 99999984222 221 10 01111 1222222222 124566899999999998875
No 24
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.65 E-value=1.6e-08 Score=105.29 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=42.7
Q ss_pred HhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeec-------ceEEEEeecCC---CCCCChhhhccc
Q psy4730 890 ILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLV-------DIIYITAMIPT---MNTITGRLLRHM 955 (1513)
Q Consensus 890 ~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~-------~~~~~~a~~~~---~~~~~~r~~~~f 955 (1513)
++||+|.+..+ +++.|..+++.+.+.-.........+ ++.+||+|||. ++.+++.|++||
T Consensus 70 ~lDEin~a~~~------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 70 VLDEINRAPPE------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EESSCGG--HH------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred EECCcccCCHH------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 35999987755 89999999998877644333333333 39999999997 489999999998
No 25
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=6.3e-06 Score=104.97 Aligned_cols=113 Identities=22% Similarity=0.292 Sum_probs=79.3
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCC----CCChhhccccccCCCC-CC-ccCHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK----SITMGQLYGEFDSASH-EW-RDGILAKTF 1426 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~----~~t~~eL~G~~~~~t~-eW-~DG~l~~~l 1426 (1513)
..+++||||+|||-+.+.||..+..= .....++|-. .+|.+.|.|. |.+. ++ .=|.||.++
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~-----------e~aliR~DMSEy~EkHsVSrLIGa--PPGYVGyeeGG~LTEaV 589 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGD-----------EQALIRIDMSEYMEKHSVSRLIGA--PPGYVGYEEGGQLTEAV 589 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCC-----------CccceeechHHHHHHHHHHHHhCC--CCCCceeccccchhHhh
Confidence 45679999999999999999998620 1234555433 3446777773 1111 11 258999999
Q ss_pred HHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC
Q psy4730 1427 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL 1487 (1513)
Q Consensus 1427 R~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l 1487 (1513)
|+- -..-|+|| -=.+|.+..-|=.||||. .||=+.|-.+-+.+. +|+=|+|+
T Consensus 590 Rr~------PySViLlDEIEKAHpdV~nilLQVlDdG-rLTD~~Gr~VdFrNt--iIImTSN~ 643 (786)
T COG0542 590 RRK------PYSVILLDEIEKAHPDVFNLLLQVLDDG-RLTDGQGRTVDFRNT--IIIMTSNA 643 (786)
T ss_pred hcC------CCeEEEechhhhcCHHHHHHHHHHhcCC-eeecCCCCEEeccee--EEEEeccc
Confidence 974 23689999 456888999999999876 688888988888743 44445555
No 26
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.52 E-value=2.2e-07 Score=92.73 Aligned_cols=64 Identities=22% Similarity=0.297 Sum_probs=42.9
Q ss_pred cccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecC-CCCCCCCCchhHHhhh
Q psy4730 1125 WACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNP-GYAGRTELPDNLKVLF 1197 (1513)
Q Consensus 1125 W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp-~y~gr~~LP~nLk~lF 1197 (1513)
+..+||+||.++.+.|++-+.++ ...+..+|...++...|.+++|+|| .+.|..+||+.+..+|
T Consensus 65 ill~DEiNrappktQsAlLeam~---------Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 65 ILLADEINRAPPKTQSALLEAME---------ERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp EEEEETGGGS-HHHHHHHHHHHH---------HSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred eeeecccccCCHHHHHHHHHHHH---------cCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 56789999999999988855433 2467788999999999999999999 6899999999999887
No 27
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.42 E-value=1.6e-06 Score=103.81 Aligned_cols=108 Identities=25% Similarity=0.300 Sum_probs=77.0
Q ss_pred cccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccce-EEecCceEEEEEecCC-CCCCCCCchhHHhhh-hccc
Q psy4730 1125 WACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTE-ISLNPTSMIFITMNPG-YAGRTELPDNLKVLF-RSVA 1201 (1513)
Q Consensus 1125 W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~-i~~~p~~~iFiTmNp~-y~gr~~LP~nLk~lF-R~v~ 1201 (1513)
-+.+||+||.++++.+++-+. +... .+...|.. +.+++.|.+.+|+||+ |.|..+||+.++.+| -.+.
T Consensus 115 ill~DEInra~p~~q~aLl~~-------l~e~--~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~ 185 (329)
T COG0714 115 ILLLDEINRAPPEVQNALLEA-------LEER--QVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIY 185 (329)
T ss_pred EEEEeccccCCHHHHHHHHHH-------HhCc--EEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEe
Confidence 568999999999999877443 3333 34445555 9999999999999995 889999999999999 8888
Q ss_pred ccCCChHH-HHHHHHHhcCccc--hHHHHHHHHHHHHHHHhhc
Q psy4730 1202 MMVPDYAM-IGEISLYSMGFQN--AKILAEKIVYTYKLCSEQL 1241 (1513)
Q Consensus 1202 ~~~PD~~~-I~ei~L~~~GF~~--a~~la~ki~~~~~l~~~~l 1241 (1513)
+.-|+... ...+.....|... .....+.++......+.+.
T Consensus 186 v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 228 (329)
T COG0714 186 VDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQK 228 (329)
T ss_pred cCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHh
Confidence 88885544 4334444444332 4556666766666655443
No 28
>KOG0733|consensus
Probab=98.29 E-value=1.2e-05 Score=96.98 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=34.7
Q ss_pred ceEEEEeecCCCCCCChhhhc--cc-eEeecCCCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HM-NIISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f-~~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
.+..|||+|-|- .++|.|+| || +.|.+.-|+...-.+|.+.+.+++
T Consensus 329 ~VlVIgATnRPD-slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l 377 (802)
T KOG0733|consen 329 PVLVIGATNRPD-SLDPALRRAGRFDREICLGVPSETAREEILRIICRGL 377 (802)
T ss_pred CeEEEecCCCCc-ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC
Confidence 377889988662 36666664 45 459999999999999999887764
No 29
>KOG0736|consensus
Probab=98.27 E-value=2.7e-05 Score=96.48 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=60.0
Q ss_pred EEEeeeeccCCccceeecccchHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCCCCCCCCC
Q psy4730 626 TVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRP 705 (1513)
Q Consensus 626 ~~~YgyEY~G~~~rlV~Tplt~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~f~~~~~~ 705 (1513)
...|.|-+-.+...+|.|+.+.+-.-.+-..+...++. +.+-++++.+..+...+--+ ++|+..
T Consensus 363 ~~~~~~~i~~~~T~lv~~~~~ss~~~~lps~~~~l~n~----~~~~~~~~~~~~l~~vl~p~---~~~s~~--------- 426 (953)
T KOG0736|consen 363 GNESAYIIDTNHTSLVLVGATSSRVPLLPSSLSTLWNS----LSPPGLEAKVLELVAVLSPQ---KQPSGA--------- 426 (953)
T ss_pred CccceEEEcCCCceEEEccccccCCcCCChhhHHHhcc----CCCccchHHHHHHHHHhCcc---cCcchh---------
Confidence 56677777888889999998865411111222211121 24567777777777665543 344322
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730 706 SDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS 754 (1513)
Q Consensus 706 ~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~ 754 (1513)
.++.+-.+||.|+||||||+.|....+.+.
T Consensus 427 -------------------~~~~~~~vLLhG~~g~GK~t~V~~vas~lg 456 (953)
T KOG0736|consen 427 -------------------LLTLNPSVLLHGPPGSGKTTVVRAVASELG 456 (953)
T ss_pred -------------------ccccceEEEEeCCCCCChHHHHHHHHHHhC
Confidence 123445688999999999999999988764
No 30
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.25 E-value=5.8e-06 Score=99.81 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=106.1
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCC--CCCCccCH
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSA--SHEWRDGI 1421 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~--t~eW~DG~ 1421 (1513)
+..++..+..|++.||||+|||++.+.|+..+..-.. ...+...... ...+..++.|.+.|. +..|.+|+
T Consensus 187 l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~-------~~~v~~VtFH-psySYeDFI~G~rP~~vgy~~~~G~ 258 (459)
T PRK11331 187 ILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKA-------PQRVNMVQFH-QSYSYEDFIQGYRPNGVGFRRKDGI 258 (459)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcc-------cceeeEEeec-ccccHHHHhcccCCCCCCeEecCch
Confidence 4555667899999999999999999999987752100 0112222232 356677888777655 34589999
Q ss_pred HHHHHHHhhccCCCCceEEEEc----CCCChHHHHhhhcccCCCC-----ceeec----CCCeeecCCCCeEEEeec---
Q psy4730 1422 LAKTFREMAVSTTPDRKWIMFD----GPIDAVWIENMNTVLDDNK-----KLCLI----NGEIIKMSNTMNLIFECE--- 1485 (1513)
Q Consensus 1422 l~~~lR~~~~~~~~~~~WivfD----G~~d~~wiE~LNsvLDdn~-----~L~L~----nGe~i~~~~~~~~iFE~~--- 1485 (1513)
|.++.+++..+ ....+|+|+| |+++...=|- =++||..+ .+.|+ +++.+.+|+|+++|--+.
T Consensus 259 f~~~~~~A~~~-p~~~~vliIDEINRani~kiFGel-~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~D 336 (459)
T PRK11331 259 FYNFCQQAKEQ-PEKKYVFIIDEINRANLSKVFGEV-MMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTAD 336 (459)
T ss_pred HHHHHHHHHhc-ccCCcEEEEehhhccCHHHhhhhh-hhhccccccccccceeeeccccccccccCCCCeEEEEecCccc
Confidence 99998876543 3456999999 5555544444 45666432 23443 257899999999888773
Q ss_pred -CCCCCCcchhhccEEEEeeCC
Q psy4730 1486 -NLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1486 -~l~~asPatvsRcg~v~~~~~ 1506 (1513)
++....+|.--|...|.+.|.
T Consensus 337 rs~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 337 RSLAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred cchhhccHHHHhhhheEEecCC
Confidence 334688999999999999884
No 31
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.17 E-value=3.1e-06 Score=102.08 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=52.6
Q ss_pred HHHhhccCCCCCcc-CCCCChHHHHHHHHhcC--C-------ccccCCc-eeeeecceEEEEeecCC-CC--CCChhhhc
Q psy4730 888 EMILDDLNMPQKET-YGAQPAVELLRQIIDHK--H-------LYDFQTV-TRVDLVDIIYITAMIPT-MN--TITGRLLR 953 (1513)
Q Consensus 888 ~~~~dd~n~p~~~~-~~~q~~le~lr~~~~~~--~-------~yd~~~~-~~~~~~~~~~~~a~~~~-~~--~~~~r~~~ 953 (1513)
.+++||+|.+..++ +|.. .+++|++ | .|+.++. .+....|+.++||||.. |. .++..|+|
T Consensus 275 vliIDEINRani~kiFGel------~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR 348 (459)
T PRK11331 275 VFIIDEINRANLSKVFGEV------MMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR 348 (459)
T ss_pred EEEEehhhccCHHHhhhhh------hhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh
Confidence 46789999999885 5654 6677753 2 3544432 45566799999999998 43 69999999
Q ss_pred cceEeecCCC
Q psy4730 954 HMNIISIDSF 963 (1513)
Q Consensus 954 ~f~~~~~~~~ 963 (1513)
||..+.+.+.
T Consensus 349 RF~fi~i~p~ 358 (459)
T PRK11331 349 RFSFIDIEPG 358 (459)
T ss_pred hhheEEecCC
Confidence 9999988873
No 32
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.14 E-value=3e-05 Score=102.70 Aligned_cols=122 Identities=18% Similarity=0.307 Sum_probs=68.8
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
.+||+|+||||||||++.+++|..++ ..+..+.+ .++++.|--.+ +..+..+++.+.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~--------------~~fi~v~~-----~~l~~~~vGes----e~~i~~~f~~A~ 543 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESG--------------ANFIAVRG-----PEILSKWVGES----EKAIREIFRKAR 543 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC--------------CCEEEEeh-----HHHhhcccCcH----HHHHHHHHHHHH
Confidence 46999999999999999999987754 23344443 34444332111 123444554442
Q ss_pred ccCCCCceEEEEcCC----------CChHHHHh-hhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh--hc
Q psy4730 1431 VSTTPDRKWIMFDGP----------IDAVWIEN-MNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV--SR 1497 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG~----------~d~~wiE~-LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv--sR 1497 (1513)
. ....-|+||.- .+....++ +|.+| +..+| +.-..++.+|.-|.....+-||.. +|
T Consensus 544 ~---~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL------~~ldg--~~~~~~v~vI~aTn~~~~ld~allRpgR 612 (733)
T TIGR01243 544 Q---AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLL------TEMDG--IQELSNVVVIAATNRPDILDPALLRPGR 612 (733)
T ss_pred h---cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHH------HHhhc--ccCCCCEEEEEeCCChhhCCHhhcCCCc
Confidence 2 23478888841 11111111 22222 11122 222456778888888888889888 58
Q ss_pred cE-EEEeeCC
Q psy4730 1498 VG-MIYFELK 1506 (1513)
Q Consensus 1498 cg-~v~~~~~ 1506 (1513)
+. .||++.-
T Consensus 613 fd~~i~v~~P 622 (733)
T TIGR01243 613 FDRLILVPPP 622 (733)
T ss_pred cceEEEeCCc
Confidence 85 4555543
No 33
>KOG0730|consensus
Probab=98.06 E-value=7.2e-05 Score=91.99 Aligned_cols=128 Identities=23% Similarity=0.305 Sum_probs=74.3
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
--.||+++||||||||++.+++|..-+ +|--++.-.|||-.|.-. .+-.+-.++|++
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~-------------------~nFlsvkgpEL~sk~vGe----SEr~ir~iF~kA 523 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAG-------------------MNFLSVKGPELFSKYVGE----SERAIREVFRKA 523 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhc-------------------CCeeeccCHHHHHHhcCc----hHHHHHHHHHHH
Confidence 346999999999999999999985533 333445555555544322 122344555555
Q ss_pred hccCCCCceEEEEcCCCChHHHHh-------hhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh--c-cE
Q psy4730 1430 AVSTTPDRKWIMFDGPIDAVWIEN-------MNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS--R-VG 1499 (1513)
Q Consensus 1430 ~~~~~~~~~WivfDG~~d~~wiE~-------LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs--R-cg 1499 (1513)
.+. ....|.||. +|+.-.++ =.+|| |-.|+-.+|=.-. .++-++=.|.=-....||.+. | =-
T Consensus 524 R~~---aP~IiFfDE-iDsi~~~R~g~~~~v~~RVl--sqLLtEmDG~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~ 595 (693)
T KOG0730|consen 524 RQV---APCIIFFDE-IDALAGSRGGSSSGVTDRVL--SQLLTEMDGLEAL--KNVLVIAATNRPDMIDPALLRPGRLDR 595 (693)
T ss_pred hhc---CCeEEehhh-HHhHhhccCCCccchHHHHH--HHHHHHccccccc--CcEEEEeccCChhhcCHHHcCCcccce
Confidence 332 337888884 33333333 12222 2344555553322 456666555555667788877 3 46
Q ss_pred EEEeeCCCC
Q psy4730 1500 MIYFELKCI 1508 (1513)
Q Consensus 1500 ~v~~~~~~~ 1508 (1513)
|||++..++
T Consensus 596 iiyVplPD~ 604 (693)
T KOG0730|consen 596 IIYVPLPDL 604 (693)
T ss_pred eEeecCccH
Confidence 888887665
No 34
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.88 E-value=3.4e-05 Score=92.45 Aligned_cols=53 Identities=25% Similarity=0.306 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC
Q psy4730 646 TDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT 698 (1513)
Q Consensus 646 t~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~ 698 (1513)
.+.....+..|+-.+....+.||+|+|||.+++.+|+.+|.+++.++|++.+.
T Consensus 29 ~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~ 81 (329)
T COG0714 29 DEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLL 81 (329)
T ss_pred cHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence 34445555566666666777999999999999999999999999999998876
No 35
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.79 E-value=0.0002 Score=89.10 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=39.9
Q ss_pred cceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.+|+|+|++. .|+|.++| ||.. ++++.|+.+....||..++..
T Consensus 332 ~~ViVI~ATN~~d-~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 332 DNVIVIGASNRED-MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred CceEEEeccCChh-hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 3678899998874 49999999 9876 999999999999999998765
No 36
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.78 E-value=0.00045 Score=85.11 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=57.4
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCChhhhccc--eEeecCCCC
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHM--NIISIDSFN 964 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f--~~~~~~~~~ 964 (1513)
+++||+.... +..+.+....++|.+-+..+ ..+.+|++.++. ...+++|+.++| ..+.+++++
T Consensus 142 iviDE~d~l~-~~~~~~~l~~l~~~~~~~~~------------~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~ 208 (394)
T PRK00411 142 VALDDINYLF-EKEGNDVLYSLLRAHEEYPG------------ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYT 208 (394)
T ss_pred EEECCHhHhh-ccCCchHHHHHHHhhhccCC------------CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCC
Confidence 4568887544 22333333444453332211 146677777765 334788888777 468999999
Q ss_pred hHHHHHHHHHHhhhhhhc-cchhHHHHHHHHH
Q psy4730 965 EATLSKIFTSVLDWHFSK-GFADSIVKLSKNI 995 (1513)
Q Consensus 965 ~~~l~~i~~~~l~~~~~~-~f~~~~~~~~~~~ 995 (1513)
.+++..|+...+...+.. .+.+++.......
T Consensus 209 ~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 240 (394)
T PRK00411 209 ADEIFDILKDRVEEGFYPGVVDDEVLDLIADL 240 (394)
T ss_pred HHHHHHHHHHHHHhhcccCCCCHhHHHHHHHH
Confidence 999999999887654422 4555554444333
No 37
>KOG0735|consensus
Probab=97.66 E-value=0.00085 Score=82.83 Aligned_cols=88 Identities=25% Similarity=0.289 Sum_probs=51.9
Q ss_pred HHHHH--HhhcCCCCcccchhhHHHHhhccCCC----CCCCCC---------CchHHHHHHHHHHHHcCccccHHHHHHH
Q psy4730 1277 VLRAI--IDVNMPKFLVQDLPLFIGIYKDLFPG----IELPPT---------DRDELIEQIKINLAKRNAQATDWYIEKI 1341 (1513)
Q Consensus 1277 l~~ai--~~~~~pkl~~~d~~lf~~li~~~Fp~----~~~~~~---------~~~~l~~~i~~~~~~~~l~~~~~~~~k~ 1341 (1513)
+..|+ +..+.||++.. .+|..-++++-|. +..... --.+..+++++.+ .|-.|-
T Consensus 621 i~~a~leris~~~klltk--e~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i---------~~P~ky 689 (952)
T KOG0735|consen 621 IHEAFLERISNGPKLLTK--ELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVI---------EWPSKY 689 (952)
T ss_pred HHHHHHHHhccCcccchH--HHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHH---------hccccc
Confidence 34444 44555554443 3688888888873 221111 1122334444443 222344
Q ss_pred HHHHHH--HHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1342 IQVYEM--ILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1342 ~qL~~~--~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
-++|.. +..+.||+|.||||||||-+..++|...
T Consensus 690 p~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~ 725 (952)
T KOG0735|consen 690 PQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS 725 (952)
T ss_pred hHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC
Confidence 456665 4567799999999999999998887654
No 38
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.65 E-value=0.00011 Score=80.09 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=37.2
Q ss_pred HHHhhccCCCCCccCCCCChHHHHHHHHhcCCcc-ccCCceeeeecceEEEEeecC
Q psy4730 888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLY-DFQTVTRVDLVDIIYITAMIP 942 (1513)
Q Consensus 888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y-d~~~~~~~~~~~~~~~~a~~~ 942 (1513)
.+|+||+|.-+.+ ++|.||+-++.|... .+.......-.+++++|||||
T Consensus 109 VLflDE~~ef~~~------vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 109 VLFLDELNEFDRS------VLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp EEEECETTTS-HH------HHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred EEEechhhhcCHH------HHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecc
Confidence 3678999977754 999999999998764 566667777779999999999
No 39
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.64 E-value=0.00023 Score=82.47 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=36.3
Q ss_pred ceEEEEeecCCC----CCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTM----NTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~----~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.+++|..|.. ..++|++.+|| ..+.+++++.+++..|+..++..
T Consensus 143 ~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 143 EFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 456666665541 25789999999 55999999999999999988765
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=97.62 E-value=0.0002 Score=83.72 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=46.3
Q ss_pred CChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC----CCCChhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 905 QPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM----NTITGRLLRHMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 905 q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~----~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
..+++.|.++++.+. .++.+|+|..+.+ ..++|.|.+||. .+.+++|+.+.+..|+..++..
T Consensus 145 ~e~~~~L~~~me~~~------------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 145 SEAIEILLQVMENQR------------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHhcCC------------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 345677777776421 3567777776541 245799999998 5999999999999999998765
No 41
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.62 E-value=0.0001 Score=79.14 Aligned_cols=123 Identities=13% Similarity=0.171 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccC---
Q psy4730 1340 KIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDS--- 1412 (1513)
Q Consensus 1340 k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~--- 1412 (1513)
-+-++-.+.....+|+|+|++||||+.+.+.+.....+ ..-.+..+|+.+++ ..+|||....
T Consensus 11 ~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-----------~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~ 79 (168)
T PF00158_consen 11 LREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-----------KNGPFISVNCAALPEELLESELFGHEKGAFT 79 (168)
T ss_dssp HHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT-----------TTS-EEEEETTTS-HHHHHHHHHEBCSSSST
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc-----------ccCCeEEEehhhhhcchhhhhhhcccccccc
Confidence 33445555667789999999999999999988763322 12357889999998 5689997542
Q ss_pred CCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730 1413 ASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus 1413 ~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
.......|.|..+ ..-=+++| +.+++..-+.|-.+|++++...+.+.+ ..+.++|+|+-|.
T Consensus 80 ~~~~~~~G~l~~A----------~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~RiI~st~ 142 (168)
T PF00158_consen 80 GARSDKKGLLEQA----------NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDK--PVPVDVRIIASTS 142 (168)
T ss_dssp TTSSEBEHHHHHT----------TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSS--EEE--EEEEEEES
T ss_pred ccccccCCceeec----------cceEEeecchhhhHHHHHHHHHHHHhhchhccccccc--cccccceEEeecC
Confidence 1234566776543 12568888 678999999999999988766664444 4556899999874
No 42
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.55 E-value=0.0003 Score=93.53 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=58.8
Q ss_pred hccCCCCCccCCCCChHHHHHHHHhc---CCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHH
Q psy4730 892 DDLNMPQKETYGAQPAVELLRQIIDH---KHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATL 968 (1513)
Q Consensus 892 dd~n~p~~~~~~~q~~le~lr~~~~~---~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l 968 (1513)
||+....++..|. +...|.+++|- +.|-|.-....+...++.|++|+|+. ..++|.|++||.++.+++|+.+..
T Consensus 421 DEidk~~~~~~~~--~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~-~~i~~~L~~R~~vi~~~~~~~~e~ 497 (775)
T TIGR00763 421 DEIDKIGSSFRGD--PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI-DTIPRPLLDRMEVIELSGYTEEEK 497 (775)
T ss_pred echhhcCCccCCC--HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc-hhCCHHHhCCeeEEecCCCCHHHH
Confidence 7777555443332 45556666662 44544432223445678889888874 469999999999999999999999
Q ss_pred HHHHHHHhh
Q psy4730 969 SKIFTSVLD 977 (1513)
Q Consensus 969 ~~i~~~~l~ 977 (1513)
..|...++.
T Consensus 498 ~~I~~~~l~ 506 (775)
T TIGR00763 498 LEIAKKYLI 506 (775)
T ss_pred HHHHHHHHH
Confidence 999988763
No 43
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.54 E-value=0.0002 Score=90.75 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=36.9
Q ss_pred ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.+|||+|+|. .|+|.++| ||. .+.++.|+.+....|+..++..
T Consensus 193 ~v~vI~aTn~~~-~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~ 240 (495)
T TIGR01241 193 GVIVIAATNRPD-VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKN 240 (495)
T ss_pred CeEEEEecCChh-hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhc
Confidence 477889998873 68888887 774 5999999999999999987764
No 44
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.52 E-value=0.00015 Score=82.62 Aligned_cols=74 Identities=12% Similarity=0.199 Sum_probs=46.9
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCChhhhccc---eEeecCCC
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHM---NIISIDSF 963 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f---~~~~~~~~ 963 (1513)
+++||+.....+.-.......+++.+.+.|.. ..++++.+|| .+.+.|++.+|+ .++.+.+|
T Consensus 101 liiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~-------------~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~ 167 (235)
T PRK08084 101 VCIDNIECIAGDELWEMAIFDLYNRILESGRT-------------RLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPL 167 (235)
T ss_pred EEEeChhhhcCCHHHHHHHHHHHHHHHHcCCC-------------eEEEeCCCChHHcCcccHHHHHHHhCCceeeecCC
Confidence 34588875443321112234555555543221 1234555666 466889999999 89999999
Q ss_pred ChHHHHHHHHHH
Q psy4730 964 NEATLSKIFTSV 975 (1513)
Q Consensus 964 ~~~~l~~i~~~~ 975 (1513)
+.+++..|....
T Consensus 168 ~~~~~~~~l~~~ 179 (235)
T PRK08084 168 SDEEKLQALQLR 179 (235)
T ss_pred CHHHHHHHHHHH
Confidence 999999998763
No 45
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.49 E-value=0.00042 Score=71.62 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=69.7
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCH-HHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI-LAKTFREM 1429 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~-l~~~lR~~ 1429 (1513)
..+++|+||||+|||++.+.++..+..- ...+..+++........+. +..+. ....++..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-----------~~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 79 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-----------GAPFLYLNASDLLEGLVVA--------ELFGHFLVRLLFEL 79 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC-----------CCCeEEEehhhhhhhhHHH--------HHhhhhhHhHHHHh
Confidence 6789999999999999999998887521 1234444444332211111 11110 11111111
Q ss_pred hccCCCCceEEEEcCC--CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC--CCCcchhhcc-EEEEee
Q psy4730 1430 AVSTTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE--FASPATVSRV-GMIYFE 1504 (1513)
Q Consensus 1430 ~~~~~~~~~WivfDG~--~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~--~asPatvsRc-g~v~~~ 1504 (1513)
........+++|.. +++...+.+..++..-.... ..+..+++++.+.+-. ...+...+|| ..|.++
T Consensus 80 --~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 80 --AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred --hccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 12335689999942 22334444444443322211 4456778888776665 5667888999 555554
No 46
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.48 E-value=0.00038 Score=81.46 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=38.9
Q ss_pred cceEEEEeecCCC----CCCChhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTM----NTITGRLLRHMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~----~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.+|+|..+.+ ..++|.|.+||. .+.+++++.+++..|+..++..
T Consensus 159 ~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 159 DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 4677888887752 346899999995 6999999999999999998766
No 47
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.00057 Score=83.03 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=72.7
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
+..|++++.||+|+||||+.+.+++.+.--... ..++..| .......++| .++...
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~--------------~~~~~v 101 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDA--------------ASRTKV 101 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecc--------------cccCCH
Confidence 346889999999999999999999988621110 0011000 0011222222 111111
Q ss_pred cCHHHHHHHHhhccC-CCCceEEEEcCCCChHHHHhhhccc---CCCCceeecCCCeeecCCCCeEEEeecCCCCCCcch
Q psy4730 1419 DGILAKTFREMAVST-TPDRKWIMFDGPIDAVWIENMNTVL---DDNKKLCLINGEIIKMSNTMNLIFECENLEFASPAT 1494 (1513)
Q Consensus 1419 DG~l~~~lR~~~~~~-~~~~~WivfDG~~d~~wiE~LNsvL---Ddn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPat 1494 (1513)
|- +-.++......+ ....+.+|+|. +|..--+..|.+| ++ .|+++.++|-+++.....|+.
T Consensus 102 ~~-ir~i~~~~~~~p~~~~~kviIIDE-a~~l~~~a~naLLk~lEe-------------~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 102 EE-MREILDNIYYSPSKSRFKVYLIDE-VHMLSRHSFNALLKTLEE-------------PPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred HH-HHHHHHHHhcCcccCCceEEEEEC-hhhcCHHHHHHHHHHHhc-------------CCCCeEEEEEcCChHhhhHHH
Confidence 11 122222222222 23568999996 2222222333333 33 356788999999998888888
Q ss_pred hhccEEEEeeCC
Q psy4730 1495 VSRVGMIYFELK 1506 (1513)
Q Consensus 1495 vsRcg~v~~~~~ 1506 (1513)
.|||-.+.|.|-
T Consensus 167 ~SRc~~~~~~~l 178 (363)
T PRK14961 167 LSRCLQFKLKII 178 (363)
T ss_pred HhhceEEeCCCC
Confidence 999999888764
No 48
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.41 E-value=0.0026 Score=77.63 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=42.9
Q ss_pred ceEEEEeecCC--CCCCChhhhccc--eEeecCCCChHHHHHHHHHHhhhhhhc-cchhHHHHH
Q psy4730 933 DIIYITAMIPT--MNTITGRLLRHM--NIISIDSFNEATLSKIFTSVLDWHFSK-GFADSIVKL 991 (1513)
Q Consensus 933 ~~~~~~a~~~~--~~~~~~r~~~~f--~~~~~~~~~~~~l~~i~~~~l~~~~~~-~f~~~~~~~ 991 (1513)
.+.+++++|.+ ...+.+|+.++| ..+.+++++.+++..|....+...+.. .+.+++...
T Consensus 165 ~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ 228 (365)
T TIGR02928 165 KVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPL 228 (365)
T ss_pred eEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHH
Confidence 56778888776 346899999998 468999999999999999887643322 244544433
No 49
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.41 E-value=0.00021 Score=73.07 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=72.4
Q ss_pred EEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhccC
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVST 1433 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~~ 1433 (1513)
|+|+||||||||++++.+++.++ ..+..+++..+. .+..|.. ...+..+++++....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--------------~~~~~i~~~~~~-~~~~~~~--------~~~i~~~~~~~~~~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--------------FPFIEIDGSELI-SSYAGDS--------EQKIRDFFKKAKKSA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--------------SEEEEEETTHHH-TSSTTHH--------HHHHHHHHHHHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--------------cccccccccccc-ccccccc--------ccccccccccccccc
Confidence 68999999999999999998875 345666655443 1211211 112233344432221
Q ss_pred CCCceEEEEcC--CC-----------ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh-hccE
Q psy4730 1434 TPDRKWIMFDG--PI-----------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV-SRVG 1499 (1513)
Q Consensus 1434 ~~~~~WivfDG--~~-----------d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv-sRcg 1499 (1513)
.+.-+++|. .+ +...++.|.+.+|....- .+++.+++-+.+.....|+.. +||.
T Consensus 58 --~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~----------~~~~~vI~ttn~~~~i~~~l~~~rf~ 125 (132)
T PF00004_consen 58 --KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK----------NSRVIVIATTNSPDKIDPALLRSRFD 125 (132)
T ss_dssp --TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT----------SSSEEEEEEESSGGGSCHHHHSTTSE
T ss_pred --cceeeeeccchhcccccccccccccccccceeeecccccccc----------cccceeEEeeCChhhCCHhHHhCCCc
Confidence 458888893 11 122355565666544322 667899999999999999999 9998
Q ss_pred EEE
Q psy4730 1500 MIY 1502 (1513)
Q Consensus 1500 ~v~ 1502 (1513)
...
T Consensus 126 ~~i 128 (132)
T PF00004_consen 126 RRI 128 (132)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 50
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.40 E-value=0.00073 Score=87.82 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=45.2
Q ss_pred HHHHHHHh-cCCccccCCceeeeecceEEEEeecCCCCCCChhhhc--cc-eEeecCCCChHHHHHHHHHHhhhh
Q psy4730 909 ELLRQIID-HKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLR--HM-NIISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 909 e~lr~~~~-~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~--~f-~~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
..+.+++. -.||++. .++.++||+|+|. .|+|+++| || ..+.++.|+.++...|+..++...
T Consensus 273 ~~ln~lL~~mdg~~~~--------~~vivIaaTN~p~-~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 273 QTLNQMLVEMDGFEGN--------EGIIVIAATNRPD-VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred HHHHHHHHhhhcccCC--------CCeeEEEecCChh-hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 34555543 3455543 3688999999874 57888887 77 468899999999999998877653
No 51
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.00084 Score=81.72 Aligned_cols=132 Identities=14% Similarity=0.201 Sum_probs=78.4
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccc---------cceeEEEecCCCCChhhccccccCCCCCCccC
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
..|++++.||+|+|||++.+.+|+++.--.....++..| .+..++.+.|...+ .| ++
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~----i~-i~--------- 100 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLS----IG-VD--------- 100 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccccc----CC-HH---------
Confidence 468999999999999999999999875321111111111 23345555553211 00 10
Q ss_pred HHHHHHHHhhccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccE
Q psy4730 1421 ILAKTFREMAVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG 1499 (1513)
Q Consensus 1421 ~l~~~lR~~~~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg 1499 (1513)
-+-.+++.....+ ....+.+|+|. +|..=-+.-|++|. . | | ..|+++.+|+-+++.....|+-.|||-
T Consensus 101 ~iR~l~~~~~~~p~~~~~kViiIDe-ad~m~~~aanaLLk---~--L---E--ep~~~~~fIL~a~~~~~llpTIrSRc~ 169 (394)
T PRK07940 101 EVRELVTIAARRPSTGRWRIVVIED-ADRLTERAANALLK---A--V---E--EPPPRTVWLLCAPSPEDVLPTIRSRCR 169 (394)
T ss_pred HHHHHHHHHHhCcccCCcEEEEEec-hhhcCHHHHHHHHH---H--h---h--cCCCCCeEEEEECChHHChHHHHhhCe
Confidence 0122333332222 34678899985 22111233455442 1 1 1 146778899999999999999999999
Q ss_pred EEEeeCC
Q psy4730 1500 MIYFELK 1506 (1513)
Q Consensus 1500 ~v~~~~~ 1506 (1513)
.|+|.+-
T Consensus 170 ~i~f~~~ 176 (394)
T PRK07940 170 HVALRTP 176 (394)
T ss_pred EEECCCC
Confidence 9999764
No 52
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00066 Score=88.82 Aligned_cols=80 Identities=15% Similarity=0.308 Sum_probs=61.2
Q ss_pred hccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------------------------CCCC
Q psy4730 892 DDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------MNTI 947 (1513)
Q Consensus 892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------~~~~ 947 (1513)
||+....++ +...|-|++|.|.+.|... ..+...++.+|++.|-. +..+
T Consensus 564 DEieka~~~------v~~~LLq~ld~G~ltd~~g-~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f 636 (758)
T PRK11034 564 DEIEKAHPD------VFNLLLQVMDNGTLTDNNG-RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIF 636 (758)
T ss_pred ccHhhhhHH------HHHHHHHHHhcCeeecCCC-ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhc
Confidence 777766544 7899999999988877543 34566788899988832 1347
Q ss_pred Chhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 948 TGRLLRHMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 948 ~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.|.|++|+. ++.+.+++.+++.+|....+..
T Consensus 637 ~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 637 TPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred CHHHHccCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 799999995 7899999999999998876543
No 53
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.39 E-value=0.0027 Score=78.77 Aligned_cols=44 Identities=14% Similarity=0.284 Sum_probs=34.8
Q ss_pred EEEEeecCC--CCCCChhhhccc---eEeecCCCChHHHHHHHHHHhhh
Q psy4730 935 IYITAMIPT--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 935 ~~~~a~~~~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++++..+| -..+.+|+.+|| -++.+.+|+.+++..|.......
T Consensus 238 IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 238 IVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred EEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 445555555 357999999999 58999999999999999886654
No 54
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.36 E-value=0.0011 Score=73.02 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHhc----ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccc
Q psy4730 1335 DWYIEKIIQVYEMILVR----HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEF 1410 (1513)
Q Consensus 1335 ~~~~~k~~qL~~~~~~~----~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~ 1410 (1513)
+..+.+.--+.++...+ ..+++.||||+||||+.+++|+.++. .++..+-.++..
T Consensus 30 ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~--------------~~~~~sg~~i~k------- 88 (233)
T PF05496_consen 30 EHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV--------------NFKITSGPAIEK------- 88 (233)
T ss_dssp HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----------------EEEEECCC--S-------
T ss_pred HHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC--------------CeEeccchhhhh-------
Confidence 33444433344444443 37999999999999999999988763 444444323321
Q ss_pred cCCCCCCccCHHHHHHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCc-eeecCC---CeeecC-CCCeEEEe
Q psy4730 1411 DSASHEWRDGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKK-LCLING---EIIKMS-NTMNLIFE 1483 (1513)
Q Consensus 1411 ~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~-L~L~nG---e~i~~~-~~~~~iFE 1483 (1513)
-|-+..++.+. .....+..|. -+....-|.|-+.++|... +.+.-| ..++++ |++.++=.
T Consensus 89 --------~~dl~~il~~l-----~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 89 --------AGDLAAILTNL-----KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp --------CHHHHHHHHT-------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred --------HHHHHHHHHhc-----CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 11223333332 2236777784 5578888999999998655 444433 234444 46999999
Q ss_pred ecCCCCCCcchhhccEEEE
Q psy4730 1484 CENLEFASPATVSRVGMIY 1502 (1513)
Q Consensus 1484 ~~~l~~asPatvsRcg~v~ 1502 (1513)
|+.....|++.-+|.|++.
T Consensus 156 TTr~g~ls~pLrdRFgi~~ 174 (233)
T PF05496_consen 156 TTRAGLLSSPLRDRFGIVL 174 (233)
T ss_dssp ESSGCCTSHCCCTTSSEEE
T ss_pred eccccccchhHHhhcceec
Confidence 9999999999999999984
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.36 E-value=0.0027 Score=84.66 Aligned_cols=131 Identities=14% Similarity=0.177 Sum_probs=81.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC-ChhhccccccCCCCCCc---cCHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGEFDSASHEWR---DGILAKTFR 1427 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~-t~~eL~G~~~~~t~eW~---DG~l~~~lR 1427 (1513)
..++|+||||||||++.+.++++++. ...+++.... +..++.|.. ..|. .|-+..+++
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~--------------~~~~i~~~~~~~~~~i~g~~----~~~~g~~~g~i~~~l~ 409 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNR--------------KFVRFSLGGVRDEAEIRGHR----RTYVGAMPGRIIQGLK 409 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcC--------------CeEEEeCCCcccHHHHcCCC----CceeCCCCchHHHHHH
Confidence 46999999999999999999999863 3445554333 356666632 2232 344555555
Q ss_pred HhhccCCCCceEEEEcC-----C-CChHHHHhhhcccCC--CCceeec-CCCeeecCCCCeEEEeecCCCCCCcchhhcc
Q psy4730 1428 EMAVSTTPDRKWIMFDG-----P-IDAVWIENMNTVLDD--NKKLCLI-NGEIIKMSNTMNLIFECENLEFASPATVSRV 1498 (1513)
Q Consensus 1428 ~~~~~~~~~~~WivfDG-----~-~d~~wiE~LNsvLDd--n~~L~L~-nGe~i~~~~~~~~iFE~~~l~~asPatvsRc 1498 (1513)
++.. ....|++|- + ....-...|-.+||+ |+.+.=. -|..+.+ .++-+|+-+..+....||..+||
T Consensus 410 ~~~~----~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN~~~~i~~~L~~R~ 484 (775)
T TIGR00763 410 KAKT----KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDL-SKVIFIATANSIDTIPRPLLDRM 484 (775)
T ss_pred HhCc----CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceecc-CCEEEEEecCCchhCCHHHhCCe
Confidence 5421 223799993 1 111124567777876 3322211 1333333 35667777777778999999999
Q ss_pred EEEEeeC
Q psy4730 1499 GMIYFEL 1505 (1513)
Q Consensus 1499 g~v~~~~ 1505 (1513)
-+|.|.+
T Consensus 485 ~vi~~~~ 491 (775)
T TIGR00763 485 EVIELSG 491 (775)
T ss_pred eEEecCC
Confidence 9988875
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.34 E-value=0.00099 Score=84.80 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=75.8
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
+..|.+++.||+|+||||+.++|++.++--.... ..+..| ...++..||+. + .
T Consensus 36 RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAa--------------s---~ 98 (830)
T PRK07003 36 RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAA--------------S---N 98 (830)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccc--------------c---c
Confidence 3468999999999999999999999987321110 111111 01122222221 1 1
Q ss_pred cCH--HHHHHHHhhccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh
Q psy4730 1419 DGI--LAKTFREMAVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 1495 (1513)
Q Consensus 1419 DG~--l~~~lR~~~~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv 1495 (1513)
.|+ +-.+++...... ....+.||+|. +|-.=-+..|.+|. +|- ..|++++|||-+++.....|...
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDE-ah~LT~~A~NALLK-----tLE-----EPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDE-VHMLTNHAFNAMLK-----TLE-----EPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeC-hhhCCHHHHHHHHH-----HHH-----hcCCCeEEEEEECChhhccchhh
Confidence 222 222333322222 34578999995 21111244555531 111 13678999999999999999999
Q ss_pred hccEEEEeeC
Q psy4730 1496 SRVGMIYFEL 1505 (1513)
Q Consensus 1496 sRcg~v~~~~ 1505 (1513)
|||-.+.|.+
T Consensus 168 SRCq~f~Fk~ 177 (830)
T PRK07003 168 SRCLQFNLKQ 177 (830)
T ss_pred hheEEEecCC
Confidence 9999998865
No 57
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.33 E-value=0.0011 Score=78.62 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=75.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
.+++|+||||+|||++.+.++..++. .+..++..... . -|.+...++..
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~~--------------~~~~~~~~~~~----------~-----~~~l~~~l~~~-- 79 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMGV--------------NLKITSGPALE----------K-----PGDLAAILTNL-- 79 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC--------------CEEEeccchhc----------C-----chhHHHHHHhc--
Confidence 35999999999999999999877642 22222211111 0 12233444432
Q ss_pred cCCCCceEEEEcC--CCChHHHHhhhcccCCCCcee-ecCC---C--eeecCCCCeEEEeecCCCCCCcchhhccEEE-E
Q psy4730 1432 STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLC-LING---E--IIKMSNTMNLIFECENLEFASPATVSRVGMI-Y 1502 (1513)
Q Consensus 1432 ~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~-L~nG---e--~i~~~~~~~~iFE~~~l~~asPatvsRcg~v-~ 1502 (1513)
....++++|. -+++...|.|.+++++.+... +.+| + ++.+|+ +.++..|+.....+|+..|||+++ .
T Consensus 80 ---~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~li~~t~~~~~l~~~l~sR~~~~~~ 155 (305)
T TIGR00635 80 ---EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPP-FTLVGATTRAGMLTSPLRDRFGIILR 155 (305)
T ss_pred ---ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCC-eEEEEecCCccccCHHHHhhcceEEE
Confidence 2236899994 456677888999998776443 3333 2 234444 667777777778899999999875 4
Q ss_pred eeC
Q psy4730 1503 FEL 1505 (1513)
Q Consensus 1503 ~~~ 1505 (1513)
+++
T Consensus 156 l~~ 158 (305)
T TIGR00635 156 LEF 158 (305)
T ss_pred eCC
Confidence 654
No 58
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.00075 Score=84.96 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=80.3
Q ss_pred HHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhcccccc
Q psy4730 1342 IQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFD 1411 (1513)
Q Consensus 1342 ~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~ 1411 (1513)
.+....-+..|+.++.||+|+||||+.++++++++-..+. ..++..| ...+++.+++.+
T Consensus 29 ~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas----------- 97 (509)
T PRK14958 29 SNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS----------- 97 (509)
T ss_pred HHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc-----------
Confidence 3333444557899999999999999999999999742211 1111111 122334444321
Q ss_pred CCCCCCccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC
Q psy4730 1412 SASHEWRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN 1486 (1513)
Q Consensus 1412 ~~t~eW~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~ 1486 (1513)
..|+ .-+|+.. ..+ ....+.+|+|. +|-.=-+..|.+|. +|- ..|+++.|||-|+|
T Consensus 98 ------~~~v--~~iR~l~~~~~~~p~~~~~kV~iIDE-~~~ls~~a~naLLk-----~LE-----epp~~~~fIlattd 158 (509)
T PRK14958 98 ------RTKV--EDTRELLDNIPYAPTKGRFKVYLIDE-VHMLSGHSFNALLK-----TLE-----EPPSHVKFILATTD 158 (509)
T ss_pred ------cCCH--HHHHHHHHHHhhccccCCcEEEEEEC-hHhcCHHHHHHHHH-----HHh-----ccCCCeEEEEEECC
Confidence 1121 2234332 222 34679999995 22111244454441 111 14789999999999
Q ss_pred CCCCCcchhhccEEEEeeC
Q psy4730 1487 LEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1487 l~~asPatvsRcg~v~~~~ 1505 (1513)
.....|...|||-.+.|.+
T Consensus 159 ~~kl~~tI~SRc~~~~f~~ 177 (509)
T PRK14958 159 HHKLPVTVLSRCLQFHLAQ 177 (509)
T ss_pred hHhchHHHHHHhhhhhcCC
Confidence 9999888899999988864
No 59
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.31 E-value=0.0016 Score=78.22 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=54.7
Q ss_pred hhccCCCCCccCCCCChHHHHHHHHhcCCcc---ccCC---ceeeeecceEEEEeecCCCCCCChhhhccce-EeecCCC
Q psy4730 891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLY---DFQT---VTRVDLVDIIYITAMIPTMNTITGRLLRHMN-IISIDSF 963 (1513)
Q Consensus 891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y---d~~~---~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~-~~~~~~~ 963 (1513)
+||++.-.. ...|.++.+++..... +.+. .....+-++.+++|++++. .+++.+.+||. .+.+++|
T Consensus 108 IDEi~~l~~------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~-~l~~~L~sRf~~~~~l~~~ 180 (328)
T PRK00080 108 IDEIHRLSP------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG-LLTSPLRDRFGIVQRLEFY 180 (328)
T ss_pred EecHhhcch------HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcc-cCCHHHHHhcCeeeecCCC
Confidence 388773321 2567788888754321 1111 1122344688899988764 57888999994 5899999
Q ss_pred ChHHHHHHHHHHhhh
Q psy4730 964 NEATLSKIFTSVLDW 978 (1513)
Q Consensus 964 ~~~~l~~i~~~~l~~ 978 (1513)
+.+++..|+......
T Consensus 181 ~~~e~~~il~~~~~~ 195 (328)
T PRK00080 181 TVEELEKIVKRSARI 195 (328)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999976554
No 60
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.31 E-value=0.0012 Score=72.71 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=48.2
Q ss_pred hccCCCCCccCCCCChHHHHHHHHhcCCcc---c--cC-CceeeeecceEEEEeecCCCCCCChhhhccceEe-ecCCCC
Q psy4730 892 DDLNMPQKETYGAQPAVELLRQIIDHKHLY---D--FQ-TVTRVDLVDIIYITAMIPTMNTITGRLLRHMNII-SIDSFN 964 (1513)
Q Consensus 892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~y---d--~~-~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~-~~~~~~ 964 (1513)
||++--.+ ..-|.|=-.+|.|.+- . ++ ..-.+.+..+++++|+.-. ..+++-|..||-++ .+++.+
T Consensus 108 DEIHRlnk------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~-g~ls~pLrdRFgi~~~l~~Y~ 180 (233)
T PF05496_consen 108 DEIHRLNK------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA-GLLSSPLRDRFGIVLRLEFYS 180 (233)
T ss_dssp CTCCC--H------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG-CCTSHCCCTTSSEEEE----T
T ss_pred echhhccH------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc-cccchhHHhhcceecchhcCC
Confidence 88873332 2467888888876552 1 11 2245566789999998765 57899999999996 699999
Q ss_pred hHHHHHHHHH
Q psy4730 965 EATLSKIFTS 974 (1513)
Q Consensus 965 ~~~l~~i~~~ 974 (1513)
.+.|.+|...
T Consensus 181 ~~el~~Iv~r 190 (233)
T PF05496_consen 181 EEELAKIVKR 190 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 61
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.29 E-value=0.0013 Score=79.00 Aligned_cols=119 Identities=17% Similarity=0.246 Sum_probs=76.7
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
+++++.||||+|||++.+.++..++. .+..++...+. ..|.+..+++..
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~--------------~~~~~~~~~~~---------------~~~~l~~~l~~l-- 100 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGV--------------NIRITSGPALE---------------KPGDLAAILTNL-- 100 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCC--------------CeEEEeccccc---------------ChHHHHHHHHhc--
Confidence 47999999999999999999988752 12222211111 113344444433
Q ss_pred cCCCCceEEEEcC--CCChHHHHhhhcccCCCCcee-ecCCC-----eeecCCCCeEEEeecCCCCCCcchhhccEE-EE
Q psy4730 1432 STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLC-LINGE-----IIKMSNTMNLIFECENLEFASPATVSRVGM-IY 1502 (1513)
Q Consensus 1432 ~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~-L~nGe-----~i~~~~~~~~iFE~~~l~~asPatvsRcg~-v~ 1502 (1513)
.....+++|. .+.+..-|.+.+++++.+... +.+|. ++.+| .+.++..|+.....+|+..||||+ +.
T Consensus 101 ---~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~~~l~~~L~sRf~~~~~ 176 (328)
T PRK00080 101 ---EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRAGLLTSPLRDRFGIVQR 176 (328)
T ss_pred ---ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCcccCCHHHHHhcCeeee
Confidence 2346888883 345556677888888775543 33332 23344 478899999888999999999986 45
Q ss_pred eeC
Q psy4730 1503 FEL 1505 (1513)
Q Consensus 1503 ~~~ 1505 (1513)
+++
T Consensus 177 l~~ 179 (328)
T PRK00080 177 LEF 179 (328)
T ss_pred cCC
Confidence 554
No 62
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.28 E-value=0.00051 Score=83.78 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=36.7
Q ss_pred ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.+|+|+|.+ ..++|.++| ||. .+.++.|+.+....|+..++..
T Consensus 284 ~v~VI~aTN~~-d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 284 NVKVIMATNRA-DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred CEEEEEecCCc-hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc
Confidence 57788998876 479999998 774 4899999999999999877654
No 63
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.27 E-value=0.0017 Score=73.37 Aligned_cols=123 Identities=19% Similarity=0.247 Sum_probs=73.9
Q ss_pred cccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhcccccc
Q psy4730 1332 QATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFD 1411 (1513)
Q Consensus 1332 ~~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~ 1411 (1513)
..||..-.--+.|-+++..+.|..+.||+|+|||.+++.|++++++ .+++.|+....--
T Consensus 13 v~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~--------------~~~vfnc~~~~~~------- 71 (231)
T PF12774_consen 13 VITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGR--------------FVVVFNCSEQMDY------- 71 (231)
T ss_dssp ---HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT----------------EEEEETTSSS-H-------
T ss_pred eechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCC--------------eEEEecccccccH-------
Confidence 3344333334567778888899999999999999999999999985 5677776654321
Q ss_pred CCCCCCccCHHHHHHHHhhccCCCCceEEEEcC--CCChHHHHhh----h---ccc-CCCCceeecCCCeeecCCCCeEE
Q psy4730 1412 SASHEWRDGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENM----N---TVL-DDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus 1412 ~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~L----N---svL-Ddn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
..+.++++=.++. -.|.+||+ -++.+.+-.+ . ..+ ...+..++ .|+.|++.+++.++
T Consensus 72 --------~~l~ril~G~~~~----GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iF 138 (231)
T PF12774_consen 72 --------QSLSRILKGLAQS----GAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIF 138 (231)
T ss_dssp --------HHHHHHHHHHHHH----T-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEE
T ss_pred --------HHHHHHHHHHhhc----CchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEE
Confidence 2334555433321 38999994 5555433332 2 223 44566666 79999999998776
Q ss_pred EeecCCCC
Q psy4730 1482 FECENLEF 1489 (1513)
Q Consensus 1482 FE~~~l~~ 1489 (1513)
. |.|-.+
T Consensus 139 i-T~np~y 145 (231)
T PF12774_consen 139 I-TMNPGY 145 (231)
T ss_dssp E-EE-B-C
T ss_pred E-eecccc
Confidence 6 444444
No 64
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.27 E-value=0.0013 Score=81.40 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=35.9
Q ss_pred eEEEEeecC-CCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 934 IIYITAMIP-TMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 934 ~~~~~a~~~-~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
+.+++|+.. +...+++.+++|+.++.+.+|+.+++..++...+..
T Consensus 121 iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 121 ITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred EEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 456666543 355789999999999999999999999998887654
No 65
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0013 Score=82.98 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=74.7
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
...|++++.||+|+||||+.+.+++.++--... ..++..| ....+..++..+.
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~----------------- 98 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR----------------- 98 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc-----------------
Confidence 346789999999999999999999988632111 0111111 0112222222110
Q ss_pred cCH--HHHHHHHhhcc-CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcc
Q psy4730 1419 DGI--LAKTFREMAVS-TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPA 1493 (1513)
Q Consensus 1419 DG~--l~~~lR~~~~~-~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPa 1493 (1513)
-|+ +-.++...... ....++-+|+|. .+...-.+.|-..|++ .|+++.|||-|+|.....|+
T Consensus 99 ~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-------------pp~~v~fIL~Ttd~~kil~t 165 (546)
T PRK14957 99 TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-------------PPEYVKFILATTDYHKIPVT 165 (546)
T ss_pred cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-------------CCCCceEEEEECChhhhhhh
Confidence 111 11222222211 234678899995 2233233333334443 36789999999998888888
Q ss_pred hhhccEEEEeeCC
Q psy4730 1494 TVSRVGMIYFELK 1506 (1513)
Q Consensus 1494 tvsRcg~v~~~~~ 1506 (1513)
..|||-++.|.+-
T Consensus 166 I~SRc~~~~f~~L 178 (546)
T PRK14957 166 ILSRCIQLHLKHI 178 (546)
T ss_pred HHHheeeEEeCCC
Confidence 8999999998764
No 66
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.25 E-value=0.0016 Score=69.75 Aligned_cols=143 Identities=23% Similarity=0.217 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccc---------ccceeEEEecCCCCChhhc
Q psy4730 1336 WYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMK---------EFKTGYKIINPKSITMGQL 1406 (1513)
Q Consensus 1336 ~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~---------~~~~~~~~inp~~~t~~eL 1406 (1513)
..+....++++.-...|+.++.||+|+||+++...+++.+.--.....++.. ....+++.++|..-..
