Query psy4730
Match_columns 1513
No_of_seqs 333 out of 1790
Neff 7.7
Searched_HMMs 29240
Date Sat Aug 17 00:31:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 2E-209 7E-214 2178.1 85.5 999 90-1513 17-1063(3245)
2 4akg_A Glutathione S-transfera 100.0 6E-174 2E-178 1822.2 81.1 855 234-1513 215-1081(2695)
3 3vkg_A Dynein heavy chain, cyt 100.0 9.3E-53 3.2E-57 592.8 25.8 355 703-1164 1278-1653(3245)
4 4akg_A Glutathione S-transfera 100.0 6.2E-51 2.1E-55 574.9 32.3 290 703-1086 1241-1539(2695)
5 1r6b_X CLPA protein; AAA+, N-t 99.4 1.8E-11 6.2E-16 161.3 24.0 127 1353-1505 490-652 (758)
6 1qvr_A CLPB protein; coiled co 99.3 1.2E-10 4.1E-15 155.0 30.5 134 1352-1505 589-756 (854)
7 3pxi_A Negative regulator of g 99.3 1.3E-10 4.6E-15 152.8 29.1 124 1353-1505 523-661 (758)
8 2bjv_A PSP operon transcriptio 98.5 9.4E-07 3.2E-11 100.8 15.0 118 889-1035 104-238 (265)
9 4fcw_A Chaperone protein CLPB; 98.2 3.3E-06 1.1E-10 98.5 10.5 84 889-979 123-232 (311)
10 1ojl_A Transcriptional regulat 98.1 3E-05 1E-09 90.3 16.7 130 889-1047 100-245 (304)
11 1jbk_A CLPB protein; beta barr 98.1 5E-06 1.7E-10 88.8 7.7 69 890-972 120-194 (195)
12 3pxi_A Negative regulator of g 98.0 9.9E-06 3.4E-10 106.5 11.1 81 891-978 585-677 (758)
13 2r44_A Uncharacterized protein 98.0 5.8E-06 2E-10 97.5 7.6 80 891-977 115-199 (331)
14 1g8p_A Magnesium-chelatase 38 98.0 6.5E-06 2.2E-10 97.7 7.8 146 1350-1506 44-218 (350)
15 1xwi_A SKD1 protein; VPS4B, AA 98.0 3.2E-05 1.1E-09 90.8 13.5 46 932-978 148-194 (322)
16 3m6a_A ATP-dependent protease 97.9 7.5E-06 2.6E-10 103.0 6.7 85 891-978 181-268 (543)
17 1r6b_X CLPA protein; AAA+, N-t 97.9 1.6E-05 5.5E-10 104.6 9.6 80 892-978 564-668 (758)
18 3h4m_A Proteasome-activating n 97.9 1.4E-05 4.8E-10 91.9 7.9 45 933-978 156-203 (285)
19 3pxg_A Negative regulator of g 97.9 9.3E-06 3.2E-10 100.4 6.4 47 933-979 291-341 (468)
20 3syl_A Protein CBBX; photosynt 97.9 5.3E-05 1.8E-09 88.1 12.4 117 890-1034 135-259 (309)
21 4fcw_A Chaperone protein CLPB; 97.9 5.6E-05 1.9E-09 88.0 12.3 134 1352-1505 48-215 (311)
22 3f9v_A Minichromosome maintena 97.9 2.4E-05 8.1E-10 99.4 9.7 84 889-979 395-493 (595)
23 3pfi_A Holliday junction ATP-d 97.8 0.00013 4.3E-09 86.2 14.9 80 892-978 113-199 (338)
24 3eie_A Vacuolar protein sortin 97.8 0.00014 4.7E-09 85.4 14.4 45 933-978 154-199 (322)
25 2p65_A Hypothetical protein PF 97.8 1.5E-05 5.2E-10 84.8 5.3 61 890-964 120-187 (187)
26 4b4t_J 26S protease regulatory 97.8 4.1E-05 1.4E-09 91.2 9.3 46 932-978 286-334 (405)
27 2r44_A Uncharacterized protein 97.8 3.1E-05 1E-09 91.3 8.2 130 1348-1506 43-185 (331)
28 1ofh_A ATP-dependent HSL prote 97.8 5.2E-05 1.8E-09 88.1 9.9 65 908-974 145-213 (310)
29 4b4t_L 26S protease subunit RP 97.8 6E-05 2.1E-09 91.1 10.5 46 933-979 320-368 (437)
30 2chg_A Replication factor C sm 97.8 0.00015 5.2E-09 79.1 13.0 68 892-978 109-176 (226)
31 2zan_A Vacuolar protein sortin 97.8 8.1E-05 2.8E-09 91.4 11.8 46 932-978 270-316 (444)
32 4b4t_M 26S protease regulatory 97.7 3.5E-05 1.2E-09 93.2 7.4 46 933-979 320-368 (434)
33 1g8p_A Magnesium-chelatase 38 97.7 0.00013 4.5E-09 86.3 12.4 82 889-976 148-232 (350)
34 1l8q_A Chromosomal replication 97.7 4.8E-05 1.6E-09 89.4 8.4 43 935-978 134-181 (324)
35 4b4t_K 26S protease regulatory 97.7 5.2E-05 1.8E-09 91.5 8.6 46 933-979 311-360 (428)
36 1hqc_A RUVB; extended AAA-ATPa 97.7 0.00045 1.5E-08 80.8 16.5 79 892-977 97-182 (324)
37 3pfi_A Holliday junction ATP-d 97.7 9.6E-05 3.3E-09 87.2 10.8 120 1352-1506 56-184 (338)
38 4b4t_I 26S protease regulatory 97.7 6E-05 2E-09 90.0 8.5 47 932-979 320-369 (437)
39 3bos_A Putative DNA replicatio 97.7 7.4E-05 2.5E-09 83.1 8.9 42 936-977 141-188 (242)
40 3te6_A Regulatory protein SIR3 97.7 0.0003 1E-08 81.7 14.0 47 933-979 163-214 (318)
41 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.00032 1.1E-08 79.3 13.9 46 933-979 145-193 (262)
42 3nbx_X ATPase RAVA; AAA+ ATPas 97.6 6.4E-05 2.2E-09 92.9 8.6 142 1344-1505 34-181 (500)
43 3u61_B DNA polymerase accessor 97.6 0.00026 8.9E-09 83.0 13.5 46 932-978 135-180 (324)
44 3pvs_A Replication-associated 97.6 0.00014 4.8E-09 89.1 11.5 45 934-978 135-180 (447)
45 1hqc_A RUVB; extended AAA-ATPa 97.6 0.0002 6.7E-09 83.8 12.4 121 1351-1505 38-167 (324)
46 4b4t_H 26S protease regulatory 97.6 0.00015 5.2E-09 87.4 10.4 46 933-979 348-396 (467)
47 3cf0_A Transitional endoplasmi 97.6 0.00011 3.9E-09 85.2 8.8 46 932-978 153-201 (301)
48 2v1u_A Cell division control p 97.5 0.00034 1.2E-08 83.7 13.1 47 932-978 166-216 (387)
49 2qby_B CDC6 homolog 3, cell di 97.5 0.00015 5.2E-09 86.9 9.8 58 932-989 163-224 (384)
50 3t15_A Ribulose bisphosphate c 97.5 4E-05 1.4E-09 88.7 4.4 69 907-977 128-199 (293)
51 1sxj_A Activator 1 95 kDa subu 97.5 0.0004 1.4E-08 86.9 13.8 68 892-977 155-223 (516)
52 2chg_A Replication factor C sm 97.5 0.00027 9.4E-09 77.1 10.7 117 1353-1506 40-161 (226)
53 2bjv_A PSP operon transcriptio 97.5 0.00014 4.7E-09 82.8 8.2 137 1345-1504 23-175 (265)
54 3d8b_A Fidgetin-like protein 1 97.5 0.00055 1.9E-08 81.4 13.3 46 932-978 220-266 (357)
55 3nbx_X ATPase RAVA; AAA+ ATPas 97.5 0.00021 7.2E-09 88.3 9.7 77 890-974 114-194 (500)
56 3uk6_A RUVB-like 2; hexameric 97.4 0.00075 2.6E-08 80.5 13.9 80 889-978 193-274 (368)
57 3syl_A Protein CBBX; photosynt 97.4 0.00012 4E-09 85.2 6.6 120 1352-1506 68-204 (309)
58 3m6a_A ATP-dependent protease 97.4 0.00037 1.3E-08 87.6 11.6 137 1351-1506 108-253 (543)
59 1qvr_A CLPB protein; coiled co 97.4 0.00017 5.7E-09 96.0 8.7 83 889-978 664-772 (854)
60 3vfd_A Spastin; ATPase, microt 97.4 0.0003 1E-08 84.7 10.0 46 932-978 251-297 (389)
61 2qp9_X Vacuolar protein sortin 97.4 0.00014 4.6E-09 86.7 6.2 46 932-978 186-232 (355)
62 1fnn_A CDC6P, cell division co 97.4 0.0012 4.1E-08 79.0 14.6 76 889-978 129-208 (389)
63 1njg_A DNA polymerase III subu 97.4 0.00046 1.6E-08 76.2 10.0 135 1352-1505 46-184 (250)
64 2r62_A Cell division protease 97.3 0.00038 1.3E-08 79.2 9.1 44 933-977 151-197 (268)
65 1njg_A DNA polymerase III subu 97.3 0.002 6.9E-08 71.0 14.9 45 933-978 156-200 (250)
66 1ofh_A ATP-dependent HSL prote 97.3 0.00029 9.8E-09 81.7 8.2 133 1350-1506 49-202 (310)
67 3t15_A Ribulose bisphosphate c 97.3 0.00031 1.1E-08 81.2 8.1 130 1351-1503 36-183 (293)
68 1iqp_A RFCS; clamp loader, ext 97.3 0.00054 1.8E-08 80.0 10.0 44 933-977 140-183 (327)
69 1sxj_B Activator 1 37 kDa subu 97.3 0.00075 2.6E-08 78.6 10.9 45 933-978 137-181 (323)
70 1ojl_A Transcriptional regulat 97.3 0.00059 2E-08 79.3 9.9 135 1347-1504 21-171 (304)
71 3u61_B DNA polymerase accessor 97.3 0.00061 2.1E-08 79.8 10.0 114 1351-1507 48-166 (324)
72 2z4s_A Chromosomal replication 97.2 0.0003 1E-08 86.2 7.4 42 936-977 231-277 (440)
73 3cf2_A TER ATPase, transitiona 97.2 0.00029 9.9E-09 91.3 7.0 46 933-979 340-388 (806)
74 2chq_A Replication factor C sm 97.2 0.00071 2.4E-08 78.6 9.8 117 1353-1506 40-161 (319)
75 3f9v_A Minichromosome maintena 97.2 0.00016 5.5E-09 91.7 4.3 126 1353-1503 329-473 (595)
76 1a5t_A Delta prime, HOLB; zinc 97.2 0.0015 5.2E-08 76.8 12.2 132 1350-1506 23-167 (334)
77 1lv7_A FTSH; alpha/beta domain 97.2 0.00078 2.7E-08 76.1 9.3 46 932-978 149-197 (257)
78 1iqp_A RFCS; clamp loader, ext 97.2 0.00087 3E-08 78.2 10.1 116 1353-1505 48-168 (327)
79 3hws_A ATP-dependent CLP prote 97.2 0.00039 1.3E-08 82.9 7.1 28 947-974 239-267 (363)
80 3uk6_A RUVB-like 2; hexameric 97.2 0.0011 3.6E-08 79.1 10.8 64 1437-1506 190-259 (368)
81 1sxj_D Activator 1 41 kDa subu 97.1 0.0014 4.7E-08 77.5 11.5 44 933-977 163-206 (353)
82 3pxg_A Negative regulator of g 97.1 0.0018 6.3E-08 79.8 12.6 123 1349-1507 199-326 (468)
83 3hu3_A Transitional endoplasmi 97.1 0.0013 4.3E-08 81.4 10.9 46 932-978 339-387 (489)
84 3h4m_A Proteasome-activating n 97.1 0.00032 1.1E-08 80.5 5.3 123 1349-1505 49-187 (285)
85 1sxj_B Activator 1 37 kDa subu 97.1 0.0011 3.7E-08 77.3 9.8 116 1354-1506 45-166 (323)