T Consensus 4 ~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~--- 80 (162)
T PF13177_consen 4 EIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK--- 80 (162)
T ss_dssp HHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---
Confidence 3445555566555667899999999999999999999987543222111111 1123344444432210
Q ss_pred cccccCCCCCCccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEE
Q psy4730 1407 YGEFDSASHEWRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus 1407 ~G~~~~~t~eW~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
.. -..-+|+.. ..+ ....+-+|+|. +|..=.++-|++| |.|= ..|+++.+|
T Consensus 81 ---------~i----~i~~ir~i~~~~~~~~~~~~~KviiI~~-ad~l~~~a~NaLL---K~LE-------epp~~~~fi 136 (162)
T PF13177_consen 81 ---------SI----KIDQIREIIEFLSLSPSEGKYKVIIIDE-ADKLTEEAQNALL---KTLE-------EPPENTYFI 136 (162)
T ss_dssp ---------SB----SHHHHHHHHHHCTSS-TTSSSEEEEEET-GGGS-HHHHHHHH---HHHH-------STTTTEEEE
T ss_pred ---------hh----hHHHHHHHHHHHHHHHhcCCceEEEeeh-HhhhhHHHHHHHH---HHhc-------CCCCCEEEE
Confidence 11 123344432 222 24678899986 3333346666665 1111 136799999
Q ss_pred EeecCCCCCCcchhhccEEEEeeC
Q psy4730 1482 FECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1482 FE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
+-+++....-|.-.|||-.|++.+
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRP 160 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE--
T ss_pred EEECChHHChHHHHhhceEEecCC
Confidence 999999999999999999999976
No 67
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.25 E-value=0.00046 Score=86.01 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=38.6
Q ss_pred ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
.+.++||+|.+. .++|.++| ||. .++++.|+.+.-..||..++...
T Consensus 360 ~V~vIaTTN~~~-~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 360 PVFVVATANNID-LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred ceEEEEecCChh-hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 567888888764 69999998 885 58999999999999999988663
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.00092 Score=84.25 Aligned_cols=127 Identities=15% Similarity=0.114 Sum_probs=76.2
Q ss_pred HHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccc---------cceeEEEecCCCCChhhccccccCCCCC
Q psy4730 1347 MILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHE 1416 (1513)
Q Consensus 1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~e 1416 (1513)
.-+..|++++.||+|+||||+.+++|++++-..+.. .++..| ....+..+|+.+ +
T Consensus 33 ~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs--------------~- 97 (702)
T PRK14960 33 RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS--------------R- 97 (702)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc--------------c-
Confidence 334468999999999999999999999987322110 111111 112223333221 1
Q ss_pred CccCHHHHHHHHhh----ccC-CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCC
Q psy4730 1417 WRDGILAKTFREMA----VST-TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEF 1489 (1513)
Q Consensus 1417 W~DG~l~~~lR~~~----~~~-~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~ 1489 (1513)
.|+ .-+|+.. ..+ ..+.+-+|+|. -+++.-...|-..|++ .|+++.|||-+++...
T Consensus 98 --~~V--ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-------------PP~~v~FILaTtd~~k 160 (702)
T PRK14960 98 --TKV--EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-------------PPEHVKFLFATTDPQK 160 (702)
T ss_pred --CCH--HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------------CCCCcEEEEEECChHh
Confidence 121 2233332 111 24568899995 2344333444444333 4578899999999888
Q ss_pred CCcchhhccEEEEeeC
Q psy4730 1490 ASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1490 asPatvsRcg~v~~~~ 1505 (1513)
..|+.+|||..+.|.+
T Consensus 161 Ip~TIlSRCq~feFkp 176 (702)
T PRK14960 161 LPITVISRCLQFTLRP 176 (702)
T ss_pred hhHHHHHhhheeeccC
Confidence 8777789999998865
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=97.22 E-value=0.00096 Score=79.70 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=69.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
+.+++.||||+||||+.+++++.+..-. ....+.-+|+. +..| -.++-..++..+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~---------~~~~~~eln~s-----d~~~----------~~~vr~~i~~~~~ 90 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPN---------YKEAVLELNAS-----DDRG----------IDVVRNKIKMFAQ 90 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhccc---------Cccceeeeccc-----cccc----------HHHHHHHHHHHHh
Confidence 3589999999999999999998874200 00111222321 1111 1122333333332
Q ss_pred cC----CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730 1432 ST----TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1432 ~~----~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
.. ....+.+++|. .+...--..|...++. .+++++++|-+.+.....|+-.|||.++.|.+
T Consensus 91 ~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-------------~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~ 157 (319)
T PLN03025 91 KKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEI-------------YSNTTRFALACNTSSKIIEPIQSRCAIVRFSR 157 (319)
T ss_pred ccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-------------ccCCceEEEEeCCccccchhHHHhhhcccCCC
Confidence 21 23568899993 2333334455444431 24567788888788888899999999988865
No 70
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.18 E-value=0.0023 Score=66.08 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=24.1
Q ss_pred CCccceeccCCCccchHhHHHHHhccC
Q psy4730 728 NDVPMMFVGPTGTGKSTIVLNLLLNLS 754 (1513)
Q Consensus 728 ~~~~~ll~G~~g~GKt~~v~~~~~~~~ 754 (1513)
.+.+++++||+|||||++++.+...+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999999988764
No 71
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.0014 Score=81.50 Aligned_cols=129 Identities=14% Similarity=0.175 Sum_probs=80.7
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-ccccc---------ccceeEEEecCCCCChhhccccccCC
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMK---------EFKTGYKIINPKSITMGQLYGEFDSA 1413 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~---------~~~~~~~~inp~~~t~~eL~G~~~~~ 1413 (1513)
.+..-+..|+.++.||+|+||||+.+++|++++-..+.. .++.. ....++.-+|+.+.+
T Consensus 28 a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~----------- 96 (491)
T PRK14964 28 AFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNT----------- 96 (491)
T ss_pred HHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCC-----------
Confidence 333334467999999999999999999999987432211 11111 123344555554221
Q ss_pred CCCCccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhccc---CCCCceeecCCCeeecCCCCeEEEeec
Q psy4730 1414 SHEWRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVL---DDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus 1414 t~eW~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvL---Ddn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
|+ .-+|+.. ..+ ....+.+|+|. +|-.--+..|.+| ++ .|+++.+||.++
T Consensus 97 ------~v--ddIR~Iie~~~~~P~~~~~KVvIIDE-ah~Ls~~A~NaLLK~LEe-------------Pp~~v~fIlatt 154 (491)
T PRK14964 97 ------SV--DDIKVILENSCYLPISSKFKVYIIDE-VHMLSNSAFNALLKTLEE-------------PAPHVKFILATT 154 (491)
T ss_pred ------CH--HHHHHHHHHHHhccccCCceEEEEeC-hHhCCHHHHHHHHHHHhC-------------CCCCeEEEEEeC
Confidence 21 2233321 111 34679999996 2222224455443 32 467899999999
Q ss_pred CCCCCCcchhhccEEEEeeC
Q psy4730 1486 NLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1486 ~l~~asPatvsRcg~v~~~~ 1505 (1513)
+.....|+-.|||-.+.|.+
T Consensus 155 e~~Kl~~tI~SRc~~~~f~~ 174 (491)
T PRK14964 155 EVKKIPVTIISRCQRFDLQK 174 (491)
T ss_pred ChHHHHHHHHHhheeeeccc
Confidence 99999999999999998865
No 72
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.001 Score=76.77 Aligned_cols=60 Identities=20% Similarity=0.143 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhhh
Q psy4730 908 VELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 908 le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
+|||.|+ .||-.+ .|+..|+|+|-+- .++|.++| ||- .+-++.|+.+.-..||.-.-+.|
T Consensus 276 leLL~ql---DGFD~~--------~nvKVI~ATNR~D-~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM 338 (406)
T COG1222 276 LELLNQL---DGFDPR--------GNVKVIMATNRPD-ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM 338 (406)
T ss_pred HHHHHhc---cCCCCC--------CCeEEEEecCCcc-ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc
Confidence 6777765 455433 3788899998652 35666664 332 37889999998888887765544
No 73
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.16 E-value=0.00082 Score=82.27 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=37.7
Q ss_pred ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
++.+|+|+|.+ ..+++.++| ||. .+.++.|+.+....|+..++..+
T Consensus 270 ~v~VI~aTn~~-~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~ 318 (389)
T PRK03992 270 NVKIIAATNRI-DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM 318 (389)
T ss_pred CEEEEEecCCh-hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC
Confidence 67889999887 468898887 774 59999999999999998776543
No 74
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.16 E-value=0.00039 Score=74.90 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=31.3
Q ss_pred cceeccCCCccchHhHHHHHhccC-cCcccceeeccccccC
Q psy4730 731 PMMFVGPTGTGKSTIVLNLLLNLS-KDKYLPNIINFSARTS 770 (1513)
Q Consensus 731 ~~ll~G~~g~GKt~~v~~~~~~~~-~~~~~~~~~~fs~~t~ 770 (1513)
.+||+||+|||||.+++.+...+. ++.-....++++..+.
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 578999999999999999988776 4444555677777665
No 75
>CHL00176 ftsH cell division protein; Validated
Probab=97.14 E-value=0.001 Score=85.71 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=36.7
Q ss_pred ceEEEEeecCCCCCCChhhhc--cc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HM-NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f-~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.++||+|.+. .++|+++| || ..+.++.|+.+....|+..++..
T Consensus 321 ~ViVIaaTN~~~-~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 321 GVIVIAATNRVD-ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred CeeEEEecCchH-hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh
Confidence 678899998874 47788887 56 46999999999999999987765
No 76
>KOG0738|consensus
Probab=97.14 E-value=0.0011 Score=77.00 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=37.9
Q ss_pred eEEEEeecCCCCCCChhhhccceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730 934 IIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 934 ~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
++.+||+|-|+ +|+..|+|||-= |||+-|+.+.-...+.-.|+..
T Consensus 353 VmVLAATN~PW-diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~ 398 (491)
T KOG0738|consen 353 VMVLAATNFPW-DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSV 398 (491)
T ss_pred EEEEeccCCCc-chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc
Confidence 56779999887 699999999986 9999999999888888766653
No 77
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.14 E-value=0.0023 Score=75.12 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=36.3
Q ss_pred ceEEEEeec-CCCCCCChhhhccceEeecCCCChHHHHHHHHH
Q psy4730 933 DIIYITAMI-PTMNTITGRLLRHMNIISIDSFNEATLSKIFTS 974 (1513)
Q Consensus 933 ~~~~~~a~~-~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~ 974 (1513)
.+.+|||+- +|-..+.|.+++|-.++.+.+.+.+++.++...
T Consensus 132 ~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 132 TIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred eEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 466776655 468899999999999999999999999999887
No 78
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.13 E-value=0.0005 Score=80.56 Aligned_cols=45 Identities=11% Similarity=0.018 Sum_probs=34.5
Q ss_pred cceEEEEeecCCCCCCChhhhc--cceEeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLR--HMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~--~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
..+.+|+|.|-| ..|+|.|+| ||-.++ .-|+.++...|+..+++.
T Consensus 267 ~~V~VIaTTNrp-d~LDpALlRpGRfDk~i-~lPd~e~R~eIL~~~~r~ 313 (413)
T PLN00020 267 PRVPIIVTGNDF-STLYAPLIRDGRMEKFY-WAPTREDRIGVVHGIFRD 313 (413)
T ss_pred CCceEEEeCCCc-ccCCHhHcCCCCCCcee-CCCCHHHHHHHHHHHhcc
Confidence 457778887654 358999999 887754 579999999999887654
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.12 E-value=0.0025 Score=79.47 Aligned_cols=44 Identities=9% Similarity=0.266 Sum_probs=35.4
Q ss_pred eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
+.+++|++.+. .+++++.+|+.++.+.+|+.+++..+...++..
T Consensus 148 vv~Ilattn~~-kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~ 191 (472)
T PRK14962 148 VVFVLATTNLE-KVPPTIISRCQVIEFRNISDELIIKRLQEVAEA 191 (472)
T ss_pred EEEEEEeCChH-hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHH
Confidence 45565655433 689999999999999999999999988887643
No 80
>KOG0744|consensus
Probab=97.12 E-value=0.00085 Score=76.02 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=35.5
Q ss_pred EEEEeecCCCCCCChhhhccceE-eecCCCChHHHHHHHHHHhhhhhhc
Q psy4730 935 IYITAMIPTMNTITGRLLRHMNI-ISIDSFNEATLSKIFTSVLDWHFSK 982 (1513)
Q Consensus 935 ~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~~l~~i~~~~l~~~~~~ 982 (1513)
.++.|+.+-..+|+..|.-|--+ .|+.+|+.+.+..||.+-+..+...
T Consensus 298 vliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~ 346 (423)
T KOG0744|consen 298 VLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISS 346 (423)
T ss_pred EEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhc
Confidence 34445555556677777776665 8999999999999999977765543
No 81
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.0021 Score=83.55 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=75.0
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
+..|..++.||+|+||||+.+++++.++--... ..++..| ....+..+++.+ .
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas-----------------~ 98 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAAS-----------------R 98 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecccc-----------------c
Confidence 346889999999999999999999998632110 0111111 011111122211 1
Q ss_pred cCHHHHHHHHhh----ccC-CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCC
Q psy4730 1419 DGILAKTFREMA----VST-TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFAS 1491 (1513)
Q Consensus 1419 DG~l~~~lR~~~----~~~-~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~as 1491 (1513)
.|+ ..+|+.. ..+ ....+-||+|. -+...-.+.|-..|++ .|++++||+-+++.....
T Consensus 99 ~kV--DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-------------PP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 99 TKV--DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-------------PPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCH--HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------------cCCCeEEEEECCCchhch
Confidence 221 2233322 111 24678899994 3344333444334443 367899999999999998
Q ss_pred cchhhccEEEEeeCC
Q psy4730 1492 PATVSRVGMIYFELK 1506 (1513)
Q Consensus 1492 PatvsRcg~v~~~~~ 1506 (1513)
|+..|||-.+.|.+-
T Consensus 164 ~TIlSRCq~f~fkpL 178 (944)
T PRK14949 164 VTVLSRCLQFNLKSL 178 (944)
T ss_pred HHHHHhheEEeCCCC
Confidence 888999999887653
No 82
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0021 Score=80.57 Aligned_cols=126 Identities=16% Similarity=0.168 Sum_probs=74.3
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhc-----ccccc---------cceeEEEecCCCCChhhccccccCCCC
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS-----ATMKE---------FKTGYKIINPKSITMGQLYGEFDSASH 1415 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~-----~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~ 1415 (1513)
..|++++.||+|+||||+.++++++++-...... ++..| ....+.-+++. ++
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaa--------------s~ 107 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAA--------------SK 107 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeecc--------------CC
Confidence 3579999999999999999999999974321100 01111 11122222221 11
Q ss_pred CCccCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCC
Q psy4730 1416 EWRDGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFA 1490 (1513)
Q Consensus 1416 eW~DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~a 1490 (1513)
-|+ .-+|+.. .. .....+-+|+|.. +-.--+.+|.+|.- |. ..|+++.|||-|++....
T Consensus 108 ---~~v--d~Ir~iie~a~~~P~~~~~KVvIIDEa-~~Ls~~a~naLLk~-----LE-----epp~~~vfI~aTte~~kI 171 (507)
T PRK06645 108 ---TSV--DDIRRIIESAEYKPLQGKHKIFIIDEV-HMLSKGAFNALLKT-----LE-----EPPPHIIFIFATTEVQKI 171 (507)
T ss_pred ---CCH--HHHHHHHHHHHhccccCCcEEEEEECh-hhcCHHHHHHHHHH-----Hh-----hcCCCEEEEEEeCChHHh
Confidence 121 2233321 11 1246688999962 22112445554421 11 147889999999999999
Q ss_pred CcchhhccEEEEeeC
Q psy4730 1491 SPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1491 sPatvsRcg~v~~~~ 1505 (1513)
.|+..|||..+.|.+
T Consensus 172 ~~tI~SRc~~~ef~~ 186 (507)
T PRK06645 172 PATIISRCQRYDLRR 186 (507)
T ss_pred hHHHHhcceEEEccC
Confidence 888899999888765
No 83
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0014 Score=83.41 Aligned_cols=134 Identities=20% Similarity=0.196 Sum_probs=73.7
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFR 1427 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR 1427 (1513)
+..|++++.||+|+||||+.++|+++++--.... .++..|. .+..++...+ -+++ .+|. ....|+ ..+|
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~--sCr~i~~g~~--~Dvl-Eida---As~~gV--d~IR 105 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ--SCTQIDAGRY--VDLL-EIDA---ASNTGI--DNIR 105 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH--HHHHHhccCc--cceE-EEec---cccCCH--HHHH
Confidence 3468999999999999999999999986321110 0011000 0011111100 0111 1121 122332 3344
Q ss_pred Hhhc----c-CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEE
Q psy4730 1428 EMAV----S-TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGM 1500 (1513)
Q Consensus 1428 ~~~~----~-~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~ 1500 (1513)
+... . .....+.+|+|. .++..-...|-..|++ .|+++.|||-+.+.....|..+|||-.
T Consensus 106 elle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE-------------Pp~~v~fILaTtd~~kL~~TIrSRC~~ 172 (709)
T PRK08691 106 EVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-------------PPEHVKFILATTDPHKVPVTVLSRCLQ 172 (709)
T ss_pred HHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh-------------CCCCcEEEEEeCCccccchHHHHHHhh
Confidence 4322 1 124678999996 2233222222222332 467899999999999998888999977
Q ss_pred EEeeC
Q psy4730 1501 IYFEL 1505 (1513)
Q Consensus 1501 v~~~~ 1505 (1513)
+.|.+
T Consensus 173 f~f~~ 177 (709)
T PRK08691 173 FVLRN 177 (709)
T ss_pred hhcCC
Confidence 76543
No 84
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.09 E-value=0.0017 Score=85.64 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=60.3
Q ss_pred hhccCCCCCccCCCCChHHHHHHHHhcC---CccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHH
Q psy4730 891 LDDLNMPQKETYGAQPAVELLRQIIDHK---HLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEAT 967 (1513)
Q Consensus 891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~---~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~ 967 (1513)
+||+....++..| .|...|-+++|-+ .|-|.---......++.|||+.|+. .|||.|+.||.++.+.+++.+.
T Consensus 422 lDEidk~~~~~~g--~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~--~i~~aLl~R~~ii~~~~~t~ee 497 (784)
T PRK10787 422 LDEIDKMSSDMRG--DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM--NIPAPLLDRMEVIRLSGYTEDE 497 (784)
T ss_pred EEChhhcccccCC--CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC--CCCHHHhcceeeeecCCCCHHH
Confidence 3888866555443 3666777777742 3333322223556788899877664 5999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy4730 968 LSKIFTSVLD 977 (1513)
Q Consensus 968 l~~i~~~~l~ 977 (1513)
+..|...+|.
T Consensus 498 k~~Ia~~~L~ 507 (784)
T PRK10787 498 KLNIAKRHLL 507 (784)
T ss_pred HHHHHHHhhh
Confidence 9999998874
No 85
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.09 E-value=0.0039 Score=74.05 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=52.6
Q ss_pred hhccCCCCCccCCCCChHHHHHHHHhcCCcc---ccC---CceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCC
Q psy4730 891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLY---DFQ---TVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSF 963 (1513)
Q Consensus 891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y---d~~---~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~ 963 (1513)
+||++.-.. ...|.|+.+++.+..- +.+ .........+.++++++.+ ..+++.+.+||.. +.+++|
T Consensus 87 iDEi~~l~~------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~-~~l~~~l~sR~~~~~~l~~l 159 (305)
T TIGR00635 87 IDEIHRLSP------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA-GMLTSPLRDRFGIILRLEFY 159 (305)
T ss_pred EehHhhhCH------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc-cccCHHHHhhcceEEEeCCC
Confidence 488873322 2467788887754321 111 0111223357788888776 4578889999954 689999
Q ss_pred ChHHHHHHHHHHhh
Q psy4730 964 NEATLSKIFTSVLD 977 (1513)
Q Consensus 964 ~~~~l~~i~~~~l~ 977 (1513)
+.+++..|+.....
T Consensus 160 ~~~e~~~il~~~~~ 173 (305)
T TIGR00635 160 TVEELAEIVSRSAG 173 (305)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987665
No 86
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0017 Score=81.68 Aligned_cols=140 Identities=18% Similarity=0.191 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh------hcccccc---------cceeEEEecCCCC
Q psy4730 1337 YIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK------KSATMKE---------FKTGYKIINPKSI 1401 (1513)
Q Consensus 1337 ~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~------~~~~~~~---------~~~~~~~inp~~~ 1401 (1513)
.+..+.+.+..-+..|..++.||+|+||||+.+.|++.++-.... ...+..| ...++..|++.+
T Consensus 24 vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas- 102 (700)
T PRK12323 24 VVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS- 102 (700)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc-
Confidence 333344444444557899999999999999999999999732110 0011111 111223333321
Q ss_pred ChhhccccccCCCCCCccCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCC
Q psy4730 1402 TMGQLYGEFDSASHEWRDGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSN 1476 (1513)
Q Consensus 1402 t~~eL~G~~~~~t~eW~DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~ 1476 (1513)
.-|+ .-+|+.. .. .....+-+|+|. +|-.=-+..|.+|. +|-. .|+
T Consensus 103 ----------------~~gV--DdIReLie~~~~~P~~gr~KViIIDE-ah~Ls~~AaNALLK-----TLEE-----PP~ 153 (700)
T PRK12323 103 ----------------NRGV--DEMAQLLDKAVYAPTAGRFKVYMIDE-VHMLTNHAFNAMLK-----TLEE-----PPE 153 (700)
T ss_pred ----------------cCCH--HHHHHHHHHHHhchhcCCceEEEEEC-hHhcCHHHHHHHHH-----hhcc-----CCC
Confidence 1222 2233332 22 234568899995 22222356666662 1111 467
Q ss_pred CCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730 1477 TMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1477 ~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
++.|||-|++.....|...|||-.+.|.+-
T Consensus 154 ~v~FILaTtep~kLlpTIrSRCq~f~f~~l 183 (700)
T PRK12323 154 HVKFILATTDPQKIPVTVLSRCLQFNLKQM 183 (700)
T ss_pred CceEEEEeCChHhhhhHHHHHHHhcccCCC
Confidence 899999999999999999999999887653
No 87
>KOG0733|consensus
Probab=97.08 E-value=0.0012 Score=80.30 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=56.5
Q ss_pred hccC--CCCCccCCCCChHHHHHHHHhc-CCccccCCceeeeecceEEEEeecCCCCCCChhhhc---cceEeecCCCCh
Q psy4730 892 DDLN--MPQKETYGAQPAVELLRQIIDH-KHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLR---HMNIISIDSFNE 965 (1513)
Q Consensus 892 dd~n--~p~~~~~~~q~~le~lr~~~~~-~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~---~f~~~~~~~~~~ 965 (1513)
|++- .|..++-|+...--++.||+.. .|.-++ ..+.+|||+|-|-. |+|.++| .=.++|++.|+.
T Consensus 611 DEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R--------~gV~viaATNRPDi-IDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 611 DEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER--------RGVYVIAATNRPDI-IDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cchhhcCcccCCCCchhHHHHHHHHHHHhcccccc--------cceEEEeecCCCcc-cchhhcCCCccCceeeecCCCH
Confidence 6665 6777777777777888888874 566555 36788899997632 5666663 235799999999
Q ss_pred HHHHHHHHHHhhh
Q psy4730 966 ATLSKIFTSVLDW 978 (1513)
Q Consensus 966 ~~l~~i~~~~l~~ 978 (1513)
++--.|...+.++
T Consensus 682 ~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 682 EERVAILKTITKN 694 (802)
T ss_pred HHHHHHHHHHhcc
Confidence 9988888887664
No 88
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.07 E-value=0.0021 Score=76.73 Aligned_cols=112 Identities=19% Similarity=0.171 Sum_probs=71.0
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
.+.+++.||+|+|||++.+.+++.++ ..+..+|+.. . . .+.+ ...+.+..
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~--------------~~~~~i~~~~-~-------------~-~~~i-~~~l~~~~ 92 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVG--------------AEVLFVNGSD-C-------------R-IDFV-RNRLTRFA 92 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhC--------------ccceEeccCc-c-------------c-HHHH-HHHHHHHH
Confidence 45677799999999999999987653 1234556543 1 0 1111 11122221
Q ss_pred cc--CCCCceEEEEcCC--C-ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730 1431 VS--TTPDRKWIMFDGP--I-DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1431 ~~--~~~~~~WivfDG~--~-d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
.. .....+-+|+|.. + ++...+.|.+.++. .++++++++.+.+.....|+..|||..+.++.
T Consensus 93 ~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~-------------~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~ 159 (316)
T PHA02544 93 STVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA-------------YSKNCSFIITANNKNGIIEPLRSRCRVIDFGV 159 (316)
T ss_pred HhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh-------------cCCCceEEEEcCChhhchHHHHhhceEEEeCC
Confidence 11 1134577888862 2 34455666666653 24678899988888889999999999998843
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0024 Score=81.47 Aligned_cols=140 Identities=15% Similarity=0.165 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh------cccccc---------cceeEEEecCCC
Q psy4730 1336 WYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK------SATMKE---------FKTGYKIINPKS 1400 (1513)
Q Consensus 1336 ~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~------~~~~~~---------~~~~~~~inp~~ 1400 (1513)
..+..+.+.+..-+..|..++.||+|+||||+.++|+++++-.+... .+++.| ...++..+|+.
T Consensus 23 ~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaa- 101 (618)
T PRK14951 23 HVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAA- 101 (618)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcc-
Confidence 33333444444445578999999999999999999999997422110 011111 11122222221
Q ss_pred CChhhccccccCCCCCCccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecC
Q psy4730 1401 ITMGQLYGEFDSASHEWRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMS 1475 (1513)
Q Consensus 1401 ~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~ 1475 (1513)
-..|+ .-+|+.. ..+ ....+.+|+|. +|-.=-+..|.+| |. |-+ .|
T Consensus 102 ----------------s~~~V--d~iReli~~~~~~p~~g~~KV~IIDE-vh~Ls~~a~NaLL---Kt--LEE-----PP 152 (618)
T PRK14951 102 ----------------SNRGV--DEVQQLLEQAVYKPVQGRFKVFMIDE-VHMLTNTAFNAML---KT--LEE-----PP 152 (618)
T ss_pred ----------------cccCH--HHHHHHHHHHHhCcccCCceEEEEEC-hhhCCHHHHHHHH---Hh--ccc-----CC
Confidence 11232 2234332 222 24578999995 2222234556555 11 111 46
Q ss_pred CCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730 1476 NTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1476 ~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
+++.|||-|+|....-|+..|||-.+.|.+
T Consensus 153 ~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~ 182 (618)
T PRK14951 153 EYLKFVLATTDPQKVPVTVLSRCLQFNLRP 182 (618)
T ss_pred CCeEEEEEECCchhhhHHHHHhceeeecCC
Confidence 788999999999999889999999998865
No 90
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.05 E-value=0.0015 Score=81.71 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=35.5
Q ss_pred EEEEeecCC--CCCCChhhhccc---eEeecCCCChHHHHHHHHHHhhh
Q psy4730 935 IYITAMIPT--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 935 ~~~~a~~~~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+++|..|| -..+.+|+.+|| .++.+.+|+.+++..|.......
T Consensus 247 iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 247 IVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred EEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 355666666 345899999999 47999999999999999987764
No 91
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.03 E-value=0.0053 Score=78.13 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=40.8
Q ss_pred cceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.|+.+++|++..-..++|.+++|+..+.+++++.+++..|....+..
T Consensus 232 ~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 232 ADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred cceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH
Confidence 48899988887656799999999999999999999999999987654
No 92
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.01 E-value=0.0012 Score=67.54 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=20.8
Q ss_pred ceeccCCCccchHhHHHHHhccC
Q psy4730 732 MMFVGPTGTGKSTIVLNLLLNLS 754 (1513)
Q Consensus 732 ~ll~G~~g~GKt~~v~~~~~~~~ 754 (1513)
+||.||+|||||++++.+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999998763
No 93
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.99 E-value=0.0019 Score=80.58 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=59.5
Q ss_pred HHHhhccCCCCCccCCCCChHHHHHHHHhcCCcc-ccCCceeeeecceEEEEeecCCC--------------------CC
Q psy4730 888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLY-DFQTVTRVDLVDIIYITAMIPTM--------------------NT 946 (1513)
Q Consensus 888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y-d~~~~~~~~~~~~~~~~a~~~~~--------------------~~ 946 (1513)
.+|+||++-... ..++.||+.++.|.++ ++.......-.+++++|||||.- ..
T Consensus 297 vLfLDEi~e~~~------~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ 370 (506)
T PRK09862 297 VLFLDELPEFER------RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNR 370 (506)
T ss_pred EEecCCchhCCH------HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhh
Confidence 467899985432 4899999999999997 55566666677999999999951 35
Q ss_pred CChhhhccceE-eecCCCChHHH
Q psy4730 947 ITGRLLRHMNI-ISIDSFNEATL 968 (1513)
Q Consensus 947 ~~~r~~~~f~~-~~~~~~~~~~l 968 (1513)
+++.++.||-+ +.+++|+.+.+
T Consensus 371 ls~plLDRfdL~v~v~~~~~~~l 393 (506)
T PRK09862 371 LSGPFLDRFDLSLEIPLPPPGIL 393 (506)
T ss_pred CCHhHHhhccEEEEeCCCCHHHH
Confidence 88899999999 78998887743
No 94
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.99 E-value=0.0029 Score=76.13 Aligned_cols=127 Identities=20% Similarity=0.220 Sum_probs=71.4
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccc------cCCCC-CCc-------
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEF------DSASH-EWR------- 1418 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~------~~~t~-eW~------- 1418 (1513)
++++.||+||||||+.+.+++.+..-.. ...+..+|... +++.. +|.-. .+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~---------~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPW---------ENNFTEFNVAD-----FFDQGKKYLVEDPRFAHFLGTDKRIRS 103 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCccc---------ccceEEechhh-----hhhcchhhhhcCcchhhhhhhhhhhcc
Confidence 7999999999999999999988753110 01223334321 11110 00000 000
Q ss_pred --cCHHHHHHHHhhcc--CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730 1419 --DGILAKTFREMAVS--TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus 1419 --DG~l~~~lR~~~~~--~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
...+..+++..... .....+-||+|. .+++...+.|..+|++. ++++++||-+++....-|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~-------------~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 104 SKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY-------------SRTCRFIIATRQPSKLIP 170 (337)
T ss_pred chHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc-------------cCCCeEEEEeCChhhCch
Confidence 11222222222211 123456799995 34555666677666532 345677777666666677
Q ss_pred chhhccEEEEeeCC
Q psy4730 1493 ATVSRVGMIYFELK 1506 (1513)
Q Consensus 1493 atvsRcg~v~~~~~ 1506 (1513)
+..|||..+.+.+-
T Consensus 171 ~L~sr~~~v~~~~~ 184 (337)
T PRK12402 171 PIRSRCLPLFFRAP 184 (337)
T ss_pred hhcCCceEEEecCC
Confidence 88899999988654
No 95
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.0043 Score=78.02 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=74.7
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccc---------ccceeEEEecCCCCChhhccccccCCCCCCccC
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMK---------EFKTGYKIINPKSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~---------~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
..|.++++||+|+||||+.+.+++++.-.+.....+.. .....+..||+.. ..|
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~-----------------~~~ 97 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS-----------------NNS 97 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc-----------------cCC
Confidence 35788999999999999999999998632211111111 1122334444321 012
Q ss_pred HHHHHHHHh----hc-cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh
Q psy4730 1421 ILAKTFREM----AV-STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 1495 (1513)
Q Consensus 1421 ~l~~~lR~~----~~-~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv 1495 (1513)
+ ..+|+. .. .....++.+|+|.+ |..--+.+|.+|.. |.+ .++++.+||-+.+.....|+..
T Consensus 98 v--d~iR~l~~~~~~~p~~~~~kVVIIDEa-d~ls~~a~naLLk~-----LEe-----p~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 98 V--EDVRDLREKVLLAPLRGGRKVYILDEA-HMMSKSAFNALLKT-----LEE-----PPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred H--HHHHHHHHHHhhccccCCCeEEEEECc-cccCHHHHHHHHHH-----HHh-----CCCCEEEEEEcCChhhCChHHh
Confidence 1 223332 11 12346789999974 32223444444321 111 2567788888888888899999
Q ss_pred hccEEEEeeC
Q psy4730 1496 SRVGMIYFEL 1505 (1513)
Q Consensus 1496 sRcg~v~~~~ 1505 (1513)
|||..+.|.+
T Consensus 165 SRc~~~~f~~ 174 (504)
T PRK14963 165 SRTQHFRFRR 174 (504)
T ss_pred cceEEEEecC
Confidence 9999999875
No 96
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.96 E-value=0.0051 Score=73.46 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=42.7
Q ss_pred hHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 907 AVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 907 ~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
..+.|+.+++.. -.++.++.+++.+ ..+.+.+.+||..+.++.|+.+....+...++..
T Consensus 117 ~~~~L~~~le~~------------~~~~~~Ilt~n~~-~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 117 AQRHLRSFMEAY------------SKNCSFIITANNK-NGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred HHHHHHHHHHhc------------CCCceEEEEcCCh-hhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHH
Confidence 456677766631 1245677777754 4688999999999999999999888777765443
No 97
>PRK06893 DNA replication initiation factor; Validated
Probab=96.96 E-value=0.003 Score=71.68 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=32.9
Q ss_pred EEEeecCC--CCCCChhhhccce---EeecCCCChHHHHHHHHHHhh
Q psy4730 936 YITAMIPT--MNTITGRLLRHMN---IISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 936 ~~~a~~~~--~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
++++..+| .....|++.+|+. ++.+.+|+.++...|+.....
T Consensus 129 lits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 129 LISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred EEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 44555555 4556699999997 889999999999999987554
No 98
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.96 E-value=0.0012 Score=78.36 Aligned_cols=139 Identities=22% Similarity=0.307 Sum_probs=91.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccc------c--------cce----eEEEecCCCCChhhccccccCC
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMK------E--------FKT----GYKIINPKSITMGQLYGEFDSA 1413 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~------~--------~~~----~~~~inp~~~t~~eL~G~~~~~ 1413 (1513)
++|+|.|++|+||||+.+.|++.+..+......+.. + ... .-.+=-|...|.+.|+|.+|-.
T Consensus 30 ~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~ 109 (334)
T PRK13407 30 GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIE 109 (334)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhh
Confidence 789999999999999999999998543221111000 0 000 0011246667788899987754
Q ss_pred C----C--CCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730 1414 S----H--EWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus 1414 t----~--eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
. + .++.|.+.++ ..--+++| ..+++.-.+.|-.+|++.....-..|...+.|..+.++. +.
T Consensus 110 ~~l~~g~~~~~~G~l~~A----------~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviA-t~ 178 (334)
T PRK13407 110 RALTRGEKAFEPGLLARA----------NRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVG-SG 178 (334)
T ss_pred hhhhcCCeeecCCceEEc----------CCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEe-cC
Confidence 2 2 2556655321 12468888 466888888888899887765556788888887655444 55
Q ss_pred CC-C-CCCcchhhccEEE
Q psy4730 1486 NL-E-FASPATVSRVGMI 1501 (1513)
Q Consensus 1486 ~l-~-~asPatvsRcg~v 1501 (1513)
|. . ...|+...|+++.
T Consensus 179 NP~e~~l~~aLldRF~~~ 196 (334)
T PRK13407 179 NPEEGELRPQLLDRFGLS 196 (334)
T ss_pred CcccCCCCHHHHhhcceE
Confidence 54 3 4788899999864
No 99
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.95 E-value=0.0038 Score=77.69 Aligned_cols=89 Identities=15% Similarity=0.312 Sum_probs=56.5
Q ss_pred HHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCChhhhccce---EeecCC
Q psy4730 888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHMN---IISIDS 962 (1513)
Q Consensus 888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f~---~~~~~~ 962 (1513)
.+++||+..-.. .....|.+..+++. .|+.++ -.++++-.|| ...+.+|+.+||. ++-+.+
T Consensus 209 vLiIDDiq~l~~----k~~~~e~lf~l~N~--~~~~~k--------~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~ 274 (450)
T PRK14087 209 VLIIDDVQFLSY----KEKTNEIFFTIFNN--FIENDK--------QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQK 274 (450)
T ss_pred EEEEeccccccC----CHHHHHHHHHHHHH--HHHcCC--------cEEEECCCCHHHHhhccHHHHHHHhCCceeccCC
Confidence 455699964432 22345556555553 233322 1345555666 5679999999997 788999
Q ss_pred CChHHHHHHHHHHhhhhhh-ccchhHHHH
Q psy4730 963 FNEATLSKIFTSVLDWHFS-KGFADSIVK 990 (1513)
Q Consensus 963 ~~~~~l~~i~~~~l~~~~~-~~f~~~~~~ 990 (1513)
|+.++...|....+...-. ..+++++..
T Consensus 275 pd~e~r~~iL~~~~~~~gl~~~l~~evl~ 303 (450)
T PRK14087 275 LDNKTATAIIKKEIKNQNIKQEVTEEAIN 303 (450)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 9999999999987764211 135555444
No 100
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.95 E-value=0.0014 Score=80.46 Aligned_cols=134 Identities=21% Similarity=0.214 Sum_probs=74.4
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
..|++++.||+|+||||+.+++|++++--... ..++..|.. +..++.... .+ +..+|+.+ ..|+ .-+|+
T Consensus 39 i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s--C~~i~~g~~--~d-viEIdaas---~~gV--d~IRe 108 (484)
T PRK14956 39 IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS--CLEITKGIS--SD-VLEIDAAS---NRGI--ENIRE 108 (484)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH--HHHHHccCC--cc-ceeechhh---cccH--HHHHH
Confidence 35679999999999999999999998642111 001111100 011111100 00 11233211 1122 22333
Q ss_pred h----hcc-CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEE
Q psy4730 1429 M----AVS-TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMI 1501 (1513)
Q Consensus 1429 ~----~~~-~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v 1501 (1513)
. ... .....+-+|+|. -++. +..|.+|- .| |. .|.++.||+-|++.....|+-.|||..+
T Consensus 109 L~e~l~~~p~~g~~KV~IIDEah~Ls~---~A~NALLK---tL-----EE--Pp~~viFILaTte~~kI~~TI~SRCq~~ 175 (484)
T PRK14956 109 LRDNVKFAPMGGKYKVYIIDEVHMLTD---QSFNALLK---TL-----EE--PPAHIVFILATTEFHKIPETILSRCQDF 175 (484)
T ss_pred HHHHHHhhhhcCCCEEEEEechhhcCH---HHHHHHHH---Hh-----hc--CCCceEEEeecCChhhccHHHHhhhhee
Confidence 2 111 123567899994 2233 44555431 11 11 3678899999999999999999999998
Q ss_pred EeeCC
Q psy4730 1502 YFELK 1506 (1513)
Q Consensus 1502 ~~~~~ 1506 (1513)
.|.+-
T Consensus 176 ~f~~l 180 (484)
T PRK14956 176 IFKKV 180 (484)
T ss_pred eecCC
Confidence 87653
No 101
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.93 E-value=0.0033 Score=77.69 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=34.2
Q ss_pred EEEeecCC--CCCCChhhhccce---EeecCCCChHHHHHHHHHHhhh
Q psy4730 936 YITAMIPT--MNTITGRLLRHMN---IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 936 ~~~a~~~~--~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++++..+| -..+.+|+.+||. .+.+++|+.++...|....+..
T Consensus 236 iits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 236 VLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred EEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 44555555 4568999999995 6999999999999999987654
No 102
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.027 Score=71.20 Aligned_cols=45 Identities=9% Similarity=0.105 Sum_probs=34.6
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.+++.+++ +++.+++|...+.+.+++.+++......++..
T Consensus 149 ~~~fIlattd~~k-l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~ 193 (509)
T PRK14958 149 HVKFILATTDHHK-LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE 193 (509)
T ss_pred CeEEEEEECChHh-chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Confidence 4566767765544 56669999999999999999988887777654
No 103
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.93 E-value=0.0039 Score=82.71 Aligned_cols=80 Identities=20% Similarity=0.337 Sum_probs=59.6
Q ss_pred hccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------------------------CCCC
Q psy4730 892 DDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------MNTI 947 (1513)
Q Consensus 892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------~~~~ 947 (1513)
||+....++ +...|-|++|.|.+-|.. ...+...+..+|++.|.. +..+
T Consensus 560 DEieka~~~------~~~~Ll~~ld~g~~~d~~-g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f 632 (731)
T TIGR02639 560 DEIEKAHPD------IYNILLQVMDYATLTDNN-GRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLF 632 (731)
T ss_pred echhhcCHH------HHHHHHHhhccCeeecCC-CcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhc
Confidence 777755433 788999999988776543 344556677788877653 1246
Q ss_pred Chhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 948 TGRLLRHMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 948 ~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
+|.|++|+. ++.+.+.+.+++.+|....+..
T Consensus 633 ~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 633 SPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred ChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 889999995 7889999999999999987654
No 104
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.93 E-value=0.006 Score=78.19 Aligned_cols=90 Identities=12% Similarity=0.241 Sum_probs=56.1
Q ss_pred HHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCChhhhccceE--eecCCC
Q psy4730 888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHMNI--ISIDSF 963 (1513)
Q Consensus 888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f~~--~~~~~~ 963 (1513)
.++|||+..-... .| +.|..+++--+. .+ ..+.+||.+|+. ...+.||+.+||.. +..+++
T Consensus 872 IIILDEID~L~kK---~Q---DVLYnLFR~~~~--s~-------SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PY 936 (1164)
T PTZ00112 872 ILIIDEIDYLITK---TQ---KVLFTLFDWPTK--IN-------SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPY 936 (1164)
T ss_pred EEEeehHhhhCcc---HH---HHHHHHHHHhhc--cC-------CeEEEEEecCchhcchhhhhhhhhccccccccCCCC
Confidence 3567888843322 12 445555552111 11 136778888874 34577899998865 777999
Q ss_pred ChHHHHHHHHHHhhhhhhccchhHHHHHHH
Q psy4730 964 NEATLSKIFTSVLDWHFSKGFADSIVKLSK 993 (1513)
Q Consensus 964 ~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~ 993 (1513)
+.++|..|...-+... ..-+.+++..++.
T Consensus 937 TaEQL~dILk~RAe~A-~gVLdDdAIELIA 965 (1164)
T PTZ00112 937 KGDEIEKIIKERLENC-KEIIDHTAIQLCA 965 (1164)
T ss_pred CHHHHHHHHHHHHHhC-CCCCCHHHHHHHH
Confidence 9999999999877653 1235555554443
No 105
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.90 E-value=0.0022 Score=78.07 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=36.0
Q ss_pred ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.+++|+|.+ ..+++.++| ||. .+.++.|+.+....|+..++..
T Consensus 261 ~v~vI~ttn~~-~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~ 308 (364)
T TIGR01242 261 NVKVIAATNRP-DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK 308 (364)
T ss_pred CEEEEEecCCh-hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc
Confidence 67888999876 468888886 664 5899999999999999876544
No 106
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.90 E-value=0.02 Score=75.93 Aligned_cols=133 Identities=15% Similarity=0.147 Sum_probs=80.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCC-CChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS-ITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~-~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
..++|+||||+||||+.+.++++++. .+.+++-.. .+..++.|.-.. -.+=..|-+...++++.
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~--------------~~~~i~~~~~~d~~~i~g~~~~-~~g~~~G~~~~~l~~~~ 414 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGR--------------KYVRMALGGVRDEAEIRGHRRT-YIGSMPGKLIQKMAKVG 414 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC--------------CEEEEEcCCCCCHHHhccchhc-cCCCCCcHHHHHHHhcC
Confidence 47999999999999999999998763 234444332 334556554210 00113465555665542
Q ss_pred ccCCCCceEEEEcCC--CChH----HHHhhhcccCCCCceeecC--CCe-eecCCCCeEEEeecCCCCCCcchhhccEEE
Q psy4730 1431 VSTTPDRKWIMFDGP--IDAV----WIENMNTVLDDNKKLCLIN--GEI-IKMSNTMNLIFECENLEFASPATVSRVGMI 1501 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG~--~d~~----wiE~LNsvLDdn~~L~L~n--Ge~-i~~~~~~~~iFE~~~l~~asPatvsRcg~v 1501 (1513)
....-|++|-. +.+. -...|-.+||++...+... .+. +.+ +++.+|. |.|-...+||..+||-+|
T Consensus 415 ----~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl-s~v~~i~-TaN~~~i~~aLl~R~~ii 488 (784)
T PRK10787 415 ----VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL-SDVMFVA-TSNSMNIPAPLLDRMEVI 488 (784)
T ss_pred ----CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccC-CceEEEE-cCCCCCCCHHHhcceeee
Confidence 12235888831 1111 1577888888765555433 221 222 3554444 667678999999999998
Q ss_pred EeeC
Q psy4730 1502 YFEL 1505 (1513)
Q Consensus 1502 ~~~~ 1505 (1513)
.+.+
T Consensus 489 ~~~~ 492 (784)
T PRK10787 489 RLSG 492 (784)
T ss_pred ecCC
Confidence 7654
No 107
>PRK04195 replication factor C large subunit; Provisional
Probab=96.90 E-value=0.006 Score=77.11 Aligned_cols=112 Identities=19% Similarity=0.162 Sum_probs=68.6
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
.++++|.||||+||||++++|++.++ ..+..+|+..... ...+..++...+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~--------------~~~ielnasd~r~---------------~~~i~~~i~~~~ 89 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG--------------WEVIELNASDQRT---------------ADVIERVAGEAA 89 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC--------------CCEEEEccccccc---------------HHHHHHHHHHhh
Confidence 57999999999999999999988764 2334455432110 012233333332
Q ss_pred ccC--C-CCceEEEEcC------CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc-chhhccEE
Q psy4730 1431 VST--T-PDRKWIMFDG------PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP-ATVSRVGM 1500 (1513)
Q Consensus 1431 ~~~--~-~~~~WivfDG------~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP-atvsRcg~ 1500 (1513)
... . ...+-||+|. .-|...++.|..+++.. +..+|+-+.+.....| ...+||..
T Consensus 90 ~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~---------------~~~iIli~n~~~~~~~k~Lrsr~~~ 154 (482)
T PRK04195 90 TSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA---------------KQPIILTANDPYDPSLRELRNACLM 154 (482)
T ss_pred ccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC---------------CCCEEEeccCccccchhhHhccceE
Confidence 211 1 2568899983 12335667777776532 2345665666666666 56689999
Q ss_pred EEeeCC
Q psy4730 1501 IYFELK 1506 (1513)
Q Consensus 1501 v~~~~~ 1506 (1513)
|.|.+-
T Consensus 155 I~f~~~ 160 (482)
T PRK04195 155 IEFKRL 160 (482)
T ss_pred EEecCC
Confidence 998764
No 108
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.89 E-value=0.0081 Score=64.61 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=30.7
Q ss_pred hhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730 716 CMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS 754 (1513)
Q Consensus 716 ~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~ 754 (1513)
.+....++.+.....|||++|++||||+.+++..-....
T Consensus 9 ~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 9 KRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp HHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 345556777788999999999999999999998876543
No 109
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.89 E-value=0.002 Score=80.09 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=34.6
Q ss_pred EEEEeecCC--CCCCChhhhccce---EeecCCCChHHHHHHHHHHhhh
Q psy4730 935 IYITAMIPT--MNTITGRLLRHMN---IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 935 ~~~~a~~~~--~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++++..+| -..+.+|+.+||. ++.+.+|+.++...|.......
T Consensus 230 iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 230 IVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred EEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 344444555 3468899999998 8999999999999999887653
No 110
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.88 E-value=0.0038 Score=79.89 Aligned_cols=141 Identities=17% Similarity=0.195 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhc------cccc---------ccceeEEEecCC
Q psy4730 1335 DWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS------ATMK---------EFKTGYKIINPK 1399 (1513)
Q Consensus 1335 ~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~------~~~~---------~~~~~~~~inp~ 1399 (1513)
+..+..+.+.+..-+..|++|+.||+|+||||+.+.|+++++-...... ++.. ..+.++..++|.
T Consensus 30 ~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~ 109 (598)
T PRK09111 30 EAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAA 109 (598)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEeccc
Confidence 3444444445555556789999999999999999999999863221110 1111 122334444543
Q ss_pred CCChhhccccccCCCCCCccCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeec
Q psy4730 1400 SITMGQLYGEFDSASHEWRDGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKM 1474 (1513)
Q Consensus 1400 ~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~ 1474 (1513)
+.+ | ..-+|+.. .. ....++-||+|. +|..--+..|.+|. +|- ..
T Consensus 110 s~~-----------------g--vd~IReIie~~~~~P~~a~~KVvIIDE-ad~Ls~~a~naLLK-----tLE-----eP 159 (598)
T PRK09111 110 SHT-----------------G--VDDIREIIESVRYRPVSARYKVYIIDE-VHMLSTAAFNALLK-----TLE-----EP 159 (598)
T ss_pred ccC-----------------C--HHHHHHHHHHHHhchhcCCcEEEEEEC-hHhCCHHHHHHHHH-----HHH-----hC
Confidence 211 1 12233332 11 134568899996 22222234444441 111 14
Q ss_pred CCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730 1475 SNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1475 ~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
|+++.|||-+++.....|...|||-.+.|.+
T Consensus 160 p~~~~fIl~tte~~kll~tI~SRcq~~~f~~ 190 (598)
T PRK09111 160 PPHVKFIFATTEIRKVPVTVLSRCQRFDLRR 190 (598)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEecC
Confidence 7789999999999998888899999988765
No 111
>CHL00181 cbbX CbbX; Provisional
Probab=96.88 E-value=0.0023 Score=74.93 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=68.9
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhcc
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 1432 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~ 1432 (1513)
.+++.||||||||++.+.+++.+..++-... ..+..++ ..+|.|.+--.+. .-...+++++
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~-------~~~~~v~-----~~~l~~~~~g~~~----~~~~~~l~~a--- 121 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKK-------GHLLTVT-----RDDLVGQYIGHTA----PKTKEVLKKA--- 121 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCC-------CceEEec-----HHHHHHHHhccch----HHHHHHHHHc---
Confidence 4899999999999999999988764321110 1122233 3445554421110 0112233332
Q ss_pred CCCCceEEEEcC-----------CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec-----CCCCCCcchhh
Q psy4730 1433 TTPDRKWIMFDG-----------PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE-----NLEFASPATVS 1496 (1513)
Q Consensus 1433 ~~~~~~WivfDG-----------~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~-----~l~~asPatvs 1496 (1513)
...-+++|. +...+-++.|..++|+.+ +++.+|+.+. .+-...|+..|
T Consensus 122 ---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~~~~~~~~np~L~s 185 (287)
T CHL00181 122 ---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDRMDKFYESNPGLSS 185 (287)
T ss_pred ---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhcCHHHHH
Confidence 124667773 134667888888888753 4566666553 22344699999
Q ss_pred ccE-EEEeeC
Q psy4730 1497 RVG-MIYFEL 1505 (1513)
Q Consensus 1497 Rcg-~v~~~~ 1505 (1513)
||. .|+|++
T Consensus 186 R~~~~i~F~~ 195 (287)
T CHL00181 186 RIANHVDFPD 195 (287)
T ss_pred hCCceEEcCC
Confidence 998 466665
No 112
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.024 Score=69.90 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=36.1
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.|++.+ ..|++.+++|+..+.+..++.+++......++..
T Consensus 151 ~viFILaTte~-~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 151 HIVFILATTEF-HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred ceEEEeecCCh-hhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence 45677777664 4789999999999999999999988877776553
No 113
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.88 E-value=0.038 Score=70.99 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=49.4
Q ss_pred hhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHH
Q psy4730 891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSK 970 (1513)
Q Consensus 891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~ 970 (1513)
|||+.|-..+ ..-.||+.+.+. -..+.||.+++.+ ..|++-+++|+..+.+..++.+.+..
T Consensus 125 IDEah~LT~~-----A~NALLKtLEEP-------------P~~v~FILaTtd~-~KIp~TIrSRCq~f~Fk~Ls~eeIv~ 185 (830)
T PRK07003 125 IDEVHMLTNH-----AFNAMLKTLEEP-------------PPHVKFILATTDP-QKIPVTVLSRCLQFNLKQMPAGHIVS 185 (830)
T ss_pred EeChhhCCHH-----HHHHHHHHHHhc-------------CCCeEEEEEECCh-hhccchhhhheEEEecCCcCHHHHHH
Confidence 5888766533 123466655552 1246677777765 35778899999999999999999998
Q ss_pred HHHHHhhh
Q psy4730 971 IFTSVLDW 978 (1513)
Q Consensus 971 i~~~~l~~ 978 (1513)
....++..
T Consensus 186 ~L~~Il~~ 193 (830)
T PRK07003 186 HLERILGE 193 (830)
T ss_pred HHHHHHHH
Confidence 88887653
No 114
>KOG0730|consensus
Probab=96.87 E-value=0.0017 Score=80.33 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=39.8
Q ss_pred cceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDWHF 980 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~~~ 980 (1513)
.++.++||+|-|- .|++.++| ||- ++|++.|+.++-..|+...++.+-
T Consensus 569 k~V~ViAATNRpd-~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 569 KNVLVIAATNRPD-MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred CcEEEEeccCChh-hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC
Confidence 4788999999662 37888888 775 599999999999999999877653
No 115
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.87 E-value=0.0023 Score=84.48 Aligned_cols=139 Identities=22% Similarity=0.282 Sum_probs=78.4
Q ss_pred HHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccccceeEEEecC---CCCChhhccccccCCCCCCccC
Q psy4730 1345 YEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKEFKTGYKIINP---KSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus 1345 ~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~~~~~~~~inp---~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
++.-+..|..|+.||+||||||+.++|++.++-..+. ...+..|.. |..|+. ...+.-++ |..+. -|
T Consensus 31 i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s--C~~~~~g~~~~~dv~ei----daas~---~~ 101 (824)
T PRK07764 31 LDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS--CVALAPGGPGSLDVTEI----DAASH---GG 101 (824)
T ss_pred HHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH--HHHHHcCCCCCCcEEEe----ccccc---CC
Confidence 3334457899999999999999999999998631111 111111110 111111 11111111 11000 01
Q ss_pred HHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeee-cCCCCeEEEeecCCCCCCcch
Q psy4730 1421 ILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIK-MSNTMNLIFECENLEFASPAT 1494 (1513)
Q Consensus 1421 ~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~-~~~~~~~iFE~~~l~~asPat 1494 (1513)
..-+|+.. .. .....+-||+|. +|-.=-+..|.+|. .|. .|+++.|||-+++...+-|+.
T Consensus 102 --Vd~iR~l~~~~~~~p~~~~~KV~IIDE-ad~lt~~a~NaLLK-----------~LEEpP~~~~fIl~tt~~~kLl~TI 167 (824)
T PRK07764 102 --VDDARELRERAFFAPAESRYKIFIIDE-AHMVTPQGFNALLK-----------IVEEPPEHLKFIFATTEPDKVIGTI 167 (824)
T ss_pred --HHHHHHHHHHHHhchhcCCceEEEEec-hhhcCHHHHHHHHH-----------HHhCCCCCeEEEEEeCChhhhhHHH
Confidence 22334332 11 234678899994 11111255566551 111 577899999999998888889
Q ss_pred hhccEEEEeeCC
Q psy4730 1495 VSRVGMIYFELK 1506 (1513)
Q Consensus 1495 vsRcg~v~~~~~ 1506 (1513)
.|||-++.|.+-
T Consensus 168 rSRc~~v~F~~l 179 (824)
T PRK07764 168 RSRTHHYPFRLV 179 (824)
T ss_pred HhheeEEEeeCC
Confidence 999999998753
No 116
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.86 E-value=0.0087 Score=66.10 Aligned_cols=64 Identities=9% Similarity=0.095 Sum_probs=47.0
Q ss_pred hHHHHHHHHhc-CCccccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730 907 AVELLRQIIDH-KHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 907 ~le~lr~~~~~-~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
+-|..+.|+.. .|.-++ +.+..|||+|.|. -++|.+.+||-. +-..-|+.+....|...+...+
T Consensus 235 VsEiVNALLTelDgi~en--------eGVvtIaaTN~p~-~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~ 300 (368)
T COG1223 235 VSEIVNALLTELDGIKEN--------EGVVTIAATNRPE-LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF 300 (368)
T ss_pred HHHHHHHHHHhccCcccC--------CceEEEeecCChh-hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC
Confidence 45666676663 344332 3677888888763 488999999987 8888899999999998886653
No 117
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.0029 Score=75.35 Aligned_cols=134 Identities=18% Similarity=0.152 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCC
Q psy4730 1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEW 1417 (1513)
Q Consensus 1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW 1417 (1513)
+..+.+-...-+..|+.+++||.|+||||+.+.+++++.-.... ....+++.+.|. -| ..
T Consensus 13 ~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~------~~h~D~~~~~~~-------~~------~~- 72 (313)
T PRK05564 13 KNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQ------REYVDIIEFKPI-------NK------KS- 72 (313)
T ss_pred HHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCC------CCCCCeEEeccc-------cC------CC-
Confidence 33333444444567899999999999999999999887421100 011223333331 01 00
Q ss_pred ccCHHHHHHHHhhc----c-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730 1418 RDGILAKTFREMAV----S-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus 1418 ~DG~l~~~lR~~~~----~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
+=..-+|+... . ....++.+|+|. +|..=.++-|++| -+|.+ .|+++.+|+-+++...+-|
T Consensus 73 ---i~v~~ir~~~~~~~~~p~~~~~kv~iI~~-ad~m~~~a~naLL-----K~LEe-----pp~~t~~il~~~~~~~ll~ 138 (313)
T PRK05564 73 ---IGVDDIRNIIEEVNKKPYEGDKKVIIIYN-SEKMTEQAQNAFL-----KTIEE-----PPKGVFIILLCENLEQILD 138 (313)
T ss_pred ---CCHHHHHHHHHHHhcCcccCCceEEEEec-hhhcCHHHHHHHH-----HHhcC-----CCCCeEEEEEeCChHhCcH
Confidence 11233555432 2 234678888887 2222234555565 12222 5778899999999999999
Q ss_pred chhhccEEEEeeC
Q psy4730 1493 ATVSRVGMIYFEL 1505 (1513)
Q Consensus 1493 atvsRcg~v~~~~ 1505 (1513)
+-.|||-++.|.+
T Consensus 139 TI~SRc~~~~~~~ 151 (313)
T PRK05564 139 TIKSRCQIYKLNR 151 (313)
T ss_pred HHHhhceeeeCCC
Confidence 9999999999875
No 118
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.85 E-value=0.0024 Score=80.94 Aligned_cols=85 Identities=12% Similarity=0.240 Sum_probs=57.7
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCc-cccCCceeeeecceEEEEeecCC--CC----------CCChhhhccc
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPT--MN----------TITGRLLRHM 955 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~--~~----------~~~~r~~~~f 955 (1513)
+++||+|.-.. .....|.+.++.+.. ..+.......-.++.++||+||- +. .+|+.+++||
T Consensus 304 l~iDEi~~l~~------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRF 377 (509)
T smart00350 304 CCIDEFDKMDD------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRF 377 (509)
T ss_pred EEEechhhCCH------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCce
Confidence 45699984332 235566667776654 23333333333589999999996 21 7999999999
Q ss_pred eE--eecCCCChHHHHHHHHHHhhhh
Q psy4730 956 NI--ISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 956 ~~--~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
-+ +..++|+.+.-..|...++..+
T Consensus 378 dLi~~~~d~~~~~~d~~i~~~i~~~~ 403 (509)
T smart00350 378 DLLFVVLDEVDEERDRELAKHVVDLH 403 (509)
T ss_pred eeEEEecCCCChHHHHHHHHHHHHhh
Confidence 66 5568899988888887776543
No 119
>PRK08727 hypothetical protein; Validated
Probab=96.84 E-value=0.0023 Score=72.74 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=31.1
Q ss_pred EeecCC--CCCCChhhhccc---eEeecCCCChHHHHHHHHHHh
Q psy4730 938 TAMIPT--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSVL 976 (1513)
Q Consensus 938 ~a~~~~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l 976 (1513)
++-.|| ...+.|++.+|| .++.+++|+.+++..|.....
T Consensus 132 ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 132 TARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred ECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 344455 567889999995 578999999999999999754
No 120
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.0061 Score=72.17 Aligned_cols=140 Identities=18% Similarity=0.212 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccc
Q psy4730 1339 EKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYG 1408 (1513)
Q Consensus 1339 ~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G 1408 (1513)
..+.+.++.-+..|+.++.||+|+||+++.+.+|+++.-.... ..+++.| .+.+++.+.|.. |
T Consensus 12 ~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-------~ 84 (325)
T PRK06871 12 QQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID-------N 84 (325)
T ss_pred HHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc-------C
Confidence 3344444445667999999999999999999999998632211 1122221 344556666531 0
Q ss_pred cccCCCCCCccCHHHHHHHHhhc-----cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEe
Q psy4730 1409 EFDSASHEWRDGILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE 1483 (1513)
Q Consensus 1409 ~~~~~t~eW~DG~l~~~lR~~~~-----~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE 1483 (1513)
..+=..-+|+... ...+..+.+|+|. +|.-=.++-|++| |+| | ..|+++.||+-
T Consensus 85 ----------~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~-a~~m~~~AaNaLL---KtL-----E--EPp~~~~fiL~ 143 (325)
T PRK06871 85 ----------KDIGVDQVREINEKVSQHAQQGGNKVVYIQG-AERLTEAAANALL---KTL-----E--EPRPNTYFLLQ 143 (325)
T ss_pred ----------CCCCHHHHHHHHHHHhhccccCCceEEEEec-hhhhCHHHHHHHH---HHh-----c--CCCCCeEEEEE
Confidence 0122445565432 2235678888886 3333345666775 222 1 14788899999
Q ss_pred ecCCCCCCcchhhccEEEEeeCC
Q psy4730 1484 CENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1484 ~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
+++....-|...|||-.+.|.+-
T Consensus 144 t~~~~~llpTI~SRC~~~~~~~~ 166 (325)
T PRK06871 144 ADLSAALLPTIYSRCQTWLIHPP 166 (325)
T ss_pred ECChHhCchHHHhhceEEeCCCC
Confidence 99999998989999999999774
No 121
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.82 E-value=0.01 Score=71.41 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=32.6
Q ss_pred eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
..++.+++.+. .+.+.+.+|+..+.+.+|+.+++..+...++..
T Consensus 156 ~~~Il~~~~~~-~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~ 199 (337)
T PRK12402 156 CRFIIATRQPS-KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA 199 (337)
T ss_pred CeEEEEeCChh-hCchhhcCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 34555554332 456778899999999999999998888887654
No 122
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.0022 Score=79.89 Aligned_cols=124 Identities=21% Similarity=0.224 Sum_probs=68.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhc-ccccc---------cceeEEEecCCCCChhhccccccCCCCCCccC
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS-ATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~-~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
.|++++.||||+||||+.+++++.++....... ++..| ....+..+|+. . ..|
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa--------------~---~~g 98 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAA--------------S---NRG 98 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCc--------------c---cCC
Confidence 467999999999999999999999864211100 00000 01112222221 1 112
Q ss_pred HHHHHHHHh---hc-c-CCCCceEEEEcCC--CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcc
Q psy4730 1421 ILAKTFREM---AV-S-TTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPA 1493 (1513)
Q Consensus 1421 ~l~~~lR~~---~~-~-~~~~~~WivfDG~--~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPa 1493 (1513)
+ .-+|+. .. . .....+-+|+|.. +...-.+.|-..|++ .|+++.+++-+++.....|+
T Consensus 99 i--d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-------------p~~~vv~Ilattn~~kl~~~ 163 (472)
T PRK14962 99 I--DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-------------PPSHVVFVLATTNLEKVPPT 163 (472)
T ss_pred H--HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-------------CCCcEEEEEEeCChHhhhHH
Confidence 1 223332 11 1 1245678889962 112112222222322 24567778888888888999
Q ss_pred hhhccEEEEeeCC
Q psy4730 1494 TVSRVGMIYFELK 1506 (1513)
Q Consensus 1494 tvsRcg~v~~~~~ 1506 (1513)
..|||.++.|.+-
T Consensus 164 L~SR~~vv~f~~l 176 (472)
T PRK14962 164 IISRCQVIEFRNI 176 (472)
T ss_pred HhcCcEEEEECCc
Confidence 9999999988653
No 123
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.82 E-value=0.0074 Score=71.86 Aligned_cols=80 Identities=13% Similarity=0.254 Sum_probs=58.0
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCc-cccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCCh-
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNE- 965 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~- 965 (1513)
+|+||+|.... ...+.|.+.++.|.. +.+.......-..+.++|++||....+++.++.||.. +.+++|..
T Consensus 132 L~lDEInrl~~------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~ 205 (334)
T PRK13407 132 LYIDEVNLLED------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDV 205 (334)
T ss_pred EEecChHhCCH------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcH
Confidence 56799995543 367888888887754 3444444444458899999999877799999999986 78888877
Q ss_pred HHHHHHHHH
Q psy4730 966 ATLSKIFTS 974 (1513)
Q Consensus 966 ~~l~~i~~~ 974 (1513)
++-..|...
T Consensus 206 ~e~~~il~~ 214 (334)
T PRK13407 206 ETRVEVIRR 214 (334)
T ss_pred HHHHHHHHH
Confidence 454555554
No 124
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.0042 Score=73.93 Aligned_cols=136 Identities=13% Similarity=0.090 Sum_probs=82.0
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh--hcccccc---------cceeEEEecCCCCChhhccccccCCCCCC
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK--KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEW 1417 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~--~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW 1417 (1513)
+..|+.++.||+|+|||++.+.+|+++.-.... ..++..| .+.+++.+.|.+-. ...+..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~---------~~~g~~ 89 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE---------PENGRK 89 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc---------cccccc
Confidence 567899999999999999999999998522111 1122221 34556677763210 000111
Q ss_pred ccCHHHHHHHHhhc----cC-CCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCC
Q psy4730 1418 RDGILAKTFREMAV----ST-TPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFA 1490 (1513)
Q Consensus 1418 ~DG~l~~~lR~~~~----~~-~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~a 1490 (1513)
...+=..-+|+... .+ ...++.+|.| .-+|+.....|-..|++- |+++.+|+-+++...+
T Consensus 90 ~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep-------------~~~~~~Ilvth~~~~l 156 (325)
T PRK08699 90 LLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP-------------PPQVVFLLVSHAADKV 156 (325)
T ss_pred CCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC-------------cCCCEEEEEeCChHhC
Confidence 11122445565432 22 2345666544 223555555554444332 3457799999999999
Q ss_pred CcchhhccEEEEeeCC
Q psy4730 1491 SPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1491 sPatvsRcg~v~~~~~ 1506 (1513)
.|+..|||-.+.|.+-
T Consensus 157 l~ti~SRc~~~~~~~~ 172 (325)
T PRK08699 157 LPTIKSRCRKMVLPAP 172 (325)
T ss_pred hHHHHHHhhhhcCCCC
Confidence 9999999999998774
No 125
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.80 E-value=0.0076 Score=81.17 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=60.7
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------------------------C
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------M 944 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------~ 944 (1513)
+++||+....+ .+...|-|+++.|.+-|.. ...+...+..+|++.|-. +
T Consensus 671 lllDeieka~~------~v~~~Ll~~l~~g~l~d~~-g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (852)
T TIGR03346 671 VLFDEVEKAHP------DVFNVLLQVLDDGRLTDGQ-GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLR 743 (852)
T ss_pred EEEeccccCCH------HHHHHHHHHHhcCceecCC-CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHH
Confidence 45688875543 3678888999998877653 355666677888888863 2
Q ss_pred CCCChhhhccc-eEeecCCCChHHHHHHHHHHhh
Q psy4730 945 NTITGRLLRHM-NIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 945 ~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
....|.|++|+ .++...+++.+.+..|..-.+.
T Consensus 744 ~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 744 AHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred hhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHH
Confidence 23668899999 5688888999999999887664
No 126
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.80 E-value=0.0035 Score=73.75 Aligned_cols=120 Identities=22% Similarity=0.295 Sum_probs=71.3
Q ss_pred HHHHHHhc--ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCH
Q psy4730 1344 VYEMILVR--HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI 1421 (1513)
Q Consensus 1344 L~~~~~~~--~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~ 1421 (1513)
|.+++... +..|+.||||+||||+.++++...+ ..+..+|.-.-+.+|+=
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--------------~~f~~~sAv~~gvkdlr-------------- 90 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--------------AAFEALSAVTSGVKDLR-------------- 90 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--------------CceEEeccccccHHHHH--------------
Confidence 55566644 4899999999999999999998765 35566665544444432
Q ss_pred HHHHHHHhhc-cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCC-CCcchhhccE
Q psy4730 1422 LAKTFREMAV-STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEF-ASPATVSRVG 1499 (1513)
Q Consensus 1422 l~~~lR~~~~-~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~-asPatvsRcg 1499 (1513)
.++.++.+ .....+.-+.+|. |.++|..=-|-=.-.+-||..|-+.-. |+|-++ ..||..|||-
T Consensus 91 --~i~e~a~~~~~~gr~tiLflDE------IHRfnK~QQD~lLp~vE~G~iilIGAT------TENPsF~ln~ALlSR~~ 156 (436)
T COG2256 91 --EIIEEARKNRLLGRRTILFLDE------IHRFNKAQQDALLPHVENGTIILIGAT------TENPSFELNPALLSRAR 156 (436)
T ss_pred --HHHHHHHHHHhcCCceEEEEeh------hhhcChhhhhhhhhhhcCCeEEEEecc------CCCCCeeecHHHhhhhh
Confidence 22222211 1223456666675 566665433322222335555544321 223222 5799999999
Q ss_pred EEEeeC
Q psy4730 1500 MIYFEL 1505 (1513)
Q Consensus 1500 ~v~~~~ 1505 (1513)
+..+.|
T Consensus 157 vf~lk~ 162 (436)
T COG2256 157 VFELKP 162 (436)
T ss_pred eeeeec
Confidence 988765
No 127
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.79 E-value=0.024 Score=72.57 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=35.5
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.+++.++ .+++.+++|+..+.+..++.+.+......++..
T Consensus 149 ~v~fILaTtd~~-kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k 193 (709)
T PRK08691 149 HVKFILATTDPH-KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS 193 (709)
T ss_pred CcEEEEEeCCcc-ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Confidence 456676776544 466778899999999999999999988887764
No 128
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.78 E-value=0.0042 Score=79.52 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=76.2
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
...|..++.||+|+||||+.+.+++.++-..+. ..++..| ...++..+++. +.
T Consensus 36 rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaa-----------------s~ 98 (647)
T PRK07994 36 RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAA-----------------SR 98 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeeccc-----------------cc
Confidence 446889999999999999999999998742211 1111111 01112222221 12
Q ss_pred cCHHHHHHHHhh----cc-CCCCceEEEEcC--CCChHHHHhhhccc---CCCCceeecCCCeeecCCCCeEEEeecCCC
Q psy4730 1419 DGILAKTFREMA----VS-TTPDRKWIMFDG--PIDAVWIENMNTVL---DDNKKLCLINGEIIKMSNTMNLIFECENLE 1488 (1513)
Q Consensus 1419 DG~l~~~lR~~~----~~-~~~~~~WivfDG--~~d~~wiE~LNsvL---Ddn~~L~L~nGe~i~~~~~~~~iFE~~~l~ 1488 (1513)
.|+ .-+|+.. .. .....+-+|+|. -+.. +..|.+| ++ .|++++||+-|++..
T Consensus 99 ~~V--ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---~a~NALLKtLEE-------------Pp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 99 TKV--EDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---HSFNALLKTLEE-------------PPEHVKFLLATTDPQ 160 (647)
T ss_pred CCH--HHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---HHHHHHHHHHHc-------------CCCCeEEEEecCCcc
Confidence 232 2234332 22 134678899995 2233 4455554 32 477899999999999
Q ss_pred CCCcchhhccEEEEeeCC
Q psy4730 1489 FASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1489 ~asPatvsRcg~v~~~~~ 1506 (1513)
...|+-.|||-.++|.+-
T Consensus 161 kLl~TI~SRC~~~~f~~L 178 (647)
T PRK07994 161 KLPVTILSRCLQFHLKAL 178 (647)
T ss_pred ccchHHHhhheEeeCCCC
Confidence 998888999999988653
No 129
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.044 Score=69.66 Aligned_cols=45 Identities=7% Similarity=0.169 Sum_probs=35.1
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.+++.++ .+++.+++|+..+.+.+++.+.+......++..
T Consensus 148 ~v~FILaTtd~~-kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 148 HVKFLFATTDPQ-KLPITVISRCLQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred CcEEEEEECChH-hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH
Confidence 345666665443 467788899999999999999999888887654
No 130
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.037 Score=69.05 Aligned_cols=45 Identities=9% Similarity=0.186 Sum_probs=35.5
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.+++. ...+++.+.+|+..+.+.+++.+++......++..
T Consensus 146 ~v~fIlatte-~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~ 190 (491)
T PRK14964 146 HVKFILATTE-VKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK 190 (491)
T ss_pred CeEEEEEeCC-hHHHHHHHHHhheeeecccccHHHHHHHHHHHHHH
Confidence 3556656543 34588999999999999999999999888887653
No 131
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.77 E-value=0.0011 Score=72.56 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccc------cc-------cceeEEEecCCCCChh
Q psy4730 1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATM------KE-------FKTGYKIINPKSITMG 1404 (1513)
Q Consensus 1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~------~~-------~~~~~~~inp~~~t~~ 1404 (1513)
..+++++..+ -.|+++++||||||||++.+.+...+-.+......+. .. ....-++--+++.|..
T Consensus 11 aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~ 88 (206)
T PF01078_consen 11 AKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEA 88 (206)
T ss_dssp HHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HH
T ss_pred HHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHH
Confidence 4455555544 4799999999999999999999887766543221110 00 1122345566788899
Q ss_pred hccccccCCCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730 1405 QLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus 1405 eL~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
.|+|.- ....-|.++.+ .+--+.+| ...++..+|.|-..|++.+.----.|..+..|.++-++-
T Consensus 89 ~liGgg----~~~~PGeislA----------h~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~ 154 (206)
T PF01078_consen 89 ALIGGG----RPPRPGEISLA----------HRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVA 154 (206)
T ss_dssp HHHEEG----GGEEE-CGGGG----------TTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEE
T ss_pred HHhCCC----cCCCcCHHHHh----------cCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEE
Confidence 999973 25666776654 23678889 677999999999999887655555688898887765554
Q ss_pred e
Q psy4730 1483 E 1483 (1513)
Q Consensus 1483 E 1483 (1513)
.
T Consensus 155 a 155 (206)
T PF01078_consen 155 A 155 (206)
T ss_dssp E
T ss_pred E
Confidence 3
No 132
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.77 E-value=0.0029 Score=75.44 Aligned_cols=139 Identities=22% Similarity=0.295 Sum_probs=88.8
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccc------------cc--------------ceeEEEecCCCCChh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMK------------EF--------------KTGYKIINPKSITMG 1404 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~------------~~--------------~~~~~~inp~~~t~~ 1404 (1513)
..+|+|.|++|+||||++++++..+....+....+.. +. +..+.. -|-.+|-+
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-lP~~~t~d 103 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVD-LPLGATED 103 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCC-CCCCCccc
Confidence 4689999999999999999999888432211110000 00 001112 45566678
Q ss_pred hccccccCC----CC--CCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCC
Q psy4730 1405 QLYGEFDSA----SH--EWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSN 1476 (1513)
Q Consensus 1405 eL~G~~~~~----t~--eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~ 1476 (1513)
.|+|..|.. ++ .++.|++.++ ..-.+++| +.+++.-...|-.+|+++..-.-..|...+.|.
T Consensus 104 ~l~G~~d~~~~l~~g~~~~~~GlL~~A----------~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~ 173 (337)
T TIGR02030 104 RVCGTLDIERALTEGVKAFEPGLLARA----------NRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPA 173 (337)
T ss_pred ceecchhHhhHhhcCCEEeecCcceec----------cCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCC
Confidence 899988732 22 2455655322 23688889 567888888888888877544455688777776
Q ss_pred CCeEEEeecCCC--CCCcchhhccEEE
Q psy4730 1477 TMNLIFECENLE--FASPATVSRVGMI 1501 (1513)
Q Consensus 1477 ~~~~iFE~~~l~--~asPatvsRcg~v 1501 (1513)
.+ ++.-+.|+. ...|+...|.+|.
T Consensus 174 r~-iviat~np~eg~l~~~LldRf~l~ 199 (337)
T TIGR02030 174 RF-VLVGSGNPEEGELRPQLLDRFGLH 199 (337)
T ss_pred CE-EEEeccccccCCCCHHHHhhcceE
Confidence 54 444455543 4788999999974
No 133
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.0036 Score=75.23 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhh---hhc----ccccccceeEEEecCCCCC-hhhcccc
Q psy4730 1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAA---KKS----ATMKEFKTGYKIINPKSIT-MGQLYGE 1409 (1513)
Q Consensus 1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~---~~~----~~~~~~~~~~~~inp~~~t-~~eL~G~ 1409 (1513)
.......++.-...|++++.||+|+||||+.+.+++.+.--.. ... ++..+ ..++.+.-.+.. .-.+...
T Consensus 32 ~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c--~~c~~i~~~~hPdl~~l~~~ 109 (351)
T PRK09112 32 EAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPAS--PVWRQIAQGAHPNLLHITRP 109 (351)
T ss_pred HHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCC--HHHHHHHcCCCCCEEEeecc
Confidence 3344444444555789999999999999999999998753110 000 00000 000011000000 0001111
Q ss_pred ccCCCCCCccCHHHHHHHHhhc-----cCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730 1410 FDSASHEWRDGILAKTFREMAV-----STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus 1410 ~~~~t~eW~DG~l~~~lR~~~~-----~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
.++.++...-++-...+|+... ......+.+|+|. .++. ++.|.+| |.| |. .|++..+++
T Consensus 110 ~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---~aanaLL---k~L-----EE--pp~~~~fiL 176 (351)
T PRK09112 110 FDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---NAANAIL---KTL-----EE--PPARALFIL 176 (351)
T ss_pred cccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH---HHHHHHH---HHH-----hc--CCCCceEEE
Confidence 2222223333444555666532 2234668899995 2333 3344443 111 22 356677777
Q ss_pred eecCCCCCCcchhhccEEEEeeCC
Q psy4730 1483 ECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1483 E~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
-+++.....|...|||-.+.+.+-
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl 200 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPL 200 (351)
T ss_pred EECChhhccHHHHhhccEEEecCC
Confidence 788888888999999999998763
No 134
>PRK04195 replication factor C large subunit; Provisional
Probab=96.77 E-value=0.012 Score=74.54 Aligned_cols=43 Identities=7% Similarity=0.048 Sum_probs=31.9
Q ss_pred EEEEeecCCCCCCCh-hhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 935 IYITAMIPTMNTITG-RLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 935 ~~~~a~~~~~~~~~~-r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+|.++|.+.. +.+ .+.+++..+.+++|+..++..+...++..
T Consensus 132 ~iIli~n~~~~-~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 132 PIILTANDPYD-PSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CEEEeccCccc-cchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 35556666533 344 67788889999999999999998887753
No 135
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.76 E-value=0.001 Score=66.85 Aligned_cols=103 Identities=18% Similarity=0.313 Sum_probs=57.4
Q ss_pred EEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEec-CCCCChhhcccc--ccCCCCC--CccCHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIIN-PKSITMGQLYGE--FDSASHE--WRDGILAKTFRE 1428 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~in-p~~~t~~eL~G~--~~~~t~e--W~DG~l~~~lR~ 1428 (1513)
|+|.|+||.|||++++.||++++. .+.+|. ..-+..+++.|. +++.+++ |..|.+.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~--------------~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif----- 62 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL--------------SFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF----- 62 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----------------EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT------
T ss_pred EeeECCCccHHHHHHHHHHHHcCC--------------ceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-----
Confidence 799999999999999999999763 334442 233668999996 5544443 5566543
Q ss_pred hhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC
Q psy4730 1429 MAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN 1486 (1513)
Q Consensus 1429 ~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~ 1486 (1513)
..++++|. -..|..--+|=.++. .+..++ .|+..++|+.+.+ +.|+|
T Consensus 63 --------~~ill~DEiNrappktQsAlLeam~-Er~Vt~-~g~~~~lp~pf~V-iATqN 111 (131)
T PF07726_consen 63 --------TNILLADEINRAPPKTQSALLEAME-ERQVTI-DGQTYPLPDPFFV-IATQN 111 (131)
T ss_dssp --------SSEEEEETGGGS-HHHHHHHHHHHH-HSEEEE-TTEEEE--SS-EE-EEEE-
T ss_pred --------hceeeecccccCCHHHHHHHHHHHH-cCeEEe-CCEEEECCCcEEE-EEecC
Confidence 25888894 334433222222222 456666 6889999987554 55555
No 136
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.75 E-value=0.0051 Score=78.27 Aligned_cols=142 Identities=19% Similarity=0.208 Sum_probs=86.6
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC--C----hhhcccccc-CCCC----CC-
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI--T----MGQLYGEFD-SASH----EW- 1417 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~--t----~~eL~G~~~-~~t~----eW- 1417 (1513)
...+|+|+||||||||++.+.+.+...+...... ...-....+|+.+. + .+.++|+.+ |... -.
T Consensus 85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~----~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~ 160 (531)
T TIGR02902 85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF----KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGI 160 (531)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc----CCCCCEEEEccccccCCccccchhhcCCcccchhcccccccc
Confidence 3469999999999999999999765443211100 00123455555431 1 235666532 1100 01
Q ss_pred ------ccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceee-----cCCCe----------eec
Q psy4730 1418 ------RDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCL-----INGEI----------IKM 1474 (1513)
Q Consensus 1418 ------~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L-----~nGe~----------i~~ 1474 (1513)
..|.+. + ....-+++| +.+++...+.|-.+|+|.+...- ++++. -..
T Consensus 161 ~g~~~~~~G~l~----~------a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (531)
T TIGR02902 161 AGIPQPKPGAVT----R------AHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGL 230 (531)
T ss_pred CCcccccCchhh----c------cCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCc
Confidence 122221 1 233678899 67888888888888877654322 11111 135
Q ss_pred CCCCeEEEeec-CCCCCCcchhhccEEEEeeC
Q psy4730 1475 SNTMNLIFECE-NLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1475 ~~~~~~iFE~~-~l~~asPatvsRcg~v~~~~ 1505 (1513)
|.+++++.-|+ ++....||..|||-.|+|.+
T Consensus 231 ~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~p 262 (531)
T TIGR02902 231 PADFRLIGATTRNPEEIPPALRSRCVEIFFRP 262 (531)
T ss_pred ccceEEEEEecCCcccCChHHhhhhheeeCCC
Confidence 77889988875 67889999999999998876
No 137
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.75 E-value=0.0025 Score=80.40 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=73.3
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-ccccccc---------ceeEEEecCCCCChhhccccccCCCCCCcc
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKEF---------KTGYKIINPKSITMGQLYGEFDSASHEWRD 1419 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~~---------~~~~~~inp~~~t~~eL~G~~~~~t~eW~D 1419 (1513)
..|+.++.||+|+||||+.+.+|+++.-..... .++..|. ...++.+++. +.-
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaa-----------------s~i 99 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAA-----------------SNN 99 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccc-----------------ccc
Confidence 458999999999999999999999986322111 1111110 1122222221 112
Q ss_pred CHHHHHHHHh----hccC-CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730 1420 GILAKTFREM----AVST-TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus 1420 G~l~~~lR~~----~~~~-~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
|+ .-+|+. ...+ ...++-+|+|. .+.+.-..+|-..|++ .|+++.+||-+++.....|
T Consensus 100 gV--d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-------------Pp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 100 GV--DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-------------PPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CH--HHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-------------CCCcEEEEEECCChHhhhH
Confidence 21 223332 2111 23567899995 2233222333333333 3667888888888888888
Q ss_pred chhhccEEEEeeCC
Q psy4730 1493 ATVSRVGMIYFELK 1506 (1513)
Q Consensus 1493 atvsRcg~v~~~~~ 1506 (1513)
+..|||-.+.|.+-
T Consensus 165 TI~SRcq~ieF~~L 178 (605)
T PRK05896 165 TIISRCQRYNFKKL 178 (605)
T ss_pred HHHhhhhhcccCCC
Confidence 88999999988653
No 138
>PF05729 NACHT: NACHT domain
Probab=96.75 E-value=0.0034 Score=66.80 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=44.1
Q ss_pred CCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730 903 GAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 903 ~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
+.++..++|++++.... ..++.++.++.|....--.+.+.....+.+.+++.+++.+.+..++.
T Consensus 101 ~~~~~~~~l~~l~~~~~-----------~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 101 ERQRLLDLLSQLLPQAL-----------PPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHHHhhhcc-----------CCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHHhh
Confidence 45677888888887421 12456677777652222445555558889999999999999888754
No 139
>KOG0478|consensus
Probab=96.74 E-value=0.0075 Score=74.73 Aligned_cols=98 Identities=22% Similarity=0.342 Sum_probs=65.5
Q ss_pred CCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCC---CCCCC------CCchh
Q psy4730 1122 PGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPG---YAGRT------ELPDN 1192 (1513)
Q Consensus 1122 ~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~---y~gr~------~LP~n 1192 (1513)
.|.-+|+|||+.++...-|++-+-.+ +.--++-.-|---.+|-.|.|.+.-||- |--++ .||+.
T Consensus 526 D~GiCCIDEFDKM~dStrSvLhEvME-------QQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~Lppt 598 (804)
T KOG0478|consen 526 DNGICCIDEFDKMSDSTRSVLHEVME-------QQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPT 598 (804)
T ss_pred CCceEEchhhhhhhHHHHHHHHHHHH-------HhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChh
Confidence 56678999999999888776633221 1111122223446788999999999992 53332 58999
Q ss_pred HHhhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Q psy4730 1193 LKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLC 1237 (1513)
Q Consensus 1193 Lk~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~ 1237 (1513)
|-+.|--|..+.-+..- ...+.||.+|+.+|-.-
T Consensus 599 LLSRFDLIylllD~~DE-----------~~Dr~La~HivsLy~e~ 632 (804)
T KOG0478|consen 599 LLSRFDLIFLLLDKPDE-----------RSDRRLADHIVALYPET 632 (804)
T ss_pred hhhhhcEEEEEecCcch-----------hHHHHHHHHHHHhcccc
Confidence 99999998876332221 13467899999988664
No 140
>PRK05642 DNA replication initiation factor; Validated
Probab=96.72 E-value=0.0012 Score=75.16 Aligned_cols=41 Identities=5% Similarity=0.098 Sum_probs=32.7
Q ss_pred EEEEeecCC--CCCCChhhhccc---eEeecCCCChHHHHHHHHHH
Q psy4730 935 IYITAMIPT--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSV 975 (1513)
Q Consensus 935 ~~~~a~~~~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~ 975 (1513)
.+++|..+| .....|++.+|| .++.+.+|+.+++..|....
T Consensus 133 ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 133 LLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred EEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 456666555 455689999999 88999999999999988753
No 141
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.72 E-value=0.0017 Score=79.76 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=36.6
Q ss_pred ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
++.+|+|+|.+ ..++|.++| ||. .+.++.|+.++...|+..++..+
T Consensus 322 ~V~VI~ATNr~-d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 322 DVKVIMATNRI-ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred CeEEEEecCCh-HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 67788888865 467888886 664 59999999999999999876543
No 142
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.72 E-value=0.01 Score=75.14 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=32.7
Q ss_pred EEeecCC--CCCCChhhhccce---EeecCCCChHHHHHHHHHHhhh
Q psy4730 937 ITAMIPT--MNTITGRLLRHMN---IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 937 ~~a~~~~--~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
+++-.+| ...+.+||.+||. ++.+..|+.++...|.......
T Consensus 415 ITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 415 LSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred EecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 3444455 4579999999995 4889999999999999986543
No 143
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.0076 Score=76.77 Aligned_cols=134 Identities=22% Similarity=0.278 Sum_probs=77.2
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccccceeEEEecCC---CCChhhccccccCCCCCCccCHHHH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKEFKTGYKIINPK---SITMGQLYGEFDSASHEWRDGILAK 1424 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~~~~~~~~inp~---~~t~~eL~G~~~~~t~eW~DG~l~~ 1424 (1513)
+..|..++.||+|+||||+.++++++++-..+.. .++..|.. +..|++. +.+.-+ +|..+. -| ..
T Consensus 33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~--C~~i~~~~~~~~dvie----idaas~---~g--vd 101 (584)
T PRK14952 33 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES--CVALAPNGPGSIDVVE----LDAASH---GG--VD 101 (584)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH--HHHhhcccCCCceEEE----eccccc---cC--HH
Confidence 3467899999999999999999999987322111 11111111 1122211 111111 111110 02 12
Q ss_pred HHHHhh----cc-CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhc
Q psy4730 1425 TFREMA----VS-TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSR 1497 (1513)
Q Consensus 1425 ~lR~~~----~~-~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsR 1497 (1513)
-+|+.. .. .....+-+|+|. -+.. +..|.+|. +|-+ .|+++.|||-|++.....|+-.||
T Consensus 102 ~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---~A~NALLK-----~LEE-----pp~~~~fIL~tte~~kll~TI~SR 168 (584)
T PRK14952 102 DTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---AGFNALLK-----IVEE-----PPEHLIFIFATTEPEKVLPTIRSR 168 (584)
T ss_pred HHHHHHHHHHhhhhcCCceEEEEECCCcCCH---HHHHHHHH-----HHhc-----CCCCeEEEEEeCChHhhHHHHHHh
Confidence 234321 11 134678999995 2333 45666541 1111 567999999999998888888999
Q ss_pred cEEEEeeCC
Q psy4730 1498 VGMIYFELK 1506 (1513)
Q Consensus 1498 cg~v~~~~~ 1506 (1513)
|..+.|.+-
T Consensus 169 c~~~~F~~l 177 (584)
T PRK14952 169 THHYPFRLL 177 (584)
T ss_pred ceEEEeeCC
Confidence 999998753
No 144
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0047 Score=79.48 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=67.8
Q ss_pred HHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------------------------
Q psy4730 888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------ 943 (1513)
Q Consensus 888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------ 943 (1513)
.+++|++-.+-+| ++.++=|++|+|-+-|.+. ..+...|+.+|.+.|-.
T Consensus 596 ViLlDEIEKAHpd------V~nilLQVlDdGrLTD~~G-r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~ 668 (786)
T COG0542 596 VILLDEIEKAHPD------VFNLLLQVLDDGRLTDGQG-RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVM 668 (786)
T ss_pred EEEechhhhcCHH------HHHHHHHHhcCCeeecCCC-CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHH
Confidence 4567999888877 8999999999999988764 55667788888777642
Q ss_pred ---CCCCChhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 944 ---MNTITGRLLRHMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 944 ---~~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++..+|.|++|+. ++...+.+.+.+.+|....|..
T Consensus 669 ~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 669 EELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred HHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 3467888999998 8999999999999999887654
No 145
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.0074 Score=71.33 Aligned_cols=142 Identities=15% Similarity=0.106 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccc---------ccceeEEEecCCCCChhhccc
Q psy4730 1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMK---------EFKTGYKIINPKSITMGQLYG 1408 (1513)
Q Consensus 1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~---------~~~~~~~~inp~~~t~~eL~G 1408 (1513)
-.+..+.++.-+..|+.++.||.|+||+++.+.+|+++.-......+++. +.+.+++.|.|..-.
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~------ 85 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEG------ 85 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCC------
Confidence 34444555556677899999999999999999999998643221112221 234556677663210
Q ss_pred cccCCCCCCccCHHHHHHHHhhc-----cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEe
Q psy4730 1409 EFDSASHEWRDGILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE 1483 (1513)
Q Consensus 1409 ~~~~~t~eW~DG~l~~~lR~~~~-----~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE 1483 (1513)
. .+=..-+|+... ......+.+|+|+ +|..=.++-|++| |+ | | ..|+++.||+-
T Consensus 86 ------~----~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~-ae~m~~~AaNaLL---Kt--L---E--EPp~~t~fiL~ 144 (319)
T PRK06090 86 ------K----SITVEQIRQCNRLAQESSQLNGYRLFVIEP-ADAMNESASNALL---KT--L---E--EPAPNCLFLLV 144 (319)
T ss_pred ------C----cCCHHHHHHHHHHHhhCcccCCceEEEecc-hhhhCHHHHHHHH---HH--h---c--CCCCCeEEEEE
Confidence 0 011234454321 1234678888886 2333344556665 11 1 1 14778999999
Q ss_pred ecCCCCCCcchhhccEEEEeeCC
Q psy4730 1484 CENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1484 ~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
+++....-|.-+|||-.+.|.+-
T Consensus 145 t~~~~~lLpTI~SRCq~~~~~~~ 167 (319)
T PRK06090 145 THNQKRLLPTIVSRCQQWVVTPP 167 (319)
T ss_pred ECChhhChHHHHhcceeEeCCCC
Confidence 99999999999999999998764
No 146
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=96.68 E-value=0.014 Score=71.55 Aligned_cols=235 Identities=21% Similarity=0.232 Sum_probs=130.9
Q ss_pred CCccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhh
Q psy4730 704 RPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLD 783 (1513)
Q Consensus 704 ~~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~ 783 (1513)
.|.+++-......+.....+..-..+-+||+.|+|||||...++..=+..+...--...+|+.+-- ..++++-|-
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP-----e~LlESELF 317 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP-----ETLLESELF 317 (560)
T ss_pred chhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC-----HHHHHHHHh
Confidence 355666666677788888888999999999999999999988876644333222222344554433 234555543
Q ss_pred hhccCCCCCC--CCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHH
Q psy4730 784 RRRKGVYGPA--MGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELI 861 (1513)
Q Consensus 784 ~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (1513)
---+|.|-.. .||+ |+| +++.-+
T Consensus 318 Gye~GAFTGA~~~GK~---------------------------------------Glf-----------E~A~gG----- 342 (560)
T COG3829 318 GYEKGAFTGASKGGKP---------------------------------------GLF-----------ELANGG----- 342 (560)
T ss_pred CcCCccccccccCCCC---------------------------------------cce-----------eeccCC-----
Confidence 3333333111 1111 001 111111
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEee
Q psy4730 862 EQIKINLAKRNAQATDWYIEKIIQVYEMILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAM 940 (1513)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~ 940 (1513)
.+|+|+++ ||..= ---|||-|-|. .|...+..+ ..-.|+++|||+
T Consensus 343 --------------------------TLFLDEIgempl~L------QaKLLRVLQEk-ei~rvG~t~-~~~vDVRIIAAT 388 (560)
T COG3829 343 --------------------------TLFLDEIGEMPLPL------QAKLLRVLQEK-EIERVGGTK-PIPVDVRIIAAT 388 (560)
T ss_pred --------------------------eEEehhhccCCHHH------HHHHHHHHhhc-eEEecCCCC-ceeeEEEEEecc
Confidence 26789999 77611 13578888774 333333222 223599999999
Q ss_pred cCC------CCCCChhhhccceEeecCCCChH----HHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhcc
Q psy4730 941 IPT------MNTITGRLLRHMNIISIDSFNEA----TLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVF 1010 (1513)
Q Consensus 941 ~~~------~~~~~~r~~~~f~~~~~~~~~~~----~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1513)
|-+ ....-.-|.=|-+++.+.=|.-. ++-.+...++.. +...|...++.++....++.
T Consensus 389 N~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k-~s~~~~~~v~~ls~~a~~~L----------- 456 (560)
T COG3829 389 NRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDK-FSRRYGRNVKGLSPDALALL----------- 456 (560)
T ss_pred CcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHH-HHHHcCCCcccCCHHHHHHH-----------
Confidence 986 23344455666688766655532 555555554443 22234444444433333221
Q ss_pred CCCCCCCccccchhhHHHHHhhhcc-cCCcccCChhhHH
Q psy4730 1011 LPIPSKSHYVFNLRDFAKVIMGLTQ-LPASHCKAPDKMY 1048 (1513)
Q Consensus 1011 ~~~~~~~hy~fnlrd~~~~~~g~~~-~~~~~~~~~~~~~ 1048 (1513)
-+.+|==|.|.|.+++..... ...+...+.+.+.
T Consensus 457 ----~~y~WPGNVRELeNviER~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 457 ----LRYDWPGNVRELENVIERAVNLVESDGLIDADDLP 491 (560)
T ss_pred ----HhCCCCchHHHHHHHHHHHHhccCCcceeehhhcc
Confidence 123444499999999988773 4444444444333
No 147
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.68 E-value=0.0082 Score=78.47 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=36.1
Q ss_pred eEEEEeecCC-CCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730 934 IIYITAMIPT-MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 934 ~~~~~a~~~~-~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
+.+++++.++ -..+.+++++|..++.+++++.+++..|...++.
T Consensus 138 IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 138 ITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred EEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHH
Confidence 4566666543 4568899999999999999999999999998876
No 148
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.0077 Score=77.01 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=77.6
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
+..|+.++.||+|+||||+.+.++++++-.... ..++..| ...++..|++. + .
T Consensus 36 ~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaa--------------s---~ 98 (559)
T PRK05563 36 KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAA--------------S---N 98 (559)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeecc--------------c---c
Confidence 456899999999999999999999998743221 1111111 11222223321 1 1
Q ss_pred cCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcc
Q psy4730 1419 DGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPA 1493 (1513)
Q Consensus 1419 DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPa 1493 (1513)
.| ..-+|+.. .. .....+.+|+|. +|-.=-+..|.+|. +|- ..|+++.|||-+++.....|+
T Consensus 99 ~~--vd~ir~i~~~v~~~p~~~~~kViIIDE-~~~Lt~~a~naLLK-----tLE-----epp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 99 NG--VDEIRDIRDKVKYAPSEAKYKVYIIDE-VHMLSTGAFNALLK-----TLE-----EPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CC--HHHHHHHHHHHhhCcccCCeEEEEEEC-cccCCHHHHHHHHH-----Hhc-----CCCCCeEEEEEeCChhhCcHH
Confidence 12 23334332 11 234679999997 33222356666653 111 127788999999888888888
Q ss_pred hhhccEEEEeeC
Q psy4730 1494 TVSRVGMIYFEL 1505 (1513)
Q Consensus 1494 tvsRcg~v~~~~ 1505 (1513)
..|||..+-|.+
T Consensus 166 I~SRc~~~~f~~ 177 (559)
T PRK05563 166 ILSRCQRFDFKR 177 (559)
T ss_pred HHhHheEEecCC
Confidence 899999988754
No 149
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.67 E-value=0.0092 Score=73.32 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=28.3
Q ss_pred HHHHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730 721 FINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS 754 (1513)
Q Consensus 721 ~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~ 754 (1513)
++-..+..+.+|||.||||||||+++..+.....
T Consensus 31 lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 31 LCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred HHHHHHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 3444567899999999999999999998887653
No 150
>PLN03025 replication factor C subunit; Provisional
Probab=96.67 E-value=0.0081 Score=71.79 Aligned_cols=44 Identities=9% Similarity=0.153 Sum_probs=34.8
Q ss_pred eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
+.|+.++|++ ..+.+.+.+|...+.+.+|+.+++......++..
T Consensus 130 t~~il~~n~~-~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 130 TRFALACNTS-SKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred ceEEEEeCCc-cccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH
Confidence 3466777764 3566789999999999999999999888887653
No 151
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.0075 Score=71.95 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=89.8
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh--hcccccc---------cceeEEEecCCCCChhhccccccC----C
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK--KSATMKE---------FKTGYKIINPKSITMGQLYGEFDS----A 1413 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~--~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~----~ 1413 (1513)
+..|+.++.||+|+||+++.+.+|+++.--... ..++..| .+.+++.+.|..... +..|.-|. +
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~-~~~~~~~~~~~~~ 97 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAA-EAPGAADEAKEAD 97 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc-cccccccccccch
Confidence 567999999999999999999999998642211 1122222 345567777753211 11111110 0
Q ss_pred ---CCCC----ccCHHHHHHHHhhc----c-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEE
Q psy4730 1414 ---SHEW----RDGILAKTFREMAV----S-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus 1414 ---t~eW----~DG~l~~~lR~~~~----~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
.+.. ...+-..-+|+... . .....+-+|+|. +|..=.++-|++| |+|= ..|+++.||
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~-ae~m~~~AaNaLL---KtLE-------EPp~~t~fi 166 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYP-AEALNVAAANALL---KTLE-------EPPPGTVFL 166 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEec-hhhcCHHHHHHHH---HHhc-------CCCcCcEEE
Confidence 0011 11233455565432 2 234567788874 3333345566775 2221 368899999
Q ss_pred EeecCCCCCCcchhhccEEEEeeCC
Q psy4730 1482 FECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1482 FE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
+-+++....-|.-+|||-.|+|.+-
T Consensus 167 L~t~~~~~LLpTI~SRcq~i~~~~~ 191 (342)
T PRK06964 167 LVSARIDRLLPTILSRCRQFPMTVP 191 (342)
T ss_pred EEECChhhCcHHHHhcCEEEEecCC
Confidence 9999999999999999999999764
No 152
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.65 E-value=0.0065 Score=68.85 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.2
Q ss_pred cCCccceeccCCCccchHhHHHHHhcc
Q psy4730 727 QNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
..+.|++|+||+|||||+++..+....
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999887654
No 153
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.63 E-value=0.0032 Score=78.39 Aligned_cols=135 Identities=17% Similarity=0.199 Sum_probs=73.4
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh--cccccccceeEEEec-CCCCChhhccccccCCCCCCccCHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK--SATMKEFKTGYKIIN-PKSITMGQLYGEFDSASHEWRDGILAKTF 1426 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~--~~~~~~~~~~~~~in-p~~~t~~eL~G~~~~~t~eW~DG~l~~~l 1426 (1513)
..|+.++.||+|+||||+.+.+++++.-..... .++..|. .+..+. ....+.-++-|. ..-|+ ..+
T Consensus 38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~--~C~~i~~~~~~d~~~i~g~-------~~~gi--d~i 106 (451)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA--SCKEISSGTSLDVLEIDGA-------SHRGI--EDI 106 (451)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH--HHHHHhcCCCCceEEeecc-------ccCCH--HHH
Confidence 357899999999999999999999986421110 0111000 000000 000011111110 11121 234
Q ss_pred HHhhc-----cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEE
Q psy4730 1427 REMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMI 1501 (1513)
Q Consensus 1427 R~~~~-----~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v 1501 (1513)
|+... .....++.||+|.. |..--+..|.+|.- +-+ .|+++.+||-+++.....|+-.|||.+|
T Consensus 107 r~i~~~l~~~~~~~~~kvvIIdea-d~lt~~~~n~LLk~-----lEe-----p~~~~~~Il~t~~~~kl~~tI~sRc~~v 175 (451)
T PRK06305 107 RQINETVLFTPSKSRYKIYIIDEV-HMLTKEAFNSLLKT-----LEE-----PPQHVKFFLATTEIHKIPGTILSRCQKM 175 (451)
T ss_pred HHHHHHHHhhhhcCCCEEEEEecH-HhhCHHHHHHHHHH-----hhc-----CCCCceEEEEeCChHhcchHHHHhceEE
Confidence 43321 12356799999972 22222344444311 111 3567888998888888989999999999
Q ss_pred EeeCC
Q psy4730 1502 YFELK 1506 (1513)
Q Consensus 1502 ~~~~~ 1506 (1513)
.|.+-
T Consensus 176 ~f~~l 180 (451)
T PRK06305 176 HLKRI 180 (451)
T ss_pred eCCCC
Confidence 98653
No 154
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.63 E-value=0.0075 Score=80.71 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=63.3
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC-------------------------
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------- 943 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------- 943 (1513)
+++||+-... +...++|-|++++|.+-|... ..+...+..+|.+.|-+
T Consensus 672 vllDEieka~------~~v~~~Llq~ld~g~l~d~~G-r~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (852)
T TIGR03345 672 VLLDEVEKAH------PDVLELFYQVFDKGVMEDGEG-REIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALR 744 (852)
T ss_pred EEEechhhcC------HHHHHHHHHHhhcceeecCCC-cEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHH
Confidence 5569985333 457899999999999887654 46677788888876632
Q ss_pred ---CCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 944 ---MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 944 ---~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
+....|.|++|+.++.+.+.+.+++.+|....+..
T Consensus 745 ~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 745 PELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred HHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 12367888999999999999999999999887654
No 155
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.61 E-value=0.0035 Score=72.71 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=24.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
..++|.|||||||||+.+.+++.+..+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999988654
No 156
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.60 E-value=0.007 Score=77.13 Aligned_cols=134 Identities=16% Similarity=0.204 Sum_probs=75.7
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccccceeEEEecCC-CCChhhccccccCCCCCCccCHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKEFKTGYKIINPK-SITMGQLYGEFDSASHEWRDGILAKTFR 1427 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~~~~~~~~inp~-~~t~~eL~G~~~~~t~eW~DG~l~~~lR 1427 (1513)
..|+.++.||+|+||||+.+.|++++.--.+.. .+++.|.. +..|+.. +.+..++-|. ...| ..-+|
T Consensus 37 i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~--C~~i~~~~~~dv~~idga-------s~~~--vddIr 105 (563)
T PRK06647 37 IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS--CKSIDNDNSLDVIEIDGA-------SNTS--VQDVR 105 (563)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH--HHHHHcCCCCCeEEecCc-------ccCC--HHHHH
Confidence 457899999999999999999999987321110 01111100 0001100 1111111110 1112 23344
Q ss_pred Hhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEE
Q psy4730 1428 EMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIY 1502 (1513)
Q Consensus 1428 ~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~ 1502 (1513)
+.. .. .....+-+|+|. ++-.--+..|.+|.. -| ..|+++.+||-++++....|+-.|||..+.
T Consensus 106 ~l~e~~~~~p~~~~~KVvIIDE-a~~Ls~~a~naLLK~--------LE--epp~~~vfI~~tte~~kL~~tI~SRc~~~~ 174 (563)
T PRK06647 106 QIKEEIMFPPASSRYRVYIIDE-VHMLSNSAFNALLKT--------IE--EPPPYIVFIFATTEVHKLPATIKSRCQHFN 174 (563)
T ss_pred HHHHHHHhchhcCCCEEEEEEC-hhhcCHHHHHHHHHh--------hc--cCCCCEEEEEecCChHHhHHHHHHhceEEE
Confidence 432 11 134668888886 222223455555321 22 257889999999999889889999999998
Q ss_pred eeC
Q psy4730 1503 FEL 1505 (1513)
Q Consensus 1503 ~~~ 1505 (1513)
|.+
T Consensus 175 f~~ 177 (563)
T PRK06647 175 FRL 177 (563)
T ss_pred ecC
Confidence 865
No 157
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0074 Score=75.64 Aligned_cols=86 Identities=21% Similarity=0.334 Sum_probs=57.3
Q ss_pred HhhccCCCCCccCCCCCh--HHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHH
Q psy4730 890 ILDDLNMPQKETYGAQPA--VELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEAT 967 (1513)
Q Consensus 890 ~~dd~n~p~~~~~~~q~~--le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~ 967 (1513)
++|++-.-.++.+|.+.. ||.|===. ...|-|-=--....+.++.|+|+.|. -++||+-|+-|.-++.+...+.+.
T Consensus 422 LLDEIDKm~ss~rGDPaSALLEVLDPEQ-N~~F~DhYLev~yDLS~VmFiaTANs-l~tIP~PLlDRMEiI~lsgYt~~E 499 (782)
T COG0466 422 LLDEIDKMGSSFRGDPASALLEVLDPEQ-NNTFSDHYLEVPYDLSKVMFIATANS-LDTIPAPLLDRMEVIRLSGYTEDE 499 (782)
T ss_pred EeechhhccCCCCCChHHHHHhhcCHhh-cCchhhccccCccchhheEEEeecCc-cccCChHHhcceeeeeecCCChHH
Confidence 468888777777775422 44331111 12232211112345678899887775 567999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy4730 968 LSKIFTSVLD 977 (1513)
Q Consensus 968 l~~i~~~~l~ 977 (1513)
-..|-..+|-
T Consensus 500 Kl~IAk~~Li 509 (782)
T COG0466 500 KLEIAKRHLI 509 (782)
T ss_pred HHHHHHHhcc
Confidence 8888887653
No 158
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.58 E-value=0.024 Score=67.79 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=34.7
Q ss_pred ccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhc
Q psy4730 708 LIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLN 752 (1513)
Q Consensus 708 ~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~ 752 (1513)
++-......+....+..+...+.|||++|++||||++++...-..