86 1sxj_D Activator 1 41 kDa subu 97.1 0.0014 4.8E-08 77.4 10.8 122 1352-1506 59-192 (353)
87 3pvs_A Replication-associated 97.1 0.00099 3.4E-08 81.5 9.5 111 1352-1506 51-165 (447)
88 3n70_A Transport activator; si 97.0 0.00096 3.3E-08 68.4 7.7 38 716-753 11-48 (145)
89 1um8_A ATP-dependent CLP prote 97.0 0.00049 1.7E-08 82.5 6.1 94 1351-1466 72-182 (376)
90 1jr3_A DNA polymerase III subu 97.0 0.0018 6.1E-08 77.1 11.0 138 1350-1506 37-178 (373)
91 2dhr_A FTSH; AAA+ protein, hex 97.0 0.016 5.4E-07 71.5 19.5 44 933-977 169-215 (499)
92 2chq_A Replication factor C sm 97.0 0.00092 3.2E-08 77.7 8.1 44 933-977 132-175 (319)
93 1jbk_A CLPB protein; beta barr 97.0 0.00044 1.5E-08 73.4 4.9 129 1351-1507 43-186 (195)
94 2p65_A Hypothetical protein PF 96.9 0.00047 1.6E-08 73.0 4.5 128 1351-1506 43-186 (187)
95 2qby_A CDC6 homolog 1, cell di 96.9 0.0022 7.4E-08 76.5 10.5 48 933-980 163-214 (386)
96 3hws_A ATP-dependent CLP prote 96.9 0.00029 9.8E-09 84.1 2.4 96 1350-1467 50-162 (363)
97 3k1j_A LON protease, ATP-depen 96.9 0.0007 2.4E-08 86.4 6.2 146 1344-1499 53-276 (604)
98 3b9p_A CG5977-PA, isoform A; A 96.9 0.0019 6.5E-08 74.5 9.3 45 933-978 159-204 (297)
99 2qby_B CDC6 homolog 3, cell di 96.9 0.0012 4.2E-08 78.9 7.9 131 1351-1505 45-196 (384)
100 2ce7_A Cell division protein F 96.8 0.0014 4.9E-08 80.3 8.2 45 932-977 153-200 (476)
101 1um8_A ATP-dependent CLP prote 96.8 0.0017 5.8E-08 77.7 8.5 29 946-974 255-284 (376)
102 1sxj_C Activator 1 40 kDa subu 96.8 0.0049 1.7E-07 72.6 11.8 44 933-977 140-183 (340)
103 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0013 4.4E-08 74.3 6.3 123 1350-1506 38-177 (262)
104 1d2n_A N-ethylmaleimide-sensit 96.7 0.0031 1.1E-07 71.8 9.3 27 727-753 62-88 (272)
105 3co5_A Putative two-component 96.7 0.0013 4.6E-08 67.2 5.6 36 717-752 15-50 (143)
106 3b9p_A CG5977-PA, isoform A; A 96.7 0.0029 1E-07 72.9 8.7 122 1351-1506 54-189 (297)
107 1sxj_E Activator 1 40 kDa subu 96.6 0.0023 7.9E-08 75.7 7.8 58 1436-1506 134-193 (354)
108 1sxj_C Activator 1 40 kDa subu 96.6 0.0044 1.5E-07 73.0 10.1 113 1354-1505 49-168 (340)
109 1jr3_A DNA polymerase III subu 96.6 0.0092 3.2E-07 70.9 13.0 45 933-978 149-193 (373)
110 2zan_A Vacuolar protein sortin 96.6 0.0039 1.3E-07 76.4 9.7 124 1351-1507 167-302 (444)
111 3vfd_A Spastin; ATPase, microt 96.6 0.0009 3.1E-08 80.6 4.0 127 1351-1506 148-282 (389)
112 2c9o_A RUVB-like 1; hexameric 96.6 0.0033 1.1E-07 77.4 9.0 70 1125-1215 298-376 (456)
113 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.0035 1.2E-07 73.4 8.5 124 1351-1507 45-180 (322)
114 3d8b_A Fidgetin-like protein 1 96.5 0.0021 7.1E-08 76.4 6.4 124 1350-1506 116-251 (357)
115 3n70_A Transport activator; si 96.5 0.0028 9.5E-08 64.9 6.4 97 1343-1485 16-114 (145)
116 2qp9_X Vacuolar protein sortin 96.5 0.0017 5.9E-08 77.1 5.4 120 1351-1507 84-218 (355)
117 1in4_A RUVB, holliday junction 96.5 0.0053 1.8E-07 72.2 9.5 46 931-977 148-194 (334)
118 2v1u_A Cell division control p 96.5 0.0033 1.1E-07 75.0 7.7 141 1350-1505 43-200 (387)
119 1d2n_A N-ethylmaleimide-sensit 96.5 0.0036 1.2E-07 71.2 7.5 86 1350-1460 63-160 (272)
120 3cf0_A Transitional endoplasmi 96.4 0.0073 2.5E-07 69.9 9.9 119 1350-1506 48-186 (301)
121 1ypw_A Transitional endoplasmi 96.4 0.0016 5.3E-08 85.7 4.5 45 932-977 615-662 (806)
122 1ny5_A Transcriptional regulat 96.4 0.053 1.8E-06 65.0 17.4 117 889-1035 235-368 (387)
123 3eie_A Vacuolar protein sortin 96.3 0.0024 8.3E-08 74.7 5.3 119 1351-1506 51-184 (322)
124 1ixz_A ATP-dependent metallopr 96.3 0.012 4E-07 66.2 10.7 44 933-977 154-200 (254)
125 1ypw_A Transitional endoplasmi 96.3 0.016 5.6E-07 76.0 13.0 46 932-978 339-387 (806)
126 1fnn_A CDC6P, cell division co 96.3 0.017 5.9E-07 68.8 12.2 132 1353-1505 46-192 (389)
127 1a5t_A Delta prime, HOLB; zinc 96.2 0.032 1.1E-06 65.4 14.2 43 933-976 138-180 (334)
128 3jvv_A Twitching mobility prot 96.2 0.01 3.5E-07 70.1 9.9 94 1352-1457 124-217 (356)
129 3cf2_A TER ATPase, transitiona 96.2 0.00076 2.6E-08 87.4 -0.5 45 933-978 616-663 (806)
130 2r62_A Cell division protease 96.1 0.007 2.4E-07 68.5 7.4 26 1351-1376 44-69 (268)
131 2gno_A DNA polymerase III, gam 96.0 0.012 4.1E-07 68.1 9.0 119 1351-1506 18-139 (305)
132 3bos_A Putative DNA replicatio 96.0 0.011 3.7E-07 65.3 8.2 28 1350-1377 51-78 (242)
133 3dzd_A Transcriptional regulat 96.0 0.033 1.1E-06 66.3 12.6 136 1344-1503 145-296 (368)
134 1iy2_A ATP-dependent metallopr 95.9 0.018 6.1E-07 65.7 9.6 44 933-977 178-224 (278)
135 3co5_A Putative two-component 95.9 0.0043 1.5E-07 63.3 4.0 90 1347-1485 23-114 (143)
136 1sxj_A Activator 1 95 kDa subu 95.9 0.029 9.9E-07 70.0 12.1 123 1351-1506 77-209 (516)
137 2c95_A Adenylate kinase 1; tra 95.8 0.0052 1.8E-07 65.8 4.4 29 1348-1376 6-34 (196)
138 3hu3_A Transitional endoplasmi 95.8 0.0053 1.8E-07 75.8 4.8 119 1350-1505 237-371 (489)
139 1in4_A RUVB, holliday junction 95.8 0.027 9.4E-07 66.1 10.7 121 1352-1506 52-180 (334)
140 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0054 1.8E-07 69.4 4.3 26 1352-1377 5-30 (260)
141 3ec2_A DNA replication protein 95.7 0.0054 1.8E-07 65.0 3.6 26 1351-1376 38-63 (180)
142 2x8a_A Nuclear valosin-contain 95.6 0.015 5.2E-07 66.2 7.2 44 933-977 146-192 (274)
143 2ce7_A Cell division protein F 95.5 0.017 6E-07 70.7 7.8 123 1351-1507 49-187 (476)
144 2plr_A DTMP kinase, probable t 95.5 0.013 4.3E-07 63.6 5.9 26 1352-1377 5-30 (213)
145 2gno_A DNA polymerase III, gam 95.5 0.053 1.8E-06 62.7 11.4 41 933-976 112-152 (305)
146 1l8q_A Chromosomal replication 95.5 0.0057 1.9E-07 71.5 3.2 27 1351-1377 37-63 (324)
147 3dzd_A Transcriptional regulat 95.5 0.22 7.4E-06 59.2 16.9 81 890-978 227-318 (368)
148 1w5s_A Origin recognition comp 95.4 0.053 1.8E-06 65.2 11.7 46 933-978 179-230 (412)
149 3umf_A Adenylate kinase; rossm 95.3 0.0067 2.3E-07 66.5 3.0 25 1352-1376 30-54 (217)
150 1ny5_A Transcriptional regulat 95.3 0.027 9.2E-07 67.6 8.4 116 1347-1485 156-280 (387)
151 1sxj_E Activator 1 40 kDa subu 95.3 0.083 2.8E-06 62.2 12.5 45 933-978 164-208 (354)
152 4b4t_K 26S protease regulatory 95.3 0.011 3.7E-07 71.4 4.7 33 1344-1376 197-231 (428)
153 2xb4_A Adenylate kinase; ATP-b 95.2 0.011 3.7E-07 65.2 4.3 24 1353-1376 2-25 (223)
154 4b4t_M 26S protease regulatory 95.2 0.012 4.1E-07 71.1 4.9 26 1351-1376 215-240 (434)
155 4b4t_L 26S protease subunit RP 95.2 0.011 3.8E-07 71.4 4.7 34 1343-1376 205-240 (437)
156 2eyu_A Twitching motility prot 95.1 0.029 9.8E-07 63.4 7.3 28 1350-1377 24-51 (261)
157 4b4t_J 26S protease regulatory 95.1 0.012 4.2E-07 70.0 4.4 130 1343-1507 172-320 (405)
158 3te6_A Regulatory protein SIR3 95.1 0.05 1.7E-06 63.1 9.4 55 1344-1402 36-92 (318)
159 1lv7_A FTSH; alpha/beta domain 95.0 0.027 9.3E-07 63.3 6.8 27 1350-1376 44-70 (257)
160 3ec2_A DNA replication protein 94.9 0.01 3.6E-07 62.8 2.9 27 727-753 36-62 (180)
161 4b4t_H 26S protease regulatory 94.9 0.025 8.6E-07 68.3 6.3 34 1343-1376 233-268 (467)
162 4eaq_A DTMP kinase, thymidylat 94.8 0.029 9.9E-07 62.1 6.3 27 1351-1377 26-52 (229)
163 3f8t_A Predicted ATPase involv 94.8 0.098 3.4E-06 63.1 11.2 134 1122-1266 300-464 (506)
164 2qby_A CDC6 homolog 1, cell di 94.8 0.043 1.5E-06 65.1 8.2 27 1351-1377 45-71 (386)
165 4b4t_I 26S protease regulatory 94.8 0.019 6.6E-07 68.6 4.9 128 1344-1506 207-353 (437)
166 1u0j_A DNA replication protein 94.6 0.24 8.1E-06 55.7 12.9 67 907-973 163-248 (267)
167 2dhr_A FTSH; AAA+ protein, hex 94.4 0.12 4E-06 63.8 10.9 25 1351-1375 64-88 (499)
168 3k1j_A LON protease, ATP-depen 94.4 0.046 1.6E-06 69.6 7.6 36 720-755 51-86 (604)
169 3lv8_A DTMP kinase, thymidylat 94.4 0.051 1.8E-06 60.3 7.0 26 1352-1377 28-53 (236)
170 2ewv_A Twitching motility prot 94.4 0.06 2.1E-06 64.1 8.1 28 1350-1377 135-162 (372)
171 1u0j_A DNA replication protein 94.4 0.046 1.6E-06 61.4 6.6 51 1321-1375 74-128 (267)
172 2z4s_A Chromosomal replication 94.4 0.012 4.1E-07 71.9 2.0 27 1351-1377 130-156 (440)
173 3f8t_A Predicted ATPase involv 94.4 0.0098 3.4E-07 71.6 1.1 70 889-967 304-385 (506)
174 1kag_A SKI, shikimate kinase I 94.2 0.017 6E-07 60.4 2.4 25 1352-1376 5-29 (173)
175 1ex7_A Guanylate kinase; subst 94.2 0.02 6.8E-07 61.2 2.8 24 1352-1375 2-25 (186)
176 3kb2_A SPBC2 prophage-derived 94.1 0.019 6.5E-07 59.9 2.7 24 1353-1376 3-26 (173)
177 1lvg_A Guanylate kinase, GMP k 94.1 0.022 7.4E-07 61.5 3.1 26 1351-1376 4-29 (198)
178 1kgd_A CASK, peripheral plasma 94.1 0.022 7.7E-07 60.3 3.0 25 1351-1375 5-29 (180)
179 1tue_A Replication protein E1; 94.1 0.042 1.4E-06 59.2 5.1 26 1351-1376 58-83 (212)
180 2x8a_A Nuclear valosin-contain 93.9 0.018 6E-07 65.7 2.0 28 1349-1376 42-69 (274)
181 2ze6_A Isopentenyl transferase 93.9 0.042 1.4E-06 61.7 5.1 24 1353-1376 3-26 (253)
182 1ixz_A ATP-dependent metallopr 93.9 0.045 1.5E-06 61.3 5.3 26 1350-1375 48-73 (254)
183 3ld9_A DTMP kinase, thymidylat 93.8 0.072 2.4E-06 58.5 6.6 25 1353-1377 23-47 (223)
184 2w58_A DNAI, primosome compone 93.7 0.069 2.3E-06 57.4 6.2 25 1352-1376 55-79 (202)
185 1tue_A Replication protein E1; 93.7 0.081 2.8E-06 56.9 6.5 55 909-963 122-179 (212)
186 1qhx_A CPT, protein (chloramph 93.7 0.022 7.4E-07 60.0 2.1 25 1352-1376 4-28 (178)
187 3trf_A Shikimate kinase, SK; a 93.7 0.028 9.7E-07 59.5 3.0 26 1351-1376 5-30 (185)
188 1ye8_A Protein THEP1, hypothet 93.7 0.03 1E-06 59.4 3.1 24 1353-1376 2-25 (178)
189 1kht_A Adenylate kinase; phosp 93.7 0.031 1E-06 59.4 3.2 25 1352-1376 4-28 (192)
190 3vaa_A Shikimate kinase, SK; s 93.7 0.03 1E-06 60.3 3.2 26 1351-1376 25-50 (199)
191 4tmk_A Protein (thymidylate ki 93.6 0.079 2.7E-06 57.8 6.4 97 1352-1457 4-126 (213)
192 3uie_A Adenylyl-sulfate kinase 93.5 0.035 1.2E-06 59.9 3.3 26 1351-1376 25-50 (200)
193 1nks_A Adenylate kinase; therm 93.4 0.035 1.2E-06 59.0 3.2 25 1353-1377 3-27 (194)
194 1iy2_A ATP-dependent metallopr 93.3 0.063 2.2E-06 61.1 5.4 26 1350-1375 72-97 (278)
195 1s96_A Guanylate kinase, GMP k 93.3 0.036 1.2E-06 60.9 3.0 37 1340-1376 5-41 (219)
196 3t61_A Gluconokinase; PSI-biol 93.3 0.035 1.2E-06 59.8 2.9 24 1353-1376 20-43 (202)
197 2rhm_A Putative kinase; P-loop 93.3 0.036 1.2E-06 59.0 2.9 25 1352-1376 6-30 (193)
198 3c8u_A Fructokinase; YP_612366 93.2 0.043 1.5E-06 59.6 3.4 26 1351-1376 22-47 (208)
199 1via_A Shikimate kinase; struc 93.2 0.038 1.3E-06 58.1 2.9 24 1353-1376 6-29 (175)
200 3a00_A Guanylate kinase, GMP k 93.2 0.036 1.2E-06 59.0 2.8 25 1352-1376 2-26 (186)
201 3cm0_A Adenylate kinase; ATP-b 93.2 0.038 1.3E-06 58.5 2.9 25 1352-1376 5-29 (186)
202 1zp6_A Hypothetical protein AT 93.2 0.03 1E-06 59.6 2.2 24 1351-1374 9-32 (191)
203 3tr0_A Guanylate kinase, GMP k 93.1 0.036 1.2E-06 59.7 2.7 25 1351-1375 7-31 (205)
204 2kjq_A DNAA-related protein; s 93.0 0.094 3.2E-06 53.8 5.6 26 728-753 35-60 (149)
205 4eun_A Thermoresistant glucoki 93.0 0.042 1.4E-06 59.2 3.1 26 1351-1376 29-54 (200)
206 1ly1_A Polynucleotide kinase; 93.0 0.041 1.4E-06 57.8 2.8 22 1352-1373 3-24 (181)
207 1knq_A Gluconate kinase; ALFA/ 92.9 0.043 1.5E-06 57.5 2.9 25 1352-1376 9-33 (175)
208 1cke_A CK, MSSA, protein (cyti 92.9 0.042 1.4E-06 60.3 2.9 25 1352-1376 6-30 (227)
209 2kjq_A DNAA-related protein; s 92.9 0.054 1.8E-06 55.6 3.5 27 1350-1376 35-61 (149)
210 3iij_A Coilin-interacting nucl 92.9 0.042 1.4E-06 58.0 2.7 25 1352-1376 12-36 (180)
211 3lw7_A Adenylate kinase relate 92.9 0.036 1.2E-06 57.6 2.2 23 1352-1375 2-24 (179)
212 2w58_A DNAI, primosome compone 92.9 0.061 2.1E-06 57.8 4.1 26 730-755 55-80 (202)
213 3tau_A Guanylate kinase, GMP k 92.9 0.042 1.4E-06 59.7 2.7 26 1351-1376 8-33 (208)
214 1e6c_A Shikimate kinase; phosp 92.8 0.047 1.6E-06 57.0 2.9 25 1352-1376 3-27 (173)
215 3hjn_A DTMP kinase, thymidylat 92.8 0.18 6.3E-06 54.2 7.6 24 1354-1377 3-26 (197)
216 2bbw_A Adenylate kinase 4, AK4 92.7 0.044 1.5E-06 61.2 2.7 26 1352-1377 28-53 (246)
217 2qor_A Guanylate kinase; phosp 92.7 0.04 1.4E-06 59.6 2.3 27 1350-1376 11-37 (204)
218 2c9o_A RUVB-like 1; hexameric 92.7 0.092 3.1E-06 64.4 5.8 25 1352-1376 64-88 (456)
219 3ney_A 55 kDa erythrocyte memb 92.7 0.051 1.7E-06 58.5 3.0 26 1351-1376 19-44 (197)
220 3fb4_A Adenylate kinase; psych 92.6 0.048 1.6E-06 59.4 2.7 23 1354-1376 3-25 (216)
221 2iyv_A Shikimate kinase, SK; t 92.6 0.052 1.8E-06 57.4 2.9 24 1353-1376 4-27 (184)
222 2jaq_A Deoxyguanosine kinase; 92.5 0.049 1.7E-06 58.4 2.7 24 1353-1376 2-25 (205)
223 3sr0_A Adenylate kinase; phosp 92.5 0.05 1.7E-06 59.1 2.7 24 1353-1376 2-25 (206)
224 2j41_A Guanylate kinase; GMP, 92.5 0.05 1.7E-06 58.6 2.7 25 1351-1375 6-30 (207)
225 2bdt_A BH3686; alpha-beta prot 92.5 0.051 1.7E-06 57.8 2.8 21 1353-1373 4-24 (189)
226 1tev_A UMP-CMP kinase; ploop, 92.5 0.051 1.7E-06 57.8 2.7 25 1352-1376 4-28 (196)
227 1znw_A Guanylate kinase, GMP k 92.4 0.056 1.9E-06 58.6 3.0 29 1348-1376 17-45 (207)
228 3asz_A Uridine kinase; cytidin 92.4 0.056 1.9E-06 58.6 3.1 24 1353-1376 8-31 (211)
229 1zak_A Adenylate kinase; ATP:A 92.4 0.051 1.7E-06 59.6 2.7 25 1352-1376 6-30 (222)
230 1z6g_A Guanylate kinase; struc 92.4 0.053 1.8E-06 59.4 2.8 27 1349-1375 21-47 (218)
231 2cdn_A Adenylate kinase; phosp 92.4 0.057 1.9E-06 58.1 2.9 24 1353-1376 22-45 (201)
232 2pt7_A CAG-ALFA; ATPase, prote 92.3 0.068 2.3E-06 62.5 3.7 29 1347-1375 167-195 (330)
233 1zuh_A Shikimate kinase; alpha 92.3 0.06 2E-06 56.1 2.9 25 1352-1376 8-32 (168)
234 2bwj_A Adenylate kinase 5; pho 92.3 0.072 2.5E-06 56.9 3.6 27 1350-1376 11-37 (199)
235 2pt5_A Shikimate kinase, SK; a 92.2 0.061 2.1E-06 55.9 2.9 24 1353-1376 2-25 (168)
236 3sop_A Neuronal-specific septi 92.2 0.059 2E-06 61.2 3.0 24 1353-1376 4-27 (270)
237 1qf9_A UMP/CMP kinase, protein 92.2 0.057 1.9E-06 57.3 2.7 25 1352-1376 7-31 (194)
238 3e1s_A Exodeoxyribonuclease V, 92.1 0.24 8.2E-06 62.3 8.6 92 1350-1465 203-310 (574)
239 2vli_A Antibiotic resistance p 92.1 0.049 1.7E-06 57.4 2.0 25 1352-1376 6-30 (183)
240 2wwf_A Thymidilate kinase, put 92.1 0.069 2.3E-06 57.8 3.2 26 1352-1377 11-36 (212)
241 1aky_A Adenylate kinase; ATP:A 92.0 0.061 2.1E-06 58.8 2.7 25 1352-1376 5-29 (220)
242 3a8t_A Adenylate isopentenyltr 92.0 0.055 1.9E-06 62.9 2.4 25 1352-1376 41-65 (339)
243 3dl0_A Adenylate kinase; phosp 92.0 0.053 1.8E-06 59.1 2.1 23 1354-1376 3-25 (216)
244 1g41_A Heat shock protein HSLU 91.9 0.066 2.3E-06 64.8 3.0 26 1351-1376 50-75 (444)
245 2orw_A Thymidine kinase; TMTK, 91.9 0.098 3.4E-06 55.7 4.1 31 1436-1466 76-108 (184)
246 1nn5_A Similar to deoxythymidy 91.8 0.076 2.6E-06 57.5 3.2 26 1352-1377 10-35 (215)
247 1zd8_A GTP:AMP phosphotransfer 91.8 0.055 1.9E-06 59.5 2.0 25 1352-1376 8-32 (227)
248 1y63_A LMAJ004144AAA protein; 91.7 0.076 2.6E-06 56.4 2.9 23 1352-1374 11-33 (184)
249 2yvu_A Probable adenylyl-sulfa 91.7 0.083 2.8E-06 56.0 3.3 26 1352-1377 14-39 (186)
250 4e22_A Cytidylate kinase; P-lo 91.7 0.063 2.2E-06 60.2 2.4 26 1351-1376 27-52 (252)
251 1ex7_A Guanylate kinase; subst 91.6 0.071 2.4E-06 56.9 2.5 25 729-753 1-25 (186)
252 3b9q_A Chloroplast SRP recepto 91.6 0.28 9.6E-06 56.5 7.8 26 1352-1377 101-126 (302)
253 1e4v_A Adenylate kinase; trans 91.5 0.074 2.5E-06 57.9 2.7 23 1354-1376 3-25 (214)
254 3gmt_A Adenylate kinase; ssgci 91.5 0.11 3.9E-06 57.1 4.1 25 1352-1376 9-33 (230)
255 2z0h_A DTMP kinase, thymidylat 91.5 0.086 2.9E-06 56.2 3.1 24 1354-1377 3-26 (197)
256 1htw_A HI0065; nucleotide-bind 91.5 0.077 2.6E-06 55.0 2.6 24 1352-1375 34-57 (158)
257 4gp7_A Metallophosphoesterase; 91.4 0.073 2.5E-06 55.9 2.4 20 1352-1371 10-29 (171)
258 3be4_A Adenylate kinase; malar 91.3 0.081 2.8E-06 57.8 2.7 24 1353-1376 7-30 (217)
259 1gvn_B Zeta; postsegregational 91.3 0.081 2.8E-06 60.6 2.8 24 1352-1375 34-57 (287)
260 1ukz_A Uridylate kinase; trans 91.3 0.07 2.4E-06 57.4 2.1 24 1353-1376 17-40 (203)
261 2yhs_A FTSY, cell division pro 91.2 0.31 1E-05 59.5 7.9 26 1352-1377 294-319 (503)
262 2i3b_A HCR-ntpase, human cance 91.2 0.1 3.4E-06 55.9 3.2 24 1353-1376 3-26 (189)