T Consensus 8 liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 333344555666677778899999999999999999999877543
No 159
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.56 E-value=0.005 Score=75.54 Aligned_cols=138 Identities=12% Similarity=0.186 Sum_probs=78.6
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHH
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILA 1423 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~ 1423 (1513)
+..++.++..|+|.||||+|||++.+.|+.+...-. .+..++....|..++||..+-.. .=.+|-+.
T Consensus 32 ll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~~~------------~F~~~~~~fttp~DLfG~l~i~~-~~~~g~f~ 98 (498)
T PRK13531 32 CLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNAR------------AFEYLMTRFSTPEEVFGPLSIQA-LKDEGRYQ 98 (498)
T ss_pred HHHHHccCCCEEEECCCChhHHHHHHHHHHHhcccC------------cceeeeeeecCcHHhcCcHHHhh-hhhcCchh
Confidence 444567889999999999999999999998875311 11112222124569999651100 00122222
Q ss_pred HHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC-CCC---CCcchhhc
Q psy4730 1424 KTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-LEF---ASPATVSR 1497 (1513)
Q Consensus 1424 ~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~-l~~---asPatvsR 1497 (1513)
+. +.+ .-....-+++| +...+.--..|=.++.+ +..+. .|+..++|. ++++-++| |-. .=+|..-|
T Consensus 99 r~-~~G---~L~~A~lLfLDEI~rasp~~QsaLLeam~E-r~~t~-g~~~~~lp~--rfiv~ATN~LPE~g~~leAL~DR 170 (498)
T PRK13531 99 RL-TSG---YLPEAEIVFLDEIWKAGPAILNTLLTAINE-RRFRN-GAHEEKIPM--RLLVTASNELPEADSSLEALYDR 170 (498)
T ss_pred hh-cCC---ccccccEEeecccccCCHHHHHHHHHHHHh-CeEec-CCeEEeCCC--cEEEEECCCCcccCCchHHhHhh
Confidence 11 111 01112478889 67788777777777755 44554 677788774 55554443 211 00277778
Q ss_pred cEEEEe
Q psy4730 1498 VGMIYF 1503 (1513)
Q Consensus 1498 cg~v~~ 1503 (1513)
. ++.+
T Consensus 171 F-liri 175 (498)
T PRK13531 171 M-LIRL 175 (498)
T ss_pred E-EEEE
Confidence 7 5443
No 160
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.56 E-value=0.0085 Score=80.44 Aligned_cols=84 Identities=17% Similarity=0.284 Sum_probs=62.2
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------------------------C
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------M 944 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------~ 944 (1513)
+++||+-...+ .....|-++++.|.+-|.. ...+...+..+|.++|-. +
T Consensus 674 LllDEieka~~------~v~~~Ll~ile~g~l~d~~-gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (857)
T PRK10865 674 ILLDEVEKAHP------DVFNILLQVLDDGRLTDGQ-GRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVS 746 (857)
T ss_pred EEEeehhhCCH------HHHHHHHHHHhhCceecCC-ceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHc
Confidence 45688864443 3788999999998876643 345566677788888752 2
Q ss_pred CCCChhhhccc-eEeecCCCChHHHHHHHHHHhhhh
Q psy4730 945 NTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 945 ~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
+...|.|++|+ .++...+++.+++..|+...+...
T Consensus 747 ~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l 782 (857)
T PRK10865 747 HNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRL 782 (857)
T ss_pred ccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence 45778999999 778889999999999998877553
No 161
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.55 E-value=0.014 Score=64.19 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=74.5
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
+..|.+++.||+|+|||++.+.+++.+..-... ..++..+ ....+..+.|.. ....
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~--------------~~~~ 77 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG--------------QSIK 77 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc--------------CcCC
Confidence 345789999999999999999999887532100 0000000 111223333321 1110
Q ss_pred cCHHHHHHHHhhccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhc
Q psy4730 1419 DGILAKTFREMAVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSR 1497 (1513)
Q Consensus 1419 DG~l~~~lR~~~~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsR 1497 (1513)
-..+-.+++.....+ ...++-||+|. +|..=-+..|.+|+ . | |. .|+++.++|-+.+.....|+..||
T Consensus 78 ~~~i~~i~~~~~~~~~~~~~kviiide-~~~l~~~~~~~Ll~---~--l---e~--~~~~~~~il~~~~~~~l~~~i~sr 146 (188)
T TIGR00678 78 VDQVRELVEFLSRTPQESGRRVVIIED-AERMNEAAANALLK---T--L---EE--PPPNTLFILITPSPEKLLPTIRSR 146 (188)
T ss_pred HHHHHHHHHHHccCcccCCeEEEEEec-hhhhCHHHHHHHHH---H--h---cC--CCCCeEEEEEECChHhChHHHHhh
Confidence 011222233332222 34678899996 22211233344431 1 1 22 356888999888888999999999
Q ss_pred cEEEEeeCC
Q psy4730 1498 VGMIYFELK 1506 (1513)
Q Consensus 1498 cg~v~~~~~ 1506 (1513)
|.+|.+.+-
T Consensus 147 ~~~~~~~~~ 155 (188)
T TIGR00678 147 CQVLPFPPL 155 (188)
T ss_pred cEEeeCCCC
Confidence 999988763
No 162
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.0096 Score=71.20 Aligned_cols=131 Identities=23% Similarity=0.225 Sum_probs=83.4
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccc----------cccceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATM----------KEFKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~----------~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
+..|++++.||+|+||||+...||+.+.-......... .+...+++.+||.......
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~------------- 88 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID------------- 88 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-------------
Confidence 35668999999999999999999999873221111000 0012356667766443211
Q ss_pred cCHHHHHHHHhhccC-----CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcc
Q psy4730 1419 DGILAKTFREMAVST-----TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPA 1493 (1513)
Q Consensus 1419 DG~l~~~lR~~~~~~-----~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPa 1493 (1513)
+....+|+..... ....+-|++|. +|..=.++-|.+| |++ ..-|.+..+++-+.+....-|.
T Consensus 89 --i~~~~vr~~~~~~~~~~~~~~~kviiide-ad~mt~~A~nall---k~l-------Eep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 89 --IIVEQVRELAEFLSESPLEGGYKVVIIDE-ADKLTEDAANALL---KTL-------EEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred --chHHHHHHHHHHhccCCCCCCceEEEeCc-HHHHhHHHHHHHH---HHh-------ccCCCCeEEEEEcCChhhccch
Confidence 4456667665422 24568888886 3333334444442 111 1235678888888889999999
Q ss_pred hhhccEEEEeeC
Q psy4730 1494 TVSRVGMIYFEL 1505 (1513)
Q Consensus 1494 tvsRcg~v~~~~ 1505 (1513)
-.|||.++.|.+
T Consensus 156 I~SRc~~i~f~~ 167 (325)
T COG0470 156 IRSRCQRIRFKP 167 (325)
T ss_pred hhhcceeeecCC
Confidence 999999999975
No 163
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.53 E-value=0.0051 Score=81.79 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=37.2
Q ss_pred cceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
.++.++||+|.|. .|+|.++| ||. .++++.|+.++...|+...+.
T Consensus 589 ~~v~vI~aTn~~~-~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~ 636 (733)
T TIGR01243 589 SNVVVIAATNRPD-ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR 636 (733)
T ss_pred CCEEEEEeCCChh-hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc
Confidence 3688899998765 58999997 885 599999999999999986544
No 164
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.52 E-value=0.0063 Score=76.40 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=75.1
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
...|..++.||+|+||||+.+.|++++.--.+.. .++..| ....+..+|. .+.
T Consensus 34 rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda--------------as~--- 96 (535)
T PRK08451 34 RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA--------------ASN--- 96 (535)
T ss_pred CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc--------------ccc---
Confidence 3457789999999999999999999985321110 011100 0111111111 110
Q ss_pred cCHHHHHHHHhhc----cC-CCCceEEEEcCCCChHHHHhhhcc---cCCCCceeecCCCeeecCCCCeEEEeecCCCCC
Q psy4730 1419 DGILAKTFREMAV----ST-TPDRKWIMFDGPIDAVWIENMNTV---LDDNKKLCLINGEIIKMSNTMNLIFECENLEFA 1490 (1513)
Q Consensus 1419 DG~l~~~lR~~~~----~~-~~~~~WivfDG~~d~~wiE~LNsv---LDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~a 1490 (1513)
-| ...+|+... .+ ....+-+|+|.. |..--++.|.+ |++ .|+++.|||-+.+....
T Consensus 97 ~g--Id~IRelie~~~~~P~~~~~KVvIIDEa-d~Lt~~A~NALLK~LEE-------------pp~~t~FIL~ttd~~kL 160 (535)
T PRK08451 97 RG--IDDIRELIEQTKYKPSMARFKIFIIDEV-HMLTKEAFNALLKTLEE-------------PPSYVKFILATTDPLKL 160 (535)
T ss_pred cC--HHHHHHHHHHHhhCcccCCeEEEEEECc-ccCCHHHHHHHHHHHhh-------------cCCceEEEEEECChhhC
Confidence 02 234555432 11 245688999962 22223444444 332 47789999999999888
Q ss_pred CcchhhccEEEEeeCC
Q psy4730 1491 SPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1491 sPatvsRcg~v~~~~~ 1506 (1513)
.|+..|||..+.|.+-
T Consensus 161 ~~tI~SRc~~~~F~~L 176 (535)
T PRK08451 161 PATILSRTQHFRFKQI 176 (535)
T ss_pred chHHHhhceeEEcCCC
Confidence 8999999999998763
No 165
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.52 E-value=0.0054 Score=71.85 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=67.7
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
.++++.||||||||++.+.+++.+..++.... -.+..+++ .++.|.+-..+. .-...++.++
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~-------~~~v~v~~-----~~l~~~~~g~~~----~~~~~~~~~a-- 120 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRK-------GHLVSVTR-----DDLVGQYIGHTA----PKTKEILKRA-- 120 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCccc-------ceEEEecH-----HHHhHhhcccch----HHHHHHHHHc--
Confidence 47999999999999999999998876432111 12334443 334433221111 1122333332
Q ss_pred cCCCCceEEEEcC-----------CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec-----CCCCCCcchh
Q psy4730 1432 STTPDRKWIMFDG-----------PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE-----NLEFASPATV 1495 (1513)
Q Consensus 1432 ~~~~~~~WivfDG-----------~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~-----~l~~asPatv 1495 (1513)
...-+++|. +.....++.|..+||+.+ .++++|+-+. .+-...|+.-
T Consensus 121 ----~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-------------~~~~vI~a~~~~~~~~~~~~np~L~ 183 (284)
T TIGR02880 121 ----MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-------------DDLVVILAGYKDRMDSFFESNPGFS 183 (284)
T ss_pred ----cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhhCHHHH
Confidence 114566773 123445677778887653 4556666542 2233579999
Q ss_pred hccEE-EEeeC
Q psy4730 1496 SRVGM-IYFEL 1505 (1513)
Q Consensus 1496 sRcg~-v~~~~ 1505 (1513)
|||.. |.|++
T Consensus 184 sR~~~~i~fp~ 194 (284)
T TIGR02880 184 SRVAHHVDFPD 194 (284)
T ss_pred hhCCcEEEeCC
Confidence 99964 56654
No 166
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.49 E-value=0.019 Score=70.20 Aligned_cols=124 Identities=15% Similarity=0.192 Sum_probs=70.6
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccC--HHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG--ILAKTFR 1427 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG--~l~~~lR 1427 (1513)
..|++++.||+|+|||++.+.+++.+..-... . +.......+..++. ....| .+..++.
T Consensus 38 ~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~-~-~~~~~~~~~~~l~~-----------------~~~~~~~~i~~l~~ 98 (367)
T PRK14970 38 LAQALLFCGPRGVGKTTCARILARKINQPGYD-D-PNEDFSFNIFELDA-----------------ASNNSVDDIRNLID 98 (367)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-C-CCCCCCcceEEecc-----------------ccCCCHHHHHHHHH
Confidence 35789999999999999999998877531100 0 00000111111111 01111 2223333
Q ss_pred Hhhcc-CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEee
Q psy4730 1428 EMAVS-TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFE 1504 (1513)
Q Consensus 1428 ~~~~~-~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~ 1504 (1513)
+.... ....++-|++|. .+.+.-.+.+...|++ .|+++.+||.+++.....|+.-|||.+|.+.
T Consensus 99 ~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~-------------~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~ 165 (367)
T PRK14970 99 QVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE-------------PPAHAIFILATTEKHKIIPTILSRCQIFDFK 165 (367)
T ss_pred HHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC-------------CCCceEEEEEeCCcccCCHHHHhcceeEecC
Confidence 33222 234567899995 2333222333333332 2556788888888888889999999999887
Q ss_pred C
Q psy4730 1505 L 1505 (1513)
Q Consensus 1505 ~ 1505 (1513)
+
T Consensus 166 ~ 166 (367)
T PRK14970 166 R 166 (367)
T ss_pred C
Confidence 6
No 167
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.49 E-value=0.011 Score=75.80 Aligned_cols=128 Identities=17% Similarity=0.161 Sum_probs=73.8
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh---------cccccc---------cceeEEEecCCCCChhhccccc
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK---------SATMKE---------FKTGYKIINPKSITMGQLYGEF 1410 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~---------~~~~~~---------~~~~~~~inp~~~t~~eL~G~~ 1410 (1513)
+..|+.++.||+|+||||+.+.+|+++.-..... .++..| ...++..+++.+.
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~--------- 106 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASN--------- 106 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEeccccc---------
Confidence 4468999999999999999999999986422110 111111 1112222222110
Q ss_pred cCCCCCCccCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730 1411 DSASHEWRDGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus 1411 ~~~t~eW~DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
.| ..-+|+.. .. ....++-+|+|. +|..-.+..|.+|.- |-+ .|+++.+||-++
T Consensus 107 --------~~--vd~Ir~l~e~~~~~P~~~~~KVvIIdE-ad~Lt~~a~naLLK~-----LEe-----Pp~~tv~IL~t~ 165 (620)
T PRK14954 107 --------NS--VDDIRQLRENVRYGPQKGRYRVYIIDE-VHMLSTAAFNAFLKT-----LEE-----PPPHAIFIFATT 165 (620)
T ss_pred --------CC--HHHHHHHHHHHHhhhhcCCCEEEEEeC-hhhcCHHHHHHHHHH-----HhC-----CCCCeEEEEEeC
Confidence 11 12333332 11 134678889986 222222344444421 000 456778888888
Q ss_pred CCCCCCcchhhccEEEEeeCC
Q psy4730 1486 NLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1486 ~l~~asPatvsRcg~v~~~~~ 1506 (1513)
+....-|+..|||-+|.|.+-
T Consensus 166 ~~~kLl~TI~SRc~~vef~~l 186 (620)
T PRK14954 166 ELHKIPATIASRCQRFNFKRI 186 (620)
T ss_pred ChhhhhHHHHhhceEEecCCC
Confidence 888888888999999998653
No 168
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.45 E-value=0.015 Score=75.33 Aligned_cols=144 Identities=20% Similarity=0.263 Sum_probs=81.4
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC------hhhccccccCCCCCCccCHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT------MGQLYGEFDSASHEWRDGILAK 1424 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t------~~eL~G~~~~~t~eW~DG~l~~ 1424 (1513)
...++|+|||||||||+.++++.......+.... ....+..+|...+. ...++|... ++....
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~----~~~~fv~i~~~~l~~d~~~i~~~llg~~~-------~~~~~~ 243 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFA----EDAPFVEVDGTTLRWDPREVTNPLLGSVH-------DPIYQG 243 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCccc----CCCCeEEEechhccCCHHHHhHHhcCCcc-------HHHHHH
Confidence 4579999999999999999998765432211000 01234555544432 124566432 222211
Q ss_pred H---HHHhhcc-------CCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecC-----CCee--------e--cCCC
Q psy4730 1425 T---FREMAVS-------TTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLIN-----GEII--------K--MSNT 1477 (1513)
Q Consensus 1425 ~---lR~~~~~-------~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~n-----Ge~i--------~--~~~~ 1477 (1513)
+ ++..... ......-+++| +.+|+.-.+.|-.+|++.+.+...+ ++.+ . .+.+
T Consensus 244 a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~ 323 (615)
T TIGR02903 244 ARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPAD 323 (615)
T ss_pred HHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccce
Confidence 1 1111000 01122468899 6678888999999998765443321 1111 1 1223
Q ss_pred CeEEEee-cCCCCCCcchhhccEEEEeeC
Q psy4730 1478 MNLIFEC-ENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1478 ~~~iFE~-~~l~~asPatvsRcg~v~~~~ 1505 (1513)
+.++.-| .+.....|+..|||..+++.|
T Consensus 324 ~VLI~aTt~~~~~l~~aLrSR~~~i~~~p 352 (615)
T TIGR02903 324 FVLIGATTRDPEEINPALRSRCAEVFFEP 352 (615)
T ss_pred EEEEEeccccccccCHHHHhceeEEEeCC
Confidence 4444444 457778899999999999887
No 169
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.44 E-value=0.007 Score=76.85 Aligned_cols=138 Identities=18% Similarity=0.162 Sum_probs=76.1
Q ss_pred HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHH
Q psy4730 1348 ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTF 1426 (1513)
Q Consensus 1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~l 1426 (1513)
-...|+.++.||+|+||||+.+.++++++--... ..++..|.. +..+.... .-+++. +|..+ +.|+ ..+
T Consensus 35 ~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~--C~~i~~~~--~~d~~e-i~~~~---~~~v--d~i 104 (527)
T PRK14969 35 QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA--CLEIDSGR--FVDLIE-VDAAS---NTQV--DAM 104 (527)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH--HHHHhcCC--CCceeE-eeccc---cCCH--HHH
Confidence 3446899999999999999999999998631111 011111100 00000000 001111 12111 1221 233
Q ss_pred HHh----hccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEE
Q psy4730 1427 REM----AVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMI 1501 (1513)
Q Consensus 1427 R~~----~~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v 1501 (1513)
|+. ...+ ...++-+|+|. +|-.--+..|.+|. . |-+ .|+++.|||-|+|....-|...|||-.+
T Consensus 105 r~l~~~~~~~p~~~~~kVvIIDE-ad~ls~~a~naLLK---~--LEe-----pp~~~~fIL~t~d~~kil~tI~SRc~~~ 173 (527)
T PRK14969 105 RELLDNAQYAPTRGRFKVYIIDE-VHMLSKSAFNAMLK---T--LEE-----PPEHVKFILATTDPQKIPVTVLSRCLQF 173 (527)
T ss_pred HHHHHHHhhCcccCCceEEEEcC-cccCCHHHHHHHHH---H--HhC-----CCCCEEEEEEeCChhhCchhHHHHHHHH
Confidence 432 2222 24567889996 33333355666551 1 101 3678999999999988888789999998
Q ss_pred EeeCC
Q psy4730 1502 YFELK 1506 (1513)
Q Consensus 1502 ~~~~~ 1506 (1513)
.|.+-
T Consensus 174 ~f~~l 178 (527)
T PRK14969 174 NLKQM 178 (527)
T ss_pred hcCCC
Confidence 87653
No 170
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.0069 Score=78.07 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=74.6
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh--cccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK--SATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFR 1427 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~--~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR 1427 (1513)
..|+.++.||+|+||||+.+.+|+++.-..... .++..|..+ ...+| +.-+ ++..+ ..|+ .-+|
T Consensus 39 l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~--~~~~~---Dvie----idaas---n~~v--d~IR 104 (725)
T PRK07133 39 ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN--VNNSL---DIIE----MDAAS---NNGV--DEIR 104 (725)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh--hcCCC---cEEE----Eeccc---cCCH--HHHH
Confidence 468999999999999999999999986322110 011111110 00011 1000 11111 1122 2233
Q ss_pred Hh----hccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEE
Q psy4730 1428 EM----AVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIY 1502 (1513)
Q Consensus 1428 ~~----~~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~ 1502 (1513)
+. ...+ ...++-+|+|. +|-.=.++.|.+|.. |- ..|+++.+||-+++.....|+..|||..+.
T Consensus 105 eLie~~~~~P~~g~~KV~IIDE-a~~LT~~A~NALLKt-----LE-----EPP~~tifILaTte~~KLl~TI~SRcq~ie 173 (725)
T PRK07133 105 ELIENVKNLPTQSKYKIYIIDE-VHMLSKSAFNALLKT-----LE-----EPPKHVIFILATTEVHKIPLTILSRVQRFN 173 (725)
T ss_pred HHHHHHHhchhcCCCEEEEEEC-hhhCCHHHHHHHHHH-----hh-----cCCCceEEEEEcCChhhhhHHHHhhceeEE
Confidence 32 2222 35678899996 222222455555421 10 127788999999999888888899999998
Q ss_pred eeCC
Q psy4730 1503 FELK 1506 (1513)
Q Consensus 1503 ~~~~ 1506 (1513)
|.+-
T Consensus 174 F~~L 177 (725)
T PRK07133 174 FRRI 177 (725)
T ss_pred ccCC
Confidence 8663
No 171
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.012 Score=71.05 Aligned_cols=145 Identities=15% Similarity=0.142 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcc-----------ccc---------ccceeEEEecCCC
Q psy4730 1341 IIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA-----------TMK---------EFKTGYKIINPKS 1400 (1513)
Q Consensus 1341 ~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~-----------~~~---------~~~~~~~~inp~~ 1400 (1513)
+.+.+..-+..|+.++.||+|+||+|+...+++++.--...... +.. ..+.+++.|.|..
T Consensus 31 L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~ 110 (365)
T PRK07471 31 LLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSW 110 (365)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccc
Confidence 33444444557899999999999999999999998521110000 000 1223345555432
Q ss_pred CChhhccccccCCCCCCccCHHHHHHHHhhc----c-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecC
Q psy4730 1401 ITMGQLYGEFDSASHEWRDGILAKTFREMAV----S-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMS 1475 (1513)
Q Consensus 1401 ~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~----~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~ 1475 (1513)
+..+...+..+-..-+|+... . .....+-+|+|. +|..=.++.|.+| |.|- ..|
T Consensus 111 ----------~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDe-ad~m~~~aanaLL---K~LE-------epp 169 (365)
T PRK07471 111 ----------NEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDT-ADEMNANAANALL---KVLE-------EPP 169 (365)
T ss_pred ----------ccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEec-hHhcCHHHHHHHH---HHHh-------cCC
Confidence 111112333444555676542 1 124567889996 2222235666665 1111 124
Q ss_pred CCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730 1476 NTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1476 ~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
++..+|+-+++....-|...|||-.|.|.+-
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l 200 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPL 200 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCC
Confidence 5677788788887888888999999998763
No 172
>PRK09087 hypothetical protein; Validated
Probab=96.42 E-value=0.023 Score=64.32 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=35.6
Q ss_pred EEEEeecCC--CCCCChhhhccc---eEeecCCCChHHHHHHHHHHhhh
Q psy4730 935 IYITAMIPT--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 935 ~~~~a~~~~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+++|..+| .....|++.+|+ .++-+.+|+.+++..|+......
T Consensus 120 ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 120 LLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred EEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 455565555 455689999999 89999999999999999987654
No 173
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.41 E-value=0.0092 Score=66.13 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=46.0
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEe-cCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKII-NPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~i-np~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
-|+++|||||||||+++.|...+..-.. ..+..+ +|.......-.+.+....-++....+..++|.+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~----------~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKT----------HHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALR 72 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCC----------cEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhc
Confidence 4799999999999999998777653111 111111 22222111111111100112223345566665533
Q ss_pred cCCCCceEEEEcCCCChHHHH
Q psy4730 1432 STTPDRKWIMFDGPIDAVWIE 1452 (1513)
Q Consensus 1432 ~~~~~~~WivfDG~~d~~wiE 1452 (1513)
. ...+|++|.+-|++-++
T Consensus 73 ~---~pd~ii~gEird~e~~~ 90 (198)
T cd01131 73 Q---DPDVILVGEMRDLETIR 90 (198)
T ss_pred C---CcCEEEEcCCCCHHHHH
Confidence 2 35799999988876443
No 174
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.017 Score=68.36 Aligned_cols=143 Identities=19% Similarity=0.232 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccc---------cccceeEEEe--cCCCCChhhcc
Q psy4730 1339 EKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATM---------KEFKTGYKII--NPKSITMGQLY 1407 (1513)
Q Consensus 1339 ~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~---------~~~~~~~~~i--np~~~t~~eL~ 1407 (1513)
....+.++.-+..|+.++.||+|+||+++...+++++.- .....+. .+.+.+++.+ .|..-
T Consensus 14 ~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC--~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~------ 85 (319)
T PRK08769 14 DQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA--SGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT------ 85 (319)
T ss_pred HHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC--CCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc------
Confidence 334444444456789999999999999999999998852 2111110 1123445555 33210
Q ss_pred ccccCCCCCCccCHHHHHHHHhhc-----cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730 1408 GEFDSASHEWRDGILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus 1408 G~~~~~t~eW~DG~l~~~lR~~~~-----~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
| ..=.-.+-...+|+... ......+.+|+|. +|..=.++-|++| |+|= ..|+++.||+
T Consensus 86 ~------~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~-ae~m~~~AaNaLL---KtLE-------EPp~~~~fiL 148 (319)
T PRK08769 86 G------DKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDP-ADAINRAACNALL---KTLE-------EPSPGRYLWL 148 (319)
T ss_pred c------ccccccccHHHHHHHHHHHhhCcccCCcEEEEecc-HhhhCHHHHHHHH---HHhh-------CCCCCCeEEE
Confidence 0 00011244566777653 2234678999994 4444456667776 2221 1367888999
Q ss_pred eecCCCCCCcchhhccEEEEeeCC
Q psy4730 1483 ECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1483 E~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
-+++....-|.-.|||-.|.|.+-
T Consensus 149 ~~~~~~~lLpTIrSRCq~i~~~~~ 172 (319)
T PRK08769 149 ISAQPARLPATIRSRCQRLEFKLP 172 (319)
T ss_pred EECChhhCchHHHhhheEeeCCCc
Confidence 999999999999999999998753
No 175
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.40 E-value=0.0086 Score=67.66 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=24.0
Q ss_pred hcCCccceeccCCCccchHhHHHHHhcc
Q psy4730 726 LQNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
...+.+++|+||+|||||+++..+....
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567799999999999999999887654
No 176
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.40 E-value=0.0067 Score=73.96 Aligned_cols=114 Identities=19% Similarity=0.271 Sum_probs=65.4
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
...|+|+||||||||++.+.||+.++ +.+..++...++...+.|. | .+++++.+++...
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~--------------~pf~~~da~~L~~~gyvG~-d------~e~~L~~~~~~~~ 174 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILN--------------VPFAIADATTLTEAGYVGE-D------VENILLKLLQAAD 174 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcC--------------CCeEEechhhccccccccc-c------HHHHHHHHHHhCc
Confidence 45899999999999999999997764 2344555555543334443 1 2567777776431
Q ss_pred cc-CCCCceEEEEcCC--CCh--------------HHHHhhhcccCCCCceee-cCCCeeecCCCCeEEEeecCC
Q psy4730 1431 VS-TTPDRKWIMFDGP--IDA--------------VWIENMNTVLDDNKKLCL-INGEIIKMSNTMNLIFECENL 1487 (1513)
Q Consensus 1431 ~~-~~~~~~WivfDG~--~d~--------------~wiE~LNsvLDdn~~L~L-~nGe~i~~~~~~~~iFE~~~l 1487 (1513)
.+ .......++||+. +.+ ...-.|..+|| .....+ +.|.+.. |..-.+++-|+|+
T Consensus 175 ~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~gr~~-~~~~~i~i~TsNi 247 (413)
T TIGR00382 175 YDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGRKH-PYQEFIQIDTSNI 247 (413)
T ss_pred ccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh-ccceecccCCCccc-cCCCeEEEEcCCc
Confidence 11 1123357888952 222 35667788885 333333 2343321 2233445555555
No 177
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.38 E-value=0.023 Score=67.75 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=69.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
++++|.||+|+|||++.+.+++.+..-. ....+..+++..- .+ ...+...+++.+.
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~---------~~~~~i~~~~~~~-------------~~--~~~~~~~i~~~~~ 94 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGED---------WRENFLELNASDE-------------RG--IDVIRNKIKEFAR 94 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCc---------cccceEEeccccc-------------cc--hHHHHHHHHHHHh
Confidence 3689999999999999999988764210 0011222222110 00 0122233333332
Q ss_pred cC---CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730 1432 ST---TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1432 ~~---~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
.. ....+.+++|. .+.+...+.|...+++. ++++.+||.+.+.....++..+||.++.|.+-
T Consensus 95 ~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-------------~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l 161 (319)
T PRK00440 95 TAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-------------SQNTRFILSCNYSSKIIDPIQSRCAVFRFSPL 161 (319)
T ss_pred cCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-------------CCCCeEEEEeCCccccchhHHHHhheeeeCCC
Confidence 21 13468999996 23344445555555432 34567888777777777888999999988763
No 178
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0096 Score=75.71 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=37.4
Q ss_pred ceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++..+||+|.|. .++|.++| ||-. ++++.|+.+.-..||...+..
T Consensus 378 ~v~vi~aTN~p~-~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 378 GVLVIAATNRPD-DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred ceEEEecCCCcc-ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 467888888864 47888888 8876 999999999999999998763
No 179
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.028 Score=68.42 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=34.5
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.|+.+++.+ ..+.+++.+|+..+.+.+|+.+++..+...++..
T Consensus 149 ~~~fIl~t~~~-~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 149 HIKFILATTDV-EKIPKTILSRCLQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred CeEEEEEcCCh-HhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH
Confidence 34555555443 3588999999999999999999999888776643
No 180
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.015 Score=75.09 Aligned_cols=127 Identities=16% Similarity=0.131 Sum_probs=73.4
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhh--hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAK--KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~--~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
..|.++++||+|+||||+.+.|++.+.-.... ...++.| ....+..+++...
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~----------------- 99 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASH----------------- 99 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEecccc-----------------
Confidence 45788999999999999999999998632110 0111111 1122333333110
Q ss_pred cCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcc
Q psy4730 1419 DGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPA 1493 (1513)
Q Consensus 1419 DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPa 1493 (1513)
.-..-+|+.. .. .....+-||+|.. |-.=-+.+|.+|.- |-+ .|+++.|||-++++....|+
T Consensus 100 --~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa-~~L~~~a~naLLk~-----LEe-----pp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 100 --TSVDDAREIIERVQFRPALARYKVYIIDEV-HMLSTAAFNALLKT-----LEE-----PPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred --CCHHHHHHHHHHHhhCcccCCeEEEEEeCh-HhCCHHHHHHHHHH-----Hhc-----CCCCeEEEEEeCChhhhhHH
Confidence 0012233322 11 1245788999972 11112444444311 111 25678889999999999999
Q ss_pred hhhccEEEEeeCC
Q psy4730 1494 TVSRVGMIYFELK 1506 (1513)
Q Consensus 1494 tvsRcg~v~~~~~ 1506 (1513)
-.|||-.+.|.+-
T Consensus 167 I~SR~~~i~f~~l 179 (585)
T PRK14950 167 ILSRCQRFDFHRH 179 (585)
T ss_pred HHhccceeeCCCC
Confidence 9999999988653
No 181
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.35 E-value=0.0071 Score=68.07 Aligned_cols=44 Identities=9% Similarity=0.214 Sum_probs=28.6
Q ss_pred EEEeecCC--CCCCChhhhccce---EeecCCCChHHHHHHHHHHhhhh
Q psy4730 936 YITAMIPT--MNTITGRLLRHMN---IISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 936 ~~~a~~~~--~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
++++-.+| -..+.||+.+||. ++-+.+|+.++...|........
T Consensus 134 i~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~ 182 (219)
T PF00308_consen 134 ILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKER 182 (219)
T ss_dssp EEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHT
T ss_pred EEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHh
Confidence 34454555 3468999999986 48899999999999999876653
No 182
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.34 E-value=0.0094 Score=81.93 Aligned_cols=37 Identities=24% Similarity=0.125 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC
Q psy4730 662 GGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT 698 (1513)
Q Consensus 662 g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~ 698 (1513)
|..+.||+|||||-++|++|...|.|++.+++++-++
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 4456899999999999999999999999999987654
No 183
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.34 E-value=0.015 Score=69.57 Aligned_cols=141 Identities=17% Similarity=0.164 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhc
Q psy4730 1337 YIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQL 1406 (1513)
Q Consensus 1337 ~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL 1406 (1513)
.+....+....-+..|+.++.||+|+||+++.+.+++++.--... ..++..| ...+++.+.|..
T Consensus 14 ~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~------ 87 (329)
T PRK08058 14 VVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDG------ 87 (329)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccc------
Confidence 333444444444567899999999999999999999987532111 1111111 112233333321
Q ss_pred cccccCCCCCCccCHHHHHHHHhhc----c-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEE
Q psy4730 1407 YGEFDSASHEWRDGILAKTFREMAV----S-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus 1407 ~G~~~~~t~eW~DG~l~~~lR~~~~----~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
.. .+ ..-+|+... . ....++.+|+|+ +|..=.++-|++|. +|-+ .|+++.+|
T Consensus 88 --------~~--i~--id~ir~l~~~~~~~~~~~~~kvviI~~-a~~~~~~a~NaLLK-----~LEE-----Pp~~~~~I 144 (329)
T PRK08058 88 --------QS--IK--KDQIRYLKEEFSKSGVESNKKVYIIEH-ADKMTASAANSLLK-----FLEE-----PSGGTTAI 144 (329)
T ss_pred --------cc--CC--HHHHHHHHHHHhhCCcccCceEEEeeh-HhhhCHHHHHHHHH-----HhcC-----CCCCceEE
Confidence 10 11 234454432 1 234678999997 22222334444541 1111 57888999
Q ss_pred EeecCCCCCCcchhhccEEEEeeCC
Q psy4730 1482 FECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1482 FE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
|-+++....-|+-.|||-.|.|.+-
T Consensus 145 l~t~~~~~ll~TIrSRc~~i~~~~~ 169 (329)
T PRK08058 145 LLTENKHQILPTILSRCQVVEFRPL 169 (329)
T ss_pred EEeCChHhCcHHHHhhceeeeCCCC
Confidence 9999999999999999999999764
No 184
>KOG0726|consensus
Probab=96.34 E-value=0.0071 Score=67.59 Aligned_cols=75 Identities=25% Similarity=0.323 Sum_probs=46.3
Q ss_pred HHHhhccCCCCCccCCCC---------ChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceE-
Q psy4730 888 EMILDDLNMPQKETYGAQ---------PAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI- 957 (1513)
Q Consensus 888 ~~~~dd~n~p~~~~~~~q---------~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~- 957 (1513)
.+|+|++--.....|.+. ..||||+|+ +||-.++ |+..|-|+|-- -+++|.|.|-=.+
T Consensus 281 IvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQl---dGFdsrg--------DvKvimATnri-e~LDPaLiRPGrID 348 (440)
T KOG0726|consen 281 IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL---DGFDSRG--------DVKVIMATNRI-ETLDPALIRPGRID 348 (440)
T ss_pred eEEeehhhhhccccccCCCccHHHHHHHHHHHHHhc---cCccccC--------CeEEEEecccc-cccCHhhcCCCccc
Confidence 345577665544455443 458888886 5676665 45556665532 2456655543333
Q ss_pred --eecCCCChHHHHHHHHH
Q psy4730 958 --ISIDSFNEATLSKIFTS 974 (1513)
Q Consensus 958 --~~~~~~~~~~l~~i~~~ 974 (1513)
+-++-|+.++-++||.-
T Consensus 349 rKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 349 RKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred cccccCCCchhhhceeEEE
Confidence 66788999998888864
No 185
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.013 Score=69.87 Aligned_cols=132 Identities=20% Similarity=0.161 Sum_probs=82.8
Q ss_pred HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCC
Q psy4730 1348 ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEW 1417 (1513)
Q Consensus 1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW 1417 (1513)
-+..|+.++.||+|+|||++.+.+|+++.-.... ..++..| .+.+++.+.|..-
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---------------- 82 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---------------- 82 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC----------------
Confidence 4457899999999999999999999998632111 1122211 2334555555210
Q ss_pred ccCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730 1418 RDGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus 1418 ~DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
...+=..-+|+.. .. ....++.+|+|. +|.-=.++-|++| | +| |. .|+++.||+-|++....-|
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~-a~~m~~~aaNaLL---K--~L---EE--Pp~~~~fiL~t~~~~~ll~ 151 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEP-AEAMNRNAANALL---K--SL---EE--PSGDTVLLLISHQPSRLLP 151 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEECC-hhhCCHHHHHHHH---H--HH---hC--CCCCeEEEEEECChhhCcH
Confidence 0111134455543 22 234678888875 3333345666665 1 12 11 3678899999999999989
Q ss_pred chhhccEEEEeeCC
Q psy4730 1493 ATVSRVGMIYFELK 1506 (1513)
Q Consensus 1493 atvsRcg~v~~~~~ 1506 (1513)
.-.|||-.+.|.+-
T Consensus 152 TI~SRc~~~~~~~~ 165 (328)
T PRK05707 152 TIKSRCQQQACPLP 165 (328)
T ss_pred HHHhhceeeeCCCc
Confidence 99999999999764
No 186
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.32 E-value=0.08 Score=68.01 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=43.1
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccc
Q psy4730 705 PSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSAR 768 (1513)
Q Consensus 705 ~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~ 768 (1513)
+.+++-......+....+..+-..+.|||+.|++||||+++++..-........-...++++..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 4445544455556666777778899999999999999999999886654322222234444443
No 187
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.029 Score=70.44 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=35.9
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.+++. .+.+++-+.+|...+.+.+++.+++..++..++..
T Consensus 158 ~~vfI~aTte-~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 158 HIIFIFATTE-VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred CEEEEEEeCC-hHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH
Confidence 4556666543 34688999999999999999999999999988753
No 188
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.11 Score=66.59 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=33.8
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.+++.+++ +++-+++|...+.+..++.+++......++..
T Consensus 154 ~~~fIL~Ttd~~k-il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~ 198 (618)
T PRK14951 154 YLKFVLATTDPQK-VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA 198 (618)
T ss_pred CeEEEEEECCchh-hhHHHHHhceeeecCCCCHHHHHHHHHHHHHH
Confidence 3455656554443 55669999999999999999998888877643
No 189
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.31 E-value=0.014 Score=72.31 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=62.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
+.++|.||||+||||+.+.+++.++ ..+..+++...+.++ +..++.....
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~--------------~~~~~l~a~~~~~~~----------------ir~ii~~~~~ 86 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATD--------------APFEALSAVTSGVKD----------------LREVIEEARQ 86 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEecccccHHH----------------HHHHHHHHHH
Confidence 4799999999999999999987653 234455543221111 1122222211
Q ss_pred c-CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee-cCC-CCCCcchhhccEEEEeeC
Q psy4730 1432 S-TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC-ENL-EFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1432 ~-~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~-~~l-~~asPatvsRcg~v~~~~ 1505 (1513)
. ......-+++|. .+.....+.|-..++++.. .++..| .+. ....|+..|||.++.+.+
T Consensus 87 ~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~i---------------ilI~att~n~~~~l~~aL~SR~~~~~~~~ 150 (413)
T PRK13342 87 RRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTI---------------TLIGATTENPSFEVNPALLSRAQVFELKP 150 (413)
T ss_pred hhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcE---------------EEEEeCCCChhhhccHHHhccceeeEeCC
Confidence 1 123457888885 2344445555555544321 122222 222 246799999999888765
No 190
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.014 Score=75.22 Aligned_cols=127 Identities=19% Similarity=0.215 Sum_probs=73.9
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh---cccccc---------cceeEEEecCCCCChhhccccccCCCCC
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK---SATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHE 1416 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~---~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~e 1416 (1513)
...|++++.||+|+||||+.+.+|+.+.-..... .++..| ....++.+++ .
T Consensus 36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~-----------------~ 98 (620)
T PRK14948 36 RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDA-----------------A 98 (620)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEec-----------------c
Confidence 3458999999999999999999999986422110 011110 0111122221 1
Q ss_pred CccCHHHHHHHHhhc----cC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCC
Q psy4730 1417 WRDGILAKTFREMAV----ST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFAS 1491 (1513)
Q Consensus 1417 W~DG~l~~~lR~~~~----~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~as 1491 (1513)
...| ..-+|+... .+ ....+-||+|. +|..=-+..|++|. . | | ..|+++.||+-+.|....-
T Consensus 99 ~~~~--vd~IReii~~a~~~p~~~~~KViIIDE-ad~Lt~~a~naLLK---~--L---E--ePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 99 SNTG--VDNIRELIERAQFAPVQARWKVYVIDE-CHMLSTAAFNALLK---T--L---E--EPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred ccCC--HHHHHHHHHHHhhChhcCCceEEEEEC-ccccCHHHHHHHHH---H--H---h--cCCcCeEEEEEeCChhhhh
Confidence 2233 244455432 11 24567888996 22111234444431 0 1 0 2456788888888888888
Q ss_pred cchhhccEEEEeeC
Q psy4730 1492 PATVSRVGMIYFEL 1505 (1513)
Q Consensus 1492 PatvsRcg~v~~~~ 1505 (1513)
|+-.|||.++.|.+
T Consensus 166 pTIrSRc~~~~f~~ 179 (620)
T PRK14948 166 PTIISRCQRFDFRR 179 (620)
T ss_pred HHHHhheeEEEecC
Confidence 99999999998763
No 191
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.30 E-value=0.0091 Score=74.93 Aligned_cols=75 Identities=17% Similarity=0.321 Sum_probs=55.6
Q ss_pred HHHhhccCCCCCccCCCCChHHHHHHHHhcCCcc-ccCCceeeeecceEEEEeecCC----------------------C
Q psy4730 888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLY-DFQTVTRVDLVDIIYITAMIPT----------------------M 944 (1513)
Q Consensus 888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y-d~~~~~~~~~~~~~~~~a~~~~----------------------~ 944 (1513)
.+|+||++.-. ...++.||+.++.|.+. .+.......-.+++++|||||- .
T Consensus 298 vLfLDEi~e~~------~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~ 371 (499)
T TIGR00368 298 VLFLDELPEFK------RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYW 371 (499)
T ss_pred eEecCChhhCC------HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHh
Confidence 36789997433 24799999999988763 4545555566799999999983 1
Q ss_pred CCCChhhhccceE-eecCCCChHHH
Q psy4730 945 NTITGRLLRHMNI-ISIDSFNEATL 968 (1513)
Q Consensus 945 ~~~~~r~~~~f~~-~~~~~~~~~~l 968 (1513)
+.+++.|+.||.+ +.+++++.+.+
T Consensus 372 ~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 372 NKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred hhccHhHHhhCCEEEEEcCCCHHHH
Confidence 2589999999999 56777776643
No 192
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.30 E-value=0.049 Score=68.86 Aligned_cols=229 Identities=17% Similarity=0.176 Sum_probs=123.4
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhhc
Q psy4730 707 DLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRR 786 (1513)
Q Consensus 707 ~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~ 786 (1513)
+++-.+....+....+..+...+.||++.|++||||+++...+-........-...++++... ++.+++.+....
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~-----~~~~~~~lfg~~ 213 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIP-----KDLIESELFGHE 213 (469)
T ss_pred cceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCC-----HHHHHHHhcCCC
Confidence 344455555666667777788999999999999999998887766543222222344554432 234445554444
Q ss_pred cCCCCCCCCceE-EEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHH
Q psy4730 787 KGVYGPAMGKKY-IVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIK 865 (1513)
Q Consensus 787 ~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1513)
++.|......+. .+..+ ..+
T Consensus 214 ~g~~~~~~~~~~g~~~~a--------------------------------------~~G--------------------- 234 (469)
T PRK10923 214 KGAFTGANTIRQGRFEQA--------------------------------------DGG--------------------- 234 (469)
T ss_pred CCCCCCCCcCCCCCeeEC--------------------------------------CCC---------------------
Confidence 444322111100 00000 000
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC-
Q psy4730 866 INLAKRNAQATDWYIEKIIQVYEMILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT- 943 (1513)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~- 943 (1513)
.+|+|++. ||. ..-.-|.++++.|.+...+.... .-.|+.+++|++.+
T Consensus 235 ----------------------tl~l~~i~~l~~-------~~q~~L~~~l~~~~~~~~~~~~~-~~~~~rii~~~~~~l 284 (469)
T PRK10923 235 ----------------------TLFLDEIGDMPL-------DVQTRLLRVLADGQFYRVGGYAP-VKVDVRIIAATHQNL 284 (469)
T ss_pred ----------------------EEEEeccccCCH-------HHHHHHHHHHhcCcEEeCCCCCe-EEeeEEEEEeCCCCH
Confidence 12346664 443 23345556666666655443332 23589999999876
Q ss_pred -----CCCCChhhhccceEeecCCCC--h--HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy4730 944 -----MNTITGRLLRHMNIISIDSFN--E--ATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIP 1014 (1513)
Q Consensus 944 -----~~~~~~r~~~~f~~~~~~~~~--~--~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1513)
...+.+.|+.+++.+.+.=|. . +++..+...++..+- ..+...+..++ ..+++..
T Consensus 285 ~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~-~~~~~~~~~~~----~~a~~~L----------- 348 (469)
T PRK10923 285 EQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAA-RELGVEAKLLH----PETEAAL----------- 348 (469)
T ss_pred HHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHH-HHcCCCCCCcC----HHHHHHH-----------
Confidence 457889999999776655554 2 366666666654421 11111110010 1111111
Q ss_pred CCCccccchhhHHHHHhhhcccCCcccCChh
Q psy4730 1015 SKSHYVFNLRDFAKVIMGLTQLPASHCKAPD 1045 (1513)
Q Consensus 1015 ~~~hy~fnlrd~~~~~~g~~~~~~~~~~~~~ 1045 (1513)
...||-=|+|.|.++++-..........+..
T Consensus 349 ~~~~wpgNv~eL~~~i~~~~~~~~~~~i~~~ 379 (469)
T PRK10923 349 TRLAWPGNVRQLENTCRWLTVMAAGQEVLIQ 379 (469)
T ss_pred HhCCCCChHHHHHHHHHHHHHhCCCCcccHH
Confidence 2456666999999999877654433333333
No 193
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.055 Score=65.49 Aligned_cols=189 Identities=21% Similarity=0.297 Sum_probs=108.8
Q ss_pred hhHHHHHHHHhcCCcc--ceeccCCCccchHhHHHHHhccCcC--cccceeeccccccChhHHHHHHHHHhhhhccCCCC
Q psy4730 716 CMQNFFINLYLQNDVP--MMFVGPTGTGKSTIVLNLLLNLSKD--KYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYG 791 (1513)
Q Consensus 716 ~~~~~~~~~~~~~~~~--~ll~G~~g~GKt~~v~~~~~~~~~~--~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~~~~~~ 791 (1513)
.....++...+..+.| +++.|+||||||++++...+.+... .....++|+-...++-++-..|-.++- .
T Consensus 27 ~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~-------~ 99 (366)
T COG1474 27 NQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG-------K 99 (366)
T ss_pred HHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC-------C
Confidence 3444556666666664 6899999999999999998876533 222466777665555544444433321 0
Q ss_pred CCCCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHHHHHhhh
Q psy4730 792 PAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKR 871 (1513)
Q Consensus 792 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (1513)
+|... ....+....+.....+.
T Consensus 100 ~p~~g----------------------------------------------------------~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 100 VPLTG----------------------------------------------------------DSSLEILKRLYDNLSKK 121 (366)
T ss_pred CCCCC----------------------------------------------------------CchHHHHHHHHHHHHhc
Confidence 11100 00112222222222220
Q ss_pred cccchhHHHHHHHHHHHHHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCC
Q psy4730 872 NAQATDWYIEKIIQVYEMILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTIT 948 (1513)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~ 948 (1513)
++ +..+.+||++ |...+. +.|-+++...+-. -+.+.+++..|.. ...++
T Consensus 122 ----~~--------~~IvvLDEid~L~~~~~-------~~LY~L~r~~~~~---------~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 122 ----GK--------TVIVILDEVDALVDKDG-------EVLYSLLRAPGEN---------KVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred ----CC--------eEEEEEcchhhhccccc-------hHHHHHHhhcccc---------ceeEEEEEEeccHHHHHHhh
Confidence 01 1145679998 444442 4444444432211 2345556555554 56799
Q ss_pred hhhhccceE--eecCCCChHHHHHHHHHHhhhhhhc-cchhHHHHHHHHHHH
Q psy4730 949 GRLLRHMNI--ISIDSFNEATLSKIFTSVLDWHFSK-GFADSIVKLSKNIVA 997 (1513)
Q Consensus 949 ~r~~~~f~~--~~~~~~~~~~l~~i~~~~l~~~~~~-~f~~~~~~~~~~~~~ 997 (1513)
||+.++|.. +..++.+.++|..|...-...-|.. .+.+++..++..+++
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a 225 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA 225 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH
Confidence 999988877 5688889999999999988876655 455566666554443
No 194
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.24 E-value=0.044 Score=65.37 Aligned_cols=44 Identities=5% Similarity=0.135 Sum_probs=33.3
Q ss_pred eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
..++.+++.+ ..+.+.+.+|+..+.+.+|+.+++..+...++..
T Consensus 133 ~~lIl~~~~~-~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 133 TRFILSCNYS-SKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred CeEEEEeCCc-cccchhHHHHhheeeeCCCCHHHHHHHHHHHHHH
Confidence 3455555543 4566779999999999999999998888887653
No 195
>KOG2028|consensus
Probab=96.23 E-value=0.026 Score=65.17 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=36.0
Q ss_pred ceEEEEeecC-CCCCCChhhhccceEeecCCCChHHHHHHHHHH
Q psy4730 933 DIIYITAMIP-TMNTITGRLLRHMNIISIDSFNEATLSKIFTSV 975 (1513)
Q Consensus 933 ~~~~~~a~~~-~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~ 975 (1513)
+|.+|+|+.- |--.+...|++|..++.+.....+.+..|...-
T Consensus 250 ~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 250 DITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred ceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 7889977754 466788899999999999999999988887763
No 196
>PRK08118 topology modulation protein; Reviewed
Probab=96.20 E-value=0.0037 Score=67.28 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.7
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|+||+||||||+.+.|++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987765
No 197
>PRK13808 adenylate kinase; Provisional
Probab=96.15 E-value=0.0077 Score=71.11 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.4
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+|+|||||||||..+.|++.++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998775
No 198
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.13 E-value=0.019 Score=68.06 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhc---cc-ccccceeEEEecCCCCChhhcc----
Q psy4730 1336 WYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS---AT-MKEFKTGYKIINPKSITMGQLY---- 1407 (1513)
Q Consensus 1336 ~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~---~~-~~~~~~~~~~inp~~~t~~eL~---- 1407 (1513)
..+....+....-+..|+.++.||.|+||+++...+++++.--..-+. .. ....+.+++.+.|......+..
T Consensus 11 ~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~ 90 (314)
T PRK07399 11 LAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASE 90 (314)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhh
Confidence 333444444444445689999999999999999999998753110000 00 0112334556666432211111
Q ss_pred -ccccCCCCCCccCHHHHHHHHhh----cc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEE
Q psy4730 1408 -GEFDSASHEWRDGILAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus 1408 -G~~~~~t~eW~DG~l~~~lR~~~----~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
+..+. ......-+-..-+|+.. .. ....++-+|+|+. |..=.++-|++|. +| .=||+..||
T Consensus 91 ~~~~~~-~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~a-e~m~~~aaNaLLK-----~L------EEPp~~~fI 157 (314)
T PRK07399 91 AEEAGL-KRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDA-ETMNEAAANALLK-----TL------EEPGNGTLI 157 (314)
T ss_pred hhhccc-cccccccCcHHHHHHHHHHHccCcccCCceEEEEEch-hhcCHHHHHHHHH-----HH------hCCCCCeEE
Confidence 10000 00011112223345442 12 2357899999982 1111122333431 11 115577889
Q ss_pred EeecCCCCCCcchhhccEEEEeeCC
Q psy4730 1482 FECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1482 FE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
+-+++....-|+-.|||-.|.|.+-
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l 182 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRL 182 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCC
Confidence 9899999999999999999999763
No 199
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.13 E-value=0.051 Score=59.63 Aligned_cols=42 Identities=7% Similarity=0.205 Sum_probs=32.9
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHH
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSV 975 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~ 975 (1513)
+..++.+++.+ ..+.+.+.+|..++.+.+|+.+++..+....
T Consensus 126 ~~~~il~~~~~-~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 126 NTLFILITPSP-EKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred CeEEEEEECCh-HhChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence 34555555544 5788999999999999999999987777664
No 200
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.12 E-value=0.017 Score=77.73 Aligned_cols=83 Identities=18% Similarity=0.293 Sum_probs=59.9
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC------------------------
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM------------------------ 944 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~------------------------ 944 (1513)
+++||+-...++ +...|.|++|.|-+-|... ..+...+..+|.+.|-..
T Consensus 615 vllDeieka~~~------v~~~Llq~le~g~~~d~~g-~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~ 687 (821)
T CHL00095 615 VLFDEIEKAHPD------IFNLLLQILDDGRLTDSKG-RTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQY 687 (821)
T ss_pred EEECChhhCCHH------HHHHHHHHhccCceecCCC-cEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccH
Confidence 456888755543 7899999999988776543 345556788887766430
Q ss_pred ------------CCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730 945 ------------NTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 945 ------------~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
....|.|++|+ .++...+.+.+++.+|....+..
T Consensus 688 ~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 688 KRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred HHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 11456788898 78889999999999988876654
No 201
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.014 Score=71.86 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=71.5
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh---------hcccccc---------cceeEEEecCCCCChhhccccc
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK---------KSATMKE---------FKTGYKIINPKSITMGQLYGEF 1410 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~---------~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~ 1410 (1513)
...|++++.||+|+||||+.+.+|+++.--... ..++..| ...++..+++...