263 3lnc_A Guanylate kinase, GMP k 91.2 0.071 2.4E-06 58.8 2.1 24 1352-1375 28-52 (231)
264 3nwj_A ATSK2; P loop, shikimat 91.1 0.091 3.1E-06 58.9 2.9 26 1351-1376 48-73 (250)
265 2pbr_A DTMP kinase, thymidylat 91.1 0.098 3.4E-06 55.5 3.1 25 1353-1377 2-26 (195)
266 1rz3_A Hypothetical protein rb 91.1 0.14 4.7E-06 55.2 4.3 26 1352-1377 23-48 (201)
267 3b85_A Phosphate starvation-in 91.1 0.15 5.3E-06 55.3 4.6 26 1349-1374 20-45 (208)
268 2og2_A Putative signal recogni 91.1 0.33 1.1E-05 57.1 7.8 26 1352-1377 158-183 (359)
269 1gtv_A TMK, thymidylate kinase 91.0 0.058 2E-06 58.5 1.1 25 1353-1377 2-26 (214)
270 2f1r_A Molybdopterin-guanine d 91.0 0.062 2.1E-06 56.6 1.2 26 1352-1377 3-28 (171)
271 3tlx_A Adenylate kinase 2; str 90.9 0.091 3.1E-06 58.6 2.7 24 1353-1376 31-54 (243)
272 2pez_A Bifunctional 3'-phospho 90.9 0.11 3.7E-06 54.8 3.1 25 1352-1376 6-30 (179)
273 1ak2_A Adenylate kinase isoenz 90.9 0.1 3.4E-06 57.7 2.9 25 1352-1376 17-41 (233)
274 1rj9_A FTSY, signal recognitio 90.8 0.11 3.7E-06 60.0 3.3 26 1352-1377 103-128 (304)
275 2oap_1 GSPE-2, type II secreti 90.7 0.12 4.1E-06 64.0 3.7 31 1345-1375 254-284 (511)
276 4hlc_A DTMP kinase, thymidylat 90.7 0.21 7.4E-06 54.0 5.3 24 1353-1376 4-27 (205)
277 3r20_A Cytidylate kinase; stru 90.7 0.12 4E-06 57.2 3.2 26 1351-1376 9-34 (233)
278 1m7g_A Adenylylsulfate kinase; 90.6 0.12 4.1E-06 56.1 3.3 26 1351-1376 25-50 (211)
279 1np6_A Molybdopterin-guanine d 90.6 0.19 6.5E-06 53.0 4.6 27 1351-1377 6-32 (174)
280 1jjv_A Dephospho-COA kinase; P 90.6 0.091 3.1E-06 56.7 2.2 21 1353-1373 4-24 (206)
281 2if2_A Dephospho-COA kinase; a 90.6 0.1 3.6E-06 56.1 2.7 22 1353-1375 3-24 (204)
282 2v9p_A Replication protein E1; 90.5 0.11 3.8E-06 59.8 2.9 28 1348-1375 123-150 (305)
283 3tif_A Uncharacterized ABC tra 90.5 0.089 3.1E-06 58.4 2.1 25 1351-1375 31-55 (235)
284 2v54_A DTMP kinase, thymidylat 90.4 0.11 3.8E-06 55.7 2.8 24 1352-1375 5-28 (204)
285 3foz_A TRNA delta(2)-isopenten 90.4 0.13 4.6E-06 58.8 3.5 40 954-993 196-235 (316)
286 2p5t_B PEZT; postsegregational 90.4 0.082 2.8E-06 59.3 1.7 25 1352-1376 33-57 (253)
287 1w36_D RECD, exodeoxyribonucle 90.3 0.58 2E-05 59.3 9.7 29 1350-1378 163-191 (608)
288 2qgz_A Helicase loader, putati 90.1 0.2 7E-06 57.8 4.7 26 1351-1376 152-177 (308)
289 3aez_A Pantothenate kinase; tr 90.0 0.14 4.7E-06 59.4 3.2 26 1352-1377 91-116 (312)
290 2gza_A Type IV secretion syste 89.9 0.15 5.2E-06 60.3 3.6 30 1347-1376 171-200 (361)
291 3e70_C DPA, signal recognition 89.9 0.14 4.9E-06 59.6 3.3 27 1351-1377 129-155 (328)
292 1svm_A Large T antigen; AAA+ f 89.9 0.2 6.8E-06 59.5 4.5 28 1348-1375 166-193 (377)
293 1xjc_A MOBB protein homolog; s 89.8 0.18 6.2E-06 52.7 3.6 26 1352-1377 5-30 (169)
294 2ga8_A Hypothetical 39.9 kDa p 89.7 0.24 8E-06 58.0 4.8 26 1352-1377 25-50 (359)
295 1p9r_A General secretion pathw 89.7 0.23 7.9E-06 59.8 5.0 24 1353-1376 169-192 (418)
296 3kta_A Chromosome segregation 89.7 0.13 4.3E-06 54.3 2.4 24 1353-1376 28-51 (182)
297 3exa_A TRNA delta(2)-isopenten 89.7 0.17 5.8E-06 58.1 3.5 73 665-739 8-102 (322)
298 2pcj_A ABC transporter, lipopr 89.7 0.11 3.8E-06 57.1 2.0 24 1352-1375 31-54 (224)
299 2onk_A Molybdate/tungstate ABC 89.7 0.13 4.5E-06 57.2 2.6 24 1352-1375 25-48 (240)
300 2cbz_A Multidrug resistance-as 89.5 0.12 4.1E-06 57.4 2.1 25 1351-1375 31-55 (237)
301 2qt1_A Nicotinamide riboside k 89.4 0.13 4.3E-06 55.6 2.2 24 1352-1375 22-45 (207)
302 2jeo_A Uridine-cytidine kinase 89.4 0.16 5.5E-06 56.5 3.1 26 1352-1377 26-51 (245)
303 4a74_A DNA repair and recombin 89.4 0.15 5E-06 55.8 2.7 26 1350-1375 24-49 (231)
304 2grj_A Dephospho-COA kinase; T 89.4 0.16 5.5E-06 54.4 2.9 25 1352-1376 13-37 (192)
305 3ake_A Cytidylate kinase; CMP 89.2 0.17 5.8E-06 54.4 2.9 24 1353-1376 4-27 (208)
306 2ehv_A Hypothetical protein PH 89.1 0.15 5.2E-06 56.5 2.6 24 1350-1373 29-52 (251)
307 1uf9_A TT1252 protein; P-loop, 89.1 0.16 5.5E-06 54.3 2.7 24 1351-1374 8-31 (203)
308 1sgw_A Putative ABC transporte 89.1 0.13 4.6E-06 56.0 2.1 25 1351-1375 35-59 (214)
309 3crm_A TRNA delta(2)-isopenten 89.1 0.13 4.5E-06 59.5 2.0 25 1352-1376 6-30 (323)
310 2p67_A LAO/AO transport system 89.0 0.73 2.5E-05 54.0 8.5 26 1352-1377 57-82 (341)
311 1odf_A YGR205W, hypothetical 3 89.0 0.19 6.4E-06 57.6 3.3 26 1352-1377 32-57 (290)
312 3gfo_A Cobalt import ATP-bindi 88.9 0.14 4.7E-06 58.2 2.1 24 1352-1375 35-58 (275)
313 3fvq_A Fe(3+) IONS import ATP- 88.9 0.16 5.3E-06 59.9 2.5 24 1352-1375 31-54 (359)
314 2qgz_A Helicase loader, putati 88.9 0.2 7E-06 57.8 3.5 26 729-754 152-177 (308)
315 3llm_A ATP-dependent RNA helic 88.8 0.25 8.5E-06 54.6 4.1 26 1347-1372 72-97 (235)
316 1b0u_A Histidine permease; ABC 88.8 0.14 4.9E-06 57.7 2.1 24 1352-1375 33-56 (262)
317 2ff7_A Alpha-hemolysin translo 88.8 0.14 4.9E-06 57.1 2.1 25 1351-1375 35-59 (247)
318 1mv5_A LMRA, multidrug resista 88.7 0.15 5E-06 56.9 2.1 25 1351-1375 28-52 (243)
319 1vht_A Dephospho-COA kinase; s 88.7 0.18 6.1E-06 54.9 2.7 22 1352-1373 5-26 (218)
320 1g6h_A High-affinity branched- 88.6 0.15 5.1E-06 57.4 2.1 25 1351-1375 33-57 (257)
321 1oix_A RAS-related protein RAB 88.6 0.18 6.3E-06 53.5 2.7 22 1352-1373 30-51 (191)
322 4g1u_C Hemin import ATP-bindin 88.6 0.15 5.1E-06 57.7 2.0 25 1351-1375 37-61 (266)
323 1ji0_A ABC transporter; ATP bi 88.5 0.15 5.2E-06 56.7 2.1 24 1352-1375 33-56 (240)
324 2d2e_A SUFC protein; ABC-ATPas 88.5 0.18 6.1E-06 56.5 2.6 24 1351-1374 29-52 (250)
325 2zu0_C Probable ATP-dependent 88.5 0.18 6.1E-06 57.1 2.6 24 1351-1374 46-69 (267)
326 3upu_A ATP-dependent DNA helic 88.3 0.45 1.5E-05 58.2 6.3 43 1336-1378 29-72 (459)
327 2pze_A Cystic fibrosis transme 88.3 0.16 5.6E-06 56.0 2.1 25 1351-1375 34-58 (229)
328 3rlf_A Maltose/maltodextrin im 88.3 0.18 6.2E-06 59.7 2.6 24 1352-1375 30-53 (381)
329 2ghi_A Transport protein; mult 88.3 0.16 5.6E-06 57.2 2.1 25 1351-1375 46-70 (260)
330 1uj2_A Uridine-cytidine kinase 88.3 0.18 6.1E-06 56.4 2.4 24 1353-1376 24-47 (252)
331 2qmh_A HPR kinase/phosphorylas 88.3 0.2 6.9E-06 53.6 2.7 26 1351-1376 34-59 (205)
332 1z47_A CYSA, putative ABC-tran 88.2 0.18 6.3E-06 59.2 2.6 25 1351-1375 41-65 (355)
333 2f9l_A RAB11B, member RAS onco 88.2 0.2 7E-06 53.5 2.8 22 1352-1373 6-27 (199)
334 2ius_A DNA translocase FTSK; n 88.2 0.36 1.2E-05 59.5 5.2 48 1351-1405 167-214 (512)
335 2olj_A Amino acid ABC transpor 88.2 0.17 5.7E-06 57.2 2.1 25 1351-1375 50-74 (263)
336 1tq4_A IIGP1, interferon-induc 88.1 0.39 1.3E-05 57.6 5.4 53 1319-1374 39-92 (413)
337 3exa_A TRNA delta(2)-isopenten 88.1 0.16 5.5E-06 58.3 1.9 25 1352-1376 4-28 (322)
338 3d3q_A TRNA delta(2)-isopenten 88.1 0.19 6.4E-06 58.6 2.4 25 1352-1376 8-32 (340)
339 1kgd_A CASK, peripheral plasma 88.0 0.19 6.4E-06 53.1 2.3 26 728-753 4-29 (180)
340 1vpl_A ABC transporter, ATP-bi 88.0 0.17 5.9E-06 56.8 2.1 25 1351-1375 41-65 (256)
341 2ixe_A Antigen peptide transpo 88.0 0.17 5.9E-06 57.3 2.1 25 1351-1375 45-69 (271)
342 2it1_A 362AA long hypothetical 87.9 0.2 6.7E-06 59.2 2.6 24 1352-1375 30-53 (362)
343 2yyz_A Sugar ABC transporter, 87.9 0.2 6.8E-06 59.1 2.6 24 1352-1375 30-53 (359)
344 3tqc_A Pantothenate kinase; bi 87.9 0.22 7.6E-06 57.7 2.9 24 1353-1376 94-117 (321)
345 1sq5_A Pantothenate kinase; P- 87.9 0.22 7.5E-06 57.6 2.9 25 1352-1376 81-105 (308)
346 2ihy_A ABC transporter, ATP-bi 87.7 0.18 6.3E-06 57.3 2.1 24 1352-1375 48-71 (279)
347 2qi9_C Vitamin B12 import ATP- 87.7 0.19 6.4E-06 56.3 2.1 24 1352-1375 27-50 (249)
348 2w0m_A SSO2452; RECA, SSPF, un 87.6 0.26 8.8E-06 53.8 3.1 26 1351-1376 23-48 (235)
349 1g29_1 MALK, maltose transport 87.5 0.21 7.3E-06 59.1 2.6 24 1352-1375 30-53 (372)
350 1v43_A Sugar-binding transport 87.5 0.22 7.4E-06 59.1 2.6 25 1351-1375 37-61 (372)
351 3foz_A TRNA delta(2)-isopenten 87.5 0.19 6.5E-06 57.6 2.0 25 1352-1376 11-35 (316)
352 1z2a_A RAS-related protein RAB 87.5 0.25 8.5E-06 50.6 2.8 22 1352-1373 6-27 (168)
353 3gd7_A Fusion complex of cysti 87.4 0.22 7.4E-06 59.4 2.5 25 1351-1375 47-71 (390)
354 1ltq_A Polynucleotide kinase; 87.4 0.23 8E-06 56.9 2.8 23 1352-1374 3-25 (301)
355 2nq2_C Hypothetical ABC transp 87.3 0.2 6.8E-06 56.2 2.0 25 1351-1375 31-55 (253)
356 2yz2_A Putative ABC transporte 87.3 0.2 6.8E-06 56.6 2.1 25 1351-1375 33-57 (266)
357 1vma_A Cell division protein F 87.3 0.28 9.5E-06 56.6 3.3 26 1352-1377 105-130 (306)
358 2dyk_A GTP-binding protein; GT 87.2 0.26 9E-06 50.0 2.8 21 1353-1373 3-23 (161)
359 2wji_A Ferrous iron transport 87.2 0.25 8.6E-06 51.0 2.6 22 1352-1373 4-25 (165)
360 3crm_A TRNA delta(2)-isopenten 87.2 0.35 1.2E-05 55.9 4.0 37 955-991 203-239 (323)
361 2ce2_X GTPase HRAS; signaling 87.1 0.26 9E-06 50.1 2.7 21 1353-1373 5-25 (166)
362 3a8t_A Adenylate isopentenyltr 87.1 0.31 1.1E-05 56.6 3.6 75 664-740 44-141 (339)
363 2qag_B Septin-6, protein NEDD5 87.1 0.25 8.5E-06 59.4 2.8 21 1354-1374 45-65 (427)
364 1lvg_A Guanylate kinase, GMP k 87.0 0.23 8E-06 53.3 2.3 26 728-753 3-28 (198)
365 2zej_A Dardarin, leucine-rich 87.0 0.22 7.5E-06 52.5 2.1 21 1353-1373 4-24 (184)
366 3eph_A TRNA isopentenyltransfe 87.0 0.41 1.4E-05 56.9 4.5 74 665-740 7-102 (409)
367 1a7j_A Phosphoribulokinase; tr 86.9 0.26 8.8E-06 56.5 2.7 26 1352-1377 6-31 (290)
368 2pjz_A Hypothetical protein ST 86.9 0.22 7.4E-06 56.2 2.1 25 1351-1375 30-54 (263)
369 3nh6_A ATP-binding cassette SU 86.8 0.16 5.3E-06 58.7 0.8 26 1350-1375 79-104 (306)
370 1q3t_A Cytidylate kinase; nucl 86.8 0.27 9.3E-06 54.3 2.7 24 1353-1376 18-41 (236)
371 3d31_A Sulfate/molybdate ABC t 86.7 0.18 6.2E-06 59.2 1.3 24 1352-1375 27-50 (348)
372 1kao_A RAP2A; GTP-binding prot 86.7 0.29 9.9E-06 49.9 2.8 21 1353-1373 5-25 (167)
373 3ney_A 55 kDa erythrocyte memb 86.7 0.25 8.5E-06 53.1 2.3 26 728-753 18-43 (197)
374 1f2t_A RAD50 ABC-ATPase; DNA d 86.7 0.33 1.1E-05 49.7 3.1 24 1353-1376 25-48 (149)
375 2px0_A Flagellar biosynthesis 86.7 0.31 1.1E-05 56.0 3.2 26 1351-1376 105-130 (296)
376 1lw7_A Transcriptional regulat 86.7 0.21 7.1E-06 59.3 1.8 26 1351-1376 170-195 (365)
377 2npi_A Protein CLP1; CLP1-PCF1 86.6 0.26 9E-06 60.1 2.7 31 1350-1380 137-167 (460)
378 2yv5_A YJEQ protein; hydrolase 86.5 0.38 1.3E-05 55.4 3.8 22 1351-1372 165-186 (302)
379 2ged_A SR-beta, signal recogni 86.4 0.3 1E-05 51.5 2.8 23 1351-1373 48-70 (193)
380 1u8z_A RAS-related protein RAL 86.4 0.31 1.1E-05 49.7 2.8 22 1352-1373 5-26 (168)
381 1z0j_A RAB-22, RAS-related pro 86.2 0.32 1.1E-05 49.9 2.8 21 1353-1373 8-28 (170)
382 1g16_A RAS-related protein SEC 86.2 0.31 1.1E-05 49.9 2.7 20 1353-1372 5-24 (170)
383 1ek0_A Protein (GTP-binding pr 86.2 0.32 1.1E-05 49.8 2.8 20 1353-1372 5-24 (170)
384 3tau_A Guanylate kinase, GMP k 86.1 0.29 1E-05 52.9 2.5 28 727-754 6-33 (208)
385 3v9p_A DTMP kinase, thymidylat 86.1 0.35 1.2E-05 53.2 3.1 26 1352-1377 26-51 (227)
386 1wms_A RAB-9, RAB9, RAS-relate 86.1 0.32 1.1E-05 50.3 2.8 21 1352-1372 8-28 (177)
387 1c1y_A RAS-related protein RAP 86.1 0.33 1.1E-05 49.6 2.8 21 1353-1373 5-25 (167)
388 2wsm_A Hydrogenase expression/ 86.1 0.65 2.2E-05 50.3 5.3 42 1334-1376 14-55 (221)
389 2bbs_A Cystic fibrosis transme 86.0 0.25 8.6E-06 56.5 2.0 24 1352-1375 65-88 (290)
390 1z08_A RAS-related protein RAB 86.0 0.33 1.1E-05 49.8 2.7 21 1352-1372 7-27 (170)
391 4edh_A DTMP kinase, thymidylat 85.9 0.38 1.3E-05 52.4 3.3 26 1352-1377 7-32 (213)
392 3tui_C Methionine import ATP-b 85.9 0.3 1E-05 57.5 2.6 25 1351-1375 54-78 (366)
393 2v3c_C SRP54, signal recogniti 85.9 0.98 3.4E-05 54.6 7.2 26 1352-1377 100-125 (432)
394 2gj8_A MNME, tRNA modification 85.8 0.32 1.1E-05 50.7 2.5 22 1352-1373 5-26 (172)
395 2erx_A GTP-binding protein DI- 85.8 0.33 1.1E-05 49.8 2.6 22 1352-1373 4-25 (172)
396 2nzj_A GTP-binding protein REM 85.8 0.33 1.1E-05 50.1 2.6 22 1352-1373 5-26 (175)
397 1ky3_A GTP-binding protein YPT 85.7 0.34 1.2E-05 50.2 2.8 22 1352-1373 9-30 (182)
398 3vaa_A Shikimate kinase, SK; s 85.6 0.28 9.6E-06 52.6 2.0 28 726-753 22-49 (199)
399 3q72_A GTP-binding protein RAD 85.6 0.32 1.1E-05 49.8 2.4 20 1353-1372 4-23 (166)
400 2qor_A Guanylate kinase; phosp 85.6 0.32 1.1E-05 52.4 2.4 28 726-753 9-36 (204)
401 2fn4_A P23, RAS-related protei 85.6 0.35 1.2E-05 50.1 2.7 22 1352-1373 10-31 (181)
402 2wjg_A FEOB, ferrous iron tran 85.6 0.34 1.2E-05 50.9 2.6 22 1352-1373 8-29 (188)
403 3eph_A TRNA isopentenyltransfe 85.5 0.34 1.2E-05 57.5 2.8 25 1352-1376 3-27 (409)
404 1oxx_K GLCV, glucose, ABC tran 85.4 0.19 6.5E-06 59.2 0.6 24 1352-1375 32-55 (353)
405 2h92_A Cytidylate kinase; ross 85.4 0.32 1.1E-05 52.8 2.4 25 1352-1376 4-28 (219)
406 3q85_A GTP-binding protein REM 85.4 0.35 1.2E-05 49.6 2.6 20 1353-1372 4-23 (169)
407 1qhx_A CPT, protein (chloramph 85.3 0.32 1.1E-05 50.8 2.3 25 730-754 4-28 (178)
408 1r2q_A RAS-related protein RAB 85.3 0.37 1.3E-05 49.2 2.8 22 1352-1373 7-28 (170)
409 2oap_1 GSPE-2, type II secreti 85.2 0.48 1.7E-05 58.6 4.1 35 719-753 250-284 (511)
410 2f6r_A COA synthase, bifunctio 85.2 0.35 1.2E-05 55.1 2.7 21 1353-1373 77-97 (281)
411 2qnr_A Septin-2, protein NEDD5 85.2 0.31 1.1E-05 56.1 2.3 24 1351-1374 18-41 (301)
412 2cvh_A DNA repair and recombin 85.2 0.37 1.3E-05 52.1 2.8 23 1351-1373 20-42 (220)
413 1u0l_A Probable GTPase ENGC; p 85.1 0.42 1.4E-05 55.0 3.3 23 1351-1373 169-191 (301)
414 1zj6_A ADP-ribosylation factor 85.1 0.56 1.9E-05 49.2 4.1 23 1350-1372 15-37 (187)
415 4ag6_A VIRB4 ATPase, type IV s 85.1 0.52 1.8E-05 56.3 4.2 28 1350-1377 34-61 (392)
416 3cr8_A Sulfate adenylyltranfer 85.0 0.36 1.2E-05 60.2 2.9 28 1350-1377 368-395 (552)
417 2www_A Methylmalonic aciduria 85.0 0.55 1.9E-05 55.2 4.3 25 1352-1376 75-99 (349)
418 3iuy_A Probable ATP-dependent 84.9 1.4 4.8E-05 47.9 7.4 47 1320-1370 29-76 (228)
419 1cr0_A DNA primase/helicase; R 84.9 0.41 1.4E-05 54.8 3.1 27 1350-1376 34-60 (296)
420 1nrj_B SR-beta, signal recogni 84.9 0.39 1.3E-05 51.9 2.8 23 1351-1373 12-34 (218)
421 3bc1_A RAS-related protein RAB 84.8 0.4 1.4E-05 50.3 2.8 22 1352-1373 12-33 (195)
422 2y8e_A RAB-protein 6, GH09086P 84.8 0.4 1.4E-05 49.5 2.7 21 1352-1372 15-35 (179)
423 2gza_A Type IV secretion syste 84.8 0.55 1.9E-05 55.5 4.2 35 720-754 166-200 (361)
424 1r8s_A ADP-ribosylation factor 84.7 0.42 1.4E-05 48.8 2.8 20 1354-1373 3-22 (164)
425 2qm8_A GTPase/ATPase; G protei 84.7 0.58 2E-05 54.7 4.3 26 1351-1376 55-80 (337)
426 4dsu_A GTPase KRAS, isoform 2B 84.7 0.41 1.4E-05 50.1 2.8 21 1352-1372 5-25 (189)
427 1pui_A ENGB, probable GTP-bind 84.7 0.23 7.9E-06 53.3 0.8 23 1352-1374 27-49 (210)
428 1svi_A GTP-binding protein YSX 84.7 0.38 1.3E-05 50.8 2.5 22 1352-1373 24-45 (195)
429 1upt_A ARL1, ADP-ribosylation 84.7 0.42 1.4E-05 49.1 2.8 22 1351-1372 7-28 (171)
430 1z0f_A RAB14, member RAS oncog 84.6 0.42 1.4E-05 49.4 2.8 22 1352-1373 16-37 (179)
431 2lkc_A Translation initiation 84.4 0.41 1.4E-05 49.6 2.6 22 1351-1372 8-29 (178)
432 1n0w_A DNA repair protein RAD5 84.3 0.42 1.4E-05 52.6 2.8 25 1350-1374 23-47 (243)
433 3tw8_B RAS-related protein RAB 84.3 0.39 1.3E-05 49.7 2.4 21 1352-1372 10-30 (181)
434 3tqf_A HPR(Ser) kinase; transf 84.3 0.47 1.6E-05 49.5 2.9 23 1351-1373 16-38 (181)
435 3iby_A Ferrous iron transport 84.3 0.65 2.2E-05 52.0 4.3 21 1353-1373 3-23 (256)
436 3a00_A Guanylate kinase, GMP k 84.3 0.4 1.4E-05 50.7 2.5 25 729-753 1-25 (186)
437 2qen_A Walker-type ATPase; unk 84.3 0.72 2.5E-05 53.6 4.9 24 1351-1374 31-54 (350)
438 2rcn_A Probable GTPase ENGC; Y 84.3 0.4 1.4E-05 56.4 2.6 24 1351-1374 215-238 (358)
439 3con_A GTPase NRAS; structural 84.2 0.44 1.5E-05 50.1 2.8 22 1352-1373 22-43 (190)
440 2oil_A CATX-8, RAS-related pro 84.2 0.44 1.5E-05 50.3 2.8 22 1352-1373 26-47 (193)
441 3zvl_A Bifunctional polynucleo 84.2 0.27 9.2E-06 59.4 1.2 25 1351-1375 258-282 (416)
442 2hxs_A RAB-26, RAS-related pro 84.1 0.43 1.5E-05 49.4 2.6 21 1353-1373 8-28 (178)
443 2a9k_A RAS-related protein RAL 84.1 0.45 1.6E-05 49.5 2.8 22 1352-1373 19-40 (187)