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~--------- 106 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASN--------- 106 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeeccccc---------
Confidence 346899999999999999999999998631100 0011111 0111222221100
Q ss_pred cCCCCCCccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730 1411 DSASHEWRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus 1411 ~~~t~eW~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
.| ..-+|+.. ..+ ...++-+|+|. +|-.--++.|.+|. . |- ..|+.+.+||-++
T Consensus 107 --------~~--id~Ir~l~~~~~~~p~~~~~kvvIIde-a~~l~~~~~~~LLk---~--LE-----ep~~~t~~Il~t~ 165 (397)
T PRK14955 107 --------NS--VDDIRLLRENVRYGPQKGRYRVYIIDE-VHMLSIAAFNAFLK---T--LE-----EPPPHAIFIFATT 165 (397)
T ss_pred --------CC--HHHHHHHHHHHhhchhcCCeEEEEEeC-hhhCCHHHHHHHHH---H--Hh-----cCCCCeEEEEEeC
Confidence 11 12233322 111 24567888886 11111133343331 0 10 2467888899888
Q ss_pred CCCCCCcchhhccEEEEeeC
Q psy4730 1486 NLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1486 ~l~~asPatvsRcg~v~~~~ 1505 (1513)
+.....|+..|||.++.|.+
T Consensus 166 ~~~kl~~tl~sR~~~v~f~~ 185 (397)
T PRK14955 166 ELHKIPATIASRCQRFNFKR 185 (397)
T ss_pred ChHHhHHHHHHHHHHhhcCC
Confidence 88889898999999988765
No 202
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.11 E-value=0.015 Score=70.63 Aligned_cols=125 Identities=15% Similarity=0.166 Sum_probs=71.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCccC
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
.|+.+++||+|+|||++.+.+++++.--... ..++..| ....+..+++.. ..+
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-----------------~~~ 98 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS-----------------NNG 98 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-----------------cCC
Confidence 4789999999999999999999998632110 0001000 011223333321 011
Q ss_pred --HHHHHHHHhhccC-CCCceEEEEcCC--CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh
Q psy4730 1421 --ILAKTFREMAVST-TPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 1495 (1513)
Q Consensus 1421 --~l~~~lR~~~~~~-~~~~~WivfDG~--~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv 1495 (1513)
-+-.++......+ ...++.+|+|.. +.. +..|.+|. ++.+ .|+++.+||-+.++....|+..
T Consensus 99 ~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---~~~~~Ll~-----~le~-----~~~~~~lIl~~~~~~~l~~~l~ 165 (355)
T TIGR02397 99 VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---SAFNALLK-----TLEE-----PPEHVVFILATTEPHKIPATIL 165 (355)
T ss_pred HHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---HHHHHHHH-----HHhC-----CccceeEEEEeCCHHHHHHHHH
Confidence 1122333322222 246688999962 222 23344332 0111 3567888999999888888999
Q ss_pred hccEEEEeeC
Q psy4730 1496 SRVGMIYFEL 1505 (1513)
Q Consensus 1496 sRcg~v~~~~ 1505 (1513)
|||-.+.+.+
T Consensus 166 sr~~~~~~~~ 175 (355)
T TIGR02397 166 SRCQRFDFKR 175 (355)
T ss_pred hheeEEEcCC
Confidence 9999888764
No 203
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.10 E-value=0.0066 Score=78.12 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=90.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCC----CC--CCccCHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSA----SH--EWRDGILAKT 1425 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~----t~--eW~DG~l~~~ 1425 (1513)
-||+|.|++|+|||++.+.|++.+.. ...+..+++ ..|...|+|.+|-. ++ .|..|+|.++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~------------~~pfv~i~~-~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A 83 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPP------------IMPFVELPL-GVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA 83 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCc------------CCCeEecCc-ccchhhcccchhhhhhhhcCcccCCCCCeeeC
Confidence 38999999999999999999987653 123455655 57889999997622 12 3566665432
Q ss_pred HHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC----CCCcchhhccE
Q psy4730 1426 FREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE----FASPATVSRVG 1499 (1513)
Q Consensus 1426 lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~----~asPatvsRcg 1499 (1513)
..--+++| ..+++.-...|-.+|++...-.-..|.....|.++++|- ++|-. ...|+...|.+
T Consensus 84 ----------~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIA-t~np~e~~g~L~~~LldRf~ 152 (589)
T TIGR02031 84 ----------PRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIA-TYDPAEGGGGLPDHLLDRLA 152 (589)
T ss_pred ----------CCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEE-ecCCccccCCCCHHHHHhcc
Confidence 12356778 567888889999999876554445688899999988885 65553 57889999998
Q ss_pred E
Q psy4730 1500 M 1500 (1513)
Q Consensus 1500 ~ 1500 (1513)
+
T Consensus 153 l 153 (589)
T TIGR02031 153 L 153 (589)
T ss_pred C
Confidence 8
No 204
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.10 E-value=0.011 Score=77.13 Aligned_cols=139 Identities=21% Similarity=0.218 Sum_probs=89.8
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcc---------c---ccc--------cceeEEEecCCCCChhhcccccc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA---------T---MKE--------FKTGYKIINPKSITMGQLYGEFD 1411 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~---------~---~~~--------~~~~~~~inp~~~t~~eL~G~~~ 1411 (1513)
.||+|.|++|+||||+.+.|++.+-.+...... + ..| .....++.-|...|...|+|..|
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 689999999999999999999887321110000 0 000 00112233466678889999876
Q ss_pred CC----CCC--CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEe
Q psy4730 1412 SA----SHE--WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE 1483 (1513)
Q Consensus 1412 ~~----t~e--W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE 1483 (1513)
.. +++ ..-|+|.. ...--+++| ..+++.-.+.|-.+|++...-.-..|.....|.++.++.
T Consensus 106 ~~~~l~~g~~~~~~G~L~~----------A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIa- 174 (633)
T TIGR02442 106 IERALREGEKAFQPGLLAE----------AHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIG- 174 (633)
T ss_pred HHHHhhcCCeeecCcceee----------cCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEE-
Confidence 32 111 23343321 123567888 457888888888888877655556788888888887777
Q ss_pred ecCCC--CCCcchhhccEEE
Q psy4730 1484 CENLE--FASPATVSRVGMI 1501 (1513)
Q Consensus 1484 ~~~l~--~asPatvsRcg~v 1501 (1513)
+.|.. ..+|+...|+++.
T Consensus 175 t~np~eg~l~~~L~dR~~l~ 194 (633)
T TIGR02442 175 TMNPEEGDLRPQLLDRFGLC 194 (633)
T ss_pred ecCCCCCCCCHHHHhhcceE
Confidence 55553 4678999999863
No 205
>KOG0734|consensus
Probab=96.10 E-value=0.0093 Score=71.79 Aligned_cols=44 Identities=25% Similarity=0.171 Sum_probs=32.7
Q ss_pred ceEEEEeecCCC-----CCCChhhhccceEeecCCCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPTM-----NTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~~-----~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
.|.++||+|-|. -.=|.||=+| +.++.|+...-..|+..++...
T Consensus 439 GiIvigATNfpe~LD~AL~RPGRFD~~---v~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 439 GIIVIGATNFPEALDKALTRPGRFDRH---VTVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred ceEEEeccCChhhhhHHhcCCCcccee---EecCCCCcccHHHHHHHHHhcC
Confidence 688999999762 1224455554 7899999999999998887654
No 206
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.022 Score=68.86 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=34.6
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCcc-ccCCceeeeecceEEEEeecCC
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLY-DFQTVTRVDLVDIIYITAMIPT 943 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y-d~~~~~~~~~~~~~~~~a~~~~ 943 (1513)
+|+||+-=-+. .+||-|||=+|.|..- .+..-...+--++++++||||.
T Consensus 287 LFLDElpef~~------~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpc 336 (490)
T COG0606 287 LFLDELPEFKR------SILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPC 336 (490)
T ss_pred EEeeccchhhH------HHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCC
Confidence 56677642221 5899999999998653 3434445555599999999994
No 207
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=96.09 E-value=0.006 Score=73.06 Aligned_cols=87 Identities=14% Similarity=0.198 Sum_probs=53.7
Q ss_pred HHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccC-CceeeeecceEEEEeecCCC------------CCCChhhhcc
Q psy4730 888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQ-TVTRVDLVDIIYITAMIPTM------------NTITGRLLRH 954 (1513)
Q Consensus 888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~-~~~~~~~~~~~~~~a~~~~~------------~~~~~r~~~~ 954 (1513)
.+++||++.-..+ -...|.+.+++|...-.+ .....---...++||+||.. -.+++.+++|
T Consensus 124 iccIDe~dk~~~~------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSR 197 (331)
T PF00493_consen 124 ICCIDEFDKMKED------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSR 197 (331)
T ss_dssp EEEECTTTT--CH------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC
T ss_pred eeeecccccccch------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhh
Confidence 3667999966644 478899999998775433 34444444899999999961 2699999999
Q ss_pred ceEee--cCCCChHHHHHHHHHHhhhhh
Q psy4730 955 MNIIS--IDSFNEATLSKIFTSVLDWHF 980 (1513)
Q Consensus 955 f~~~~--~~~~~~~~l~~i~~~~l~~~~ 980 (1513)
|-+++ .|.|+.+.-..|-..++..+.
T Consensus 198 FDLif~l~D~~d~~~D~~la~~il~~~~ 225 (331)
T PF00493_consen 198 FDLIFLLRDKPDEEEDERLAEHILDSHR 225 (331)
T ss_dssp -SEEECC--TTT-HHHHHHHHHHHTTT-
T ss_pred cCEEEEeccccccccccccceEEEeccc
Confidence 99976 478887777777777776654
No 208
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.026 Score=70.93 Aligned_cols=138 Identities=23% Similarity=0.249 Sum_probs=74.0
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccccceeEEEecCCCCChhhccccccCCCCCCccCHH-HHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGIL-AKTFR 1427 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l-~~~lR 1427 (1513)
..|+.++.||+|+||||+.+.+|++++-.+... .++..|. .+..+..... .+++ .+|..+ .-|+= .+.++
T Consensus 37 i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~--nc~~i~~g~~--~d~~-eidaas---~~gvd~ir~I~ 108 (486)
T PRK14953 37 VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE--NCVEIDKGSF--PDLI-EIDAAS---NRGIDDIRALR 108 (486)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH--HHHHHhcCCC--CcEE-EEeCcc---CCCHHHHHHHH
Confidence 457889999999999999999999987322111 1111110 0000110000 0111 112111 11211 12223
Q ss_pred Hhhc-c-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730 1428 EMAV-S-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1428 ~~~~-~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
+.+. . ....++-+|+|. +|....+..|.+|.- |.+ .|+++.+||-++++....|+-.|||..+.|.+
T Consensus 109 ~~~~~~P~~~~~KVvIIDE-ad~Lt~~a~naLLk~-----LEe-----pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ 177 (486)
T PRK14953 109 DAVSYTPIKGKYKVYIIDE-AHMLTKEAFNALLKT-----LEE-----PPPRTIFILCTTEYDKIPPTILSRCQRFIFSK 177 (486)
T ss_pred HHHHhCcccCCeeEEEEEC-hhhcCHHHHHHHHHH-----Hhc-----CCCCeEEEEEECCHHHHHHHHHHhceEEEcCC
Confidence 2222 1 134678899996 232223445555421 111 36688889988888888777789999998865
Q ss_pred C
Q psy4730 1506 K 1506 (1513)
Q Consensus 1506 ~ 1506 (1513)
-
T Consensus 178 l 178 (486)
T PRK14953 178 P 178 (486)
T ss_pred C
Confidence 3
No 209
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.034 Score=64.55 Aligned_cols=139 Identities=16% Similarity=0.184 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccc---ccccceeEEEecCCCCChhhccccccCCCCC
Q psy4730 1340 KIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSAT---MKEFKTGYKIINPKSITMGQLYGEFDSASHE 1416 (1513)
Q Consensus 1340 k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~---~~~~~~~~~~inp~~~t~~eL~G~~~~~t~e 1416 (1513)
+..+..+.-+..|+.++.||.|+||+++...+|+.+.-.. ....+ ....+.+++.|.|..-+ ..
T Consensus 8 ~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~-~~~~c~~~~~~~HPD~~~i~p~~~~--~~---------- 74 (290)
T PRK05917 8 ALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKET-SPEAAYKISQKIHPDIHEFSPQGKG--RL---------- 74 (290)
T ss_pred HHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCC-CccHHHHHhcCCCCCEEEEecCCCC--Cc----------
Confidence 3344444556679999999999999999999999885211 11000 01223455666553211 00
Q ss_pred CccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCC
Q psy4730 1417 WRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFAS 1491 (1513)
Q Consensus 1417 W~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~as 1491 (1513)
+=...+|+.. ..+ ....+.+|+|+ +|.-=.++-|++| |+| | ..|+++.||+-+++....-
T Consensus 75 ----I~idqiR~l~~~~~~~p~e~~~kv~ii~~-ad~mt~~AaNaLL---K~L-----E--EPp~~~~fiL~~~~~~~ll 139 (290)
T PRK05917 75 ----HSIETPRAIKKQIWIHPYESPYKIYIIHE-ADRMTLDAISAFL---KVL-----E--DPPQHGVIILTSAKPQRLP 139 (290)
T ss_pred ----CcHHHHHHHHHHHhhCccCCCceEEEEec-hhhcCHHHHHHHH---HHh-----h--cCCCCeEEEEEeCChhhCc
Confidence 1123334432 222 35678888886 3333456667776 222 1 1477899999999999998
Q ss_pred cchhhccEEEEeeCC
Q psy4730 1492 PATVSRVGMIYFELK 1506 (1513)
Q Consensus 1492 PatvsRcg~v~~~~~ 1506 (1513)
|.-.|||-.+.|.+-
T Consensus 140 ~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 140 PTIRSRSLSIHIPME 154 (290)
T ss_pred HHHHhcceEEEccch
Confidence 988999999999863
No 210
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.031 Score=73.06 Aligned_cols=45 Identities=9% Similarity=0.200 Sum_probs=34.9
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.+++.+. .|.+-+++|...+.+.+++.+.+......++..
T Consensus 149 ~vrFILaTTe~~-kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 149 HVKFLLATTDPQ-KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred CeEEEEECCCch-hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 455666655543 377889999999999999999999888777653
No 211
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.041 Score=69.58 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=34.3
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.++..+ +.+++.+++|..++.+.+++.+++......++..
T Consensus 149 ~v~fIL~Ttd~-~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~ 193 (546)
T PRK14957 149 YVKFILATTDY-HKIPVTILSRCIQLHLKHISQADIKDQLKIILAK 193 (546)
T ss_pred CceEEEEECCh-hhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH
Confidence 35566666544 4455669999999999999999998888877654
No 212
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.04 E-value=0.022 Score=68.22 Aligned_cols=126 Identities=14% Similarity=0.187 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhcccccc
Q psy4730 1336 WYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFD 1411 (1513)
Q Consensus 1336 ~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~ 1411 (1513)
.+..-.-++..+.....+|+|.|++||||+++.+.+...-.+- ...+..||+.+++ -.+|||.-.
T Consensus 7 ~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~-----------~~pfv~vnc~~~~~~~l~~~lfG~~~ 75 (329)
T TIGR02974 7 AFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW-----------QGPLVKLNCAALSENLLDSELFGHEA 75 (329)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc-----------CCCeEEEeCCCCChHHHHHHHhcccc
Confidence 3444455566667778899999999999999999887543320 1356788888886 357888532
Q ss_pred CC---CCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730 1412 SA---SHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus 1412 ~~---t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
.. ......|.+..+ ..-=+++| +.+++..-..|-.+|++...-.+.+. -..+.++|+|+-+
T Consensus 76 g~~~ga~~~~~G~~~~a----------~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~at 141 (329)
T TIGR02974 76 GAFTGAQKRHQGRFERA----------DGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGS--QTLQVDVRLVCAT 141 (329)
T ss_pred ccccCcccccCCchhhC----------CCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCC--ceeccceEEEEec
Confidence 10 001233433211 12458888 57788888999999987765444333 3556789999977
No 213
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.03 E-value=0.021 Score=68.29 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-ccccc---------ccceeEEEecCCCCChhhcc
Q psy4730 1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMK---------EFKTGYKIINPKSITMGQLY 1407 (1513)
Q Consensus 1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~---------~~~~~~~~inp~~~t~~eL~ 1407 (1513)
-....+.++.-+..|+.++.||+|+||+++...+|+++.=..... .+++. +.+.+++.+.|..-.
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~----- 85 (334)
T PRK07993 11 YEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK----- 85 (334)
T ss_pred HHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc-----
Confidence 345566666677789999999999999999999999985221111 12222 134556666663110
Q ss_pred ccccCCCCCCccCHHHHHHHHhhc-----cCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730 1408 GEFDSASHEWRDGILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus 1408 G~~~~~t~eW~DG~l~~~lR~~~~-----~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
..+=..-+|+... ...+.++.+|+|. +|.-=.++=|++| |+| | ..|+++-||.
T Consensus 86 -----------~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~-ae~m~~~AaNaLL---KtL-----E--EPp~~t~fiL 143 (334)
T PRK07993 86 -----------SSLGVDAVREVTEKLYEHARLGGAKVVWLPD-AALLTDAAANALL---KTL-----E--EPPENTWFFL 143 (334)
T ss_pred -----------ccCCHHHHHHHHHHHhhccccCCceEEEEcc-hHhhCHHHHHHHH---HHh-----c--CCCCCeEEEE
Confidence 0122344555432 2235778899986 3333334556665 221 1 1477888999
Q ss_pred eecCCCCCCcchhhccEEEEeeCC
Q psy4730 1483 ECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1483 E~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
-+++....-|.-+|||-.++|.+-
T Consensus 144 ~t~~~~~lLpTIrSRCq~~~~~~~ 167 (334)
T PRK07993 144 ACREPARLLATLRSRCRLHYLAPP 167 (334)
T ss_pred EECChhhChHHHHhccccccCCCC
Confidence 999999998988999999998764
No 214
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.01 E-value=0.015 Score=76.23 Aligned_cols=119 Identities=12% Similarity=0.041 Sum_probs=79.7
Q ss_pred HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCc
Q psy4730 1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~ 1418 (1513)
++-.+.....+|+|.|+|||||+++.+.+.....+- ...+..+|+.+++ -++|||+.......-.
T Consensus 340 ~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~-----------~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~ 408 (638)
T PRK11388 340 FGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA-----------AGPYIAVNCQLYPDEALAEEFLGSDRTDSENGR 408 (638)
T ss_pred HHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc-----------CCCeEEEECCCCChHHHHHHhcCCCCcCccCCC
Confidence 334445677899999999999999999987654321 1356889999987 4689997632222222
Q ss_pred cCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730 1419 DGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus 1419 DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
-|.|. .+ ..-=+++| |.+++.--+.|-.+|++.....+.+. -..+-++|+|+-+
T Consensus 409 ~g~~~----~a------~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~t 464 (638)
T PRK11388 409 LSKFE----LA------HGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSR--RLIPVDVRVIATT 464 (638)
T ss_pred CCcee----EC------CCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCC--ceEEeeEEEEEec
Confidence 33321 11 12458888 67888888999999977766555333 3345568999866
No 215
>PRK14532 adenylate kinase; Provisional
Probab=96.00 E-value=0.01 Score=65.06 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.7
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.|+|+|+|||||||..+.|++.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998765
No 216
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.99 E-value=0.018 Score=72.82 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=80.8
Q ss_pred HHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC----CCCC
Q psy4730 1346 EMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA----SHEW 1417 (1513)
Q Consensus 1346 ~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~----t~eW 1417 (1513)
.......+|+|.|++||||+.+.+.+...-.+ ..-.+..||+.+++ -.+|||+-... ....
T Consensus 230 ~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-----------~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~ 298 (526)
T TIGR02329 230 LYARSDATVLILGESGTGKELVAQAIHQLSGR-----------RDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGG 298 (526)
T ss_pred HHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc-----------CCCCEEEeccccCChhHHHHHhcCCcccccccccccc
Confidence 44556789999999999999999998755322 12356789998887 46899963211 1112
Q ss_pred ccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee-cCC
Q psy4730 1418 RDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC-ENL 1487 (1513)
Q Consensus 1418 ~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~-~~l 1487 (1513)
.-|+|..+ ..-=++|| |.+++..-..|-.+|.+.....+.+.+ ..+.++|+++-+ .||
T Consensus 299 ~~Gl~e~A----------~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~--~~~~dvRiIaat~~~l 359 (526)
T TIGR02329 299 RTGLIEAA----------HRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTE--PVPVDVRVVAATHCAL 359 (526)
T ss_pred cccchhhc----------CCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCc--eeeecceEEeccCCCH
Confidence 23333211 12448888 788999999999999887766664444 456679999976 344
No 217
>PRK06620 hypothetical protein; Validated
Probab=95.98 E-value=0.015 Score=65.20 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=33.0
Q ss_pred EEEEeecCC-CCCCChhhhccce---EeecCCCChHHHHHHHHHHhh
Q psy4730 935 IYITAMIPT-MNTITGRLLRHMN---IISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 935 ~~~~a~~~~-~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
.+++|..|| .-.+ |++.+|+. ++.+.+|+.+++..+......
T Consensus 116 ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 116 LLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred EEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 456666655 3357 99999999 999999999998888877544
No 218
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.01 Score=76.31 Aligned_cols=124 Identities=19% Similarity=0.204 Sum_probs=73.0
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
+..|+.++.||+|+||||+.+.|+++++--.+. ..++..| ...++..++..+ .
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s-----------------~ 98 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS-----------------N 98 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC-----------------c
Confidence 346899999999999999999999998632111 0111111 011122222111 0
Q ss_pred cCHHHHHHHHh----hcc-CCCCceEEEEcCCCChHHHHhhhccc---CCCCceeecCCCeeecCCCCeEEEeecCCCCC
Q psy4730 1419 DGILAKTFREM----AVS-TTPDRKWIMFDGPIDAVWIENMNTVL---DDNKKLCLINGEIIKMSNTMNLIFECENLEFA 1490 (1513)
Q Consensus 1419 DG~l~~~lR~~----~~~-~~~~~~WivfDG~~d~~wiE~LNsvL---Ddn~~L~L~nGe~i~~~~~~~~iFE~~~l~~a 1490 (1513)
-| ..-+|+. ... .....+-+|+|. +|-.=-+..|.+| ++ .|+++.|||-|++....
T Consensus 99 ~~--v~~ir~l~~~~~~~p~~~~~KVvIIde-v~~Lt~~a~naLLk~LEe-------------pp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 99 TG--VDDIRELRENVKYLPSRSRYKIFIIDE-VHMLSTNAFNALLKTLEE-------------PPPHVKFIFATTEPHKV 162 (576)
T ss_pred cC--HHHHHHHHHHHHhccccCCceEEEEEC-hhhCCHHHHHHHHHHHHc-------------CCCCeEEEEEeCChhhh
Confidence 11 1122322 111 234568899996 2211123344443 33 37799999999999988
Q ss_pred CcchhhccEEEEeeC
Q psy4730 1491 SPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1491 sPatvsRcg~v~~~~ 1505 (1513)
.|+-.|||..+.|.+
T Consensus 163 ~~tI~SRc~~~~f~~ 177 (576)
T PRK14965 163 PITILSRCQRFDFRR 177 (576)
T ss_pred hHHHHHhhhhhhcCC
Confidence 888899999988764
No 219
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.94 E-value=0.15 Score=61.22 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=49.2
Q ss_pred HHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceE--ee
Q psy4730 889 MILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNI--IS 959 (1513)
Q Consensus 889 ~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~--~~ 959 (1513)
+|+|++. ||. ..-.-|-.+++.|.+...+... ..-.|+.+|+|++.+ ...+.+.|+.|++. +.
T Consensus 97 L~Ldei~~L~~-------~~Q~~Ll~~l~~~~~~~~g~~~-~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~ 168 (329)
T TIGR02974 97 LFLDELATASL-------LVQEKLLRVIEYGEFERVGGSQ-TLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVIT 168 (329)
T ss_pred EEeCChHhCCH-------HHHHHHHHHHHcCcEEecCCCc-eeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcC
Confidence 3457776 443 1334445556655554333322 233589999999875 35677889999966 55
Q ss_pred cCCCC--hHHHHHHHHHHhhh
Q psy4730 960 IDSFN--EATLSKIFTSVLDW 978 (1513)
Q Consensus 960 ~~~~~--~~~l~~i~~~~l~~ 978 (1513)
+++.. .+++..+...++..
T Consensus 169 lPpLReR~eDI~~L~~~fl~~ 189 (329)
T TIGR02974 169 LPPLRERQEDIMLLAEHFAIR 189 (329)
T ss_pred CCchhhhhhhHHHHHHHHHHH
Confidence 55554 24677776666544
No 220
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.94 E-value=0.01 Score=70.87 Aligned_cols=144 Identities=21% Similarity=0.282 Sum_probs=85.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccc---------------------c-----ceeEEEecCCCCChhh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKE---------------------F-----KTGYKIINPKSITMGQ 1405 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~---------------------~-----~~~~~~inp~~~t~~e 1405 (1513)
.||+|.|++||||||+.+.+++.+..........-.+ . ++.+.. =|-..|-+.
T Consensus 39 ~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lp~~~ted~ 117 (350)
T CHL00081 39 GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVD-LPLGATEDR 117 (350)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcccccccceecccccee-cCCCCchhh
Confidence 4899999999999999999998886532110000000 0 011111 245567889
Q ss_pred ccccccCCCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEe
Q psy4730 1406 LYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE 1483 (1513)
Q Consensus 1406 L~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE 1483 (1513)
|||.+|... .+..|.. .++.+.-. ....--+++| +.+++.-...|-.+|++...-.-..|...+.|..+.++.
T Consensus 118 l~G~iD~~~-al~~g~~--~~~~GlL~-~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfivia- 192 (350)
T CHL00081 118 VCGTIDIEK-ALTEGVK--AFEPGLLA-KANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVG- 192 (350)
T ss_pred ccCcccHHH-HhhcCcc--cccCCeee-ecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEe-
Confidence 999998653 3444421 12222110 1234678888 567887777777777764333334577777676554444
Q ss_pred ecCCC--CCCcchhhccEEE
Q psy4730 1484 CENLE--FASPATVSRVGMI 1501 (1513)
Q Consensus 1484 ~~~l~--~asPatvsRcg~v 1501 (1513)
+.|.. ...|+..-|.+|.
T Consensus 193 T~np~eg~l~~~LldRf~l~ 212 (350)
T CHL00081 193 SGNPEEGELRPQLLDRFGMH 212 (350)
T ss_pred ccCcccCCCCHHHHHHhCce
Confidence 55543 3788888888863
No 221
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.93 E-value=0.17 Score=65.44 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=73.3
Q ss_pred CCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccc----------eEEecCceEEEEEecCCCCCCCCCch
Q psy4730 1122 PGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGT----------EISLNPTSMIFITMNPGYAGRTELPD 1191 (1513)
Q Consensus 1122 ~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~----------~i~~~p~~~iFiTmNp~y~gr~~LP~ 1191 (1513)
.|.-+++||++.+++++-..+ .++++.+. +...|. +.++.-++.+-++.||.. -.++.+
T Consensus 217 ngGtL~Ldei~~L~~~~q~~L-------l~~L~~~~--i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~--l~~l~~ 285 (608)
T TIGR00764 217 HKGVLYIDEIKTMPLEVQQYL-------LTALQDKK--FPITGQSENSSGAMVRTEPVPCDFILVASGNLDD--LEGMHP 285 (608)
T ss_pred CCCEEEEEChHhCCHHHHHHH-------HHHHHhCc--EEecCccccccccccCCCCCccceEEEEECCHHH--HhhcCH
Confidence 788899999999997765433 34444332 222221 122334788999999852 136889
Q ss_pred hHHhhhh------cccccCCCh----HHHHHHH---HHhcC-cc-chHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHH
Q psy4730 1192 NLKVLFR------SVAMMVPDY----AMIGEIS---LYSMG-FQ-NAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKS 1256 (1513)
Q Consensus 1192 nLk~lFR------~v~~~~PD~----~~I~ei~---L~~~G-F~-~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~ 1256 (1513)
.|+.+|+ .+....|+. ..++... +-..| .. -++.-..+++. .+++....+.+...-.|.+..
T Consensus 286 ~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~---~~~R~ag~r~~lsl~~R~L~~ 362 (608)
T TIGR00764 286 ALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVR---EAQRRAGRKDHLTLRLRELGG 362 (608)
T ss_pred HHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH---HHHHHHhcccccCCCHHHHHH
Confidence 9999999 233334442 1122211 11122 11 01122223333 334444556666777899999
Q ss_pred HHHHhhhhhh
Q psy4730 1257 VLNAAGSLKI 1266 (1513)
Q Consensus 1257 vl~~a~~l~~ 1266 (1513)
+++.|....+
T Consensus 363 llR~A~~iA~ 372 (608)
T TIGR00764 363 LVRAAGDIAK 372 (608)
T ss_pred HHHHHHHHHH
Confidence 9999866543
No 222
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.91 E-value=0.059 Score=62.66 Aligned_cols=50 Identities=24% Similarity=0.425 Sum_probs=37.4
Q ss_pred cccccchhhhhHHHHHHHHhcCCc-cceeccCCCccchHhHHHHHhccCcC
Q psy4730 707 DLIIPTNVTCMQNFFINLYLQNDV-PMMFVGPTGTGKSTIVLNLLLNLSKD 756 (1513)
Q Consensus 707 ~~~v~t~~~~~~~~~~~~~~~~~~-~~ll~G~~g~GKt~~v~~~~~~~~~~ 756 (1513)
..|.++....+....+...+..+. .++++||+|+|||++++.+...+...
T Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~ 70 (269)
T TIGR03015 20 DFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE 70 (269)
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC
Confidence 346677666666666666666555 58899999999999999998876543
No 223
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.90 E-value=0.023 Score=71.86 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=82.7
Q ss_pred HHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC----CCCC
Q psy4730 1346 EMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA----SHEW 1417 (1513)
Q Consensus 1346 ~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~----t~eW 1417 (1513)
..-.+..+|+|.|++||||+.+.+.+...+....+..+ ....-.+..||+.+++ -.+|||+-+.. +...
T Consensus 237 ~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S---~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~ 313 (538)
T PRK15424 237 LYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQ---GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGG 313 (538)
T ss_pred HHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccC---ccCCCCeEEeecccCChhhHHHHhcCCccccccCccccc
Confidence 34556789999999999999999999876321111000 0012357888988887 46899963311 1112
Q ss_pred ccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee-cCCC
Q psy4730 1418 RDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC-ENLE 1488 (1513)
Q Consensus 1418 ~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~-~~l~ 1488 (1513)
.-|+|..+ ..-=++|| |.+++..-..|-.+|++.....+.+.. .++-++|+|+-| .||.
T Consensus 314 ~~Gl~e~A----------~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~--~~~~dvRiIaat~~~L~ 375 (538)
T PRK15424 314 RAGLFEIA----------HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ--PVPVDVRVISATHCDLE 375 (538)
T ss_pred cCCchhcc----------CCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCc--eeccceEEEEecCCCHH
Confidence 33433211 12458889 788999999999999887666654433 456789999976 4443
No 224
>PF13173 AAA_14: AAA domain
Probab=95.88 E-value=0.032 Score=57.17 Aligned_cols=27 Identities=33% Similarity=0.600 Sum_probs=23.8
Q ss_pred CCccceeccCCCccchHhHHHHHhccC
Q psy4730 728 NDVPMMFVGPTGTGKSTIVLNLLLNLS 754 (1513)
Q Consensus 728 ~~~~~ll~G~~g~GKt~~v~~~~~~~~ 754 (1513)
|++.+++.||.|||||+++..++..+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999987653
No 225
>PRK14530 adenylate kinase; Provisional
Probab=95.87 E-value=0.0088 Score=67.20 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.8
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|+|+|||||||+.+.|++.++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999998875
No 226
>KOG0743|consensus
Probab=95.85 E-value=0.048 Score=65.55 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=33.0
Q ss_pred EEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhh
Q psy4730 937 ITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 937 ~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
|-++|+. -.++|.|+| |.-. ++|.+.+-+....+++++|..
T Consensus 342 vFTTNh~-EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 342 VFTTNHK-EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred EEecCCh-hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 4455553 358999999 7776 999999999999999998864
No 227
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.012 Score=72.95 Aligned_cols=138 Identities=22% Similarity=0.226 Sum_probs=86.5
Q ss_pred HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccccceeEEEecCC-CCChhhccccccCCCCCCccC
Q psy4730 1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKEFKTGYKIINPK-SITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus 1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~~~~~~~~inp~-~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
.....-+..|+-++.||=|+||||+.+++|++++-.+.. ..+++.|.. +.-|+.. .++.-| +|-.++. |
T Consensus 30 nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~--Ck~I~~g~~~DviE----iDaASn~---g 100 (515)
T COG2812 30 NALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS--CKEINEGSLIDVIE----IDAASNT---G 100 (515)
T ss_pred HHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh--hHhhhcCCcccchh----hhhhhcc---C
Confidence 344444567999999999999999999999999865431 112222211 1122222 111111 2222222 3
Q ss_pred HHHHHHHHhhcc----C-CCCceEEEEcC-CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcch
Q psy4730 1421 ILAKTFREMAVS----T-TPDRKWIMFDG-PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPAT 1494 (1513)
Q Consensus 1421 ~l~~~lR~~~~~----~-~~~~~WivfDG-~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPat 1494 (1513)
| .-+|+.... + ..+.+-+|.|- |+-+ -.+.|++| |+|= ..|+++.|||-|++.....|.-
T Consensus 101 V--ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--~~afNALL---KTLE-------EPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 101 V--DDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--KQAFNALL---KTLE-------EPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred h--HHHHHHHHHhccCCccccceEEEEecHHhhh--HHHHHHHh---cccc-------cCccCeEEEEecCCcCcCchhh
Confidence 2 345655432 2 34568888884 5544 58889997 2221 2588999999999999999999
Q ss_pred hhccEEEEe
Q psy4730 1495 VSRVGMIYF 1503 (1513)
Q Consensus 1495 vsRcg~v~~ 1503 (1513)
+|||--..|
T Consensus 167 lSRcq~f~f 175 (515)
T COG2812 167 LSRCQRFDF 175 (515)
T ss_pred hhccccccc
Confidence 999986554
No 228
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.83 E-value=0.03 Score=72.24 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=74.3
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhh--hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAK--KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~--~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
..|+.++.||+|+||||+.+.+++.+.-.... ..++..| ...+++.+++.... | .
T Consensus 38 l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~-----~---------v 103 (614)
T PRK14971 38 LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNN-----S---------V 103 (614)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccC-----C---------H
Confidence 45789999999999999999999998521110 0111111 11223333322100 0 0
Q ss_pred cCHHHHHHHHhhcc-CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeee-cCCCCeEEEeecCCCCCCcchhh
Q psy4730 1419 DGILAKTFREMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIK-MSNTMNLIFECENLEFASPATVS 1496 (1513)
Q Consensus 1419 DG~l~~~lR~~~~~-~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~-~~~~~~~iFE~~~l~~asPatvs 1496 (1513)
| -+-.++.+.... ....++.+|+|+ +|-.=.++.|.+|. .+. .|+++.|||-+++.....|+-.|
T Consensus 104 d-~Ir~li~~~~~~P~~~~~KVvIIde-a~~Ls~~a~naLLK-----------~LEepp~~tifIL~tt~~~kIl~tI~S 170 (614)
T PRK14971 104 D-DIRNLIEQVRIPPQIGKYKIYIIDE-VHMLSQAAFNAFLK-----------TLEEPPSYAIFILATTEKHKILPTILS 170 (614)
T ss_pred H-HHHHHHHHHhhCcccCCcEEEEEEC-cccCCHHHHHHHHH-----------HHhCCCCCeEEEEEeCCchhchHHHHh
Confidence 0 112223322222 234678999996 11111234444441 111 36678899999888999999999
Q ss_pred ccEEEEeeCC
Q psy4730 1497 RVGMIYFELK 1506 (1513)
Q Consensus 1497 Rcg~v~~~~~ 1506 (1513)
||.++.|.+-
T Consensus 171 Rc~iv~f~~l 180 (614)
T PRK14971 171 RCQIFDFNRI 180 (614)
T ss_pred hhheeecCCC
Confidence 9999988753
No 229
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.83 E-value=0.012 Score=74.67 Aligned_cols=125 Identities=18% Similarity=0.156 Sum_probs=71.9
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhh-hcccccc---------cceeEEEecCCCCChhhccccccCCCCCCcc
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAK-KSATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWRD 1419 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~-~~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~D 1419 (1513)
..|.+++.||+|+||||+.++|++++.--... ..++..| ....+..|++. ...
T Consensus 37 i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a-----------------~~~ 99 (624)
T PRK14959 37 VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGA-----------------SNR 99 (624)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecc-----------------ccc
Confidence 35789999999999999999999998631111 1111111 11122223221 111
Q ss_pred CHHHHHHHHh----hc-cCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730 1420 GILAKTFREM----AV-STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus 1420 G~l~~~lR~~----~~-~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
|+ ..+|+. .. ......+.||+|. .++. +..|++|.- |-+ .++++.|||-+++.....+
T Consensus 100 ~I--d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~---~a~naLLk~-----LEE-----P~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 100 GI--DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR---EAFNALLKT-----LEE-----PPARVTFVLATTEPHKFPV 164 (624)
T ss_pred CH--HHHHHHHHHHHhhhhcCCceEEEEEChHhCCH---HHHHHHHHH-----hhc-----cCCCEEEEEecCChhhhhH
Confidence 22 223332 11 1234678999995 2233 334444321 000 2467889998888888877
Q ss_pred chhhccEEEEeeCC
Q psy4730 1493 ATVSRVGMIYFELK 1506 (1513)
Q Consensus 1493 atvsRcg~v~~~~~ 1506 (1513)
...|||..+.|.+-
T Consensus 165 TI~SRcq~i~F~pL 178 (624)
T PRK14959 165 TIVSRCQHFTFTRL 178 (624)
T ss_pred HHHhhhhccccCCC
Confidence 77999999887653
No 230
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.80 E-value=0.006 Score=61.60 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+|.|+|||||||+.+.|++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999998875
No 231
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.79 E-value=0.13 Score=65.32 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=42.3
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeecccccc
Q psy4730 705 PSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSART 769 (1513)
Q Consensus 705 ~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t 769 (1513)
|.+++-......+....+..+-..+.|||+.|++||||+++++..-........-...+++....
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 33444444445556667777788999999999999999999998765432222222345555443
No 232
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.75 E-value=0.012 Score=64.19 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=21.3
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+++|+|||||||..+.|++.++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998775
No 233
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.73 E-value=0.021 Score=68.26 Aligned_cols=81 Identities=12% Similarity=0.222 Sum_probs=55.1
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcC-CccccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCCh-
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHK-HLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNE- 965 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~-~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~- 965 (1513)
+|+||+|.-..+ ....|-+.++.| .-+++.......-..+.++|++||....+++.++.||.+ +.+++|+.
T Consensus 148 L~lDEInrL~~~------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~ 221 (350)
T CHL00081 148 LYVDEVNLLDDH------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDP 221 (350)
T ss_pred EEecChHhCCHH------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCCh
Confidence 678999955433 344455556554 344444333333348889999999877799999999997 78899985
Q ss_pred HHHHHHHHHH
Q psy4730 966 ATLSKIFTSV 975 (1513)
Q Consensus 966 ~~l~~i~~~~ 975 (1513)
+.-..|...-
T Consensus 222 ~~e~~il~~~ 231 (350)
T CHL00081 222 ELRVKIVEQR 231 (350)
T ss_pred HHHHHHHHhh
Confidence 6655666553
No 234
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=95.73 E-value=0.013 Score=73.42 Aligned_cols=141 Identities=14% Similarity=0.106 Sum_probs=89.5
Q ss_pred HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccc-------------cccceeEEEecCCCCChhhccccccCCC
Q psy4730 1348 ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATM-------------KEFKTGYKIINPKSITMGQLYGEFDSAS 1414 (1513)
Q Consensus 1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~-------------~~~~~~~~~inp~~~t~~eL~G~~~~~t 1414 (1513)
....|.++|+|||||||||+.+.++..+..+........ ......-++-.+.+.+...++|.-
T Consensus 208 a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg---- 283 (499)
T TIGR00368 208 AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGG---- 283 (499)
T ss_pred ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCc----
Confidence 446688999999999999999999876543321100000 000001112223444566666621
Q ss_pred CCCccCHHHHHHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC------
Q psy4730 1415 HEWRDGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN------ 1486 (1513)
Q Consensus 1415 ~eW~DG~l~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~------ 1486 (1513)
...+.|.++.+ ..-.+.+|. .+++...|.|..+|++...-.-..|..+..|.++++|..+..
T Consensus 284 ~~~~pG~i~lA----------~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~ 353 (499)
T TIGR00368 284 PIPLPGEISLA----------HNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHY 353 (499)
T ss_pred cccchhhhhcc----------CCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcC
Confidence 12455655322 235788884 568889999999998865443445667888999999998864
Q ss_pred -----------------CCCCCcchhhccEEEE
Q psy4730 1487 -----------------LEFASPATVSRVGMIY 1502 (1513)
Q Consensus 1487 -----------------l~~asPatvsRcg~v~ 1502 (1513)
+...|++...|..+..
T Consensus 354 ~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~ 386 (499)
T TIGR00368 354 GGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSV 386 (499)
T ss_pred CCCcccccCCHHHHHHHhhhccHhHHhhCCEEE
Confidence 2358888888988864
No 235
>smart00350 MCM minichromosome maintenance proteins.
Probab=95.72 E-value=0.052 Score=69.05 Aligned_cols=126 Identities=11% Similarity=0.219 Sum_probs=79.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEE---ecCCCCChhhccccccCCCCCCc--cCHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKI---INPKSITMGQLYGEFDSASHEWR--DGILAKTF 1426 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~---inp~~~t~~eL~G~~~~~t~eW~--DG~l~~~l 1426 (1513)
-.|+|+|+||+|||++.+.+++...+ ..+.. .+...++...+ .++.+++|. -|.+..
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r-------------~~~~~~~~~~~~~l~~~~~---~~~~~g~~~~~~G~l~~-- 298 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPR-------------AVYTTGKGSSAVGLTAAVT---RDPETREFTLEGGALVL-- 298 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCc-------------ceEcCCCCCCcCCccccce---EccCcceEEecCccEEe--
Confidence 37999999999999999999887543 11111 01111222111 233445553 333221
Q ss_pred HHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeec-CCCeeecCCCCeEEEeecCCC-------------CC
Q psy4730 1427 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLI-NGEIIKMSNTMNLIFECENLE-------------FA 1490 (1513)
Q Consensus 1427 R~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~-nGe~i~~~~~~~~iFE~~~l~-------------~a 1490 (1513)
...--+++| ..+++.-...|..+|++. .+++. .|....+|..+++|--+.... ..
T Consensus 299 --------A~~Gil~iDEi~~l~~~~q~~L~e~me~~-~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l 369 (509)
T smart00350 299 --------ADNGVCCIDEFDKMDDSDRTAIHEAMEQQ-TISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDL 369 (509)
T ss_pred --------cCCCEEEEechhhCCHHHHHHHHHHHhcC-EEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCC
Confidence 122466777 345666677778888654 55554 588888999988887766442 68
Q ss_pred CcchhhccEEEEee
Q psy4730 1491 SPATVSRVGMIYFE 1504 (1513)
Q Consensus 1491 sPatvsRcg~v~~~ 1504 (1513)
+||.+||..|+++-
T Consensus 370 ~~~lLsRFdLi~~~ 383 (509)
T smart00350 370 PAPILSRFDLLFVV 383 (509)
T ss_pred ChHHhCceeeEEEe
Confidence 99999999998754
No 236
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.41 Score=61.40 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=35.1
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.+++.+ +.|.+-+.+|...+.+..++.+++......++..
T Consensus 148 ~~~fIL~tte~-~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~ 192 (584)
T PRK14952 148 HLIFIFATTEP-EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ 192 (584)
T ss_pred CeEEEEEeCCh-HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH
Confidence 45566666444 5788899999999999999999988888777653
No 237
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.69 E-value=0.023 Score=69.76 Aligned_cols=114 Identities=19% Similarity=0.252 Sum_probs=65.5
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
..+|+|+||||||||++.+.|++.++ +.+.+++...++...+.|.- .++++..+++...
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~--------------~pf~~id~~~l~~~gyvG~d-------~e~~l~~l~~~~~ 166 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILD--------------VPFAIADATTLTEAGYVGED-------VENILLKLLQAAD 166 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC--------------CCceecchhhcccCCcccch-------HHHHHHHHHHhcc
Confidence 46899999999999999999997764 34566666665544444431 1234444443221
Q ss_pred c-cCCCCceEEEEcC--CCCh--------------HHHHhhhcccCCCCceeecC-CCeeecCCCCeEEEeecCC
Q psy4730 1431 V-STTPDRKWIMFDG--PIDA--------------VWIENMNTVLDDNKKLCLIN-GEIIKMSNTMNLIFECENL 1487 (1513)
Q Consensus 1431 ~-~~~~~~~WivfDG--~~d~--------------~wiE~LNsvLDdn~~L~L~n-Ge~i~~~~~~~~iFE~~~l 1487 (1513)
. -......-|++|. -+.+ ...-.|-.+|| .....+|. |.+.. |..-.+++-|+|+
T Consensus 167 ~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Le-g~~~~v~~~gg~~~-~~~~~~~i~t~ni 239 (412)
T PRK05342 167 YDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILE-GTVASVPPQGGRKH-PQQEFIQVDTTNI 239 (412)
T ss_pred ccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHh-cCeEEeCCCCCcCc-CCCCeEEeccCCc
Confidence 0 0112346788883 1111 25567888886 55666653 33322 2234455555555
No 238
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.69 E-value=0.13 Score=68.09 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=39.4
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeecccc
Q psy4730 707 DLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSA 767 (1513)
Q Consensus 707 ~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~ 767 (1513)
+++-......+....+..+-..+.|||++|++|||||.++..+-........-...+++..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~ 437 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 437 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEeccc
Confidence 3433334444555566667788999999999999999999887654432222223444443
No 239
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.69 E-value=0.023 Score=64.71 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=23.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.+++|.||+|||||++.++++.....
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999998877653
No 240
>PRK06851 hypothetical protein; Provisional
Probab=95.65 E-value=0.015 Score=69.78 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=30.5
Q ss_pred CccceeccCCCccchHhHHHHHhccCcCcccceeecccccc
Q psy4730 729 DVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSART 769 (1513)
Q Consensus 729 ~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t 769 (1513)
.+..++.|+||||||+++..+...+....+......++..-
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dP 254 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDP 254 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 34688999999999999999988776666655555554433
No 241
>KOG0482|consensus
Probab=95.64 E-value=0.15 Score=61.46 Aligned_cols=245 Identities=18% Similarity=0.206 Sum_probs=149.8
Q ss_pred hccccCcccchhhcccceecccccc-cc--ccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEe
Q psy4730 1093 KNKITDKTISADDLRSLFFGNFLGN-TI--IFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISL 1169 (1513)
Q Consensus 1093 ~~~~~~~~~~~~~~~~l~f~~fv~~-~~--~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~ 1169 (1513)
+.+.++-..+.+-+++.+.|..+-. +| +..|.-+|+|||+.+.+.---+ |+.++.+..-++.--|-...+
T Consensus 407 GrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtA-------IHEVMEQQTISIaKAGI~TtL 479 (721)
T KOG0482|consen 407 GRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTA-------IHEVMEQQTISIAKAGINTTL 479 (721)
T ss_pred CCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHH-------HHHHHHhhhhhhhhhccccch
Confidence 3444555667788888898888753 33 4578889999999988655432 233333332222233555678
Q ss_pred cCceEEEEEecCCCC---CC------CCCchhHHhhhhccccc--CCCh---HHHHHHHHH-------------------
Q psy4730 1170 NPTSMIFITMNPGYA---GR------TELPDNLKVLFRSVAMM--VPDY---AMIGEISLY------------------- 1216 (1513)
Q Consensus 1170 ~p~~~iFiTmNp~y~---gr------~~LP~nLk~lFR~v~~~--~PD~---~~I~ei~L~------------------- 1216 (1513)
|..|+|.+.-||-|+ -| -.||.+|-++|--+..+ .||. ...++-..+
T Consensus 480 NAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~ 559 (721)
T KOG0482|consen 480 NARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNL 559 (721)
T ss_pred hhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHH
Confidence 899999999999652 22 35999999999888766 4544 222222222
Q ss_pred -------hcC--ccchHHHHHHHHHHHHHHHhhc-cCCCCCCcchhhHHHHHHHhhhhhh-hCCCChHHHHHHHHHHhhc
Q psy4730 1217 -------SMG--FQNAKILAEKIVYTYKLCSEQL-SSQSHYDYGMRAVKSVLNAAGSLKI-KYPEKDEFVIVLRAIIDVN 1285 (1513)
Q Consensus 1217 -------~~G--F~~a~~la~ki~~~~~l~~~~l-s~q~~yd~glR~lk~vl~~a~~l~~-~~~~~~E~~~l~~ai~~~~ 1285 (1513)
+.- -.-+..|+..|+..|-.+++.. ++.++--..-|.+-+||+.+..+.+ ...+.-|..-+-+||+.+-
T Consensus 560 mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 560 MRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 111 2234678889999998776554 2333333467888899988766654 3445556666888888887
Q ss_pred CCCCcc--cch--------hhHHHHhhccCCCCCCCCCCchHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHh
Q psy4730 1286 MPKFLV--QDL--------PLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILV 1350 (1513)
Q Consensus 1286 ~pkl~~--~d~--------~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~ 1350 (1513)
++|..- +|. .....++.++...-. ....-...+.+.|...|+ ++..+.+|++=|..+++
T Consensus 640 ~sK~sL~~~~~~~~~~~~~~~if~iirel~~e~g----~~~v~~s~~~~r~~~kGf--s~~ql~~~i~ey~~lnV 708 (721)
T KOG0482|consen 640 MSKDSLYQDDGQKEDTSATDAIFAIIRELAGEGG----KRCVKLSNAEQRCVRKGF--SEAQLKKCIDEYAELNV 708 (721)
T ss_pred hhhcccccccccccccchHHHHHHHHHHHHhhcC----CceeeHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCe
Confidence 777422 211 112233444433100 111123455667777777 46778899998887643
No 242
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.046 Score=69.36 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=36.0
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.||.+++.+. .|.+.+++|+..+.+..++.+++......++..
T Consensus 154 ~v~FILaTtep~-kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~ 198 (700)
T PRK12323 154 HVKFILATTDPQ-KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE 198 (700)
T ss_pred CceEEEEeCChH-hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH
Confidence 456777766543 567899999999999999999999888877653
No 243
>KOG2004|consensus
Probab=95.62 E-value=0.058 Score=67.57 Aligned_cols=112 Identities=23% Similarity=0.320 Sum_probs=69.8
Q ss_pred HhhccCCCCCccCCCCC--hHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHH
Q psy4730 890 ILDDLNMPQKETYGAQP--AVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEAT 967 (1513)
Q Consensus 890 ~~dd~n~p~~~~~~~q~--~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~ 967 (1513)
++|++-.-.+..-|... .||+|--=.+ ..|-|-=--..+.+..+.|||+.|. --.|||-|+-|.-+|-++....+.
T Consensus 510 LiDEvDKlG~g~qGDPasALLElLDPEQN-anFlDHYLdVp~DLSkVLFicTAN~-idtIP~pLlDRMEvIelsGYv~eE 587 (906)
T KOG2004|consen 510 LIDEVDKLGSGHQGDPASALLELLDPEQN-ANFLDHYLDVPVDLSKVLFICTANV-IDTIPPPLLDRMEVIELSGYVAEE 587 (906)
T ss_pred EeehhhhhCCCCCCChHHHHHHhcChhhc-cchhhhccccccchhheEEEEeccc-cccCChhhhhhhheeeccCccHHH
Confidence 34666655544444332 2444321111 2232222223456667888877765 346999999999999999999999
Q ss_pred HHHHHHHHhhhhhhc--cchhHHHHHHHHHHHHHHHHH
Q psy4730 968 LSKIFTSVLDWHFSK--GFADSIVKLSKNIVAATFHVY 1003 (1513)
Q Consensus 968 l~~i~~~~l~~~~~~--~f~~~~~~~~~~~~~~~~~~~ 1003 (1513)
-.+|-..+|-....+ +..++-.++....+.+.|+-|
T Consensus 588 Kv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y 625 (906)
T KOG2004|consen 588 KVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY 625 (906)
T ss_pred HHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHH
Confidence 999999987654322 566666666666666666655
No 244
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=95.61 E-value=0.039 Score=72.44 Aligned_cols=84 Identities=13% Similarity=0.185 Sum_probs=53.3
Q ss_pred HHhhccC-CCCCccCCCCChHHHHHHHHhcCCc-cccCCceeeeecceEEEEeecCC------------CCCCChhhhcc
Q psy4730 889 MILDDLN-MPQKETYGAQPAVELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPT------------MNTITGRLLRH 954 (1513)
Q Consensus 889 ~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~------------~~~~~~r~~~~ 954 (1513)
+++||++ ||... -..|-++++.+.+ ..+.......-.++.++||+||. -..+|+.++.|
T Consensus 561 L~IDEidkms~~~-------Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSR 633 (915)
T PTZ00111 561 CCIDELDKCHNES-------RLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTR 633 (915)
T ss_pred EEecchhhCCHHH-------HHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhh
Confidence 4568888 55422 2334445555433 12222223333489999999994 24799999999
Q ss_pred ceEe--ecCCCChHHHHHHHHHHhhhh
Q psy4730 955 MNII--SIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 955 f~~~--~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
|-++ .+|.|+.+.=..|-..++..|
T Consensus 634 FDLIf~l~D~~d~~~D~~lA~hI~~~~ 660 (915)
T PTZ00111 634 FDLIYLVLDHIDQDTDQLISLSIAKDF 660 (915)
T ss_pred hcEEEEecCCCChHHHHHHHHHHHHhh
Confidence 9775 578888887666666666543
No 245
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.61 E-value=0.054 Score=62.68 Aligned_cols=151 Identities=18% Similarity=0.289 Sum_probs=87.6
Q ss_pred HcCccccHHHHHHHHHHHHHHHhcc-eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhc
Q psy4730 1328 KRNAQATDWYIEKIIQVYEMILVRH-GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQL 1406 (1513)
Q Consensus 1328 ~~~l~~~~~~~~k~~qL~~~~~~~~-gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL 1406 (1513)
.+++..-++.+..+..+.+++.... -.+|+|.+||||.|+.+ ||..+.. .++..|. ++ .=
T Consensus 7 ~m~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~r-Laa~i~~-------------~~~~~i~---~~--~~ 67 (268)
T PF12780_consen 7 KMNLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLAR-LAAFICG-------------YEVFQIE---IT--KG 67 (268)
T ss_dssp -------HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHH-HHHHHTT-------------EEEE-TT---TS--TT
T ss_pred ccceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHH-HHHHHhc-------------cceEEEE---ee--CC
Confidence 3556666777888888888887543 47899999999999988 4444432 2223222 11 11
Q ss_pred cccccCCCCCCccCHHHHHHHHhhccCCCCc-eEEEEcC-CCChHHHHhhhcccCCCCceeecCCCe-------------
Q psy4730 1407 YGEFDSASHEWRDGILAKTFREMAVSTTPDR-KWIMFDG-PIDAVWIENMNTVLDDNKKLCLINGEI------------- 1471 (1513)
Q Consensus 1407 ~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~-~WivfDG-~~d~~wiE~LNsvLDdn~~L~L~nGe~------------- 1471 (1513)
|| -.+|.+-+ -++++++.- .+++ ..++=|. -+|+..+|.+|++|...-.--|=++|.