444 2g6b_A RAS-related protein RAB 84.1 0.46 1.6E-05 49.3 2.8 22 1352-1373 11-32 (180)
445 3clv_A RAB5 protein, putative; 84.1 0.45 1.5E-05 50.3 2.8 21 1353-1373 9-29 (208)
446 2cxx_A Probable GTP-binding pr 84.1 0.42 1.4E-05 50.1 2.5 21 1353-1373 3-23 (190)
447 2bme_A RAB4A, RAS-related prot 84.0 0.45 1.5E-05 49.7 2.7 21 1352-1372 11-31 (186)
448 1z6g_A Guanylate kinase; struc 84.0 0.42 1.4E-05 52.2 2.5 29 725-753 19-47 (218)
449 2gxq_A Heat resistant RNA depe 83.9 1.2 4.1E-05 47.5 6.1 47 1320-1370 10-57 (207)
450 1vec_A ATP-dependent RNA helic 83.9 1.2 4E-05 47.6 6.0 48 1320-1370 12-59 (206)
451 1m7b_A RND3/RHOE small GTP-bin 83.9 0.46 1.6E-05 49.8 2.7 22 1352-1373 8-29 (184)
452 2efe_B Small GTP-binding prote 83.8 0.47 1.6E-05 49.3 2.7 22 1352-1373 13-34 (181)
453 3pqc_A Probable GTP-binding pr 83.8 0.44 1.5E-05 50.1 2.5 21 1352-1372 24-44 (195)
454 1nij_A Hypothetical protein YJ 83.7 0.46 1.6E-05 55.1 2.9 23 1352-1374 5-27 (318)
455 3trf_A Shikimate kinase, SK; a 83.7 0.39 1.3E-05 50.5 2.1 25 729-753 5-29 (185)
456 2bov_A RAla, RAS-related prote 83.6 0.49 1.7E-05 50.4 2.8 22 1352-1373 15-36 (206)
457 2qag_C Septin-7; cell cycle, c 83.5 0.38 1.3E-05 57.9 2.1 22 1353-1374 33-54 (418)
458 1qhl_A Protein (cell division 83.5 0.21 7.1E-06 55.0 -0.2 22 1355-1376 31-52 (227)
459 3kkq_A RAS-related protein M-R 83.5 0.5 1.7E-05 49.3 2.8 20 1353-1372 20-39 (183)
460 3t1o_A Gliding protein MGLA; G 83.3 0.51 1.7E-05 49.7 2.8 22 1352-1373 15-36 (198)
461 1m2o_B GTP-binding protein SAR 83.3 0.54 1.8E-05 49.8 2.9 23 1351-1373 23-45 (190)
462 3qks_A DNA double-strand break 83.2 0.59 2E-05 50.4 3.3 26 1352-1377 24-49 (203)
463 3lxx_A GTPase IMAP family memb 83.1 0.48 1.6E-05 52.3 2.6 22 1352-1373 30-51 (239)
464 2vp4_A Deoxynucleoside kinase; 83.1 0.3 1E-05 53.8 0.9 23 1352-1374 21-43 (230)
465 2gf9_A RAS-related protein RAB 83.1 0.53 1.8E-05 49.5 2.8 22 1352-1373 23-44 (189)
466 1zp6_A Hypothetical protein AT 83.1 0.38 1.3E-05 50.9 1.6 27 726-752 6-32 (191)
467 1mh1_A RAC1; GTP-binding, GTPa 83.0 0.53 1.8E-05 49.0 2.8 20 1353-1372 7-26 (186)
468 2gf0_A GTP-binding protein DI- 83.0 0.52 1.8E-05 49.8 2.7 22 1352-1373 9-30 (199)
469 2iut_A DNA translocase FTSK; n 82.9 0.66 2.3E-05 57.6 3.9 45 1352-1403 215-259 (574)
470 1nlf_A Regulatory protein REPA 82.8 0.59 2E-05 53.0 3.2 27 1350-1376 29-55 (279)
471 3kl4_A SRP54, signal recogniti 82.8 0.55 1.9E-05 56.6 3.1 27 1351-1377 97-123 (433)
472 1g41_A Heat shock protein HSLU 82.8 0.52 1.8E-05 56.9 2.9 36 663-698 53-88 (444)
473 1z06_A RAS-related protein RAB 82.7 0.55 1.9E-05 49.4 2.8 22 1352-1373 21-42 (189)
474 2fg5_A RAB-22B, RAS-related pr 82.7 0.54 1.9E-05 49.7 2.7 22 1352-1373 24-45 (192)
475 2e87_A Hypothetical protein PH 82.7 0.82 2.8E-05 53.9 4.5 22 1352-1373 168-189 (357)
476 3bwd_D RAC-like GTP-binding pr 82.7 0.56 1.9E-05 48.7 2.8 22 1352-1373 9-30 (182)
477 1kag_A SKI, shikimate kinase I 82.7 0.52 1.8E-05 48.9 2.5 25 729-753 4-28 (173)
478 3tmk_A Thymidylate kinase; pho 82.7 0.59 2E-05 51.0 3.0 26 1352-1377 6-31 (216)
479 2pl3_A Probable ATP-dependent 82.6 1.4 4.9E-05 48.1 6.2 48 1320-1370 34-81 (236)
480 3ihw_A Centg3; RAS, centaurin, 82.5 0.56 1.9E-05 49.4 2.7 21 1352-1372 21-41 (184)
481 3qf7_A RAD50; ABC-ATPase, ATPa 82.5 0.58 2E-05 55.4 3.1 23 1353-1375 25-47 (365)
482 3kb2_A SPBC2 prophage-derived 82.4 0.46 1.6E-05 49.1 2.0 23 731-753 3-25 (173)
483 1vg8_A RAS-related protein RAB 82.4 0.57 2E-05 49.9 2.8 22 1352-1373 9-30 (207)
484 2bcg_Y Protein YP2, GTP-bindin 82.3 0.57 1.9E-05 50.1 2.7 22 1352-1373 9-30 (206)
485 3dz8_A RAS-related protein RAB 82.3 0.57 2E-05 49.4 2.7 21 1353-1373 25-45 (191)
486 1fzq_A ADP-ribosylation factor 82.3 0.52 1.8E-05 49.4 2.4 21 1352-1372 17-37 (181)
487 3euj_A Chromosome partition pr 82.3 0.59 2E-05 57.1 3.1 25 1352-1376 30-54 (483)
488 3tkl_A RAS-related protein RAB 82.3 0.59 2E-05 49.3 2.8 20 1353-1372 18-37 (196)
489 1moz_A ARL1, ADP-ribosylation 82.3 0.42 1.4E-05 49.8 1.6 22 1351-1372 18-39 (183)
490 2a5j_A RAS-related protein RAB 82.3 0.59 2E-05 49.3 2.8 21 1353-1373 23-43 (191)
491 3t5g_A GTP-binding protein RHE 82.2 0.56 1.9E-05 48.8 2.5 21 1352-1372 7-27 (181)
492 1zd9_A ADP-ribosylation factor 82.2 0.59 2E-05 49.2 2.8 22 1352-1373 23-44 (188)
493 3oes_A GTPase rhebl1; small GT 82.1 0.59 2E-05 49.8 2.7 23 1351-1373 24-46 (201)
494 2ocp_A DGK, deoxyguanosine kin 82.1 0.51 1.7E-05 52.2 2.3 24 1353-1376 4-27 (241)
495 3c5c_A RAS-like protein 12; GD 82.1 0.6 2.1E-05 49.2 2.8 22 1352-1373 22-43 (187)
496 2atv_A RERG, RAS-like estrogen 82.1 0.6 2.1E-05 49.5 2.8 22 1352-1373 29-50 (196)
497 2axn_A 6-phosphofructo-2-kinas 82.1 0.62 2.1E-05 57.8 3.3 26 1352-1377 36-61 (520)
498 1w5s_A Origin recognition comp 82.0 0.81 2.8E-05 54.6 4.2 27 1351-1377 50-78 (412)
499 3d3q_A TRNA delta(2)-isopenten 81.9 1 3.5E-05 52.4 4.8 31 664-696 11-41 (340)
500 2j41_A Guanylate kinase; GMP, 81.9 0.57 2E-05 50.1 2.5 27 727-753 4-30 (207)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=2e-209 Score=2178.10 Aligned_cols=999 Identities=35% Similarity=0.637 Sum_probs=896.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHH
Q psy4730 90 VRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTR 169 (1513)
Q Consensus 90 ~~t~f~~L~~l~~el~~~~~lW~~~~~w~~~~~~w~~~pf~~ld~~~i~~~l~~~~~~l~~l~k~l~~~~~~~~v~~~l~ 169 (1513)
+...|..+..+.+|+..++.+|..+..|+...+.|.++||.++|++.+++.++.+.+.+.++++.+++++ ++..++
T Consensus 17 ~~~~~~~l~~~~~el~~l~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~l~ 92 (3245)
T 3vkg_A 17 DDDKGGGKVPVEEEIQDLKAVWVELSNTWQEIDSLKETAWSAIIPRKVRKSLEDTLQKLKNLPNRIRQYS----AFDHAQ 92 (3245)
T ss_dssp ------------------------------CHHHHHHCCTTTCCC-----------------------------CHHHHH
T ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHHHHhCcchhhhhH----HHHHHH
Confidence 4457889999999999999999999999999999999999999999999999999999999999999887 578999
Q ss_pred HHHHHHHhhhHHHHHhcCCcccHHhHHHHHHHhCCCcCCCccccHHHHHhhchhhhhhHHHHHHHHhHhHHHHHHHHHHH
Q psy4730 170 SKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKM 249 (1513)
Q Consensus 170 ~~I~~f~~~lpll~~L~np~lk~RHW~~I~~~lg~~~~~~~~~TL~~Ll~l~l~~~~~~I~~I~~~A~~E~~iE~~L~~I 249 (1513)
+.|++|+..+|+|..|+||+||+|||++|++.+|.++.+ +++||++|+++++.+|.+.|++|+..|++|+.||+.|++|
T Consensus 93 ~~i~~f~~~lpll~~L~n~~~~~RHW~~l~~~~g~~~~~-~~~tL~~ll~~~l~~~~~~i~~I~~~A~~E~~iE~~L~~i 171 (3245)
T 3vkg_A 93 NLIKIYLKGNAIITDLHSEAIKDRHWKILKKRLNTNWII-TELTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGV 171 (3245)
T ss_dssp HHHHHHHHHTHHHHHTTSTTCCHHHHHHHHHHTTCCCCT-TSCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhCCccccHHHHHHHHHHhCCCCCc-cCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998766 5899999999999999999999999999999999999999
Q ss_pred HHhhcccEEEeEEeccCCceeecChHHHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4730 250 VTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWM 329 (1513)
Q Consensus 250 ~~~W~~~~f~~~~~~~~~~~il~~~dei~~~Led~l~~L~~m~~S~~~~~~~~~i~~we~kL~~~~~iL~~w~~vQ~~W~ 329 (1513)
++.|++++|++.+|++ ++++|+++||+++.||||++.|++|++|||+++|++++.+|+++|..++++|+.|.+||++|+
T Consensus 172 ~~~W~~~~f~~~~~~~-~~~ll~~~dei~~~led~~~~l~sm~~S~~~~~f~~~v~~We~~L~~~~~il~~W~~vQ~~W~ 250 (3245)
T 3vkg_A 172 REFWTTLELDLVNYQR-KCKLVRGWDDLFNKLAEHLNSISAMKMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWV 250 (3245)
T ss_dssp HHHHHHCBCEEEEETT-TEEEEECHHHHHHHHHHHHHHHHHTTSSTTTTGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhceEEEEEeccC-CeeEeCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCC-chhHhhhCHHHHHhHHhhHHHHHHHHHHhhcCCceeeecccchHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4730 330 YLEPIFS-SEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLF 408 (1513)
Q Consensus 330 yL~~iF~-s~di~~~Lp~e~~~F~~v~~~~~~i~~~~~~~~~v~~~~~~~~l~~~L~~~~~~Le~I~k~L~~yLe~KR~~ 408 (1513)
||+|||+ |+||++|||.|+++|+.||+.|+.+|+.+.++|+|+.+|..+++++.|+++++.|+.|+|+|++|||+||..
T Consensus 251 yLe~IF~~s~DI~~qLP~E~~rF~~vd~~~~~im~~~~~~~~v~~~~~~~~~~~~L~~~~~~Le~iqk~L~~yLE~KR~~ 330 (3245)
T 3vkg_A 251 YLEGIFSGSGDINQLLPAESTRFKSINSEFIAILKKVSGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSA 330 (3245)
T ss_dssp HHHHHC-----CTTTSHHHHHHHHHHHHHHHHHHHHHHHSCBHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceEeecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999996 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccChHHHHHHHhcCCCcchHHHHHHHHhhcccceecccc-eeEEEeeecCCcEEEccCcccCCCCCCcHHHHHHH
Q psy4730 409 FPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDS-LEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQ 487 (1513)
Q Consensus 409 FPRfyFLSd~eLL~ils~~~dp~~i~~~l~k~F~gI~~l~~~~~-~~I~g~~s~~GE~l~l~~~I~~~~~~g~ve~WL~~ 487 (1513)
|||||||||+|||+|||+++||..+|+||+|||+||++|.|+++ ..|+||+|.+||+|+|.+||++.. .|+||.||.+
T Consensus 331 FPRFyFlSd~eLLeILs~~~dp~~vq~hl~K~F~~I~~l~f~~~~~~i~~m~S~eGE~v~~~~~v~~~~-~~~ve~WL~~ 409 (3245)
T 3vkg_A 331 FARFYFVGDEDLLEIIGNSKDIIKIQKHFRKMFAGLANLTLDDEKTTIIGMSSAEGETVTFKKPISIAN-GPKIHEWLTM 409 (3245)
T ss_dssp SGGGGGSCHHHHHHHHHGGGCGGGTGGGGGGTCSSCCEEEECTTSCEEEEEECTTSCEEEEEEEEESSS-SCCHHHHHHH
T ss_pred CchhhccCcHHHHHHHHcCCChHHHHHHHHHHHhhhheEEecCCCCEEEEEEcCCCCEEEeCCccccCC-CCCHHHHHHH
Confidence 99999999999999999999999999999999999999999764 457899999999999999986532 4899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh------ccchhhhhhcCCchhhhhhhhhhhcHHHHHHHhhc---------cHHHHHHHH
Q psy4730 488 VEDLMIKSLQDICMMALGAYY------KSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGR---------KLDAMLDKS 552 (1513)
Q Consensus 488 le~~mk~sL~~~i~~~~~~~~------~~~~~~Wi~~~p~Qv~ll~~qI~wT~~ve~al~~~---------~l~~~~~~~ 552 (1513)
||++|+.||+..+.+|+.+|. ..++.+|+.+||+||++++.||+||++||+||.+. .++.+.+++
T Consensus 410 le~~m~~tl~~~~~~~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wT~~ve~al~~~~~~~~~~~~~l~~~~~~~ 489 (3245)
T 3vkg_A 410 VESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTT 489 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCcccHHHHHHHCcHHHHHHHHHheeHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 999999999999999999987 35689999999999999999999999999999853 488899999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcchHHHHHHHH-cccCCcccchhhhhcceEeecC------eEEEEEcce
Q psy4730 553 VKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVE-SKVTQVEDFAWMSQLRYYNVNN------LVNVCMITT 625 (1513)
Q Consensus 553 ~~~l~~l~~~~r~~l~~~~r~ki~~LI~~~vh~rDiv~~L~~-~~v~~~~~f~W~~qlRyy~~~~------~i~v~~~~~ 625 (1513)
..+|+.++.++++++++.+|.|+++||+++||+|||++.|++ .++.+.++|+|++||||||+++ .|.|+++++
T Consensus 490 ~~~l~~l~~~v~~~l~~~~R~kl~~Lit~~VH~RDvv~~L~~~~~v~~~~dF~W~~qlRyy~~~~~~~~~~~~~v~~~~~ 569 (3245)
T 3vkg_A 490 QMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANA 569 (3245)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCSTTCHHHHTSEEEEECSSSSSSGGGEEEEETTE
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHhhhheeeccccCCcCceEEEEEcCc
Confidence 999999999999999999999999999999999999999999 9999999999999999999864 599999999
Q ss_pred EEEeeeeccCCccceeecccchHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCCCCCCCCC
Q psy4730 626 TVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRP 705 (1513)
Q Consensus 626 ~~~YgyEY~G~~~rlV~Tplt~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~f~~~~~~ 705 (1513)
+|+|||||+|+++|||+||||||||+++++|+++++||+|.|||||||||++|+||+++|++|++|||+++++
T Consensus 570 ~f~YgyEYlG~~~rLViTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------- 642 (3245)
T 3vkg_A 570 TFYYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------- 642 (3245)
T ss_dssp EEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC-------
T ss_pred eecCccccCCCCCCCcCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhh
Q psy4730 706 SDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRR 785 (1513)
Q Consensus 706 ~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~ 785 (1513)
+.
T Consensus 643 ----------------------------------------------------~~-------------------------- 644 (3245)
T 3vkg_A 643 ----------------------------------------------------LQ-------------------------- 644 (3245)
T ss_dssp ----------------------------------------------------HH--------------------------
T ss_pred ----------------------------------------------------HH--------------------------
Confidence 10
Q ss_pred ccCCCCCCCCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHH
Q psy4730 786 RKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIK 865 (1513)
Q Consensus 786 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1513)
T Consensus 645 -------------------------------------------------------------------------------- 644 (3245)
T 3vkg_A 645 -------------------------------------------------------------------------------- 644 (3245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCC
Q psy4730 866 INLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMN 945 (1513)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~ 945 (1513)
T Consensus 645 -------------------------------------------------------------------------------- 644 (3245)
T 3vkg_A 645 -------------------------------------------------------------------------------- 644 (3245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhh
Q psy4730 946 TITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRD 1025 (1513)
Q Consensus 946 ~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd 1025 (1513)
.
T Consensus 645 -------------------------------------------------------------------------------~ 645 (3245)
T 3vkg_A 645 -------------------------------------------------------------------------------A 645 (3245)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred HHHHHhhhcccCCcccCChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHhhccccCcccchhh
Q psy4730 1026 FAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADD 1105 (1513)
Q Consensus 1026 ~~~~~~g~~~~~~~~~~~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1105 (1513)
+.|++.|+.+
T Consensus 646 ~g~i~~G~~~---------------------------------------------------------------------- 655 (3245)
T 3vkg_A 646 MSRIFVGLCQ---------------------------------------------------------------------- 655 (3245)
T ss_dssp HHHHHHHHHH----------------------------------------------------------------------
T ss_pred HHHHHhhHhh----------------------------------------------------------------------
Confidence 0111224332
Q ss_pred cccceeccccccccccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccc-cceEEecCceEEEEEecCCCC
Q psy4730 1106 LRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFE-GTEISLNPTSMIFITMNPGYA 1184 (1513)
Q Consensus 1106 ~~~l~f~~fv~~~~~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~-g~~i~~~p~~~iFiTmNp~y~ 1184 (1513)
+|+|+|||||||++.+|||++++++..|+.++......+.++ |+.|+++|+|++||||||||+
T Consensus 656 ----------------~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~ 719 (3245)
T 3vkg_A 656 ----------------CGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYA 719 (3245)
T ss_dssp ----------------HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGG
T ss_pred ----------------cCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCcc
Confidence 899999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CCCCCchhHHhhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhh
Q psy4730 1185 GRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSL 1264 (1513)
Q Consensus 1185 gr~~LP~nLk~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l 1264 (1513)
||++||+|||++||||+|+.||+.+|+|++|++.||.+|+.||+|++++|++|++|||+|.|||||||++|+||+.||++
T Consensus 720 gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l 799 (3245)
T 3vkg_A 720 GRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI 799 (3245)
T ss_dssp GCCCSCHHHHTTEEEEECCSCCHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred CcccChHHHHhhcEEEEEeCCCHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhC--------CC------------ChHHHHHHHHHHhhcCCCCcccchhhHHHHhhccCCCCCCCCCCchHHHHHHHH
Q psy4730 1265 KIKY--------PE------------KDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKI 1324 (1513)
Q Consensus 1265 ~~~~--------~~------------~~E~~~l~~ai~~~~~pkl~~~d~~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~ 1324 (1513)
+|+. |+ ..|+.++++||+++|+|||+.+|.++|.++++|+||+++.|..+++.+.++|.+
T Consensus 800 kr~~~~~~~~~~~~~~~~~~~~~~~~~~E~~illralrd~nlpKl~~~D~plF~~li~DlFPgv~~~~~~~~~l~~ai~~ 879 (3245)
T 3vkg_A 800 KRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQE 879 (3245)
T ss_dssp HHSCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCGGGHHHHHHHHHHHSTTCCCCCCCCHHHHHHHHH
T ss_pred HHhhhhhcccccccccccccccccccccHHHHHHHHHHHhccCCCchhhHHHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Confidence 9988 55 579999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCccccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChh
Q psy4730 1325 NLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMG 1404 (1513)
Q Consensus 1325 ~~~~~~l~~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~ 1404 (1513)
+|.+.||++++.|+.||+|||+++.+||||||||||||||||||++|++|++++.+. ++..++|||||+|++
T Consensus 880 ~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~--------~~~~~~iNPKait~~ 951 (3245)
T 3vkg_A 880 IAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNI--------KSEAHVMDPKAITKD 951 (3245)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTC--------EEEEEEECTTTSCHH
T ss_pred HHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCC--------CceEEEECCCCCchh
Confidence 999999999999999999999999999999999999999999999999999987542 367899999999999
Q ss_pred hccccccCCCCCCccCHHHHHHHHhhcc---CCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEE
Q psy4730 1405 QLYGEFDSASHEWRDGILAKTFREMAVS---TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLI 1481 (1513)
Q Consensus 1405 eL~G~~~~~t~eW~DG~l~~~lR~~~~~---~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~i 1481 (1513)
||||++||+|+||+||+|++++|+++.+ +..+++||||||||||.|||||||||||||+|||||||||++||+|+++
T Consensus 952 eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~~~~WIvfDGpVDa~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~li 1031 (3245)
T 3vkg_A 952 QLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVM 1031 (3245)
T ss_dssp HHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGGEEEEEEEESCCCHHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEE
T ss_pred hhceeecCCCCeeeccHHHHHHHHHHhcccCCCCCceEEEECCCCCHHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEE
Confidence 9999999999999999999999998743 3456899999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCcchhhccEEEEeeCCCCccccC
Q psy4730 1482 FECENLEFASPATVSRVGMIYFELKCISWTTF 1513 (1513)
Q Consensus 1482 FE~~~l~~asPatvsRcg~v~~~~~~~~w~~~ 1513 (1513)
|||+||++||||||||||||||+++++||+|+
T Consensus 1032 FEv~dL~~ASPATVSRcGmVy~~~~~l~~~~~ 1063 (3245)
T 3vkg_A 1032 FEVQDLKYATLATISRCGMVWFSEEILTTQMI 1063 (3245)
T ss_dssp EEESCCTTCCHHHHHTSEEEECCTTSSCHHHH
T ss_pred EEeccccccChhhheeeeEEEEcccccCchHH
Confidence 99999999999999999999999999999974
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=5.7e-174 Score=1822.19 Aligned_cols=855 Identities=30% Similarity=0.498 Sum_probs=808.2
Q ss_pred HHhHhHHHHHHHHHHHHHhhcccEEEeEEeccCCceeecChHHHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHH
Q psy4730 234 LSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLIN 313 (1513)
Q Consensus 234 ~~A~~E~~iE~~L~~I~~~W~~~~f~~~~~~~~~~~il~~~dei~~~Led~l~~L~~m~~S~~~~~~~~~i~~we~kL~~ 313 (1513)
.+|++|+.||+.|++|+++|++++|++.+|++ ++++++++|++++.|+||++.|++|++|||+++|++++.+|+++|..