T Consensus 68 y~-----~~~f~~dL-k~~~~~ag~--~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~ 139 (268)
T PF12780_consen 68 YS-----IKDFKEDL-KKALQKAGI--KGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAK 139 (268)
T ss_dssp TH-----HHHHHHHH-HHHHHHHHC--S-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHH
T ss_pred cC-----HHHHHHHH-HHHHHHHhc--cCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHH
Confidence 33 12355443 344554432 2233 4444454 447889999999995432222211110
Q ss_pred ----------------eecCCCCeEEEeecCCCC-------CCcchhhccEEEEeeC
Q psy4730 1472 ----------------IKMSNTMNLIFECENLEF-------ASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1472 ----------------i~~~~~~~~iFE~~~l~~-------asPatvsRcg~v~~~~ 1505 (1513)
=++..|+++++=++.... .-||.+++|.|.|+++
T Consensus 140 ~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~ 196 (268)
T PF12780_consen 140 AEGISDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDP 196 (268)
T ss_dssp HCT--SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES
T ss_pred HcCCCCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCc
Confidence 024578899988766543 5799999999999985
No 246
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.59 E-value=0.037 Score=67.96 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=22.1
Q ss_pred CccceeccCCCccchHhHHHHHhcc
Q psy4730 729 DVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 729 ~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
..++||+||||||||++++.+...+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998655
No 247
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.57 E-value=0.18 Score=64.03 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=35.0
Q ss_pred cccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhc
Q psy4730 707 DLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLN 752 (1513)
Q Consensus 707 ~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~ 752 (1513)
+++-......+....+..+-..+.|||+.|++||||+.+++..-..
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred heeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 3433334445566667777889999999999999999999987654
No 248
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.57 E-value=0.023 Score=67.93 Aligned_cols=139 Identities=18% Similarity=0.242 Sum_probs=83.0
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhc---ccccc---------------cceeE-EEecCCCCC--hhhc---
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS---ATMKE---------------FKTGY-KIINPKSIT--MGQL--- 1406 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~---~~~~~---------------~~~~~-~~inp~~~t--~~eL--- 1406 (1513)
..-|+||||||.||||.+--||.-+..+.+... .+++. -.+.+ .+..|+.+. +..|
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 668899999999999999999888774433221 11110 01111 223444333 1111
Q ss_pred -cccccCCCCCCccCHHHHHHHHhhccCCCCceEEEEcCCCC--------------------------hHHHHhhhcccC
Q psy4730 1407 -YGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFDGPID--------------------------AVWIENMNTVLD 1459 (1513)
Q Consensus 1407 -~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfDG~~d--------------------------~~wiE~LNsvLD 1459 (1513)
.=-+|..++...|+....=|+...+...+....+|++.-.- +.-+=++=+++-
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~~~s~~~ 362 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNLFSLMY 362 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCchhHHHHHHH
Confidence 01256677889999888888887665555666666663221 111223333332
Q ss_pred C-C-CceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEE
Q psy4730 1460 D-N-KKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGM 1500 (1513)
Q Consensus 1460 d-n-~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~ 1500 (1513)
. + +..++++|++|+ +|+..|+|-.+-||..
T Consensus 363 e~~~PV~YvT~GQ~VP-----------eDI~va~~~~Lv~~~~ 394 (407)
T COG1419 363 ETRLPVSYVTNGQRVP-----------EDIVVANPDYLVRRIL 394 (407)
T ss_pred HhCCCeEEEeCCCCCC-----------chhhhcChHHHHHHHh
Confidence 2 2 677888999886 5677888887777754
No 249
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.57 E-value=0.014 Score=63.88 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+++|+|||||||+.+.|++.++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998764
No 250
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.57 E-value=0.014 Score=66.05 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=21.8
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+|+|||||||||..+.|++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998875
No 251
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.57 E-value=0.46 Score=61.25 Aligned_cols=45 Identities=9% Similarity=0.151 Sum_probs=34.6
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.+++..++ +.+-+.+|+..+.+..|+.+.+......++..
T Consensus 162 ~~~fIl~tte~~k-ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~k 206 (598)
T PRK09111 162 HVKFIFATTEIRK-VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAK 206 (598)
T ss_pred CeEEEEEeCChhh-hhHHHHhheeEEEecCCCHHHHHHHHHHHHHH
Confidence 3455555544433 67779999999999999999999999888653
No 252
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.55 E-value=0.28 Score=62.50 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=39.4
Q ss_pred hhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeecccccc
Q psy4730 713 NVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSART 769 (1513)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t 769 (1513)
....+....+..+-..+.|||+.|++||||+.++..+-........-...++++...
T Consensus 194 ~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 194 PAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP 250 (509)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC
Confidence 344455566777788999999999999999999998876543222223355555443
No 253
>KOG0727|consensus
Probab=95.53 E-value=0.028 Score=61.69 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=23.4
Q ss_pred hcCCccceeccCCCccchHhHHHHHhc
Q psy4730 726 LQNDVPMMFVGPTGTGKSTIVLNLLLN 752 (1513)
Q Consensus 726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~ 752 (1513)
++.-+-||+.||||||||++++....+
T Consensus 186 idpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 566678999999999999999988753
No 254
>KOG0742|consensus
Probab=95.53 E-value=0.2 Score=58.92 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=54.4
Q ss_pred ccchHHHHHHhcCEEEEEEcCCC--------------------CCCCCCCCCccccccchhhhhHHHHHHHH--hc----
Q psy4730 674 TETSKDLAKAVAKQCIVFNCSDR--------------------PTFPPNLRPSDLIIPTNVTCMQNFFINLY--LQ---- 727 (1513)
Q Consensus 674 te~vk~La~~lG~~~~v~ncs~~--------------------~~f~~~~~~~~~~v~t~~~~~~~~~~~~~--~~---- 727 (1513)
..+-+++-..||+|-.+--.|-. +.-.+...+.+++++..-..|...+-..- .+
T Consensus 303 ~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~a 382 (630)
T KOG0742|consen 303 LVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQA 382 (630)
T ss_pred hhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccc
Confidence 34567777888887655443321 01122345788888887777777654432 12
Q ss_pred CCccceeccCCCccchHhHHHHHhccCc
Q psy4730 728 NDVPMMFVGPTGTGKSTIVLNLLLNLSK 755 (1513)
Q Consensus 728 ~~~~~ll~G~~g~GKt~~v~~~~~~~~~ 755 (1513)
.-+++||.||||||||+....+.++..-
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGl 410 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGL 410 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCC
Confidence 2248999999999999999999887543
No 255
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.52 E-value=0.092 Score=63.60 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=31.4
Q ss_pred EEEeecCC--CCCCChhhhccce---EeecCCCChHHHHHHHHH
Q psy4730 936 YITAMIPT--MNTITGRLLRHMN---IISIDSFNEATLSKIFTS 974 (1513)
Q Consensus 936 ~~~a~~~~--~~~~~~r~~~~f~---~~~~~~~~~~~l~~i~~~ 974 (1513)
+++|-.|| .+.+.|||.+||. ++-+.+|+.++...|...
T Consensus 212 vltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 212 VLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred EEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 34555566 5678899999996 488999999999988887
No 256
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.51 E-value=0.13 Score=61.67 Aligned_cols=80 Identities=11% Similarity=0.244 Sum_probs=54.1
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCC-ccccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCCh-
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKH-LYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNE- 965 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~-~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~- 965 (1513)
+|+||+|.-.. .....|-++++.|. -+.+.......-..+.++|++||....+++.++.||.+ +.+++|+.
T Consensus 135 L~lDEi~~L~~------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~ 208 (337)
T TIGR02030 135 LYIDEVNLLED------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDV 208 (337)
T ss_pred EEecChHhCCH------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCH
Confidence 56799995432 24455556666553 24443333333347889999998877899999999998 78899976
Q ss_pred HHHHHHHHH
Q psy4730 966 ATLSKIFTS 974 (1513)
Q Consensus 966 ~~l~~i~~~ 974 (1513)
+.-..|...
T Consensus 209 eer~eIL~~ 217 (337)
T TIGR02030 209 ELRVEIVER 217 (337)
T ss_pred HHHHHHHHh
Confidence 555566555
No 257
>PRK14526 adenylate kinase; Provisional
Probab=95.51 E-value=0.026 Score=63.08 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
++|+|||||||||..+.|++.++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 258
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.013 Score=66.80 Aligned_cols=58 Identities=28% Similarity=0.394 Sum_probs=45.3
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
..-|+|+||||||||-+.++||+.++ |.+.+-+.-++|-.-+.| |=.+-++.+++..+
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~Ln--------------VPFaiADATtLTEAGYVG-------EDVENillkLlqaa 154 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILN--------------VPFAIADATTLTEAGYVG-------EDVENILLKLLQAA 154 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhC--------------CCeeeccccchhhccccc-------hhHHHHHHHHHHHc
Confidence 45899999999999999999999986 566666777777665555 33456788887765
No 259
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.48 E-value=0.088 Score=67.78 Aligned_cols=68 Identities=10% Similarity=0.249 Sum_probs=45.8
Q ss_pred hhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHH
Q psy4730 891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSK 970 (1513)
Q Consensus 891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~ 970 (1513)
||+..+-..+ ..-.||+-+-+. -..+.||.+++.+. .|++-+++|+..+.+.+++.+.+..
T Consensus 125 IDEah~Ls~~-----a~NALLKtLEEP-------------p~~v~FIL~Tt~~~-kLl~TI~SRC~~~~f~~Ls~~ei~~ 185 (647)
T PRK07994 125 IDEVHMLSRH-----SFNALLKTLEEP-------------PEHVKFLLATTDPQ-KLPVTILSRCLQFHLKALDVEQIRQ 185 (647)
T ss_pred EechHhCCHH-----HHHHHHHHHHcC-------------CCCeEEEEecCCcc-ccchHHHhhheEeeCCCCCHHHHHH
Confidence 4777755432 234566655542 12345666655433 5788899999999999999999988
Q ss_pred HHHHHhh
Q psy4730 971 IFTSVLD 977 (1513)
Q Consensus 971 i~~~~l~ 977 (1513)
....++.
T Consensus 186 ~L~~il~ 192 (647)
T PRK07994 186 QLEHILQ 192 (647)
T ss_pred HHHHHHH
Confidence 8877764
No 260
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.48 E-value=0.0092 Score=68.69 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=22.1
Q ss_pred EEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
|+++|.|||||||+.+.|++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988863
No 261
>KOG0989|consensus
Probab=95.42 E-value=0.011 Score=67.14 Aligned_cols=56 Identities=23% Similarity=0.272 Sum_probs=40.8
Q ss_pred CceEEEEcC-CC--ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730 1436 DRKWIMFDG-PI--DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1436 ~~~WivfDG-~~--d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
-.+-||||. +. ...| -+|-.++|+- +.+++|+|=+..++..-+..+|||.=..|.+
T Consensus 129 ~fKiiIlDEcdsmtsdaq-~aLrr~mE~~-------------s~~trFiLIcnylsrii~pi~SRC~KfrFk~ 187 (346)
T KOG0989|consen 129 PFKIIILDECDSMTSDAQ-AALRRTMEDF-------------SRTTRFILICNYLSRIIRPLVSRCQKFRFKK 187 (346)
T ss_pred cceEEEEechhhhhHHHH-HHHHHHHhcc-------------ccceEEEEEcCChhhCChHHHhhHHHhcCCC
Confidence 348999994 22 2224 3455555542 4578999999999999999999999877765
No 262
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.42 E-value=0.16 Score=63.99 Aligned_cols=44 Identities=9% Similarity=0.227 Sum_probs=35.4
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
.+.||.+++.+ ..|++-+.+|...+.+.+++.+++......++.
T Consensus 147 ~t~FIL~ttd~-~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~ 190 (535)
T PRK08451 147 YVKFILATTDP-LKLPATILSRTQHFRFKQIPQNSIISHLKTILE 190 (535)
T ss_pred ceEEEEEECCh-hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHH
Confidence 35566666555 778899999999999999999998888777654
No 263
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.40 E-value=0.024 Score=63.51 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=21.0
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+|+|||||||||..+.|++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998764
No 264
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.40 E-value=0.09 Score=59.08 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=26.0
Q ss_pred CCccceeccCCCccchHhHHHHHhccCcCcc
Q psy4730 728 NDVPMMFVGPTGTGKSTIVLNLLLNLSKDKY 758 (1513)
Q Consensus 728 ~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~ 758 (1513)
...+|||.|+.|||||++|+.++.....+..
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~~GL 81 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYADQGL 81 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhhcCc
Confidence 4568999999999999999999987655543
No 265
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.40 E-value=0.13 Score=67.49 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730 714 VTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
...+.......+...+.|||+.|++||||+++++..-...
T Consensus 333 ~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 333 QMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred HHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 3445556677778899999999999999999999886654
No 266
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.38 E-value=0.049 Score=61.96 Aligned_cols=129 Identities=14% Similarity=0.065 Sum_probs=84.4
Q ss_pred HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccc---------ccceeEEEecCCCCChhhccccccCCCCCCc
Q psy4730 1348 ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMK---------EFKTGYKIINPKSITMGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~---------~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~ 1418 (1513)
....|+.+++||.|+||..+...+|+++.=.. ...+++. ....+++.+.|..-+
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~-~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~---------------- 66 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTK-ANGFCKTCESCLKILNGKYNDFYLIFDQKNP---------------- 66 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCC-CCCCCCCCHHHHHHhcCCCCCEEEecCCccc----------------
Confidence 34579999999999999999999998874221 1112221 234556666665421
Q ss_pred cCHHHHHHHHh----hccC--CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730 1419 DGILAKTFREM----AVST--TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus 1419 DG~l~~~lR~~----~~~~--~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
+-..-+|+. .... ....+.+|+|+ +|-.=.++-|++| |.| | ..|+++-+|+-+++....-|
T Consensus 67 --I~id~ir~l~~~l~~~s~e~~~~KV~II~~-ae~m~~~AaNaLL---K~L-----E--EPp~~t~fiLit~~~~~lLp 133 (261)
T PRK05818 67 --IKKEDALSIINKLNRPSVESNGKKIYIIYG-IEKLNKQSANSLL---KLI-----E--EPPKNTYGIFTTRNENNILN 133 (261)
T ss_pred --CCHHHHHHHHHHHccCchhcCCCEEEEecc-HhhhCHHHHHHHH---Hhh-----c--CCCCCeEEEEEECChHhCch
Confidence 113333443 2222 23578888886 3333346667776 111 1 14889999999999999999
Q ss_pred chhhccEEEEeeCC
Q psy4730 1493 ATVSRVGMIYFELK 1506 (1513)
Q Consensus 1493 atvsRcg~v~~~~~ 1506 (1513)
.-+|||-.+.+.+.
T Consensus 134 TI~SRCq~~~~~~~ 147 (261)
T PRK05818 134 TILSRCVQYVVLSK 147 (261)
T ss_pred HhhhheeeeecCCh
Confidence 99999999988653
No 267
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.38 E-value=0.11 Score=66.24 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=33.6
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
.+.||.+++.+++ +++.+++|...+.+..++.+.+......++.
T Consensus 149 ~~~fIL~t~d~~k-il~tI~SRc~~~~f~~l~~~~i~~~L~~il~ 192 (527)
T PRK14969 149 HVKFILATTDPQK-IPVTVLSRCLQFNLKQMPPPLIVSHLQHILE 192 (527)
T ss_pred CEEEEEEeCChhh-CchhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4566766655543 4555999999999999999998887777764
No 268
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.36 E-value=0.037 Score=62.52 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=55.6
Q ss_pred HHHhhccCCCCCccCCCCChHHHHHHHHhcCCcc-----ccC-CceeeeecceEEEEeecCCCCCCChhhhccceE-eec
Q psy4730 888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLY-----DFQ-TVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISI 960 (1513)
Q Consensus 888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y-----d~~-~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~ 960 (1513)
.+|+|+++--. ..+-|.|--.+|..-.- .++ ..-.+.+--+++|||+--. ..++.-|..||-+ ..+
T Consensus 106 VLFIDEIHrl~------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~-G~lt~PLrdRFGi~~rl 178 (332)
T COG2255 106 VLFIDEIHRLS------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA-GMLTNPLRDRFGIIQRL 178 (332)
T ss_pred eEEEehhhhcC------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc-ccccchhHHhcCCeeee
Confidence 45679998222 13568888777753221 222 3345666688888876533 3477778889987 679
Q ss_pred CCCChHHHHHHHHHHh
Q psy4730 961 DSFNEATLSKIFTSVL 976 (1513)
Q Consensus 961 ~~~~~~~l~~i~~~~l 976 (1513)
++.+.++|..|....-
T Consensus 179 efY~~~eL~~Iv~r~a 194 (332)
T COG2255 179 EFYTVEELEEIVKRSA 194 (332)
T ss_pred ecCCHHHHHHHHHHHH
Confidence 9999999999988643
No 269
>PRK06893 DNA replication initiation factor; Validated
Probab=95.35 E-value=0.039 Score=62.60 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=22.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
++.++|+||||||||.+.++++..+..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345799999999999999999987643
No 270
>PF13173 AAA_14: AAA domain
Probab=95.33 E-value=0.031 Score=57.25 Aligned_cols=85 Identities=26% Similarity=0.343 Sum_probs=51.8
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
+..++|.||.||||||+++-+++.+. . +.++..+|-...... +..+ .| +...+++..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~----------~~~~~yi~~~~~~~~---~~~~------~~--~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--P----------PENILYINFDDPRDR---RLAD------PD--LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--c----------cccceeeccCCHHHH---HHhh------hh--hHHHHHHhh
Confidence 56899999999999999998886654 0 012333332222111 1001 01 334444431
Q ss_pred ccCCCCceEEEEcC-CCChHHHHhhhcccCCC
Q psy4730 1431 VSTTPDRKWIMFDG-PIDAVWIENMNTVLDDN 1461 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG-~~d~~wiE~LNsvLDdn 1461 (1513)
.....+|++|. .--|.|.+.++.+.|+.
T Consensus 59 ---~~~~~~i~iDEiq~~~~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 59 ---KPGKKYIFIDEIQYLPDWEDALKFLVDNG 87 (128)
T ss_pred ---ccCCcEEEEehhhhhccHHHHHHHHHHhc
Confidence 12568999993 34478999999999854
No 271
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.32 E-value=0.036 Score=68.01 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..||+|+||||||||++.+.++..++
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhC
Confidence 46899999999999999999987764
No 272
>PRK06217 hypothetical protein; Validated
Probab=95.32 E-value=0.015 Score=63.55 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.8
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|.|.|||||||+.+.|++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 389999999999999999998775
No 273
>PRK07261 topology modulation protein; Provisional
Probab=95.30 E-value=0.026 Score=61.01 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+|+|+|||||||+.+.|++.++
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987653
No 274
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.30 E-value=0.054 Score=64.87 Aligned_cols=124 Identities=15% Similarity=0.226 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccc
Q psy4730 1335 DWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEF 1410 (1513)
Q Consensus 1335 ~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~ 1410 (1513)
+.+..-+-++..+.....+|+|+|++||||+++.+.+...-.+ ....+..+|+..++ -.+|||.-
T Consensus 13 ~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-----------~~~pfv~v~c~~~~~~~~~~~lfg~~ 81 (326)
T PRK11608 13 NSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR-----------WQGPFISLNCAALNENLLDSELFGHE 81 (326)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-----------cCCCeEEEeCCCCCHHHHHHHHcccc
Confidence 3444444556666778889999999999999999988754321 01356788988887 45788843
Q ss_pred cCCCCCCc------cCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730 1411 DSASHEWR------DGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus 1411 ~~~t~eW~------DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
. ..|. -|.+ ..+ ..-=+++| +.+++..-+.|-.+|++.....+ |..-..+.++|+|+
T Consensus 82 ~---~~~~g~~~~~~g~l----~~a------~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~--g~~~~~~~~~RiI~ 146 (326)
T PRK11608 82 A---GAFTGAQKRHPGRF----ERA------DGGTLFLDELATAPMLVQEKLLRVIEYGELERV--GGSQPLQVNVRLVC 146 (326)
T ss_pred c---cccCCcccccCCch----hcc------CCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeC--CCCceeeccEEEEE
Confidence 1 1111 2333 111 11347778 56788888899999988764444 33335566899999
Q ss_pred ee
Q psy4730 1483 EC 1484 (1513)
Q Consensus 1483 E~ 1484 (1513)
-+
T Consensus 147 ~s 148 (326)
T PRK11608 147 AT 148 (326)
T ss_pred eC
Confidence 65
No 275
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.29 E-value=0.15 Score=64.36 Aligned_cols=45 Identities=13% Similarity=0.261 Sum_probs=35.2
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.+|.+++. ...+++.+.+|+..+.+.+|+.+++......++..
T Consensus 146 ~t~~Il~t~~-~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 146 HVIFILATTE-PEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred CEEEEEEcCC-hhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHH
Confidence 3455555543 35788899999999999999999999888887653
No 276
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.22 E-value=0.05 Score=69.27 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=79.1
Q ss_pred HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCC---C
Q psy4730 1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSAS---H 1415 (1513)
Q Consensus 1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t---~ 1415 (1513)
++-.+.....+|+|.|++||||+++.+.+.....+- ...+..+|+.+++ -.+|||.-...- .
T Consensus 202 ~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-----------~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~ 270 (509)
T PRK05022 202 EIEVVAASDLNVLILGETGVGKELVARAIHAASPRA-----------DKPLVYLNCAALPESLAESELFGHVKGAFTGAI 270 (509)
T ss_pred HHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC-----------CCCeEEEEcccCChHHHHHHhcCccccccCCCc
Confidence 344455677899999999999999999997654321 2356788988886 357899532110 0
Q ss_pred CCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730 1416 EWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus 1416 eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
.-.-|.+. .+ ..-.+++| +.+++..-..|-.+|++...-.+.+.. ..+.++|+|+-+
T Consensus 271 ~~~~g~~~----~a------~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~RiI~~t 329 (509)
T PRK05022 271 SNRSGKFE----LA------DGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDR--SLRVDVRVIAAT 329 (509)
T ss_pred ccCCcchh----hc------CCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCc--ceecceEEEEec
Confidence 11233332 11 22568899 678888888898999877654443333 445678999977
No 277
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.21 E-value=0.53 Score=60.16 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=40.0
Q ss_pred CccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeecccccc
Q psy4730 705 PSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSART 769 (1513)
Q Consensus 705 ~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t 769 (1513)
|.+++-......+....++.+-..+.|||+.|++||||+++++.+-.......--...++++...
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 33444333334445556666777899999999999999999998644332211112345555443
No 278
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.20 E-value=0.14 Score=66.43 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=33.9
Q ss_pred eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730 934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
+.||.++.. ...|++.+++|+..+.+.+|+.+.+......++.
T Consensus 149 tifILaTte-~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 149 VIFILATTE-VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILE 191 (725)
T ss_pred eEEEEEcCC-hhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHH
Confidence 455555533 3478889999999999999999999988887654
No 279
>KOG0991|consensus
Probab=95.20 E-value=0.037 Score=60.38 Aligned_cols=30 Identities=40% Similarity=0.638 Sum_probs=24.6
Q ss_pred cceeccCCCccchHhHHHHHhccCcCcccc
Q psy4730 731 PMMFVGPTGTGKSTIVLNLLLNLSKDKYLP 760 (1513)
Q Consensus 731 ~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~ 760 (1513)
++++.||||+|||+.+..+++.+-.+.|..
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke 79 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSYKE 79 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhhhh
Confidence 566899999999999999998876655543
No 280
>PRK08181 transposase; Validated
Probab=95.20 E-value=0.046 Score=63.26 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=25.5
Q ss_pred HHhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730 724 LYLQNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 724 ~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
.++..+.+++|+||+|||||.+...+...+
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHHHH
Confidence 467788999999999999999999876543
No 281
>PRK09862 putative ATP-dependent protease; Provisional
Probab=95.17 E-value=0.046 Score=68.48 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=94.4
Q ss_pred HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccc-------------ccccceeEEEecCCCCChhhccccccCCC
Q psy4730 1348 ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSAT-------------MKEFKTGYKIINPKSITMGQLYGEFDSAS 1414 (1513)
Q Consensus 1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~-------------~~~~~~~~~~inp~~~t~~eL~G~~~~~t 1414 (1513)
....|.++|+||+|||||++.+.+...+....+....+ .......-++--+++.|...|+|.-
T Consensus 207 a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg---- 282 (506)
T PRK09862 207 AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGG---- 282 (506)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCC----
Confidence 34578899999999999999999986654332211000 0000112344455666777788841
Q ss_pred CCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC-----
Q psy4730 1415 HEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL----- 1487 (1513)
Q Consensus 1415 ~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l----- 1487 (1513)
....-|.++.+ +.-.+++| ...++..++.|..+|++...-.-..|..+..|.++++|--+..-
T Consensus 283 ~~~~pG~l~~A----------~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 283 AIPGPGEISLA----------HNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred ceehhhHhhhc----------cCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 12344555432 23678889 45688899999999988876555667778889999888776432
Q ss_pred ----------------CCCCcchhhccEE-EEeeC
Q psy4730 1488 ----------------EFASPATVSRVGM-IYFEL 1505 (1513)
Q Consensus 1488 ----------------~~asPatvsRcg~-v~~~~ 1505 (1513)
...|++...|+.| |.+++
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~ 387 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPL 387 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCC
Confidence 2467788889888 34443
No 282
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=95.16 E-value=0.036 Score=68.07 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=89.2
Q ss_pred HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCc
Q psy4730 1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWR 1418 (1513)
Q Consensus 1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~ 1418 (1513)
.....-.+...|+|+|+||+||.-+.+....+-.+ . ...+..||+.|++ -+||||+-
T Consensus 260 ~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R----~-------~~PFIaiNCaAiPe~LlESELFGye-------- 320 (560)
T COG3829 260 LAKRIAKTDSTVLILGESGTGKELFARAIHNLSPR----A-------NGPFIAINCAAIPETLLESELFGYE-------- 320 (560)
T ss_pred HHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcc----c-------CCCeEEEecccCCHHHHHHHHhCcC--------
Confidence 34444556779999999999998877776554433 1 2457889999999 68999963
Q ss_pred cCHHHHHHHHhhcc--CCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730 1419 DGILAKTFREMAVS--TTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus 1419 DG~l~~~lR~~~~~--~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
.|.||=+.|.+... +....-=|.+| |.++..-=--|=+||-+....-+.+.+-++. .+|+|-.|
T Consensus 321 ~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~v--DVRIIAAT 388 (560)
T COG3829 321 KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPV--DVRIIAAT 388 (560)
T ss_pred CccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceee--EEEEEecc
Confidence 57888887754221 12233567889 8898887888899999999999977776665 48888766
No 283
>PRK14527 adenylate kinase; Provisional
Probab=95.16 E-value=0.034 Score=61.20 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.3
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+++|||||||||..+.|++.++
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999987765
No 284
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.15 E-value=0.12 Score=62.66 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=34.6
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.+|.+++.+ ..+.+.+.+|+..+.+.+|+.+.+..+...++..
T Consensus 147 ~~~lIl~~~~~-~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 147 HVVFILATTEP-HKIPATILSRCQRFDFKRIPLEDIVERLKKILDK 191 (355)
T ss_pred ceeEEEEeCCH-HHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH
Confidence 45555555443 3567889999999999999999999888887654
No 285
>KOG0731|consensus
Probab=95.11 E-value=0.043 Score=70.39 Aligned_cols=38 Identities=29% Similarity=0.286 Sum_probs=31.2
Q ss_pred cCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC
Q psy4730 661 LGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT 698 (1513)
Q Consensus 661 ~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~ 698 (1513)
.|..+.||+|||||-++|+.|.-.|.|++..+-|+-++
T Consensus 345 kGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 345 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 45677899999999999999999999977777665544
No 286
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.11 E-value=0.058 Score=68.81 Aligned_cols=118 Identities=16% Similarity=0.222 Sum_probs=76.7
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCCh----hhccccccC---CCCC
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITM----GQLYGEFDS---ASHE 1416 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~----~eL~G~~~~---~t~e 1416 (1513)
+..+.....+|+|.|++||||+.+.+.+..+..+ ....+..+|+.+++- .+|||+-.. ...+
T Consensus 220 ~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r-----------~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~ 288 (520)
T PRK10820 220 ARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR-----------GKKPFLALNCASIPDDVVESELFGHAPGAYPNALE 288 (520)
T ss_pred HHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-----------CCCCeEEeccccCCHHHHHHHhcCCCCCCcCCccc
Confidence 3344556789999999999999999987654321 013467899988873 578985421 1123
Q ss_pred CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730 1417 WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus 1417 W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
...|+|..+ ..-=+++| +.+++.--..|-.+|.+...-.+ |+.-..+.++|+|+-+
T Consensus 289 ~~~g~~e~a----------~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~vRiI~st 346 (520)
T PRK10820 289 GKKGFFEQA----------NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRV--GEDHEVHVDVRVICAT 346 (520)
T ss_pred CCCChhhhc----------CCCEEEEeChhhCCHHHHHHHHHHHhcCCcccC--CCCcceeeeeEEEEec
Confidence 456665421 11347888 56778777788888877654333 4444446678999865
No 287
>PRK08233 hypothetical protein; Provisional
Probab=95.10 E-value=0.021 Score=62.12 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.8
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|.|.|+|||||||+.+.|++.+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3577889999999999999998875
No 288
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=95.01 E-value=0.099 Score=67.81 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=38.5
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.+++|+......+++.+.+||..+.+++++.+++..|+...+..
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred eEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 5777777766555789999999999999999999999999987653
No 289
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.00 E-value=1 Score=60.09 Aligned_cols=45 Identities=7% Similarity=0.093 Sum_probs=34.5
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.+++.+. .|.+-+.+|..++.+..++.++|......++..
T Consensus 150 ~~~fIl~tt~~~-kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 150 HLKFIFATTEPD-KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CeEEEEEeCChh-hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 455666664432 377889999999999999999999888887643
No 290
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.021 Score=61.37 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=23.3
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
-|++.|+|||||||..+-|++++..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 4899999999999999999999985
No 291
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.98 E-value=0.049 Score=60.03 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.4
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|.|.|++||||||..+.|++.++.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999875
No 292
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.91 E-value=0.039 Score=62.02 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.5
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+|.|+|||||||+.+.|++.++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998876
No 293
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.90 E-value=0.014 Score=59.60 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.1
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.+.++|+|||||||||+.+.++..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 468999999999999999999988764
No 294
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=94.90 E-value=0.15 Score=65.93 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=56.0
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCc-cccCCceeeeecceEEEEeecCCC--CCCChhhhccceE-eecCCCC
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPTM--NTITGRLLRHMNI-ISIDSFN 964 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~~--~~~~~r~~~~f~~-~~~~~~~ 964 (1513)
+|+|++|.-..+ ....|.+.++.|.. +++.......-.++.+||++||.. ..+++.++.||.+ +.+.++.
T Consensus 88 L~lDEi~rl~~~------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~ 161 (589)
T TIGR02031 88 LYVDMANLLDDG------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVA 161 (589)
T ss_pred EeccchhhCCHH------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCC
Confidence 457999955533 67788888887764 455445555556899999999973 6899999999998 4555544
Q ss_pred hH-HHHHHHHHHh
Q psy4730 965 EA-TLSKIFTSVL 976 (1513)
Q Consensus 965 ~~-~l~~i~~~~l 976 (1513)
.. .-..|....+
T Consensus 162 ~~~er~eil~~~~ 174 (589)
T TIGR02031 162 SQDLRVEIVRRER 174 (589)
T ss_pred CHHHHHHHHHHHH
Confidence 33 3345555443
No 295
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.90 E-value=0.15 Score=64.82 Aligned_cols=45 Identities=13% Similarity=0.301 Sum_probs=35.3
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.+|.+++. ...+.+.+++|+..+.+.+|+.+.+...+..++..
T Consensus 149 ~tvfIL~Tt~-~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k 193 (605)
T PRK05896 149 HVVFIFATTE-FQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKK 193 (605)
T ss_pred cEEEEEECCC-hHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH
Confidence 3455555543 36788899999999999999999999888887653
No 296
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.86 E-value=0.26 Score=61.92 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.0
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..+||+|+||||||||.+.+++|...+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~ 284 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQ 284 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 457999999999999999999988764
No 297
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.85 E-value=0.12 Score=66.38 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=34.8
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.++..+ +.+++-+.+|+..+.+..|+.+++......++..
T Consensus 149 ~~ifIlatt~~-~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~ 193 (559)
T PRK05563 149 HVIFILATTEP-HKIPATILSRCQRFDFKRISVEDIVERLKYILDK 193 (559)
T ss_pred CeEEEEEeCCh-hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHH
Confidence 34555555433 5688889999999999999999999888887653
No 298
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.84 E-value=0.071 Score=63.75 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=27.4
Q ss_pred HHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1345 YEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1345 ~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..++..+..|+++|+|||||||+++.|...+.
T Consensus 154 ~~~v~~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 154 EHAVISKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHHcCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 34567788999999999999999999987764
No 299
>KOG0741|consensus
Probab=94.82 E-value=0.053 Score=65.54 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHhcc--eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1316 DELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRH--GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1316 ~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~--gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.++.+.++.++..+-+.| +++ +.+...| |++|.||||+|||-+.+-+-+.++.
T Consensus 228 ~EFs~IFRRAFAsRvFpp--~vi-------e~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNA 282 (744)
T KOG0741|consen 228 KEFSDIFRRAFASRVFPP--EVI-------EQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNA 282 (744)
T ss_pred HHHHHHHHHHHHhhcCCH--HHH-------HHcCccceeeEEEECCCCCChhHHHHHHHHHhcC
Confidence 345555555555554433 222 2233344 9999999999999999988877763
No 300
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.80 E-value=0.076 Score=64.97 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.5
Q ss_pred ccceeccCCCccchHhHHHHHhcc
Q psy4730 730 VPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 730 ~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
.++||+||||||||++++.+...+
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 479999999999999999998655
No 301
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.77 E-value=0.086 Score=68.16 Aligned_cols=86 Identities=17% Similarity=0.119 Sum_probs=49.3
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC---------hhhccccccCCCCCCccCHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT---------MGQLYGEFDSASHEWRDGILA 1423 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t---------~~eL~G~~~~~t~eW~DG~l~ 1423 (1513)
.++|.|+||+|||++++.+.+.+..-.... ....+.+..||+..+. ..+|+|.. |.++.-...+|.
T Consensus 783 vLYIyG~PGTGKTATVK~VLrELqeeaeqk----~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~-P~~GlsS~evLe 857 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVIQLLQHKTKQK----LLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKK-PPNALNSFKILD 857 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHHhhc----cCCCceEEEEeCCccCCHHHHHHHHHHHHcCCC-CCccccHHHHHH
Confidence 356999999999999999987775432211 1112567788886544 23454533 332222333555
Q ss_pred HHHHHhhccCCCCceEEEEcC
Q psy4730 1424 KTFREMAVSTTPDRKWIMFDG 1444 (1513)
Q Consensus 1424 ~~lR~~~~~~~~~~~WivfDG 1444 (1513)
.+++.... .......||+|.
T Consensus 858 rLF~~L~k-~~r~v~IIILDE 877 (1164)
T PTZ00112 858 RLFNQNKK-DNRNVSILIIDE 877 (1164)
T ss_pred HHHhhhhc-ccccceEEEeeh
Confidence 55544311 122345899995
No 302
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.76 E-value=0.34 Score=54.88 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=26.2
Q ss_pred HHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730 723 NLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS 754 (1513)
Q Consensus 723 ~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~ 754 (1513)
+.++...-.+.++|++|||||+++.+++..+.
T Consensus 7 ~~l~~~~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 7 NSLLKDPFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred hHhcCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 44555666789999999999999999997654
No 303
>PRK14529 adenylate kinase; Provisional
Probab=94.76 E-value=0.038 Score=62.03 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=22.1
Q ss_pred EEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
|+|+|||||||||..+.|++.++-
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 889999999999999999988863
No 304
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.73 E-value=0.055 Score=65.28 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhcccccc
Q psy4730 1336 WYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFD 1411 (1513)
Q Consensus 1336 ~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~ 1411 (1513)
.+..-+-|+-..--...+|++.|+||+||+.+.+.+...-.+. . .-....+|+.+++ ..+|||+--
T Consensus 86 ~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~---~-------~~PFI~~NCa~~~en~~~~eLFG~~k 155 (403)
T COG1221 86 SLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR---A-------EAPFIAFNCAAYSENLQEAELFGHEK 155 (403)
T ss_pred HHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc---c-------CCCEEEEEHHHhCcCHHHHHHhcccc
Confidence 3444444444445567799999999999999999988332221 1 1345778888887 556888421
Q ss_pred C---CCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec-
Q psy4730 1412 S---ASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE- 1485 (1513)
Q Consensus 1412 ~---~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~- 1485 (1513)
- -..+=+-|+|-+ ...--+.+| |.+.++--|.|=++||+.-.-.+. +.=..+.++|+++.|.
T Consensus 156 GaftGa~~~k~Glfe~----------A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG--~~~~~~~dVRli~AT~~ 223 (403)
T COG1221 156 GAFTGAQGGKAGLFEQ----------ANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVG--GSQPRPVDVRLICATTE 223 (403)
T ss_pred ceeecccCCcCchhee----------cCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecC--CCCCcCCCceeeecccc
Confidence 0 011222233322 123567788 888999999999999998766674 3667789999999984
Q ss_pred CCCCCCcc--hhhc-cEEEE
Q psy4730 1486 NLEFASPA--TVSR-VGMIY 1502 (1513)
Q Consensus 1486 ~l~~asPa--tvsR-cg~v~ 1502 (1513)
|+..+--+ +..| +..+.
T Consensus 224 ~l~~~~~~g~dl~~rl~~~~ 243 (403)
T COG1221 224 DLEEAVLAGADLTRRLNILT 243 (403)
T ss_pred CHHHHHHhhcchhhhhcCce
Confidence 44333333 5555 55443
No 305
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.71 E-value=0.017 Score=60.14 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+++|+|||||||+++.|++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 79999999999999999987654
No 306
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.69 E-value=0.19 Score=58.14 Aligned_cols=72 Identities=14% Similarity=0.095 Sum_probs=50.7
Q ss_pred ecceEEEEeecCCC------CCCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q psy4730 931 LVDIIYITAMIPTM------NTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYS 1004 (1513)
Q Consensus 931 ~~~~~~~~a~~~~~------~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 1004 (1513)
-.++.++.+|.|.. -.--|.++++.++..+.+=+.++|..+-..++...-. .+ .++.+++++.+..+|.
T Consensus 159 r~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~~~~--~~---~~~~~~l~~~~~~iH~ 233 (268)
T PF12780_consen 159 RKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSDIEL--LS---EELKKSLAEIMVFIHQ 233 (268)
T ss_dssp CCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCHHHT--SS-----HHHHHHHHHHHHHH
T ss_pred HhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHhhcc--cc---hhHHHHHHHHHHHHhc
Confidence 35889999999972 2456889999999999999999999999988765421 11 2345567777777776
Q ss_pred hhh
Q psy4730 1005 EST 1007 (1513)
Q Consensus 1005 ~~~ 1007 (1513)
.+.
T Consensus 234 sv~ 236 (268)
T PF12780_consen 234 SVE 236 (268)
T ss_dssp HHH
T ss_pred cch
Confidence 543
No 307
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.68 E-value=0.12 Score=62.54 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.0
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
+--|++.|||||||||+++.|...+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34678999999999999999987664
No 308
>KOG0737|consensus
Probab=94.64 E-value=0.037 Score=64.79 Aligned_cols=59 Identities=32% Similarity=0.322 Sum_probs=42.8
Q ss_pred eeecccchHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC
Q psy4730 640 LVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT 698 (1513)
Q Consensus 640 lV~Tplt~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~ 698 (1513)
+|+-|+-.+-+.....-+....|..+.||+|||||-+.|++|+..|-..+-+.-+.-++
T Consensus 107 ~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 107 LVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred HHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 45556555444433333334567888999999999999999999999887777776555
No 309
>KOG0745|consensus
Probab=94.62 E-value=0.026 Score=66.78 Aligned_cols=87 Identities=23% Similarity=0.357 Sum_probs=60.4
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
..-|+|+||||||||-+.++||+.++ |.+.+-++-.+|..-+.|. =.+.++.+++.++.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ld--------------VPfaIcDcTtLTQAGYVGe-------DVEsvi~KLl~~A~ 284 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLD--------------VPFAICDCTTLTQAGYVGE-------DVESVIQKLLQEAE 284 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhC--------------CCeEEecccchhhcccccc-------cHHHHHHHHHHHcc
Confidence 35899999999999999999999986 6777778888887766663 35678888888764
Q ss_pred ccCCC-CceEEEEcCCCChH--HHHhhhcccC
Q psy4730 1431 VSTTP-DRKWIMFDGPIDAV--WIENMNTVLD 1459 (1513)
Q Consensus 1431 ~~~~~-~~~WivfDG~~d~~--wiE~LNsvLD 1459 (1513)
.+-.. .+-.+.+|. +|-. -.|.+|..-|
T Consensus 285 ~nVekAQqGIVflDE-vDKi~~~~~~i~~~RD 315 (564)
T KOG0745|consen 285 YNVEKAQQGIVFLDE-VDKITKKAESIHTSRD 315 (564)
T ss_pred CCHHHHhcCeEEEeh-hhhhcccCcccccccc
Confidence 43222 334555663 3322 1455665533
No 310
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=94.62 E-value=0.098 Score=64.30 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=83.8
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCcc
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWRD 1419 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~D 1419 (1513)
+.+.-.+.-+|+|.|+|||||-.+.+.+...-.+- ...+..||+.+++ -+||||+= .
T Consensus 157 i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~-----------~~PFVavNcaAip~~l~ESELFGhe---k----- 217 (464)
T COG2204 157 IAKVAPSDASVLITGESGTGKELVARAIHQASPRA-----------KGPFIAVNCAAIPENLLESELFGHE---K----- 217 (464)
T ss_pred HHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCccc-----------CCCceeeecccCCHHHHHHHhhccc---c-----
Confidence 34445677899999999999999998887665542 2356889999999 56899952 2
Q ss_pred CHHHHHHHH-hhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730 1420 GILAKTFRE-MAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus 1420 G~l~~~lR~-~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
|.||-+.++ ...-+....-=+.+| |+++...=-.|=+||.+...-.+.+.+.|++ ++|+|--|
T Consensus 218 GAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~v--dvRiIaaT 283 (464)
T COG2204 218 GAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKV--DVRIIAAT 283 (464)
T ss_pred cCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccce--eeEEEeec
Confidence 333333221 111111223457789 8888888889999999888888866666654 58888766
No 311
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.62 E-value=0.11 Score=66.75 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=75.1
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCC---
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHE--- 1416 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~e--- 1416 (1513)
+..+.....+|+|.||+||||+++.+.+.....+- .-.+..||+.+++ -.+|||.-...-.+
T Consensus 212 ~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~-----------~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~ 280 (534)
T TIGR01817 212 ARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA-----------KRPFVKVNCAALSETLLESELFGHEKGAFTGAIA 280 (534)
T ss_pred HHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC-----------CCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCc
Confidence 34445567799999999999999999998654321 1357888988887 46788854211000
Q ss_pred CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730 1417 WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus 1417 W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
..-|.+.. ...-=+++| +.+++..-..|-.+|++...-.+.++ -..+.++|+|+-+
T Consensus 281 ~~~g~~~~----------a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~s 338 (534)
T TIGR01817 281 QRKGRFEL----------ADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGN--RTLKVDVRLVAAT 338 (534)
T ss_pred CCCCcccc----------cCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCC--ceEeecEEEEEeC
Confidence 11222211 112457888 56778778888888887654444332 2455678999866
No 312
>PRK06526 transposase; Provisional
Probab=94.59 E-value=0.035 Score=63.86 Aligned_cols=86 Identities=14% Similarity=0.197 Sum_probs=53.1
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
.+++++|+||||+|||.+...++...-.-+ . .| ++ .+..+++..+.. .+.+|-+...+++.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g-~--------~v----~f---~t~~~l~~~l~~---~~~~~~~~~~l~~l 157 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG-H--------RV----LF---ATAAQWVARLAA---AHHAGRLQAELVKL 157 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC-C--------ch----hh---hhHHHHHHHHHH---HHhcCcHHHHHHHh
Confidence 467999999999999999999976554311 0 11 11 334444443321 13455555566554
Q ss_pred hccCCCCceEEEEc--C--CCChHHHHhhhcccC
Q psy4730 1430 AVSTTPDRKWIMFD--G--PIDAVWIENMNTVLD 1459 (1513)
Q Consensus 1430 ~~~~~~~~~WivfD--G--~~d~~wiE~LNsvLD 1459 (1513)
. ....+|+| | +.++.+.+-|..+++
T Consensus 158 ~-----~~dlLIIDD~g~~~~~~~~~~~L~~li~ 186 (254)
T PRK06526 158 G-----RYPLLIVDEVGYIPFEPEAANLFFQLVS 186 (254)
T ss_pred c-----cCCEEEEcccccCCCCHHHHHHHHHHHH
Confidence 2 24789999 4 346777777777775
No 313
>PRK08116 hypothetical protein; Validated
Probab=94.58 E-value=0.046 Score=63.52 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=22.7
Q ss_pred CCccceeccCCCccchHhHHHHHhccC
Q psy4730 728 NDVPMMFVGPTGTGKSTIVLNLLLNLS 754 (1513)
Q Consensus 728 ~~~~~ll~G~~g~GKt~~v~~~~~~~~ 754 (1513)
.+.+++|.|++|||||.++....+.+.
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999998877653
No 314
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=94.55 E-value=0.37 Score=57.88 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=49.2
Q ss_pred HhhccCCCCCccCCCCChHHHHHHHHhcC-CccccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCChHH
Q psy4730 890 ILDDLNMPQKETYGAQPAVELLRQIIDHK-HLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEAT 967 (1513)
Q Consensus 890 ~~dd~n~p~~~~~~~q~~le~lr~~~~~~-~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~~ 967 (1513)
++|++|+-.-. ....|=.....| ---.+.......--++.+||+|||-+-.|-|-|+-||-+ +.+.+|...+
T Consensus 149 YvDEvnlL~d~------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~ 222 (423)
T COG1239 149 YVDEVNLLDDH------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLE 222 (423)
T ss_pred EEeccccccHH------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHH
Confidence 44888844311 223333333333 234444555555559999999999999999999999988 7888887775
Q ss_pred HHH
Q psy4730 968 LSK 970 (1513)
Q Consensus 968 l~~ 970 (1513)
..-
T Consensus 223 ~rv 225 (423)
T COG1239 223 ERV 225 (423)
T ss_pred HHH
Confidence 543
No 315
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.23 Score=62.83 Aligned_cols=128 Identities=18% Similarity=0.240 Sum_probs=74.5
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
-+.||||||.||||+-+..|+|+++ .+.++.-.-+. -.|.=|.-. .==+---|-+.+.|+++..
T Consensus 352 ILcLVGPPGVGKTSLgkSIA~al~R--------------kfvR~sLGGvrDEAEIRGHRR-TYIGamPGrIiQ~mkka~~ 416 (782)
T COG0466 352 ILCLVGPPGVGKTSLGKSIAKALGR--------------KFVRISLGGVRDEAEIRGHRR-TYIGAMPGKIIQGMKKAGV 416 (782)
T ss_pred EEEEECCCCCCchhHHHHHHHHhCC--------------CEEEEecCccccHHHhccccc-cccccCChHHHHHHHHhCC
Confidence 4568999999999999999999986 34444332222 222222100 0001334777788887732
Q ss_pred cCCCCceEEEEc----------CCCChHHHHhhhcccCCCCceeecC---CCeeecCCCCeEEEeecCCCCCCcchhhcc
Q psy4730 1432 STTPDRKWIMFD----------GPIDAVWIENMNTVLDDNKKLCLIN---GEIIKMSNTMNLIFECENLEFASPATVSRV 1498 (1513)
Q Consensus 1432 ~~~~~~~WivfD----------G~~d~~wiE~LNsvLDdn~~L~L~n---Ge~i~~~~~~~~iFE~~~l~~asPatvsRc 1498 (1513)
..=-|++| | || .-+|--|||+..--+..+ ...+-+. ++-|+--..++..+.++..-|+
T Consensus 417 ----~NPv~LLDEIDKm~ss~rG--DP--aSALLEVLDPEQN~~F~DhYLev~yDLS-~VmFiaTANsl~tIP~PLlDRM 487 (782)
T COG0466 417 ----KNPVFLLDEIDKMGSSFRG--DP--ASALLEVLDPEQNNTFSDHYLEVPYDLS-KVMFIATANSLDTIPAPLLDRM 487 (782)
T ss_pred ----cCCeEEeechhhccCCCCC--Ch--HHHHHhhcCHhhcCchhhccccCccchh-heEEEeecCccccCChHHhcce
Confidence 23456777 4 44 245566777643322221 1112222 3444555566777889999999
Q ss_pred EEEEee
Q psy4730 1499 GMIYFE 1504 (1513)
Q Consensus 1499 g~v~~~ 1504 (1513)
-+|.++
T Consensus 488 EiI~ls 493 (782)
T COG0466 488 EVIRLS 493 (782)
T ss_pred eeeeec
Confidence 998765
No 316
>KOG1051|consensus
Probab=94.47 E-value=0.078 Score=69.56 Aligned_cols=107 Identities=15% Similarity=0.254 Sum_probs=72.0
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhccccccCCCCCCccC-HHHHHHHHhh
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYGEFDSASHEWRDG-ILAKTFREMA 1430 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~G~~~~~t~eW~DG-~l~~~lR~~~ 1430 (1513)
-.|++||+|+|||-+.++||+.+-. . ...+.+|+-++.. ...+.|. +|-=.++..| -|+.++|+--
T Consensus 593 wflflGpdgvGKt~lAkaLA~~~Fg--s---------e~~~IriDmse~~evskligs-p~gyvG~e~gg~LteavrrrP 660 (898)
T KOG1051|consen 593 WFLFLGPDGVGKTELAKALAEYVFG--S---------EENFIRLDMSEFQEVSKLIGS-PPGYVGKEEGGQLTEAVKRRP 660 (898)
T ss_pred EEEEECCCchhHHHHHHHHHHHHcC--C---------ccceEEechhhhhhhhhccCC-CcccccchhHHHHHHHHhcCC
Confidence 6899999999999999999988732 1 2445666655422 3345553 1111345555 8899998752
Q ss_pred ccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCC
Q psy4730 1431 VSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTM 1478 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~ 1478 (1513)
..=|+||. -.|+...=.|--+||+. .+|=+-|..|.+.+.+
T Consensus 661 ------~sVVLfdeIEkAh~~v~n~llq~lD~G-rltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 661 ------YSVVLFEEIEKAHPDVLNILLQLLDRG-RLTDSHGREVDFKNAI 703 (898)
T ss_pred ------ceEEEEechhhcCHHHHHHHHHHHhcC-ccccCCCcEeeccceE
Confidence 26788883 45666666666777766 5777789999988553
No 317
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.47 E-value=0.11 Score=62.78 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=58.1
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-------hhhccccccCCCCCCccCH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-------MGQLYGEFDSASHEWRDGI 1421 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-------~~eL~G~~~~~t~eW~DG~ 1421 (1513)
.....++|+||||+||||++..|+..+..-.+. .++-+...++--+. ..+.+|- |...-=..+-
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-------~~V~lit~D~~R~ga~EqL~~~a~~~gv--~~~~~~~~~~ 205 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-------SKVALLTTDSYRIGGHEQLRIFGKILGV--PVHAVKDGGD 205 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------CeEEEEecccccccHHHHHHHHHHHcCC--ceEecCCccc
Confidence 345689999999999999999998765321110 01222222222111 1223331 1111112233
Q ss_pred HHHHHHHhhccCCCCceEEEEc--C--CCChHHHHhhhcccC----CCCceeecC
Q psy4730 1422 LAKTFREMAVSTTPDRKWIMFD--G--PIDAVWIENMNTVLD----DNKKLCLIN 1468 (1513)
Q Consensus 1422 l~~~lR~~~~~~~~~~~WivfD--G--~~d~~wiE~LNsvLD----dn~~L~L~n 1468 (1513)
+...+++. .+...|++| | +.|..+.|.+..+.. ..+.|+|+-
T Consensus 206 l~~~l~~l-----~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsA 255 (374)
T PRK14722 206 LQLALAEL-----RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNA 255 (374)
T ss_pred HHHHHHHh-----cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecC
Confidence 44555544 234889999 4 557888888876643 234677753
No 318
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.44 E-value=0.1 Score=68.56 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=22.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
+.++|.||||+||||+.+.+++.++
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999997653
No 319
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.42 E-value=0.052 Score=66.51 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.1
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..||+|+||||||||++.+.++..++
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC
Confidence 46999999999999999999987653
No 320
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.41 E-value=0.22 Score=58.00 Aligned_cols=94 Identities=22% Similarity=0.333 Sum_probs=63.8
Q ss_pred eEEecCceEEEEEecCCCCCCCCCchhHHhhhhcccccCCCh---HHHHHHHHH----hcCccc-----hHHHHHHHHHH
Q psy4730 1166 EISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPDY---AMIGEISLY----SMGFQN-----AKILAEKIVYT 1233 (1513)
Q Consensus 1166 ~i~~~p~~~iFiTmNp~y~gr~~LP~nLk~lFR~v~~~~PD~---~~I~ei~L~----~~GF~~-----a~~la~ki~~~ 1233 (1513)
...--.++.+.++|||+ +||..+|+-|.+.|+-+++..|+- ..|-..+|. ..+|.. +..+....+.+
T Consensus 142 ~~~~i~~i~~vaa~~p~-~Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~l 220 (272)
T PF12775_consen 142 EWKSIEDIQFVAAMNPT-GGRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIEL 220 (272)
T ss_dssp EEEEECSEEEEEEESST-TT--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHH
T ss_pred EEEEEeeeEEEEecCCC-CCCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHH
Confidence 33333467788999996 589999999999999999998877 334333333 346643 45667777889
Q ss_pred HHHHHhhcc---CCCCCCcchhhHHHHHHH
Q psy4730 1234 YKLCSEQLS---SQSHYDYGMRAVKSVLNA 1260 (1513)
Q Consensus 1234 ~~l~~~~ls---~q~~yd~glR~lk~vl~~ 1260 (1513)
|+.+++.+. ...||.|.||.+-+|+.-
T Consensus 221 y~~i~~~~~ptp~k~HY~FnlRDlsrv~qG 250 (272)
T PF12775_consen 221 YQKIRQQFLPTPSKPHYTFNLRDLSRVFQG 250 (272)
T ss_dssp HHHHHHHS-TTTTCTTTTSHHHHHHHHHHH
T ss_pred HHhhhcccCCCCccceeeccHHHHHHHHHH
Confidence 998888774 247999999999887654
No 321
>PRK08181 transposase; Validated
Probab=94.39 E-value=0.078 Score=61.40 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=55.1
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
.+.+++|+||||+|||.+..+++.....-+ . .|.+ ++..+|+..+.. .+.+|-+.+.++..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-~--------~v~f-------~~~~~L~~~l~~---a~~~~~~~~~l~~l 165 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENG-W--------RVLF-------TRTTDLVQKLQV---ARRELQLESAIAKL 165 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcC-C--------ceee-------eeHHHHHHHHHH---HHhCCcHHHHHHHH
Confidence 467899999999999999999987664311 0 1211 134556655532 24455555666554
Q ss_pred hccCCCCceEEEEc--C--CCChHHHHhhhcccCC
Q psy4730 1430 AVSTTPDRKWIMFD--G--PIDAVWIENMNTVLDD 1460 (1513)
Q Consensus 1430 ~~~~~~~~~WivfD--G--~~d~~wiE~LNsvLDd 1460 (1513)
. ....+|+| | +.++.|.+.|-.+++.
T Consensus 166 ~-----~~dLLIIDDlg~~~~~~~~~~~Lf~lin~ 195 (269)
T PRK08181 166 D-----KFDLLILDDLAYVTKDQAETSVLFELISA 195 (269)
T ss_pred h-----cCCEEEEeccccccCCHHHHHHHHHHHHH
Confidence 2 23688888 3 3466677777777753
No 322
>PRK06762 hypothetical protein; Provisional
Probab=94.38 E-value=0.029 Score=60.14 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-|+|+|++||||||+.+.|++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999887
No 323
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.37 E-value=0.059 Score=64.20 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=26.6
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
.+..++|+|||||||||+.+.|++.++..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~y 105 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEY 105 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 46799999999999999999999999874
No 324
>PLN02842 nucleotide kinase
Probab=94.37 E-value=0.064 Score=66.64 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEeccCCCCchHHHHHHHHHHH
Q psy4730 1355 MVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1355 ilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
||+|+|||||||..+.|++.++
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg 22 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG 22 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999998775
No 325
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=94.37 E-value=0.63 Score=58.41 Aligned_cols=121 Identities=10% Similarity=0.082 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceEeecCCCChH----HHHHHHHHHhh
Q psy4730 908 VELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNIISIDSFNEA----TLSKIFTSVLD 977 (1513)
Q Consensus 908 le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~~~~~~~~~~----~l~~i~~~~l~ 977 (1513)
-+-|.++++.+.+.-.+... ..-.|+.+|+|++.+ ...+.+.|+.+++.+.+.=|+-. ++..+...++.
T Consensus 250 q~~l~~~l~~~~~~~~~~~~-~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~ 328 (445)
T TIGR02915 250 QAKLLRFLQERVIERLGGRE-EIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLE 328 (445)
T ss_pred HHHHHHHHhhCeEEeCCCCc-eeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHH
Confidence 44455566655544333222 122489999999886 35688888888887666555543 55555555444
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhhcccCCcccCChh
Q psy4730 978 WHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKAPD 1045 (1513)
Q Consensus 978 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~~~~~~~~~~~~~ 1045 (1513)
.+ +..+...+.. +...+++.. ...+|-=|+|.|.++++-..........+..
T Consensus 329 ~~-~~~~~~~~~~----~~~~a~~~L-----------~~~~wpgNvreL~~~i~~a~~~~~~~~i~~~ 380 (445)
T TIGR02915 329 RF-ARELKRKTKG----FTDDALRAL-----------EAHAWPGNVRELENKVKRAVIMAEGNQITAE 380 (445)
T ss_pred HH-HHHhCCCCCC----CCHHHHHHH-----------HhCCCCChHHHHHHHHHHHHHhCCCCcccHH
Confidence 32 1101000000 111111111 2345666999999998766544444333333
No 326
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.36 E-value=0.16 Score=67.18 Aligned_cols=119 Identities=17% Similarity=0.176 Sum_probs=76.0
Q ss_pred HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC-CCC-
Q psy4730 1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA-SHE- 1416 (1513)
Q Consensus 1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~-t~e- 1416 (1513)
++-.+.....+|+|.|++|||||++.+.+.....+ ....+..+|+.+++ -.+|||.-... ++.
T Consensus 391 ~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-----------~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~ 459 (686)
T PRK15429 391 QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-----------NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGAS 459 (686)
T ss_pred HHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC-----------CCCCeEEEecccCChhHhhhhhcCcccccccccc
Confidence 34445567779999999999999998888654322 01356778888776 45788853311 010
Q ss_pred -CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730 1417 -WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus 1417 -W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
..-|.+ ..+ ..-=+++| +.+++..-+.|-.+|++...-.+.++ -..+.++|+|+-+
T Consensus 460 ~~~~g~l----e~a------~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~t 518 (686)
T PRK15429 460 AQRIGRF----ELA------DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN--KIIQTDVRLIAAT 518 (686)
T ss_pred cchhhHH----Hhc------CCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCC--CcccceEEEEEeC
Confidence 111222 111 12458888 67788889999999988755444333 3446678999876
No 327
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=94.33 E-value=0.43 Score=62.41 Aligned_cols=80 Identities=13% Similarity=0.240 Sum_probs=56.3
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCc-cccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCCh-
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNE- 965 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~- 965 (1513)
+|+|++|.-..+ ..+.|.+.++.|.. +.+.......-.++.++|+|||....+++.|+.||.+ +.+++|..
T Consensus 130 L~lDEi~~l~~~------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~ 203 (633)
T TIGR02442 130 LYIDEVNLLDDH------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDP 203 (633)
T ss_pred EEeChhhhCCHH------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCch
Confidence 567999955533 67888888887753 4444444444468999999998767799999999976 67777754
Q ss_pred HHHHHHHHH
Q psy4730 966 ATLSKIFTS 974 (1513)
Q Consensus 966 ~~l~~i~~~ 974 (1513)
+....|...
T Consensus 204 ~~~~~il~~ 212 (633)
T TIGR02442 204 EERVEIIRR 212 (633)
T ss_pred HHHHHHHHH
Confidence 343444443
No 328
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.26 E-value=0.092 Score=63.42 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=23.9
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.+--|+++|||||||||+++.|.+.++.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3457999999999999999999887753
No 329
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.25 E-value=0.063 Score=58.02 Aligned_cols=25 Identities=36% Similarity=0.284 Sum_probs=22.2
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
-++++|++|+||||+...++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988764
No 330
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.25 E-value=0.026 Score=63.17 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=22.9
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...-|-|+|||||||||+.+++|....
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345799999999999999999986654
No 331
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.25 E-value=0.037 Score=65.44 Aligned_cols=148 Identities=13% Similarity=0.160 Sum_probs=82.7
Q ss_pred cCccccHHHHHHHH-HHHHH------HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC
Q psy4730 1329 RNAQATDWYIEKII-QVYEM------ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI 1401 (1513)
Q Consensus 1329 ~~l~~~~~~~~k~~-qL~~~------~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~ 1401 (1513)
.++...+.|..|+. ++-.- +..-.|+.|.||||||||.+.+.+++.++. ++-.+
T Consensus 119 g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~-------------------~~i~v 179 (413)
T PLN00020 119 GGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGI-------------------EPIVM 179 (413)
T ss_pred CccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-------------------CeEEE
Confidence 67777888888775 33222 234459999999999999999999988762 23345
Q ss_pred ChhhccccccCCCCCCccCHHHHHHHHhhcc--CCCCceEEEEcC------CC---ChHHH-----HhhhcccCCCCcee
Q psy4730 1402 TMGQLYGEFDSASHEWRDGILAKTFREMAVS--TTPDRKWIMFDG------PI---DAVWI-----ENMNTVLDDNKKLC 1465 (1513)
Q Consensus 1402 t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~--~~~~~~WivfDG------~~---d~~wi-----E~LNsvLDdn~~L~ 1465 (1513)
+..||++.+-=++ .-.+-.+++.+... ......-|++|. .- +.... -.|=+++|.-....
T Consensus 180 sa~eL~sk~vGEs----Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~ 255 (413)
T PLN00020 180 SAGELESENAGEP----GKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVS 255 (413)
T ss_pred EHHHhhcCcCCcH----HHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccc
Confidence 5666766553121 11222333333221 234567888882 11 11111 22223334322222
Q ss_pred ecCCC--eeecCCCCeEEEeecCCCCCCcchhh--ccEE
Q psy4730 1466 LINGE--IIKMSNTMNLIFECENLEFASPATVS--RVGM 1500 (1513)
Q Consensus 1466 L~nGe--~i~~~~~~~~iFE~~~l~~asPatvs--Rcg~ 1500 (1513)
++ |. -..-.+.+.+|.-|.+.+..-||.+- |.--
T Consensus 256 l~-G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk 293 (413)
T PLN00020 256 LG-GDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEK 293 (413)
T ss_pred cc-ccccccccCCCceEEEeCCCcccCCHhHcCCCCCCc
Confidence 32 11 01124568888888888888888776 5543
No 332
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.25 E-value=0.39 Score=60.58 Aligned_cols=44 Identities=9% Similarity=0.172 Sum_probs=33.6
Q ss_pred eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
+.++.+++. ...+++.+.+|+..+.+.+|+.+.+......++..
T Consensus 150 ~v~Il~tt~-~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~ 193 (486)
T PRK14953 150 TIFILCTTE-YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE 193 (486)
T ss_pred eEEEEEECC-HHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH
Confidence 445555433 34578889999999999999999999888887654
No 333
>PLN02459 probable adenylate kinase
Probab=94.21 E-value=0.082 Score=60.48 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=50.3
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccc-cceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKE-FKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~-~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
-++|+|||||||||..+.|++.++-.. .+.+. ..- .+...+ ........+-..+.-=-|.+...++++...
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~----is~gdllR~---ei~~~t-~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~ 102 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPH----IATGDLVRE---EIKSSG-PLGAQLKEIVNQGKLVPDEIIFSLLSKRLE 102 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE----EeCcHHHHH---HHhccc-hhHHHHHHHHHcCCccCHHHHHHHHHHHHh
Confidence 388899999999999999998775310 00000 000 011111 111111111112222445566666665543
Q ss_pred cC-CCCceEEEEcC-CCChHHHHhhhcccC
Q psy4730 1432 ST-TPDRKWIMFDG-PIDAVWIENMNTVLD 1459 (1513)
Q Consensus 1432 ~~-~~~~~WivfDG-~~d~~wiE~LNsvLD 1459 (1513)
.. ....+=+|+|| |-...-++.|.....
T Consensus 103 ~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~ 132 (261)
T PLN02459 103 AGEEEGESGFILDGFPRTVRQAEILEGVTD 132 (261)
T ss_pred cccccCCceEEEeCCCCCHHHHHHHHhcCC
Confidence 32 12234477899 556666777766543
No 334
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.20 E-value=0.034 Score=56.43 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEeccCCCCchHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
|+|.|+|||||||+.+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999986
No 335
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.18 E-value=0.045 Score=68.99 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=22.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
+-.+|.|||||||||++++||+.++
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578899999999999999999886
No 336
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.17 E-value=0.027 Score=66.61 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.8
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+.|+|||||||||+++++|.-.
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999998543
No 337
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.16 E-value=0.2 Score=58.17 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=25.2
Q ss_pred HHHHHHhcce-EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1344 VYEMILVRHG-LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1344 L~~~~~~~~g-vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|.+++...+| |++.|||||||||+++.+...+.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3444444454 89999999999999998877664
No 338
>PRK05642 DNA replication initiation factor; Validated
Probab=94.14 E-value=0.062 Score=61.23 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=22.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.+++|.||+|+|||.+.++++..+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~ 70 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE 70 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999877654
No 339
>KOG2028|consensus
Probab=94.13 E-value=0.14 Score=59.30 Aligned_cols=115 Identities=24% Similarity=0.332 Sum_probs=67.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC--hhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT--MGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t--~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
..+||-||||+||||+.+.|+..-.. ..++.|.-.+.+ .+++= |+|-++=+..
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~-------------~SyrfvelSAt~a~t~dvR------------~ife~aq~~~ 217 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKK-------------HSYRFVELSATNAKTNDVR------------DIFEQAQNEK 217 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCC-------------CceEEEEEeccccchHHHH------------HHHHHHHHHH
Confidence 48999999999999999999866432 223344433333 12211 1222211111
Q ss_pred hccCCCCceEEEE-cCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCC-CCcchhhccEEEEeeCC
Q psy4730 1430 AVSTTPDRKWIMF-DGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEF-ASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1430 ~~~~~~~~~Wivf-DG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~-asPatvsRcg~v~~~~~ 1506 (1513)
.-.+++=|+| |. |.++|.+=-|.=.-.+-+|.++-+... |+|-+. .--|.+|||-++.+++-
T Consensus 218 ---~l~krkTilFiDE------iHRFNksQQD~fLP~VE~G~I~lIGAT------TENPSFqln~aLlSRC~VfvLekL 281 (554)
T KOG2028|consen 218 ---SLTKRKTILFIDE------IHRFNKSQQDTFLPHVENGDITLIGAT------TENPSFQLNAALLSRCRVFVLEKL 281 (554)
T ss_pred ---hhhcceeEEEeHH------hhhhhhhhhhcccceeccCceEEEecc------cCCCccchhHHHHhccceeEeccC
Confidence 1234444444 43 788998876664445557888766432 222221 33589999999887753
No 340
>KOG0744|consensus
Probab=94.08 E-value=0.033 Score=63.67 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=25.7
Q ss_pred HHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1348 ILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
+..++-|+|.||||+||||++++||.-++
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 45678999999999999999999997765
No 341
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.05 E-value=0.046 Score=64.78 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=28.5
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|..++..+..+++.|+|||||||+.+.|...+.
T Consensus 137 L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 137 IRSAIDSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 555677788999999999999999999988764
No 342
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.05 E-value=0.03 Score=57.92 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=18.9
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
=|||+|++||||||+++.|..
T Consensus 3 rimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999854
No 343
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.02 E-value=0.016 Score=64.19 Aligned_cols=86 Identities=14% Similarity=0.300 Sum_probs=49.5
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccC---------------CC
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDS---------------AS 1414 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~---------------~t 1414 (1513)
....+++.|+|||||||++..+...+. . ..+.+|||..+- .++-.++. ..
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--~-----------~~~v~i~~D~~r--~~~p~~~~~~~~~~~~~~~~~~~~a 78 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG--G-----------GGIVVIDADEFR--QFHPDYDELLKADPDEASELTQKEA 78 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT---T-----------T-SEEE-GGGGG--GGSTTHHHHHHHHCCCTHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc--C-----------CCeEEEehHHHH--HhccchhhhhhhhhhhhHHHHHHHH
Confidence 345889999999999999999877663 1 234667766542 22221111 11
Q ss_pred CCCccCHHHHHHHHhhccCCCCceEEEEcCCC-ChHHHHhhhccc
Q psy4730 1415 HEWRDGILAKTFREMAVSTTPDRKWIMFDGPI-DAVWIENMNTVL 1458 (1513)
Q Consensus 1415 ~eW~DG~l~~~lR~~~~~~~~~~~WivfDG~~-d~~wiE~LNsvL 1458 (1513)
..|.|.++..++++. .=|||||.. +++++..+-..+
T Consensus 79 ~~~~~~~~~~a~~~~--------~nii~E~tl~~~~~~~~~~~~~ 115 (199)
T PF06414_consen 79 SRLAEKLIEYAIENR--------YNIIFEGTLSNPSKLRKLIREA 115 (199)
T ss_dssp HHHHHHHHHHHHHCT----------EEEE--TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--------CCEEEecCCCChhHHHHHHHHH
Confidence 237777777777765 558889877 467777544444
No 344
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.077 Score=64.41 Aligned_cols=131 Identities=16% Similarity=0.158 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhh--------hcccc---c---ccceeEEEecCCCCCh
Q psy4730 1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK--------KSATM---K---EFKTGYKIINPKSITM 1403 (1513)
Q Consensus 1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~--------~~~~~---~---~~~~~~~~inp~~~t~ 1403 (1513)
.+.++.+ +---.|+++++||||||||.+.+-|...+--+... .+... . -....-++-..++.|+
T Consensus 187 AKrAlei--AAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~ 264 (490)
T COG0606 187 AKRALEI--AAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASL 264 (490)
T ss_pred HHHHHHH--HHhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchH
Confidence 3444443 34468999999999999999998764332211110 00000 0 0112234556677889
Q ss_pred hhccccccCCCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEE
Q psy4730 1404 GQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus 1404 ~eL~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
..|.|.+ +.-.-|-++.+ ++--+.+| +.-....+|+|-.=|++.+..----|-.+..|-++.++
T Consensus 265 ~aLvGGG----~~p~PGeIsLA----------H~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv 330 (490)
T COG0606 265 AALVGGG----GVPRPGEISLA----------HNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLV 330 (490)
T ss_pred HHHhCCC----CCCCCCceeee----------cCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEh
Confidence 9999976 23333433322 23456778 66677889999988877765555567789999888888
Q ss_pred Eee
Q psy4730 1482 FEC 1484 (1513)
Q Consensus 1482 FE~ 1484 (1513)
+-+
T Consensus 331 ~Am 333 (490)
T COG0606 331 AAM 333 (490)
T ss_pred hhc
Confidence 854
No 345
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.00 E-value=0.031 Score=60.91 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.9
Q ss_pred HhcceEEEeccCCCCchHHHHHHH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
....-|.++|||||||||+++++.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999999984
No 346
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.99 E-value=0.34 Score=62.04 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=34.3
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.+++.+ ..+.+-+++|+..+.+..++.+++..++..++..
T Consensus 149 ~~ifILaTt~~-~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 149 RVTFVLATTEP-HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred CEEEEEecCCh-hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH
Confidence 45666666543 3456678999999999999999999888887653
No 347
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.99 E-value=0.063 Score=64.02 Aligned_cols=33 Identities=33% Similarity=0.546 Sum_probs=26.3
Q ss_pred HHHHHhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730 721 FINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 721 ~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
+.+-+-..+.+++|.||+|+|||.++......+
T Consensus 175 f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 175 FIENFDKNNENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred HHHHHhccCCcEEEECCCCCcHHHHHHHHHHHH
Confidence 444444567899999999999999999887654
No 348
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.96 E-value=0.51 Score=57.64 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=34.3
Q ss_pred eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
..+|.+++. +..+.+.+.+|+.++.+.+|+.+++..+...++..
T Consensus 139 ~~~Il~~~~-~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~ 182 (367)
T PRK14970 139 AIFILATTE-KHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVK 182 (367)
T ss_pred eEEEEEeCC-cccCCHHHHhcceeEecCCccHHHHHHHHHHHHHH
Confidence 345555443 46778889999999999999999999888887654
No 349
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.08 Score=61.73 Aligned_cols=125 Identities=20% Similarity=0.321 Sum_probs=68.1
Q ss_pred HHHHHHHhcc--eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccC
Q psy4730 1343 QVYEMILVRH--GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus 1343 qL~~~~~~~~--gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
.||+.+.... ||+|+||||+|||-+.++.|...+. .-+. +.-..+ .+.+.|. |
T Consensus 175 ElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-------------tFIr-vvgSEl-VqKYiGE----------G 229 (406)
T COG1222 175 ELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-------------TFIR-VVGSEL-VQKYIGE----------G 229 (406)
T ss_pred HHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-------------eEEE-eccHHH-HHHHhcc----------c
Confidence 4677776665 9999999999999999998865442 2222 221111 3445552 2
Q ss_pred HHHHHHHHhhc-cCCCCceEEEEcCCCChHHHHhhhcccCCC----Cc-eeecC-CCeeecCCCCeEEEeecCCCCCCcc
Q psy4730 1421 ILAKTFREMAV-STTPDRKWIMFDGPIDAVWIENMNTVLDDN----KK-LCLIN-GEIIKMSNTMNLIFECENLEFASPA 1493 (1513)
Q Consensus 1421 ~l~~~lR~~~~-~~~~~~~WivfDG~~d~~wiE~LNsvLDdn----~~-L~L~n-Ge~i~~~~~~~~iFE~~~l~~asPa 1493 (1513)
++++|+... ........|.+|. +|+.=.-+.++-=... |+ |-|-| =+=..-..|+++|+.|.-..-.=||
T Consensus 230 --aRlVRelF~lArekaPsIIFiDE-IDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPA 306 (406)
T COG1222 230 --ARLVRELFELAREKAPSIIFIDE-IDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPA 306 (406)
T ss_pred --hHHHHHHHHHHhhcCCeEEEEec-hhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChh
Confidence 688888643 3344567777773 2222111111111000 00 00100 1113335688888888777766676
Q ss_pred hh
Q psy4730 1494 TV 1495 (1513)
Q Consensus 1494 tv 1495 (1513)
.+
T Consensus 307 LL 308 (406)
T COG1222 307 LL 308 (406)
T ss_pred hc
Confidence 53
No 350
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.94 E-value=0.44 Score=58.09 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=31.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT 1402 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t 1402 (1513)
..++|.||||+|||++++.+.+.+....... +.++.+..+|+....
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~-----~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDR-----DVRVVTVYVNCQILD 86 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhcc-----CCceEEEEEECCCCC
Confidence 5799999999999999999988876432110 112455667765544
No 351
>PLN02674 adenylate kinase
Probab=93.93 E-value=0.11 Score=59.06 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=50.7
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
.-|+|+|||||||||..+.|++.++-.. .+++. .--..+..++-.-.++-..++ .+.-=-|.+...++++...
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~h----is~Gd--llR~~i~~~s~~g~~i~~~~~-~G~lvpd~iv~~lv~~~l~ 104 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCH----LATGD--MLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMK 104 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcE----EchhH--HHHHHHhccChhhHHHHHHHH-cCCccCHHHHHHHHHHHHh
Confidence 4699999999999999999998765310 00000 000001111111111111122 2333455666677766544
Q ss_pred cCCCCceEEEEcC-CCChHHHHhhhccc
Q psy4730 1432 STTPDRKWIMFDG-PIDAVWIENMNTVL 1458 (1513)
Q Consensus 1432 ~~~~~~~WivfDG-~~d~~wiE~LNsvL 1458 (1513)
..... .=+|+|| |-...-++.|...|
T Consensus 105 ~~~~~-~g~ilDGfPRt~~Qa~~l~~~l 131 (244)
T PLN02674 105 KPSCQ-KGFILDGFPRTVVQAQKLDEML 131 (244)
T ss_pred CcCcC-CcEEEeCCCCCHHHHHHHHHHH
Confidence 33222 3367898 55555566655544
No 352
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.89 E-value=0.051 Score=64.09 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=28.3
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|..++..+..++++|+|||||||+.+.|...+.
T Consensus 125 L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 125 LREAVLARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 555666788999999999999999999987764
No 353
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.88 E-value=0.047 Score=49.41 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEeccCCCCchHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
|.+.|++||||||+.+.|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999887
No 354
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.85 E-value=0.068 Score=54.89 Aligned_cols=36 Identities=22% Similarity=0.124 Sum_probs=30.0
Q ss_pred HHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1342 IQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1342 ~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.+|.+.+....-|.|.|+.|+||||+++.++++++.
T Consensus 13 ~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 13 KAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 345555666778999999999999999999999864
No 355
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.80 E-value=0.049 Score=59.70 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=27.2
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|..++..+..++++||+||||||+++.|...+.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 344566778999999999999999999987654
No 356
>PRK06526 transposase; Provisional
Probab=93.74 E-value=0.049 Score=62.63 Aligned_cols=28 Identities=29% Similarity=0.642 Sum_probs=23.6
Q ss_pred hcCCccceeccCCCccchHhHHHHHhcc
Q psy4730 726 LQNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
+..+.+++|+||||||||++...+...+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 4567899999999999999999886544
No 357
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.74 E-value=0.37 Score=62.20 Aligned_cols=45 Identities=9% Similarity=0.123 Sum_probs=35.4
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.||.+++.+ +.|++.+++|+..+.+..++.+.+......++..
T Consensus 149 ~~~fIl~t~~~-~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~ 193 (576)
T PRK14965 149 HVKFIFATTEP-HKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ 193 (576)
T ss_pred CeEEEEEeCCh-hhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH
Confidence 45566666544 5688999999999999999999998887777654
No 358
>KOG0652|consensus
Probab=93.72 E-value=0.2 Score=55.42 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCccceeccCCCccchHhHHHHHhc
Q psy4730 719 NFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLN 752 (1513)
Q Consensus 719 ~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~ 752 (1513)
..|-++-+..-+-||+.||||||||.+...|...
T Consensus 195 ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 195 EKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred HHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHh
Confidence 3345555677789999999999999999988753
No 359
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.68 E-value=0.15 Score=63.24 Aligned_cols=95 Identities=22% Similarity=0.278 Sum_probs=53.8
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-h------hhccccccCCCCCCccCHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-M------GQLYGEFDSASHEWRDGILA 1423 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~------~eL~G~~~~~t~eW~DG~l~ 1423 (1513)
...++++||+|+||||++-.||..+....+. .+|-+...+|--.. . .+..|. |........-+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g-------~~V~li~~D~~r~~a~eqL~~~a~~~~v--p~~~~~~~~~l~ 291 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK-------KKVALITLDTYRIGAVEQLKTYAKIMGI--PVEVVYDPKELA 291 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------CeEEEEECCccHHHHHHHHHHHHHHhCC--ceEccCCHHhHH
Confidence 4579999999999999999998877522111 12333334442111 1 122221 000111122234
Q ss_pred HHHHHhhccCCCCceEEEEcCC----CChHHHHhhhcccC
Q psy4730 1424 KTFREMAVSTTPDRKWIMFDGP----IDAVWIENMNTVLD 1459 (1513)
Q Consensus 1424 ~~lR~~~~~~~~~~~WivfDG~----~d~~wiE~LNsvLD 1459 (1513)
..+++. ....+|+.|.+ .|+.-++.|..+++
T Consensus 292 ~~l~~~-----~~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 292 KALEQL-----RDCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred HHHHHh-----CCCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 445443 23589999933 57778888888887
No 360
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.64 E-value=0.47 Score=57.79 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=23.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|+++||+|+||||++.-||..+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~ 200 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGI 200 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987753
No 361
>CHL00176 ftsH cell division protein; Validated
Probab=93.63 E-value=0.12 Score=67.11 Aligned_cols=123 Identities=15% Similarity=0.209 Sum_probs=65.9
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
...||+|+||||||||++.+.+|...+ +.+..+++..+. ..+.|. + ..-+..+++++
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~~--------------~p~i~is~s~f~-~~~~g~----~----~~~vr~lF~~A 271 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEAE--------------VPFFSISGSEFV-EMFVGV----G----AARVRDLFKKA 271 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC--------------CCeeeccHHHHH-HHhhhh----h----HHHHHHHHHHH
Confidence 346999999999999999999986542 334444433221 111110 0 00122233333
Q ss_pred hccCCCCceEEEEcCC-------------CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh
Q psy4730 1430 AVSTTPDRKWIMFDGP-------------IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS 1496 (1513)
Q Consensus 1430 ~~~~~~~~~WivfDG~-------------~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs 1496 (1513)
. ...+..|++|.. .++.+-..||.+|..- +| +.-.+++.+|.-|.+.....||.+.
T Consensus 272 ~---~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~------dg--~~~~~~ViVIaaTN~~~~LD~ALlR 340 (638)
T CHL00176 272 K---ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEM------DG--FKGNKGVIVIAATNRVDILDAALLR 340 (638)
T ss_pred h---cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhh------cc--ccCCCCeeEEEecCchHhhhhhhhc
Confidence 2 234568888842 1344555667665211 11 1113456677777776777777775
Q ss_pred cc---EEEEeeCC
Q psy4730 1497 RV---GMIYFELK 1506 (1513)
Q Consensus 1497 Rc---g~v~~~~~ 1506 (1513)
++ -.|+++.-
T Consensus 341 pGRFd~~I~v~lP 353 (638)
T CHL00176 341 PGRFDRQITVSLP 353 (638)
T ss_pred cccCceEEEECCC
Confidence 32 34555543
No 362
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.60 E-value=0.47 Score=59.35 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=35.1
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.+|.+++. +..|.+.+.+|+.++.+.+++.+++......++..
T Consensus 151 ~~~~Il~t~~-~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~ 195 (451)
T PRK06305 151 HVKFFLATTE-IHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ 195 (451)
T ss_pred CceEEEEeCC-hHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH
Confidence 3455555543 35688999999999999999999999888877553
No 363
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=93.59 E-value=0.18 Score=61.27 Aligned_cols=122 Identities=13% Similarity=0.187 Sum_probs=81.6
Q ss_pred HHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCC
Q psy4730 1342 IQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEW 1417 (1513)
Q Consensus 1342 ~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW 1417 (1513)
-++.-.-.+...|+|.|+||+||--+.+++...-.+ . ......+|+.++. -+||||+.
T Consensus 237 ~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R----~-------~kPfV~~NCAAlPesLlESELFGHe------- 298 (550)
T COG3604 237 KEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR----R-------DKPFVKLNCAALPESLLESELFGHE------- 298 (550)
T ss_pred HHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc----c-------CCCceeeeccccchHHHHHHHhccc-------
Confidence 334445567789999999999998887776544333 1 2456789999998 78999964
Q ss_pred ccCHHHHHHHHhh-ccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730 1418 RDGILAKTFREMA-VSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus 1418 ~DG~l~~~lR~~~-~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
-|.||-++++-. .-+-.+.-=+.+| |++..+.==-|=+||-+.-.=-+.+...|++ .+|+|..|
T Consensus 299 -KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikV--DVRiIAAT 365 (550)
T COG3604 299 -KGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKV--DVRVIAAT 365 (550)
T ss_pred -ccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEE--EEEEEecc
Confidence 377777765421 1111223457778 8998887777888886554444444444554 48888877
No 364
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.56 E-value=0.043 Score=58.59 Aligned_cols=29 Identities=34% Similarity=0.304 Sum_probs=24.6
Q ss_pred HHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1348 ILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
+....-|.++|||||||||+.+++|..+.
T Consensus 28 ia~ge~vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 28 IASGELVVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCcC
Confidence 34566899999999999999999987664
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.54 E-value=0.32 Score=56.69 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=23.5
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.+-++++||+|+||||++..||..+..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 357899999999999999999988754
No 366
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.53 E-value=0.063 Score=47.25 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.8
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..+|.||+||||||++.++.-++-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 499999999999999998876653
No 367
>PRK03839 putative kinase; Provisional
Probab=93.48 E-value=0.046 Score=59.48 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=22.1
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|+|+|||||||+.+.|++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999875
No 368
>KOG0991|consensus
Probab=93.45 E-value=0.067 Score=58.44 Aligned_cols=27 Identities=33% Similarity=0.288 Sum_probs=23.5
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+-+++-||||+||||++.+||..+
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 344579999999999999999999876
No 369
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.45 E-value=0.13 Score=62.19 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=23.7
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.+-.|++.|||||||||+++.|...+..
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456889999999999999999887754
No 370
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.42 E-value=0.17 Score=60.06 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccC---
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG--- 1420 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG--- 1420 (1513)
|..++..+..++++||+||||||+++.|...+.. ....+.+=++..+...+ =....-......+|
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~-----------~~~iv~ied~~El~~~~-~~~~~l~~~~~~~~~~~ 204 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK-----------DERIITIEDTREIFLPH-PNYVHLFYSKGGQGLAK 204 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc-----------cccEEEEcCccccCCCC-CCEEEEEecCCCCCcCc
Q ss_pred -----HHHHHHHHhhccCCCCceEEEEcCCCChHHHHhhhcccCCCCc-ee
Q psy4730 1421 -----ILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKK-LC 1465 (1513)
Q Consensus 1421 -----~l~~~lR~~~~~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~-L~ 1465 (1513)
++..++|.. ..||++|.+-+.+-.+.++.+...... ++
T Consensus 205 ~~~~~~l~~~Lr~~-------pd~ii~gE~r~~e~~~~l~a~~~g~~~~i~ 248 (308)
T TIGR02788 205 VTPKDLLQSCLRMR-------PDRIILGELRGDEAFDFIRAVNTGHPGSIT 248 (308)
T ss_pred cCHHHHHHHHhcCC-------CCeEEEeccCCHHHHHHHHHHhcCCCeEEE
No 371
>KOG0727|consensus
Probab=93.41 E-value=0.11 Score=57.08 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=27.4
Q ss_pred HHHHHHHhc--ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1343 QVYEMILVR--HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1343 qL~~~~~~~--~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
+||..+... +||++.||||||||.+.++.|...
T Consensus 179 ~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 179 DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred HHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 577777665 499999999999999999887554
No 372
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.40 E-value=0.053 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.1
Q ss_pred cceEEEeccCCCCchHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
...+.|+|||||||||+.+++.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999985
No 373
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.39 E-value=0.039 Score=65.65 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.5
Q ss_pred hcce--EEEeccCCCCchHHHHHHHHHH
Q psy4730 1350 VRHG--LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1350 ~~~g--vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.+.| +-|+|||||||||+++++|..-
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455 7799999999999999998553
No 374
>PF13245 AAA_19: Part of AAA domain
Probab=93.37 E-value=0.087 Score=48.69 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=17.1
Q ss_pred ceEEEeccCCCCch-HHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKT-TAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKT-t~~~~L~~~~ 1375 (1513)
+-++|.|||||||| ++.+.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34555999999999 5556655555
No 375
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.36 E-value=0.046 Score=59.93 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|+||+||||||+.+.|+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999976543
No 376
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.31 E-value=0.087 Score=65.24 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.7
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.++++|.||+|+|||.+.+.++..+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~ 162 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILE 162 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 358999999999999999999887754
No 377
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.31 E-value=0.66 Score=59.50 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=34.3
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
.+.||.++.-+ ..+++.+.+|+..+.+..++.+.+......++.
T Consensus 149 ~~vfI~~tte~-~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~ 192 (563)
T PRK06647 149 YIVFIFATTEV-HKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCL 192 (563)
T ss_pred CEEEEEecCCh-HHhHHHHHHhceEEEecCCCHHHHHHHHHHHHH
Confidence 45566555333 468899999999999999999999888877654
No 378
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.31 E-value=0.054 Score=64.84 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=26.9
Q ss_pred HHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1345 YEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1345 ~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..+++.+..|+++|||||||||+.++|...+.
T Consensus 156 ~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 156 HACVVGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHHHHcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 33466778999999999999999999987664
No 379
>KOG1970|consensus
Probab=93.30 E-value=0.12 Score=63.14 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=32.5
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhcccc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGE 1409 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~ 1409 (1513)
+-.+|.||+||||||++++|++.++- .-..-+||-.....+.++.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~-------------~~~Ew~Npi~~~~~~~~h~ 155 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGY-------------QLIEWSNPINLKEPENLHN 155 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCc-------------eeeeecCCccccccccccc
Confidence 46788999999999999999998873 1233466666555555443
No 380
>KOG0740|consensus
Probab=93.30 E-value=0.39 Score=58.37 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=37.8
Q ss_pred ceEEEEeecCCCCCCChhhhccceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
.+.++||.|-|+ .++..++|||.= +|++.|+.++...++..+|..+
T Consensus 290 rvlvigaTN~P~-e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 290 RVLVIGATNRPW-ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred eEEEEecCCCch-HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC
Confidence 678889999875 366667777764 8899999999999999998765
No 381
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.29 E-value=0.064 Score=54.76 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=21.2
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.+..++|.||||+|||++++.+++.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 4568999999999999999999988764
No 382
>KOG0739|consensus
Probab=93.29 E-value=0.14 Score=57.90 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=35.8
Q ss_pred ceEEEEeecCCCCCCChhhhccceE-eecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+..++|+|-|+. ++..++|||-- |||+-|....-.++|.--|..
T Consensus 269 gvLVLgATNiPw~-LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~ 314 (439)
T KOG0739|consen 269 GVLVLGATNIPWV-LDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD 314 (439)
T ss_pred ceEEEecCCCchh-HHHHHHHHhhcceeccCCcHHHhhhhheeccCC
Confidence 4667788888863 67778888876 999999999999988876543
No 383
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=93.27 E-value=0.082 Score=67.79 Aligned_cols=145 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred cceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhhccCCCCCCCC-----ceEEEEeccc
Q psy4730 731 PMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMG-----KKYIVFIAGS 805 (1513)
Q Consensus 731 ~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~~~~~~~~~~-----~~~~~f~~~~ 805 (1513)
++||+|.||+|||.+.+.+..-++..-|..-..+=.+..+++.+.+ +.-| ...++..+|-
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd---------------~~tge~~LeaGALVlAD~G 385 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRD---------------KVTGEWVLEAGALVLADGG 385 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEc---------------cCCCeEEEeCCEEEEecCC
Q ss_pred ccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHHHHHhhhcccchhHHHHHHHH
Q psy4730 806 LKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQ 885 (1513)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (1513)
+
T Consensus 386 v------------------------------------------------------------------------------- 386 (682)
T COG1241 386 V------------------------------------------------------------------------------- 386 (682)
T ss_pred E-------------------------------------------------------------------------------
Q ss_pred HHHHHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeec-ceEEEEeecCC------------CCCCChhh
Q psy4730 886 VYEMILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLV-DIIYITAMIPT------------MNTITGRL 951 (1513)
Q Consensus 886 ~~~~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~-~~~~~~a~~~~------------~~~~~~r~ 951 (1513)
+++|++. |+..| ---|...++.+..---+-.-.-.+. ...++||+||. ...+|+-|
T Consensus 387 ---~cIDEfdKm~~~d-------r~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~l 456 (682)
T COG1241 387 ---CCIDEFDKMNEED-------RVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPL 456 (682)
T ss_pred ---EEEEeccCCChHH-------HHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhH
Q ss_pred hccceE--eecCCCChHHHHHHHHHHhhhh
Q psy4730 952 LRHMNI--ISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 952 ~~~f~~--~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
++||-+ +..|.|+.+.-..|..-++..|
T Consensus 457 LSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 457 LSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred HhhCCeeEEecCCCCccchHHHHHHHHHHH
No 384
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.27 E-value=0.05 Score=60.72 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.1
Q ss_pred hcceEEEeccCCCCchHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
...-|.|+|||||||||+.+++...
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999998644
No 385
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.23 E-value=0.051 Score=59.05 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=21.7
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-++|+|||||||||+.+.|+..+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999988764
No 386
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.23 E-value=0.16 Score=55.87 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.3
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+|+|+|||||||+.+.|++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998865
No 387
>PRK10536 hypothetical protein; Provisional
Probab=93.22 E-value=0.14 Score=58.22 Aligned_cols=146 Identities=14% Similarity=0.071 Sum_probs=83.7
Q ss_pred HHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCC-----CccCH
Q psy4730 1347 MILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHE-----WRDGI 1421 (1513)
Q Consensus 1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~e-----W~DG~ 1421 (1513)
++..+.-|++.||+|||||++...++...-. .+ .+...+|....++..|.+|++ |-+.+ |--.+
T Consensus 70 al~~~~lV~i~G~aGTGKT~La~a~a~~~l~-~~---------~~~kIiI~RP~v~~ge~LGfL-PG~~~eK~~p~~~pi 138 (262)
T PRK10536 70 AIESKQLIFATGEAGCGKTWISAAKAAEALI-HK---------DVDRIIVTRPVLQADEDLGFL-PGDIAEKFAPYFRPV 138 (262)
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHHHHHh-cC---------CeeEEEEeCCCCCchhhhCcC-CCCHHHHHHHHHHHH
Confidence 3444678999999999999999988763210 11 133344444556788989965 43321 43222
Q ss_pred HHHH--------HHHhh---------------ccCCCCceEEEEcC--CCChHHHHhhhcccCCCCce-eecCCCeeecC
Q psy4730 1422 LAKT--------FREMA---------------VSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKL-CLINGEIIKMS 1475 (1513)
Q Consensus 1422 l~~~--------lR~~~---------------~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L-~L~nGe~i~~~ 1475 (1513)
...+ +++.. ...+-...+||+|- .+++.-+..+.|-+.+|..+ .+.+-..|-.|
T Consensus 139 ~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~QiD~p 218 (262)
T PRK10536 139 YDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLP 218 (262)
T ss_pred HHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChhhccCC
Confidence 2111 11110 11233568999994 56887777777777777554 45555667766
Q ss_pred CCCeEEEeecCCCCCCcc--hhhccEEEEeeCCCC
Q psy4730 1476 NTMNLIFECENLEFASPA--TVSRVGMIYFELKCI 1508 (1513)
Q Consensus 1476 ~~~~~iFE~~~l~~asPa--tvsRcg~v~~~~~~~ 1508 (1513)
+.. +.-|.+|.-. -...+|+|+|+.+++
T Consensus 219 ~~~-----~sGL~~~~~~~k~~~~~~~i~l~~~d~ 248 (262)
T PRK10536 219 RGV-----KSGLSDALERFEEDEMVGIVRFGKEDC 248 (262)
T ss_pred CCC-----CCCHHHHHHHhCCCCceEEEEEecCce
Confidence 421 2223322221 145688888886553
No 388
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.20 E-value=0.14 Score=65.22 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.7
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
...|++|+||||||||++.+.++...
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 34599999999999999999998654
No 389
>KOG1534|consensus
Probab=93.16 E-value=0.075 Score=57.27 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=26.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAA 1380 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~ 1380 (1513)
+.++++.||+||||||-+..+-.....+++
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gR 32 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGR 32 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHHHHhhCc
Confidence 568999999999999999999888776654
No 390
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.16 E-value=0.067 Score=66.68 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=66.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
++++|+||+|+|||.+.++++..+..... ...+..++...+ ..++...+. .|-.........
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~---------~~~v~yi~~~~f-~~~~~~~~~-------~~~~~~f~~~~~- 192 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP---------DLRVMYITSEKF-LNDLVDSMK-------EGKLNEFREKYR- 192 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCC---------CCeEEEEEHHHH-HHHHHHHHh-------cccHHHHHHHHH-
Confidence 57999999999999999999987653211 122333332211 222222221 111111111110
Q ss_pred cCCCCceEEEEcCCC---C-----hHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccE---E
Q psy4730 1432 STTPDRKWIMFDGPI---D-----AVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG---M 1500 (1513)
Q Consensus 1432 ~~~~~~~WivfDG~~---d-----~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg---~ 1500 (1513)
.....+++|.+= + ....+-+|.+.+.++.+.+.+.. +| .++....|..+||++ +
T Consensus 193 ---~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~----~p--------~~l~~l~~rL~SR~~~gl~ 257 (440)
T PRK14088 193 ---KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR----EP--------QKLSEFQDRLVSRFQMGLV 257 (440)
T ss_pred ---hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCC----CH--------HHHHHHHHHHhhHHhcCce
Confidence 124789999542 2 23555667776665544443221 11 245567788999987 6
Q ss_pred EEeeCCC
Q psy4730 1501 IYFELKC 1507 (1513)
Q Consensus 1501 v~~~~~~ 1507 (1513)
+.+++-+
T Consensus 258 v~i~~pd 264 (440)
T PRK14088 258 AKLEPPD 264 (440)
T ss_pred EeeCCCC
Confidence 6666654
No 391
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.14 E-value=0.065 Score=58.30 Aligned_cols=88 Identities=19% Similarity=0.297 Sum_probs=54.6
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
....+++|.||||+|||.+...++..+-. .+. .+.+ ++..+|+..+.. .+.+|-..+.+++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~--------~v~f-------~~~~~L~~~l~~---~~~~~~~~~~~~~ 105 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR-KGY--------SVLF-------ITASDLLDELKQ---SRSDGSYEELLKR 105 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT----------EEE-------EEHHHHHHHHHC---CHCCTTHCHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCc--------ceeE-------eecCceeccccc---cccccchhhhcCc
Confidence 45679999999999999999999876544 111 1222 245677776653 3556666666666
Q ss_pred hhccCCCCceEEEEc--C--CCChHHHHhhhcccCC
Q psy4730 1429 MAVSTTPDRKWIMFD--G--PIDAVWIENMNTVLDD 1460 (1513)
Q Consensus 1429 ~~~~~~~~~~WivfD--G--~~d~~wiE~LNsvLDd 1460 (1513)
... ..-+|+| | +.+....+-|-.++|.
T Consensus 106 l~~-----~dlLilDDlG~~~~~~~~~~~l~~ii~~ 136 (178)
T PF01695_consen 106 LKR-----VDLLILDDLGYEPLSEWEAELLFEIIDE 136 (178)
T ss_dssp HHT-----SSCEEEETCTSS---HHHHHCTHHHHHH
T ss_pred ccc-----ccEecccccceeeecccccccchhhhhH
Confidence 533 2778999 4 4556667777777653
No 392
>KOG1533|consensus
Probab=93.11 E-value=0.081 Score=58.01 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=25.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAA 1380 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~ 1380 (1513)
-|.+++|||||||||-+....+.++.+++
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr 31 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGR 31 (290)
T ss_pred cceEEEcCCCCCccchhhhHHHHHHHhCC
Confidence 48899999999999999999988887765
No 393
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.09 E-value=0.86 Score=59.17 Aligned_cols=44 Identities=2% Similarity=0.190 Sum_probs=32.8
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
++.||.+++.+. .+.+-+.+|+..+.+..++.+++......+..
T Consensus 151 ~tvfIL~t~~~~-~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~ 194 (620)
T PRK14948 151 RVVFVLATTDPQ-RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAE 194 (620)
T ss_pred CeEEEEEeCChh-hhhHHHHhheeEEEecCCCHHHHHHHHHHHHH
Confidence 456666665544 37778999999999999999888776666543
No 394
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.08 E-value=0.19 Score=60.23 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=54.4
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-h------hhcccc-ccCCCCCCccCH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-M------GQLYGE-FDSASHEWRDGI 1421 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~------~eL~G~-~~~~t~eW~DG~ 1421 (1513)
...-++++||+||||||++..|+..+..-+ .+|-+...+|--.. . .+..|- +-.. -...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g---------~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~d 272 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN---------RTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAE 272 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---------CeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHH
Confidence 356889999999999999999987653211 12334444443321 1 111221 0000 01112
Q ss_pred HHHHHHHhhccCCCCceEEEEc--C--CCChHHHHhhhcccCC
Q psy4730 1422 LAKTFREMAVSTTPDRKWIMFD--G--PIDAVWIENMNTVLDD 1460 (1513)
Q Consensus 1422 l~~~lR~~~~~~~~~~~WivfD--G--~~d~~wiE~LNsvLDd 1460 (1513)
+..+++.... ......|+.| | |.|..+++-|..+++.
T Consensus 273 L~~al~~l~~--~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~ 313 (407)
T PRK12726 273 LEEAVQYMTY--VNCVDHILIDTVGRNYLAEESVSEISAYTDV 313 (407)
T ss_pred HHHHHHHHHh--cCCCCEEEEECCCCCccCHHHHHHHHHHhhc
Confidence 2333433321 1235899999 3 4688999999888764
No 395
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.04 E-value=0.085 Score=62.71 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=27.8
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
|..++..+..++++|+|||||||+.+.|+..+
T Consensus 141 L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 141 IIAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 45567788899999999999999999998765
No 396
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.02 E-value=0.058 Score=58.04 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.7
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...|+|+|+|||||||+.+.|++.++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999875
No 397
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.99 E-value=0.064 Score=56.50 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.9
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.|+|+|++||||||+.+.|++.++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 379999999999999999998875
No 398
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=92.98 E-value=0.076 Score=62.65 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.7
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..|+|+||||||||++...|++.++
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~ 29 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLN 29 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCC
Confidence 4789999999999999999998865
No 399
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.95 E-value=0.77 Score=59.53 Aligned_cols=44 Identities=11% Similarity=0.213 Sum_probs=32.4
Q ss_pred eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
+.||.+++. ...+.+.+.+|+..+.+..++..++..+...+...
T Consensus 151 tv~Il~t~~-~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~ 194 (585)
T PRK14950 151 AIFILATTE-VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAA 194 (585)
T ss_pred eEEEEEeCC-hhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH
Confidence 344444432 34577889999999999999999988888876543
No 400
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.94 E-value=0.05 Score=58.14 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+|+||+||||||+.+.|+..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999998864
No 401
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.94 E-value=0.084 Score=63.27 Aligned_cols=39 Identities=26% Similarity=0.515 Sum_probs=34.2
Q ss_pred hHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCc
Q psy4730 717 MQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSK 755 (1513)
Q Consensus 717 ~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~ 755 (1513)
....++..+++.+++++++||||||||+++..++..++.
T Consensus 150 ~~~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 150 DLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 356789999999999999999999999999999876643
No 402
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.93 E-value=0.064 Score=55.68 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEeccCCCCchHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
|.|+|||||||||+.+.|++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998764
No 403
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=92.92 E-value=0.19 Score=60.68 Aligned_cols=70 Identities=19% Similarity=0.335 Sum_probs=44.9
Q ss_pred HHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCC-hhhhcc--ceEeecCC
Q psy4730 889 MILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTIT-GRLLRH--MNIISIDS 962 (1513)
Q Consensus 889 ~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~-~r~~~~--f~~~~~~~ 962 (1513)
+|+|++. ||. +..|-|=.++|+|.+.-.+. ......|+.+++|.+-. +.-+. .-|++| +..+.+|+
T Consensus 177 LfLDEI~~LP~-------~~Q~kLl~~le~g~~~rvG~-~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPp 248 (403)
T COG1221 177 LFLDEIHRLPP-------EGQEKLLRVLEEGEYRRVGG-SQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPP 248 (403)
T ss_pred EehhhhhhCCH-------hHHHHHHHHHHcCceEecCC-CCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCC
Confidence 5678887 554 34677778888888876665 55666799999998875 22222 244443 34455655
Q ss_pred CChH
Q psy4730 963 FNEA 966 (1513)
Q Consensus 963 ~~~~ 966 (1513)
....
T Consensus 249 LrER 252 (403)
T COG1221 249 LRER 252 (403)
T ss_pred hhhc
Confidence 5444
No 404
>PHA02624 large T antigen; Provisional
Probab=92.89 E-value=0.34 Score=61.05 Aligned_cols=60 Identities=17% Similarity=0.084 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCccc--cHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1317 ELIEQIKINLAKRNAQA--TDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1317 ~l~~~i~~~~~~~~l~~--~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.+..-++-++--.++.+ ...|..-+-.+..-+-.++.+++.||+||||||+...|++.++
T Consensus 395 ~i~~fl~gv~~~q~l~~~~~~~~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~ 456 (647)
T PHA02624 395 DILQYMAGVAWLHCLLPNFDDVIYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCG 456 (647)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 33444443333555552 2344444444444456678999999999999999999999884
No 405
>PRK13764 ATPase; Provisional
Probab=92.87 E-value=0.24 Score=63.22 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.6
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
..+.+|++.|||||||||+.+.|+..+..
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45789999999999999999999988763
No 406
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.83 E-value=0.079 Score=60.38 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=24.8
Q ss_pred EeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC
Q psy4730 1356 VVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT 1402 (1513)
Q Consensus 1356 lvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t 1402 (1513)
++||+||||||.++.+.+.+...+. ++.+.=++|.+-.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~---------~~~~vNLDPa~~~ 38 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGR---------DVYIVNLDPAVEN 38 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S----------EEEEE--TT-S-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccC---------CceEEEcchHhcc
Confidence 5899999999999999998876432 2444555666553
No 407
>PRK14531 adenylate kinase; Provisional
Probab=92.77 E-value=0.076 Score=58.06 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+++|+|||||||..+.|++.++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999998875
No 408
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.77 E-value=0.55 Score=52.75 Aligned_cols=81 Identities=7% Similarity=0.144 Sum_probs=40.1
Q ss_pred HHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEee-cCC----CCCCChhhhccceEeecCC
Q psy4730 888 EMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAM-IPT----MNTITGRLLRHMNIISIDS 962 (1513)
Q Consensus 888 ~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~-~~~----~~~~~~r~~~~f~~~~~~~ 962 (1513)
.+++||+.............+..|+.++++..- -.++.++.+. ..+ -..-.+.+..++..+.+++
T Consensus 121 iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (234)
T PF01637_consen 121 IIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS----------QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKP 190 (234)
T ss_dssp EEEEETGGGGGBCTTTTHHHHHHHHHHHHH--------------TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE--
T ss_pred EEEEecHHHHhhcccchHHHHHHHHHHHhhccc----------cCCceEEEECCchHHHHHhhcccCccccccceEEEee
Confidence 356688885542112334556777777765111 1123333222 221 1244555777888899999
Q ss_pred CChHHHHHHHHHHhhh
Q psy4730 963 FNEATLSKIFTSVLDW 978 (1513)
Q Consensus 963 ~~~~~l~~i~~~~l~~ 978 (1513)
.+.++...++...+..
T Consensus 191 l~~~e~~~~~~~~~~~ 206 (234)
T PF01637_consen 191 LSKEEAREFLKELFKE 206 (234)
T ss_dssp --HHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999998888886543
No 409
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.75 E-value=0.72 Score=56.53 Aligned_cols=37 Identities=5% Similarity=0.169 Sum_probs=28.9
Q ss_pred EEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHH
Q psy4730 935 IYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFT 973 (1513)
Q Consensus 935 ~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~ 973 (1513)
.+++|.+| ..+.|-+++|+..+++.+|+.+.+.....
T Consensus 150 fIL~a~~~--~~llpTIrSRc~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 150 WLLCAPSP--EDVLPTIRSRCRHVALRTPSVEAVAEVLV 186 (394)
T ss_pred EEEEECCh--HHChHHHHhhCeEEECCCCCHHHHHHHHH
Confidence 44455553 56789999999999999999998776665
No 410
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=92.73 E-value=0.19 Score=60.28 Aligned_cols=138 Identities=21% Similarity=0.278 Sum_probs=88.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccc------------------------cceeEEEe-cCCCCChhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKE------------------------FKTGYKII-NPKSITMGQL 1406 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~------------------------~~~~~~~i-np~~~t~~eL 1406 (1513)
-||+|-|+-|.||||+.+.|+..|-...........| ....+..+ -|-.-|-+-+
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 4999999999999999999998876543211110010 01111223 3444444459
Q ss_pred cccccCCC------CCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCC
Q psy4730 1407 YGEFDSAS------HEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTM 1478 (1513)
Q Consensus 1407 ~G~~~~~t------~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~ 1478 (1513)
.|++|+.. ..++-|+|.++=| -.+-+| +.+|+.....|-.++.....-.=..|-.|..|-++
T Consensus 119 vGslDi~ka~~~g~~af~PGlLa~AnR----------GIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~f 188 (423)
T COG1239 119 VGSLDIEKALEEGPKAFQPGLLARANR----------GILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARF 188 (423)
T ss_pred ccccCHHHHHhcCccccCCcchhhccC----------CEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccE
Confidence 99999732 2377777766544 567779 78899888888888877655555678888877664
Q ss_pred eEEEeecCC--CCCCcchhhccEE
Q psy4730 1479 NLIFECENL--EFASPATVSRVGM 1500 (1513)
Q Consensus 1479 ~~iFE~~~l--~~asPatvsRcg~ 1500 (1513)
- +.-|.|- ....|-..-|.|+
T Consensus 189 v-ligTmNPEeGeLrpqLlDRfg~ 211 (423)
T COG1239 189 L-LIGTMNPEEGELRPQLLDRFGL 211 (423)
T ss_pred E-EEeecCccccccchhhHhhhcc
Confidence 4 4445444 3355666666655
No 411
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=92.68 E-value=0.64 Score=54.74 Aligned_cols=128 Identities=9% Similarity=0.156 Sum_probs=76.9
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
+..|+.+++|+.|.||++..+.+++++.-..... ...+..+-.+..++| .+.. .+ ..-+|+
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~-~~~~~~p~n~~~~d~--------------~g~~--i~--vd~Ir~ 76 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITN-LNEQELPANIILFDI--------------FDKD--LS--KSEFLS 76 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC-CCCCCCCcceEEecc--------------CCCc--CC--HHHHHH
Confidence 4578999999999999999999998874211000 000000112222221 1100 11 233444
Q ss_pred hhc----cC--CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEE
Q psy4730 1429 MAV----ST--TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIY 1502 (1513)
Q Consensus 1429 ~~~----~~--~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~ 1502 (1513)
.+. .+ .+.++-+|+|+. |..-.++.|++|. +|-+ .|+++.+||-+++....-|+-.|||-+|.
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~-e~m~~~a~NaLLK-----~LEE-----Pp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNI-EKTSNSLLNALLK-----TIEE-----PPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred HHHHhccCCcccCCceEEEEecc-cccCHHHHHHHHH-----HhhC-----CCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 432 22 147889999983 3333455565552 1111 57888899988888888888899999999
Q ss_pred eeCC
Q psy4730 1503 FELK 1506 (1513)
Q Consensus 1503 ~~~~ 1506 (1513)
|.+-
T Consensus 146 f~~l 149 (299)
T PRK07132 146 VKEP 149 (299)
T ss_pred CCCC
Confidence 8764
No 412
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.67 E-value=0.13 Score=59.66 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=24.7
Q ss_pred HHHHHHhcc-eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1344 VYEMILVRH-GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1344 L~~~~~~~~-gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
+...+..+. -++|+||+|+||||+++.+++.+.
T Consensus 35 l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 35 LEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 333344444 588999999999999999976654
No 413
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.62 E-value=0.076 Score=57.65 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.6
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|+|||||||||..+.|++.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998854
No 414
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=92.60 E-value=0.17 Score=56.31 Aligned_cols=51 Identities=27% Similarity=0.287 Sum_probs=33.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccc
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYG 1408 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G 1408 (1513)
...+++.|.||||||++++.++..+-... ....++++.++|+......+-+
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~-------~p~~~~l~iiD~k~~~l~~~~~ 88 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTY-------SPDDVQLYIIDPKGSDLAPLAD 88 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT---------TTTEEEEEE-TTSSCCGGGTT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHh-------cCCccEEEEEcCCccccchhhh
Confidence 34799999999999999998877764311 1124889999999766555433
No 415
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.60 E-value=0.19 Score=55.59 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=51.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEe--------------cCCCCChhhccccccCCCCC
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKII--------------NPKSITMGQLYGEFDSASHE 1416 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~i--------------np~~~t~~eL~G~~~~~t~e 1416 (1513)
++.++|.|++|||||++++.+.+++..-+ ..+..+ ...+.|...+++.......+
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-----------~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAG-----------KRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDE 86 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT-------------EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCC-----------CeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCccccc
Confidence 34678889999999999999988877521 111221 23344444444443321111
Q ss_pred CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCC--CCceeecC
Q psy4730 1417 WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDD--NKKLCLIN 1468 (1513)
Q Consensus 1417 W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDd--n~~L~L~n 1468 (1513)
+..- .....++|.| +-+|+.-++.|-..... -|.+++.+
T Consensus 87 ~~~~-------------~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD 129 (196)
T PF13604_consen 87 GRPE-------------LPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGD 129 (196)
T ss_dssp SSCC--------------TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-
T ss_pred cccc-------------CCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECC
Confidence 0000 2334799999 77888777777776655 24555543
No 416
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.59 E-value=0.12 Score=54.72 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHHHHHHhcceEEEeccCCCCchHHHHHHHHH
Q psy4730 1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
+|.+.+.. +-++|+|+||+||||+++.|...
T Consensus 28 ~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 28 ELKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 34444444 89999999999999999999655
No 417
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.58 E-value=0.083 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEeccCCCCchHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
|+++|++||||||+++.|+.--
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999997543
No 418
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.57 E-value=0.078 Score=57.73 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=22.7
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..+.-.-+.|||||||||++++|.+..
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 456788899999999999999986554
No 419
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.54 E-value=0.79 Score=55.93 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.8
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-++++||+||||||++.-||..+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~ 248 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYF 248 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999997653
No 420
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.53 E-value=0.11 Score=63.05 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=23.4
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
++|+|+||||||||++.+.|++.++
T Consensus 48 ~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998875
No 421
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.52 E-value=0.36 Score=60.32 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=58.8
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhcc--cccc--CCCCCCccCHHH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLY--GEFD--SASHEWRDGILA 1423 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~--G~~~--~~t~eW~DG~l~ 1423 (1513)
....-|+|+||+|+||||+...|+..+..-... .+|-+...++--+. ..+|. |... +......++-+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~g-------kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~ 420 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAP-------RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLL 420 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHH
Confidence 345688999999999999999998765432110 12333333432222 12221 1110 011123445566
Q ss_pred HHHHHhhccCCCCceEEEEc--C--CCChHHHHhhh---cccCCCCceeecCC
Q psy4730 1424 KTFREMAVSTTPDRKWIMFD--G--PIDAVWIENMN---TVLDDNKKLCLING 1469 (1513)
Q Consensus 1424 ~~lR~~~~~~~~~~~WivfD--G--~~d~~wiE~LN---svLDdn~~L~L~nG 1469 (1513)
.++++.. ...+|+.| | +-|...++.|. ........|.++.+
T Consensus 421 ~aL~~l~-----~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAt 468 (559)
T PRK12727 421 DLLERLR-----DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPAN 468 (559)
T ss_pred HHHHHhc-----cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECC
Confidence 6666542 35899999 3 34666555443 33345566666543
No 422
>PRK02496 adk adenylate kinase; Provisional
Probab=92.51 E-value=0.08 Score=57.87 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
++++|+|||||||+.+.|++.++
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998875
No 423
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=92.51 E-value=1.3 Score=54.76 Aligned_cols=172 Identities=18% Similarity=0.231 Sum_probs=98.9
Q ss_pred chhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhhccCCCC
Q psy4730 712 TNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYG 791 (1513)
Q Consensus 712 t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~~~~~~ 791 (1513)
..........+...-..+-|||+.|++||||-++....=......+---..+|+.+-+ .+.+++-|.-.-+|-|=
T Consensus 147 S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip-----~~l~ESELFGhekGAFT 221 (464)
T COG2204 147 SPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP-----ENLLESELFGHEKGAFT 221 (464)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC-----HHHHHHHhhcccccCcC
Confidence 3444455666777788999999999999999887776644332222112344444444 45666666655555553
Q ss_pred CCCCceEEEEe--cccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHHHHHh
Q psy4730 792 PAMGKKYIVFI--AGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLA 869 (1513)
Q Consensus 792 ~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1513)
....++.=.|- .| |
T Consensus 222 GA~~~r~G~fE~A~G---------------------------------------G------------------------- 237 (464)
T COG2204 222 GAITRRIGRFEQANG---------------------------------------G------------------------- 237 (464)
T ss_pred CcccccCcceeEcCC---------------------------------------c-------------------------
Confidence 33222221111 00 0
Q ss_pred hhcccchhHHHHHHHHHHHHHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC-----
Q psy4730 870 KRNAQATDWYIEKIIQVYEMILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT----- 943 (1513)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~----- 943 (1513)
.+|+|++- ||-.- -.-|||-+.+ |.|.-.+... ..-.|+++|||++-+
T Consensus 238 ------------------TLfLDEI~~mpl~~------Q~kLLRvLqe-~~~~rvG~~~-~i~vdvRiIaaT~~dL~~~v 291 (464)
T COG2204 238 ------------------TLFLDEIGEMPLEL------QVKLLRVLQE-REFERVGGNK-PIKVDVRIIAATNRDLEEEV 291 (464)
T ss_pred ------------------eEEeeccccCCHHH------HHHHHHHHHc-CeeEecCCCc-ccceeeEEEeecCcCHHHHH
Confidence 13456665 44311 2356665554 3443333221 122499999999987
Q ss_pred -CCCCChhhhccceEeecCCCChH----HHHHHHHHHhhh
Q psy4730 944 -MNTITGRLLRHMNIISIDSFNEA----TLSKIFTSVLDW 978 (1513)
Q Consensus 944 -~~~~~~r~~~~f~~~~~~~~~~~----~l~~i~~~~l~~ 978 (1513)
....-.-|+-|.+++.+.=|.-. +|--++..++..
T Consensus 292 ~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~ 331 (464)
T COG2204 292 AAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKR 331 (464)
T ss_pred HcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHH
Confidence 45677788888899777766643 666666665544
No 424
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.50 E-value=0.65 Score=52.63 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=66.7
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCC---Ccc---CHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHE---WRD---GILAKTF 1426 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~e---W~D---G~l~~~l 1426 (1513)
-++++|++||||||++..|...+...= -.++.+-|. ..+++++++-|+--. =.| ..+.+..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f-----------~~I~l~t~~--~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k 81 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKF-----------DHIFLITPE--YNNEYYKYIWPDHIFKVFDKEELEYILIRQK 81 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccC-----------CEEEEEecC--CchhhhhhcchhhccccccHHHHHHHHHHHH
Confidence 688999999999999998876554310 234555552 234555544322100 011 1222222
Q ss_pred H---Hhhc----cCCCCceEEEEcCCCChHHHHhhhcccCCCCcee-ecCCCeeecCCCCeEEEeecCCCCCCcchhhcc
Q psy4730 1427 R---EMAV----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLC-LINGEIIKMSNTMNLIFECENLEFASPATVSRV 1498 (1513)
Q Consensus 1427 R---~~~~----~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~-L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRc 1498 (1513)
. +... .....+.-||||--.+. .. -++.... +.+|.. -++.++|=++.-.+.+|.+-+-+
T Consensus 82 ~~I~k~~~k~~~~k~~~~~LiIlDD~~~~-~~-------k~~~l~~~~~~gRH----~~is~i~l~Q~~~~lp~~iR~n~ 149 (241)
T PF04665_consen 82 EKIEKYIKKSPQKKNNPRFLIILDDLGDK-KL-------KSKILRQFFNNGRH----YNISIIFLSQSYFHLPPNIRSNI 149 (241)
T ss_pred HHHHHHhhhhcccCCCCCeEEEEeCCCCc-hh-------hhHHHHHHHhcccc----cceEEEEEeeecccCCHHHhhcc
Confidence 2 1111 11244678999954331 11 0110111 124544 45899999999999988775555
Q ss_pred EEEE
Q psy4730 1499 GMIY 1502 (1513)
Q Consensus 1499 g~v~ 1502 (1513)
--+.
T Consensus 150 ~y~i 153 (241)
T PF04665_consen 150 DYFI 153 (241)
T ss_pred eEEE
Confidence 5444
No 425
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.49 E-value=0.48 Score=59.93 Aligned_cols=33 Identities=33% Similarity=0.351 Sum_probs=28.7
Q ss_pred CCCCCCCCCCccchHHHHHHhcCEEEEEEcCCC
Q psy4730 664 APEGPAGTGKTETSKDLAKAVAKQCIVFNCSDR 696 (1513)
Q Consensus 664 ~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~ 696 (1513)
.+.||+|+|||++|+-||+.+|..+..|.+...
T Consensus 49 lLtGP~G~GKtttv~~La~elg~~v~Ew~np~~ 81 (519)
T PF03215_consen 49 LLTGPSGCGKTTTVKVLAKELGFEVQEWINPVS 81 (519)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeeEEecCCCC
Confidence 347999999999999999999999999876543
No 426
>PRK13949 shikimate kinase; Provisional
Probab=92.47 E-value=0.081 Score=57.04 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=22.4
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.|+|+|++||||||+.+.|++.++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998876
No 427
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.46 E-value=0.11 Score=54.04 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHH
Q psy4730 1337 YIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1337 ~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
+..-.-|+.++...+.+|+|.|++||||+++.+.|...
T Consensus 7 ~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 7 MRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp HHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred HHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 33444567777788999999999999999998888754
No 428
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.40 E-value=0.72 Score=59.60 Aligned_cols=32 Identities=13% Similarity=0.338 Sum_probs=24.5
Q ss_pred CChhhhc--cceEeecCCCChHHHHHHHHHHhhh
Q psy4730 947 ITGRLLR--HMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 947 ~~~r~~~--~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
+.+.+++ +-.++.+++.+...|.+....++..
T Consensus 256 L~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~ 289 (637)
T TIGR00602 256 MNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTI 289 (637)
T ss_pred cCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHh
Confidence 3367776 4566999999999988888887764
No 429
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=92.39 E-value=0.26 Score=59.01 Aligned_cols=249 Identities=21% Similarity=0.217 Sum_probs=0.0
Q ss_pred cCCccceeccCCCccchHhHHHHHhccCcC---cccceeeccccccChhHHHHHHHHHhhhhccCCCCCCCCceEEEEec
Q psy4730 727 QNDVPMMFVGPTGTGKSTIVLNLLLNLSKD---KYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIA 803 (1513)
Q Consensus 727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~---~~~~~~~~fs~~t~~~~~q~~i~~~~~~~~~~~~~~~~~~~~~~f~~ 803 (1513)
..+..+.|.|+=|||||++++.+...+..+ .+...+++--...........+...+...-...++....+......
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 96 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEKHFGSKKIKLYAKKK- 96 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHHHhcCccchhHHHhhh-
Q ss_pred ccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCc--------------------------------C
Q psy4730 804 GSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGI--------------------------------E 851 (1513)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~ 851 (1513)
..-.....-+.+..+...+.. .
T Consensus 97 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (325)
T PF07693_consen 97 --------------------------LKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLK 150 (325)
T ss_pred --------------------------hhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhh
Q ss_pred CCCCChhHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeee
Q psy4730 852 LPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDL 931 (1513)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~ 931 (1513)
-...+-+++...+...+.. .++++| +++||| |.+.+..+.|+|+.+-....+
T Consensus 151 ~~~~~~~~~~~~~~~~l~~----~~~~iV--------iiIDdL-----DR~~~~~i~~~l~~ik~~~~~----------- 202 (325)
T PF07693_consen 151 KLKKEVEELISKIKKKLKE----SKKRIV--------IIIDDL-----DRCSPEEIVELLEAIKLLLDF----------- 202 (325)
T ss_pred hhhHHHHHHHHHHHHhhhc----CCceEE--------EEEcch-----hcCCcHHHHHHHHHHHHhcCC-----------
Q ss_pred cceEEEEeecCC--CCCCChh-------------hhccceE-eecCCCChHHHHHHHHHHhhhhhhc-cchhHHHHHHHH
Q psy4730 932 VDIIYITAMIPT--MNTITGR-------------LLRHMNI-ISIDSFNEATLSKIFTSVLDWHFSK-GFADSIVKLSKN 994 (1513)
Q Consensus 932 ~~~~~~~a~~~~--~~~~~~r-------------~~~~f~~-~~~~~~~~~~l~~i~~~~l~~~~~~-~f~~~~~~~~~~ 994 (1513)
.++.|+.|+.+. .+.+..+ +-+-|.+ +.+|+|+..++.+.+...+...... .-......+...
T Consensus 203 ~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (325)
T PF07693_consen 203 PNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPSPSDLERYLNELLESLESETNESDDIETLSNS 282 (325)
T ss_pred CCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCCHHHHHHHHHHHHHHhhhccccccchhhhhhc
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhh
Q psy4730 995 IVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGL 1033 (1513)
Q Consensus 995 ~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~ 1033 (1513)
..+.....-..+...+...+ .+.-|+|++.|.+.-+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~---~~~~npR~ikr~iN~~ 318 (325)
T PF07693_consen 283 ASNENLRIDEILNDIIDSID---FSIGNPRDIKRFINSL 318 (325)
T ss_pred chhhhhhHHHHHHHHHHhhh---hcCCCHHHHHHHHHHH
No 430
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.38 E-value=0.08 Score=53.81 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=24.0
Q ss_pred CccceeccCCCccchHhHHHHHhccCcC
Q psy4730 729 DVPMMFVGPTGTGKSTIVLNLLLNLSKD 756 (1513)
Q Consensus 729 ~~~~ll~G~~g~GKt~~v~~~~~~~~~~ 756 (1513)
+..++|+||+|||||+++..++..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4678999999999999999998876543
No 431
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.37 E-value=0.096 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.8
Q ss_pred EEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
|.|.||||+|||++.+.|++.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999988875
No 432
>KOG0743|consensus
Probab=92.32 E-value=0.064 Score=64.55 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=24.0
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
++|=+|.|||||||||++.++|..|+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC
Confidence 57999999999999999999998875
No 433
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.31 E-value=0.12 Score=61.78 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCc
Q psy4730 718 QNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSK 755 (1513)
Q Consensus 718 ~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~ 755 (1513)
...++..++..+++++++|+||||||+++..++..++.
T Consensus 149 ~~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 149 IKEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 45688888999999999999999999999998876643
No 434
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.31 E-value=0.2 Score=60.18 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=55.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC-ChhhccccccCCCC----CCccCHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGEFDSASH----EWRDGILAKTF 1426 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~-t~~eL~G~~~~~t~----eW~DG~l~~~l 1426 (1513)
.-|+|+||+|+||||++..||..+..-+ ..+-+...+|--+ ..++|-.+-+...- .-.+.-+..++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~G---------kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL 312 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKK---------KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL 312 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcC---------CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHH
Confidence 5789999999999999999998765311 1233333333321 12222221110000 01223334444
Q ss_pred HHhhccCCCCceEEEEcC----CCChHHHHhhhcccC----CCCceeec
Q psy4730 1427 REMAVSTTPDRKWIMFDG----PIDAVWIENMNTVLD----DNKKLCLI 1467 (1513)
Q Consensus 1427 R~~~~~~~~~~~WivfDG----~~d~~wiE~LNsvLD----dn~~L~L~ 1467 (1513)
+.... ......|+.|. +-|..-++.|..+++ +...|+|+
T Consensus 313 ~~lk~--~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLs 359 (436)
T PRK11889 313 TYFKE--EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLS 359 (436)
T ss_pred HHHHh--ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEEC
Confidence 44321 11347899993 235556677776664 34566665
No 435
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.29 E-value=0.11 Score=57.40 Aligned_cols=27 Identities=33% Similarity=0.276 Sum_probs=23.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
+-+++|||||+||||.+--||..+..-
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 368999999999999999998887643
No 436
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.29 E-value=0.11 Score=65.40 Aligned_cols=123 Identities=11% Similarity=0.158 Sum_probs=66.3
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
..+++|.||+|+|||.+.+.++..+..-.. ...+..++...+ ..++.+.+.. +..........
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~---------~~~v~yi~~~~~-~~~~~~~~~~-------~~~~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNP---------NAKVVYVTSEKF-TNDFVNALRN-------NTMEEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCC---------CCeEEEEEHHHH-HHHHHHHHHc-------CcHHHHHHHHh
Confidence 358999999999999999999988754210 133444444433 3344443321 12222222111
Q ss_pred ccCCCCceEEEEcCC--C--Ch----HHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccE---
Q psy4730 1431 VSTTPDRKWIMFDGP--I--DA----VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG--- 1499 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG~--~--d~----~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg--- 1499 (1513)
....+++|.- + .. ...+-+|.+.+.++.+.+.+.- +| .+|....|+..||++
T Consensus 211 -----~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~----~p--------~~l~~l~~~l~SRl~~gl 273 (450)
T PRK00149 211 -----SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR----PP--------KELPGLEERLRSRFEWGL 273 (450)
T ss_pred -----cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC----CH--------HHHHHHHHHHHhHhcCCe
Confidence 2368999932 1 22 3445556666655443332211 11 224445688999994
Q ss_pred EEEeeCCC
Q psy4730 1500 MIYFELKC 1507 (1513)
Q Consensus 1500 ~v~~~~~~ 1507 (1513)
++.+.+-+
T Consensus 274 ~v~i~~pd 281 (450)
T PRK00149 274 TVDIEPPD 281 (450)
T ss_pred eEEecCCC
Confidence 45665544
No 437
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.29 E-value=0.41 Score=56.12 Aligned_cols=93 Identities=19% Similarity=0.163 Sum_probs=48.3
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCC----CCCccCH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSAS----HEWRDGI 1421 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t----~eW~DG~ 1421 (1513)
..+.|.|+|++|+||||+.+.++.... ... ....+-+.... +..+ ..++...+.... .....+.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~-~~~------~f~~v~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLR-IKN------RFDGVIWVSLS-KNPSLEQLLEQILRQLGEPDSSISDPKDIEE 89 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHH-HCC------CCTEEEEEEEE-S-SCCHHHHHHHHHHHTCC-STSSCCSSHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccc-ccc------ccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 467899999999999999988875533 111 01112222222 2222 223333333222 2334444
Q ss_pred HHHHHHHhhccCCCCceEEEEcCCCChHHHHh
Q psy4730 1422 LAKTFREMAVSTTPDRKWIMFDGPIDAVWIEN 1453 (1513)
Q Consensus 1422 l~~~lR~~~~~~~~~~~WivfDG~~d~~wiE~ 1453 (1513)
....+++... .++..+|||+--+...++.
T Consensus 90 ~~~~l~~~L~---~~~~LlVlDdv~~~~~~~~ 118 (287)
T PF00931_consen 90 LQDQLRELLK---DKRCLLVLDDVWDEEDLEE 118 (287)
T ss_dssp HHHHHHHHHC---CTSEEEEEEEE-SHHHH--
T ss_pred ccccchhhhc---cccceeeeeeecccccccc
Confidence 5555555433 3378899999777664433
No 438
>PRK13695 putative NTPase; Provisional
Probab=92.25 E-value=0.45 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.3
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|.|+|++||||||+.+.++..+.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999876654
No 439
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.23 E-value=0.1 Score=56.98 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=23.5
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
+++++|+||+||||||+.+.|.+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999988764
No 440
>PRK13947 shikimate kinase; Provisional
Probab=92.21 E-value=0.091 Score=56.57 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=22.3
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.|+|+|++||||||+.+.||+.++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999886
No 441
>PRK08116 hypothetical protein; Validated
Probab=92.17 E-value=0.12 Score=60.21 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=24.0
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
+.|++|.|++|+|||.+..+++..+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~ 140 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIE 140 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999888754
No 442
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=92.13 E-value=0.66 Score=54.25 Aligned_cols=137 Identities=17% Similarity=0.205 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-ccccc---------ccceeEEEecCCCCChhhcc
Q psy4730 1338 IEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMK---------EFKTGYKIINPKSITMGQLY 1407 (1513)
Q Consensus 1338 ~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~---------~~~~~~~~inp~~~t~~eL~ 1407 (1513)
+....+..+.-+..|+.+++|| .||+++...+|+++.-.+... .+++. +.+.+++.+.|..
T Consensus 11 ~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~------- 81 (290)
T PRK07276 11 FQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG------- 81 (290)
T ss_pred HHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC-------
Confidence 3333444444556789999996 689999999998886322111 11111 1234455555531
Q ss_pred ccccCCCCCCccCHHHHHHHHhh----ccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730 1408 GEFDSASHEWRDGILAKTFREMA----VST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus 1408 G~~~~~t~eW~DG~l~~~lR~~~----~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
. .+=..-+|+.. ..+ .+.++.+|+|+ +|..=.++-|++| |. | | ..|+++.+|+
T Consensus 82 -~----------~I~idqIR~l~~~~~~~p~~~~~kV~II~~-ad~m~~~AaNaLL---Kt--L---E--EPp~~t~~iL 139 (290)
T PRK07276 82 -Q----------VIKTDTIRELVKNFSQSGYEGKQQVFIIKD-ADKMHVNAANSLL---KV--I---E--EPQSEIYIFL 139 (290)
T ss_pred -C----------cCCHHHHHHHHHHHhhCcccCCcEEEEeeh-hhhcCHHHHHHHH---HH--h---c--CCCCCeEEEE
Confidence 0 01133445432 222 34678889885 3333345566665 11 1 1 1366788999
Q ss_pred eecCCCCCCcchhhccEEEEeeC
Q psy4730 1483 ECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1483 E~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
-+.+....-|.-+|||-.|+|.+
T Consensus 140 ~t~~~~~lLpTI~SRcq~i~f~~ 162 (290)
T PRK07276 140 LTNDENKVLPTIKSRTQIFHFPK 162 (290)
T ss_pred EECChhhCchHHHHcceeeeCCC
Confidence 99999999999999999999966
No 443
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=92.12 E-value=0.92 Score=55.48 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=48.9
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhh
Q psy4730 706 SDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRR 785 (1513)
Q Consensus 706 ~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~ 785 (1513)
.++|=...-.......++..-..+-+||++|+|||||-.+.+..=+..+..+--...+|+.+-- ...+++-|--.
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP-----esLlESELFGH 297 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP-----ESLLESELFGH 297 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc-----hHHHHHHHhcc
Confidence 3444434444455556677789999999999999999887776544333222223456665543 33556666555
Q ss_pred ccCCC
Q psy4730 786 RKGVY 790 (1513)
Q Consensus 786 ~~~~~ 790 (1513)
.||-|
T Consensus 298 eKGAF 302 (550)
T COG3604 298 EKGAF 302 (550)
T ss_pred ccccc
Confidence 55544
No 444
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.12 E-value=0.097 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=21.2
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|.|.|++||||||+.+.|++.++
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998875
No 445
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.10 E-value=0.12 Score=52.26 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=29.1
Q ss_pred HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.|.+.+....-|+|.|+-|+||||++|.++++++.
T Consensus 7 ~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 7 KLAQILKPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp HHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred HHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45566677889999999999999999999999864
No 446
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.05 E-value=0.14 Score=56.05 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=32.3
Q ss_pred hHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730 717 MQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS 754 (1513)
Q Consensus 717 ~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~ 754 (1513)
....++...+..+..++++||+|+|||++++.++..++
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 35567888899999999999999999999988776543
No 447
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.00 E-value=0.06 Score=60.07 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.5
Q ss_pred hcceEEEeccCCCCchHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
....++|+||+||||||+++.|.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4568999999999999999999754
No 448
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=91.98 E-value=2 Score=54.13 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730 717 MQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 717 ~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
.....+..+...+.|+++.|++||||+++....-...
T Consensus 154 ~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s 190 (457)
T PRK11361 154 DICKDTAKIALSQASVLISGESGTGKELIARAIHYNS 190 (457)
T ss_pred HHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhC
Confidence 3444555667788999999999999999998775543
No 449
>PF05729 NACHT: NACHT domain
Probab=91.92 E-value=0.13 Score=54.44 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=22.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
+.++|+|++|+||||+++.++..+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh
Confidence 36899999999999999999887765
No 450
>KOG0480|consensus
Probab=91.91 E-value=0.55 Score=58.56 Aligned_cols=126 Identities=21% Similarity=0.315 Sum_probs=80.4
Q ss_pred CCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecC--C-CCCCCCCchhHH----
Q psy4730 1122 PGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNP--G-YAGRTELPDNLK---- 1194 (1513)
Q Consensus 1122 ~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp--~-y~gr~~LP~nLk---- 1194 (1513)
.+.-+|+|||+.++..- | .+|..|+.+..-++.-.|-.-.++-...|.+.-|| | |--.+.|-+|++
T Consensus 442 DnGICCIDEFDKMd~~d------q-vAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msAp 514 (764)
T KOG0480|consen 442 DNGICCIDEFDKMDVKD------Q-VAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAP 514 (764)
T ss_pred cCceEEechhcccChHh------H-HHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCch
Confidence 45567999999998621 1 23445554444344444566678888899999999 3 765567777764
Q ss_pred --hhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhhhhh
Q psy4730 1195 --VLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIK 1267 (1513)
Q Consensus 1195 --~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l~~~ 1267 (1513)
++|--+-+...|..- .....+|++|+.......+....+ .-|.++.++..+++|...+..
T Consensus 515 imSRFDL~FiLlD~~nE-----------~~D~~ia~hIld~h~~i~~~~~~~--~~~~~e~vrkYi~yAR~~~P~ 576 (764)
T KOG0480|consen 515 IMSRFDLFFILLDDCNE-----------VVDYAIARHILDLHRGIDDATERV--CVYTLEQVRKYIRYARNFKPK 576 (764)
T ss_pred hhhhhcEEEEEecCCch-----------HHHHHHHHHHHHHhcccccccccc--ccccHHHHHHHHHHHHhcCcc
Confidence 444444444333321 234567888888766655544332 467889999999998865543
No 451
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=91.89 E-value=1.1 Score=59.27 Aligned_cols=115 Identities=13% Similarity=0.139 Sum_probs=66.9
Q ss_pred HHcCccccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEec---------
Q psy4730 1327 AKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIIN--------- 1397 (1513)
Q Consensus 1327 ~~~~l~~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~in--------- 1397 (1513)
...+...++....-+..+ ..+.-++|.|+|||||||+++.+.+++....+. ..+....
T Consensus 318 ~~~~~~l~~~Q~~Ai~~~----~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~---------~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 318 KKLRKGLSEEQKQALDTA----IQHKVVILTGGPGTGKTTITRAIIELAEELGGL---------LPVGLAAPTGRAAKRL 384 (720)
T ss_pred HhcCCCCCHHHHHHHHHH----HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC---------ceEEEEeCchHHHHHH
Confidence 344566666655544433 245689999999999999999999888764310 1112222
Q ss_pred -----CCCCChhhccccccCCCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCC-Cceee
Q psy4730 1398 -----PKSITMGQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDN-KKLCL 1466 (1513)
Q Consensus 1398 -----p~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn-~~L~L 1466 (1513)
-.+.|...++|.. +.. .... ..........+|.| +-+|......|-+.+.++ +.+.+
T Consensus 385 ~e~~g~~a~Tih~lL~~~-~~~------~~~~-----~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rlilv 449 (720)
T TIGR01448 385 GEVTGLTASTIHRLLGYG-PDT------FRHN-----HLEDPIDCDLLIVDESSMMDTWLALSLLAALPDHARLLLV 449 (720)
T ss_pred HHhcCCccccHHHHhhcc-CCc------cchh-----hhhccccCCEEEEeccccCCHHHHHHHHHhCCCCCEEEEE
Confidence 2345555666532 111 0000 01112345789999 788988888877766544 44443
No 452
>PHA02774 E1; Provisional
Probab=91.88 E-value=0.39 Score=60.25 Aligned_cols=89 Identities=20% Similarity=0.381 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCC
Q psy4730 1337 YIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHE 1416 (1513)
Q Consensus 1337 ~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~e 1416 (1513)
|+.....+..-.-.+.+++++||||+|||.+.-.|++.++ + ..+..+|- ..+-
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~---G----------~vi~fvN~--------------~s~F 472 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK---G----------KVISFVNS--------------KSHF 472 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC---C----------CEEEEEEC--------------cccc
Confidence 3333333333333456999999999999999999988874 1 11222342 2334
Q ss_pred CccCHHHHHHHHhhccCCCCceEEEEcCCCCh--HHHH-hhhcccCCCCceee
Q psy4730 1417 WRDGILAKTFREMAVSTTPDRKWIMFDGPIDA--VWIE-NMNTVLDDNKKLCL 1466 (1513)
Q Consensus 1417 W~DG~l~~~lR~~~~~~~~~~~WivfDG~~d~--~wiE-~LNsvLDdn~~L~L 1466 (1513)
| +... .+.+.+|+|-...+ .|++ .|-.+||.| .++|
T Consensus 473 w--------Lqpl-----~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~-~v~l 511 (613)
T PHA02774 473 W--------LQPL-----ADAKIALLDDATHPCWDYIDTYLRNALDGN-PVSI 511 (613)
T ss_pred c--------cchh-----ccCCEEEEecCcchHHHHHHHHHHHHcCCC-ccee
Confidence 5 1111 23388999976555 5666 899999988 4444
No 453
>PRK10436 hypothetical protein; Provisional
Probab=91.87 E-value=0.51 Score=58.89 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=22.8
Q ss_pred HHHHhcce-EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1346 EMILVRHG-LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1346 ~~~~~~~g-vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
+++...+| |++.|||||||||.+..+.+.++
T Consensus 212 ~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 212 QALQQPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred HHHHhcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 34444554 77999999999999877665554
No 454
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.84 E-value=0.11 Score=52.08 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=18.6
Q ss_pred EEEeccCCCCchHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~ 1373 (1513)
|+|+|+||+||||+++.|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999974
No 455
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.84 E-value=0.1 Score=60.75 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
|..++..+..|++.|+|||||||+++.|...+
T Consensus 120 l~~~v~~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 120 LRSAVRGRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp HHHCHHTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HhhccccceEEEEECCCccccchHHHHHhhhc
No 456
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.84 E-value=0.096 Score=55.09 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.7
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
++|.|+|||||||+.+.|++.++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 68999999999999999988754
No 457
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.84 E-value=0.2 Score=56.82 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.4
Q ss_pred EEEeccCCCCchHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
+++.|+|||||||.++-+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5789999999999999987664
No 458
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.83 E-value=0.72 Score=56.93 Aligned_cols=43 Identities=9% Similarity=0.222 Sum_probs=32.6
Q ss_pred eEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730 934 IIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 934 ~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
+.+|.++.. ...+.+.+.+|..++.+.+++.+++......++.
T Consensus 158 t~~Il~t~~-~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~ 200 (397)
T PRK14955 158 AIFIFATTE-LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICE 200 (397)
T ss_pred eEEEEEeCC-hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 344444432 3577888999999999999999999888777654
No 459
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.82 E-value=0.14 Score=55.57 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=19.6
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.+.++|+|++|+|||++++.+...+..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999988777665
No 460
>PRK00625 shikimate kinase; Provisional
Probab=91.80 E-value=0.11 Score=56.22 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=22.1
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|+|.|||||||+.+.|++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998875
No 461
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.74 E-value=0.36 Score=51.29 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=37.3
Q ss_pred HHHHHhcCEEEEEEcCCCCCCCCCCCCccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhc
Q psy4730 679 DLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLN 752 (1513)
Q Consensus 679 ~La~~lG~~~~v~ncs~~~~f~~~~~~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~ 752 (1513)
+.-+.+|.+++..+..+... ..-+..+++. +.++|+|++|+|||++++.++..
T Consensus 6 ~~y~~~gy~v~~~S~~~~~g--------------------~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 6 EQYEKLGYPVFFISAKTGEG--------------------IEELKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHTTSEEEE-BTTTTTT--------------------HHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHcCCcEEEEeCCCCcC--------------------HHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 44457888877777654433 1223444555 99999999999999999988764
No 462
>PRK06547 hypothetical protein; Provisional
Probab=91.71 E-value=0.11 Score=56.14 Aligned_cols=26 Identities=31% Similarity=0.242 Sum_probs=21.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-|+|.|++||||||+.+.|++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34677779999999999999998754
No 463
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=91.69 E-value=0.083 Score=61.24 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.0
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
=|+|+|-|||||||..+-|++.+..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 4899999999999999999998876
No 464
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.63 E-value=0.11 Score=54.20 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.0
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
...-+.|.||+||||||+.++++...
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34578999999999999999998554
No 465
>PRK15115 response regulator GlrR; Provisional
Probab=91.61 E-value=2.6 Score=52.84 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceEeecCCCChH----HHHHHHHHHhhh
Q psy4730 909 ELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNIISIDSFNEA----TLSKIFTSVLDW 978 (1513)
Q Consensus 909 e~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~~~~~~~~~~----~l~~i~~~~l~~ 978 (1513)
+-|-.+++.|.+.-.+.. ...-.|+.+|++++.+ +..+.+.++.+++.+.+.=|+-. ++..+...++..
T Consensus 246 ~~L~~~l~~~~~~~~g~~-~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~ 324 (444)
T PRK15115 246 VKLLRVLQERKVRPLGSN-RDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQ 324 (444)
T ss_pred HHHHHHHhhCCEEeCCCC-ceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHH
Confidence 444555665655332222 2233489999998875 45788888999887666666543 555555555543
Q ss_pred hhhc------cchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhhcccCCcccCChh
Q psy4730 979 HFSK------GFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASHCKAPD 1045 (1513)
Q Consensus 979 ~~~~------~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~~~~~~~~~~~~~ 1045 (1513)
+-.+ ++.++.. +.. ...+|-=|+|.|.++++-..........+..
T Consensus 325 ~~~~~~~~~~~~~~~a~-----------~~L-----------~~~~WpgNvreL~~~i~~~~~~~~~~~i~~~ 375 (444)
T PRK15115 325 AAERHKPFVRAFSTDAM-----------KRL-----------MTASWPGNVRQLVNVIEQCVALTSSPVISDA 375 (444)
T ss_pred HHHHhCCCCCCcCHHHH-----------HHH-----------HhCCCCChHHHHHHHHHHHHHhCCCCccChh
Confidence 2110 1222111 111 2345556999999999876554333333333
No 466
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.61 E-value=0.097 Score=58.21 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=23.1
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...-|.|+|||||||||+.+.|+..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345789999999999999999988653
No 467
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.61 E-value=0.11 Score=65.29 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.7
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
...|++|+||||||||++.+.++..+..
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 4569999999999999999999988753
No 468
>KOG0735|consensus
Probab=91.60 E-value=0.63 Score=58.64 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=24.0
Q ss_pred hcCCccceeccCCCccchHhHHHHHhcc
Q psy4730 726 LQNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
+.....+||.||||||||.++.....+.
T Consensus 698 lr~~~giLLyGppGcGKT~la~a~a~~~ 725 (952)
T KOG0735|consen 698 LRLRTGILLYGPPGCGKTLLASAIASNS 725 (952)
T ss_pred cccccceEEECCCCCcHHHHHHHHHhhC
Confidence 5667889999999999999999887653
No 469
>PRK14528 adenylate kinase; Provisional
Probab=91.59 E-value=0.12 Score=56.72 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.7
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|++.|||||||||+.+.|++.++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998774
No 470
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.54 E-value=0.11 Score=56.29 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..++|+||+||||||+.+.|++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 468999999999999999998754
No 471
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=91.54 E-value=0.11 Score=54.73 Aligned_cols=84 Identities=20% Similarity=0.255 Sum_probs=48.0
Q ss_pred EeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC--------C--hhhccccccCCCCCC-ccCHHHH
Q psy4730 1356 VVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI--------T--MGQLYGEFDSASHEW-RDGILAK 1424 (1513)
Q Consensus 1356 lvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~--------t--~~eL~G~~~~~t~eW-~DG~l~~ 1424 (1513)
|+|||||||||+.+.|++.++- .+|++..+ | -.++-..++ .++. -|.++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~----------------~~is~~~llr~~~~~~s~~g~~i~~~l~--~g~~vp~~~v~~ 62 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL----------------VHISVGDLLREEIKSDSELGKQIQEYLD--NGELVPDELVIE 62 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS----------------EEEEHHHHHHHHHHTTSHHHHHHHHHHH--TTSS--HHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc----------------ceechHHHHHHHHhhhhHHHHHHHHHHH--hhccchHHHHHH
Confidence 6899999999999999988753 11211110 1 111111222 2232 3556677
Q ss_pred HHHHhhccCCCCceEEEEcC-CCChHHHHhhhccc
Q psy4730 1425 TFREMAVSTTPDRKWIMFDG-PIDAVWIENMNTVL 1458 (1513)
Q Consensus 1425 ~lR~~~~~~~~~~~WivfDG-~~d~~wiE~LNsvL 1458 (1513)
++++........ +-+|+|| |-...-++.|..++
T Consensus 63 ll~~~l~~~~~~-~g~ildGfPrt~~Qa~~l~~~~ 96 (151)
T PF00406_consen 63 LLKERLEQPPCN-RGFILDGFPRTLEQAEALEEIL 96 (151)
T ss_dssp HHHHHHHSGGTT-TEEEEESB-SSHHHHHHHHHHH
T ss_pred HHHHHHhhhccc-ceeeeeeccccHHHHHHHHHHH
Confidence 776654444334 4456888 77777788777655
No 472
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=91.53 E-value=0.1 Score=53.20 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=33.3
Q ss_pred cCCccceeccCCCccchHhHHHHHhccCcC-----cccceeeccccccChhHHHHHHHHHhhh
Q psy4730 727 QNDVPMMFVGPTGTGKSTIVLNLLLNLSKD-----KYLPNIINFSARTSSNITQEMIMAKLDR 784 (1513)
Q Consensus 727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~-----~~~~~~~~fs~~t~~~~~q~~i~~~~~~ 784 (1513)
+.+..+++.||+|+|||+++.++++.+... .....+++.....+...+...+...+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 64 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGL 64 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCc
Confidence 345678999999999999999999876421 2222345555555555555555555433
No 473
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.53 E-value=0.13 Score=55.79 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.3
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|.|+|||||||+.+.|++.+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4689999999999999999988764
No 474
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.51 E-value=0.45 Score=56.64 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=23.8
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
..-++++||+|+||||++..||..+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 357899999999999999999988764
No 475
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=91.50 E-value=0.34 Score=54.37 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.3
Q ss_pred cceEEEeccCCCCchHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
.+-++++|+||+||||+.+.|+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4579999999999999988874
No 476
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.48 E-value=0.22 Score=51.22 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCc
Q psy4730 714 VTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSK 755 (1513)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~ 755 (1513)
+|......+...+..+..++|.|+.|+|||++++.+...+..
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 455666667777888999999999999999999999988754
No 477
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=91.47 E-value=0.13 Score=55.61 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=55.6
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEe---cCCCCChhhccccccCCCCCCccCHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKII---NPKSITMGQLYGEFDSASHEWRDGILAKTF 1426 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~i---np~~~t~~eL~G~~~~~t~eW~DG~l~~~l 1426 (1513)
.++.|+|+||+|||||+++..|..- .... ..+++ .+...+.+ ..+.+.+=++=|.- .-+..++..+.
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~--~~~~-T~tS~--e~n~~~~~~~~~~~~~~lvD~PGH~-----rlr~~~~~~~~ 71 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNG--KTVP-TVTSM--ENNIAYNVNNSKGKKLRLVDIPGHP-----RLRSKLLDELK 71 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHS--S----B---S--SEEEECCGSSTCGTCECEEEETT-H-----CCCHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcC--CcCC-eeccc--cCCceEEeecCCCCEEEEEECCCcH-----HHHHHHHHhhh
Confidence 3678999999999999999998643 1000 00111 01111111 12222222222321 12333333211
Q ss_pred HHhhccCCCCceEEEEcCCCCh----HHHHhhhcccCCCCceeecCCCeeecCCCCeEEE--eecCCCCCCcchhh
Q psy4730 1427 REMAVSTTPDRKWIMFDGPIDA----VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF--ECENLEFASPATVS 1496 (1513)
Q Consensus 1427 R~~~~~~~~~~~WivfDG~~d~----~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF--E~~~l~~asPatvs 1496 (1513)
.....+.--+|.|+-.++ +..|.|-.+|-+.... +..+.+++ -=+|+..|-|+..-
T Consensus 72 ----~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~----------~~~~piLIacNK~Dl~~A~~~~~I 133 (181)
T PF09439_consen 72 ----YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQ----------KNKPPILIACNKQDLFTAKPPKKI 133 (181)
T ss_dssp ----HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCC----------TT--EEEEEEE-TTSTT---HHHH
T ss_pred ----chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhc----------cCCCCEEEEEeCccccccCCHHHH
Confidence 111233467888986543 4788888888543211 23344444 44888888777653
No 478
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=91.46 E-value=4.6 Score=50.99 Aligned_cols=114 Identities=11% Similarity=0.172 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceE--eecCCCC--hHHHHHHHHHHhhh
Q psy4730 909 ELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNI--ISIDSFN--EATLSKIFTSVLDW 978 (1513)
Q Consensus 909 e~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~--~~~~~~~--~~~l~~i~~~~l~~ 978 (1513)
.-|.++++.|.+...+.. ...-.|+.+|++++.+ ...+.+.|+.|++. +.+++.. .+++..+...++..
T Consensus 246 ~~ll~~l~~~~~~~~~~~-~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~ 324 (463)
T TIGR01818 246 TRLLRVLADGEFYRVGGR-TPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLAL 324 (463)
T ss_pred HHHHHHHhcCcEEECCCC-ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHH
Confidence 334444555554432322 1223488999999876 34566778887775 5555555 45777777776654
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhhcccCCc
Q psy4730 979 HFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPAS 1039 (1513)
Q Consensus 979 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~~~~~~~ 1039 (1513)
+- ..+...+.. +...+++.. ...||-=|+|.|.+++.-.......
T Consensus 325 ~~-~~~~~~~~~----~~~~a~~~L-----------~~~~wpgNvreL~~~~~~~~~~~~~ 369 (463)
T TIGR01818 325 AA-RELDVEPKL----LDPEALERL-----------KQLRWPGNVRQLENLCRWLTVMASG 369 (463)
T ss_pred HH-HHhCCCCCC----cCHHHHHHH-----------HhCCCCChHHHHHHHHHHHHHhCCC
Confidence 31 111100000 111111111 2346667999999999876654333
No 479
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.43 E-value=0.12 Score=57.80 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=21.2
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
...-+.++|||||||||+.++..+.+
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhccc
Confidence 45578899999999999999875443
No 480
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.41 E-value=0.13 Score=56.86 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEeccCCCCchHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
|.|.||+||||||+.+.|+..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999887
No 481
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=91.41 E-value=0.11 Score=63.37 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.0
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..||+|+||||||||++.+.++..++
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCC
Confidence 46899999999999999999987654
No 482
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.38 E-value=0.22 Score=56.38 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.8
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...+++|.||+|||||++.+.++....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999988754
No 483
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=91.38 E-value=0.68 Score=57.11 Aligned_cols=42 Identities=29% Similarity=0.338 Sum_probs=31.3
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT 1402 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t 1402 (1513)
..++|.||||+|||++++.+++.+.... ..+.+..+|+...+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~---------~~~~~v~in~~~~~ 97 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIA---------VKVVYVYINCQIDR 97 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhc---------CCcEEEEEECCcCC
Confidence 4699999999999999999988775422 12556677776554
No 484
>PRK05541 adenylylsulfate kinase; Provisional
Probab=91.38 E-value=0.12 Score=56.11 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=24.6
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
+...-|+++|++||||||+.+.|++.+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34457899999999999999999988763
No 485
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=91.33 E-value=1.9 Score=55.59 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=59.8
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhh------c-ccccc----------c--------ceeEEEecCCCCChhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKK------S-ATMKE----------F--------KTGYKIINPKSITMGQ 1405 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~------~-~~~~~----------~--------~~~~~~inp~~~t~~e 1405 (1513)
++-.+|.|+||+||||++..+..++....... . ++++. . ......+.-.+.|...
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHr 239 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHR 239 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhhh
Confidence 67889999999999999998877775432210 0 00000 0 0000112335777788
Q ss_pred ccccccCCCCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCC-Cceee
Q psy4730 1406 LYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDN-KKLCL 1466 (1513)
Q Consensus 1406 L~G~~~~~t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn-~~L~L 1466 (1513)
|+|.. +.+.. ++.. .........+|.| +-+|..-+..|-+.+.++ |.+.+
T Consensus 240 lLg~~-~~~~~---------~~~~-~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIlv 292 (586)
T TIGR01447 240 LLGIK-PDTKR---------FRHH-ERNPLPLDVLVVDEASMVDLPLMAKLLKALPPNTKLILL 292 (586)
T ss_pred hhccc-CCcch---------hhhc-ccCCCcccEEEEcccccCCHHHHHHHHHhcCCCCEEEEE
Confidence 88853 22211 1211 1112345799999 778888777777766555 54444
No 486
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=91.32 E-value=0.13 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.6
Q ss_pred EEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
|-+-|||||||||+-+.||+.++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCC
Confidence 678899999999999999998763
No 487
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.31 E-value=0.14 Score=57.31 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=22.6
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-|.|.|++||||||+.+.|++.+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999887
No 488
>PLN02165 adenylate isopentenyltransferase
Probab=91.18 E-value=0.17 Score=59.87 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=22.3
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.|.|+||||||||++...||+.++
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcC
Confidence 699999999999999999998875
No 489
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=91.15 E-value=0.55 Score=58.98 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=26.1
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
.+.-+.|+||||+||||+.+.|++++...
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 45689999999999999999999999874
No 490
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.12 E-value=0.16 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.4
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+++|+|||||||+.+.|++.+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998875
No 491
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.10 E-value=0.14 Score=54.58 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=24.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
..|+|+|+.|+||||+=+.||++++.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 46899999999999999999999874
No 492
>PLN02200 adenylate kinase family protein
Probab=91.08 E-value=0.14 Score=58.33 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.3
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|+|+|||||||+.+.|++.++
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998775
No 493
>PRK04040 adenylate kinase; Provisional
Probab=91.07 E-value=0.15 Score=55.89 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=21.8
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|+|.|||||||+.+.|++.+.
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999998874
No 494
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=91.04 E-value=0.61 Score=58.56 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=73.5
Q ss_pred HHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCc---
Q psy4730 1346 EMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWR--- 1418 (1513)
Q Consensus 1346 ~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~--- 1418 (1513)
.......+|+|.|++|+||+++.+.+.....+ ....+..+|+.+++ -.+|||.-. +.|.
T Consensus 157 ~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-----------~~~~~v~v~c~~~~~~~~~~~lfg~~~---~~~~~~~ 222 (445)
T TIGR02915 157 KIAPSDITVLLLGESGTGKEVLARALHQLSDR-----------KDKRFVAINCAAIPENLLESELFGYEK---GAFTGAV 222 (445)
T ss_pred HHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc-----------CCCCeEEEECCCCChHHHHHHhcCCCC---CCcCCCc
Confidence 34456789999999999999988888654322 01346788888876 557788532 1222
Q ss_pred ---cCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEee
Q psy4730 1419 ---DGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 1484 (1513)
Q Consensus 1419 ---DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~ 1484 (1513)
.|.+.. ...-=+++| +.+++..-..|-.+|++...-.+... -..+.++|+|+-+
T Consensus 223 ~~~~g~~~~----------a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~~ 281 (445)
T TIGR02915 223 KQTLGKIEY----------AHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGR--EEIPVDVRIVCAT 281 (445)
T ss_pred cCCCCceeE----------CCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCC--ceeeeceEEEEec
Confidence 222211 112347778 67788888999999987654443332 2456788999976
No 495
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.98 E-value=0.15 Score=56.92 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=21.7
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|.|+||+||||||+.+.|+..+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3577999999999999999987765
No 496
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=90.98 E-value=0.13 Score=55.62 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.0
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...|+|+|++||||||+.+.|++.++
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34699999999999999999998764
No 497
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.96 E-value=0.14 Score=56.03 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..|+|+|||||||||+.+.|.+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999997654
No 498
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.91 E-value=0.25 Score=56.12 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=24.4
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
..-|.|.||+||||||+.+.|+..+...
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4578899999999999999999888753
No 499
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=90.91 E-value=0.13 Score=53.14 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.0
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-+.|+|++||||||++++|+....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 45789999999999999999976544
No 500
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.89 E-value=0.16 Score=56.07 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=22.3
Q ss_pred EEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
|-|.|||||||||+.+.|+..++.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 678999999999999999999985
Done!