T Consensus 215 ~~AskE~~iE~~L~~i~~~W~~~~f~~~~~~~-~~~~l~~~d~i~~~l~d~~~~l~~m~~s~~~~~f~~~~~~w~~~L~~ 293 (2695)
T 4akg_A 215 PPKSDEFVIEKSLNRIKKFWKEAQYEVIEHSS-GLKLVREWDVLEQACKEDLEELVSMKASNYYKIFEQDCLDLESKLTK 293 (2695)
T ss_dssp CC----CHHHHHHHHHHHHHTSCCCEEEECSS-SCEEEECTHHHHHHHHHHHHHHHHTSSCSTTTTTHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHhhceEEEEEEecC-CeEEECCHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999974 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccC-CchhHhhhCHHHHHhHHhhHHHHHHHHHHhhcCCceeeecccchHHHHHHHHHHHHH
Q psy4730 314 MQDILDIWLQVQGTWMYLEPIF-SSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLE 392 (1513)
Q Consensus 314 ~~~iL~~w~~vQ~~W~yL~~iF-~s~di~~~Lp~e~~~F~~v~~~~~~i~~~~~~~~~v~~~~~~~~l~~~L~~~~~~Le 392 (1513)
++++|+.|.+||++|+||+||| +|+||++|||.|+++|+.||+.|+.+|+.+.++|+|+++|..+++++.|+++++.|+
T Consensus 294 ~~~~l~~w~~vQ~~W~yLe~iF~~s~di~~qLp~e~~~F~~vd~~~~~im~~~~~~~~v~~~~~~~~~~~~L~~~~~~Le 373 (2695)
T 4akg_A 294 LSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVIHIPNFDTTLKLTIDSLK 373 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCCSGGGGGSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeecccccHHHHHHHHHHHHH
Confidence 9999999999999999999999 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCcccccChHHHHHHHhcCCCcchHHHHHHHHhhcccceecccceeEEEeeecCCcEEEccCcc
Q psy4730 393 LIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEKVALSGLI 472 (1513)
Q Consensus 393 ~I~k~L~~yLe~KR~~FPRfyFLSd~eLL~ils~~~dp~~i~~~l~k~F~gI~~l~~~~~~~I~g~~s~~GE~l~l~~~I 472 (1513)
.|+|+|++|||+||..|||||||||+|||+|||+++||..+|+|++|||+||++|.|++ ..|+||+|.+||+|+|.+||
T Consensus 374 ~iqk~L~~yLe~KR~~FPRFyFlsd~eLLeiLs~~~dp~~vq~hl~k~F~~i~~l~f~~-~~i~~m~s~egE~v~~~~~v 452 (2695)
T 4akg_A 374 MIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESIIFLE-DFITGVRSVEGEVLNLNEKI 452 (2695)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHCHHHHHHHHHTTTTSGGGHHHHHHHTSSEEEEEECS-SEEEEEEETTSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCcceecCcHHHHHHHhcCCCHHHHHHHHHHHhhhhhhEEecC-ceEEEEEcCCCCEEEeCCce
Confidence 99999999999999999999999999999999999999999999999999999999995 48999999999999999998
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhhhcCCchhhhhhhhhhhcHHHHHHHhhccHHHHHHH
Q psy4730 473 RPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYK-SERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDK 551 (1513)
Q Consensus 473 ~~~~~~g~ve~WL~~le~~mk~sL~~~i~~~~~~~~~-~~~~~Wi~~~p~Qv~ll~~qI~wT~~ve~al~~~~l~~~~~~ 551 (1513)
.+. ..|+||.||.+||++|+.||++.+.+|+.+|.. .++.+|+.+||+||++++.||+||+++|+|+.++.+..+.+.
T Consensus 453 ~~~-~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wt~~ve~a~~~~~~~~~~~~ 531 (2695)
T 4akg_A 453 ELK-DSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEVVVSKYIFQAILLSAQVMWTELVEKCLQTNQFSKYWKE 531 (2695)
T ss_dssp ECC-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ecC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHChHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 754 246899999999999999999999999999986 789999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcchHHHHHHHHcccCCcccchhhhhcceEeecC------eEEEEEcce
Q psy4730 552 SVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYYNVNN------LVNVCMITT 625 (1513)
Q Consensus 552 ~~~~l~~l~~~~r~~l~~~~r~ki~~LI~~~vh~rDiv~~L~~~~v~~~~~f~W~~qlRyy~~~~------~i~v~~~~~ 625 (1513)
+.++++.+...+ +.+++..|.|+++||++++|+|||++.|++.++.+.++|+|++||||||+++ .|.|+++++
T Consensus 532 ~~~~~~~l~~~~-~~~~~~~r~k~~~li~~~vh~rDvv~~l~~~~v~~~~~f~W~~qlR~y~~~~~~~~~~~~~v~~~~~ 610 (2695)
T 4akg_A 532 VDMKIKGLLDKL-NKSSDNVKKKIEALLVEYLHFNNVIGQLKNCSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQSGY 610 (2695)
T ss_dssp HHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHSCEEEECSSCSCGGGTEEEEETTE
T ss_pred HHHHHHHHHHHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchHhHHhcceEEEcCccccccceeEEEEcCe
Confidence 888888887655 4678889999999999999999999999999999999999999999999865 589999999
Q ss_pred EEEeeeeccCCccceeecccchHHHHHHHHHHHhhcCCCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCCCCCCCCC
Q psy4730 626 TVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRP 705 (1513)
Q Consensus 626 ~~~YgyEY~G~~~rlV~Tplt~r~~~~l~~al~~~~g~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~f~~~~~~ 705 (1513)
+|+|||||+|+++|||+||+|+|||.++++|+++++||+|.||||||||+++|+||+++|++|++|||+++++
T Consensus 611 ~~~YgyEYlG~~~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------- 683 (2695)
T 4akg_A 611 LLQYKFEYIGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------- 683 (2695)
T ss_dssp EEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC-------
T ss_pred EeeccccccCCCCcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHhhhh
Q psy4730 706 SDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRR 785 (1513)
Q Consensus 706 ~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~~~~ 785 (1513)
+
T Consensus 684 ----------------------------------------------------~--------------------------- 684 (2695)
T 4akg_A 684 ----------------------------------------------------Y--------------------------- 684 (2695)
T ss_dssp ----------------------------------------------------H---------------------------
T ss_pred ----------------------------------------------------h---------------------------
Confidence 1
Q ss_pred ccCCCCCCCCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChhHHHHHHH
Q psy4730 786 RKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIK 865 (1513)
Q Consensus 786 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1513)
T Consensus 685 -------------------------------------------------------------------------------- 684 (2695)
T 4akg_A 685 -------------------------------------------------------------------------------- 684 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCC
Q psy4730 866 INLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMN 945 (1513)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~ 945 (1513)
T Consensus 685 -------------------------------------------------------------------------------- 684 (2695)
T 4akg_A 685 -------------------------------------------------------------------------------- 684 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhh
Q psy4730 946 TITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRD 1025 (1513)
Q Consensus 946 ~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd 1025 (1513)
.|
T Consensus 685 ------------------------------------------------------------------------------~~ 686 (2695)
T 4akg_A 685 ------------------------------------------------------------------------------QV 686 (2695)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------hH
Confidence 00
Q ss_pred HHHHHhhhcccCCcccCChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHhhccccCcccchhh
Q psy4730 1026 FAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADD 1105 (1513)
Q Consensus 1026 ~~~~~~g~~~~~~~~~~~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1105 (1513)
+.+++.|+.
T Consensus 687 lg~~~~g~~----------------------------------------------------------------------- 695 (2695)
T 4akg_A 687 LSRLLVGIT----------------------------------------------------------------------- 695 (2695)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred hhHHHHHHH-----------------------------------------------------------------------
Confidence 011111322
Q ss_pred cccceeccccccccccCCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCCCCC
Q psy4730 1106 LRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAG 1185 (1513)
Q Consensus 1106 ~~~l~f~~fv~~~~~~~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~y~g 1185 (1513)
.+|+|+|||||||++++|||++++++..|+.++..+...+.++|+.+++||+|++|+||||||+|
T Consensus 696 ---------------~~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g 760 (2695)
T 4akg_A 696 ---------------QIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNG 760 (2695)
T ss_dssp ---------------HHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSS
T ss_pred ---------------hcCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccC
Confidence 27999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHhhhhcccccCCChHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHHHHhhhhh
Q psy4730 1186 RTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLK 1265 (1513)
Q Consensus 1186 r~~LP~nLk~lFR~v~~~~PD~~~I~ei~L~~~GF~~a~~la~ki~~~~~l~~~~ls~q~~yd~glR~lk~vl~~a~~l~ 1265 (1513)
|++||+|||++||||+|+.||...|+|++|++.||.+++.||+|++.+|++|++++|+|.|||||||++|+||+.||.++
T Consensus 761 ~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 761 RSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp SCCCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred cccccHHHHhheEEEEeeCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHhhcCCCCcccchhhHHHHhhccCCCCCCCCCCchHHHHHHHHHHHHcCccccHHHHHHHHHHH
Q psy4730 1266 IKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVY 1345 (1513)
Q Consensus 1266 ~~~~~~~E~~~l~~ai~~~~~pkl~~~d~~lf~~li~~~Fp~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~~k~~qL~ 1345 (1513)
+..+ .|+.++++|++++++||++.+|.++|.++++|+||++..| .+++.+.+++.+.+.+.++++++.|+.|++|||
T Consensus 841 r~~~--~e~~~l~~al~~~~lpk~~~~D~~lf~~li~dlFp~~~~~-~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~ 917 (2695)
T 4akg_A 841 SEFG--EGEKTVVESLKRVILPSLGDTDELVFKDELSKIFDSAGTP-LNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFY 917 (2695)
T ss_dssp HHSC--SSHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHCCCCSCC-SSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred ccCC--cHHHHHHHHHHHhccccCchhhHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 9885 6778999999999999999999999999999999999888 788899999999999999999999999999999
Q ss_pred HHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHH
Q psy4730 1346 EMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKT 1425 (1513)
Q Consensus 1346 ~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~ 1425 (1513)
+++.+||||||||||||||||+|++|++|++++.+. ++.+++||||++|++||||++|++|++|+||+|+++
T Consensus 918 e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~--------~~~~~~inpk~~t~~el~G~~d~~t~eW~DGils~~ 989 (2695)
T 4akg_A 918 YMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGH--------ANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSI 989 (2695)
T ss_dssp HHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCC--------EEEEEEECTTTSCHHHHTTEECTTTCCEECCSHHHH
T ss_pred HHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCC--------CceEEEeCCCCCCHHHhcceecCCCCeEecChHHHH
Confidence 999999999999999999999999999999987543 357889999999999999999999999999999999
Q ss_pred HHHhhccCC----CCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEE
Q psy4730 1426 FREMAVSTT----PDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMI 1501 (1513)
Q Consensus 1426 lR~~~~~~~----~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v 1501 (1513)
+|+++.+.. ..++|||||||+||.|||+|||||||||+|||||||||++||+|+++|||+||++||||||||||||
T Consensus 990 ~R~~~~~~~~~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~dL~~ASPATVSRcGmv 1069 (2695)
T 4akg_A 990 LRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATITRCGLL 1069 (2695)
T ss_dssp HHHHHTCCCSSCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESCCTTSCHHHHHHSEEE
T ss_pred HHHHHhccccccCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecccccCCccceeeeeEE
Confidence 999876432 2389999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCccccC
Q psy4730 1502 YFELKCISWTTF 1513 (1513)
Q Consensus 1502 ~~~~~~~~w~~~ 1513 (1513)
|++++++||+|+
T Consensus 1070 y~~~~~l~~~~~ 1081 (2695)
T 4akg_A 1070 WFSTDVCSISSK 1081 (2695)
T ss_dssp ECCSCSSCHHHH
T ss_pred EecCCcCChHHH
Confidence 999999999984
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=9.3e-53 Score=592.84 Aligned_cols=355 Identities=23% Similarity=0.386 Sum_probs=305.2
Q ss_pred CCCccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHh
Q psy4730 703 LRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKL 782 (1513)
Q Consensus 703 ~~~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~ 782 (1513)
..+.+++|||.||+|+.++++.++..++||||+||||||||+++.++++++.+ +....+|||++|+++.+|..+++++
T Consensus 1278 ~~~~~ilVPT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~li~~~L~~l~~--~~~~~infS~~Tta~~l~~~~e~~~ 1355 (3245)
T 3vkg_A 1278 VASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPD--FEVVSLNFSSATTPELLLKTFDHHC 1355 (3245)
T ss_dssp TTCTTCCCCCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHHHHHHGGGCTT--EEEEEECCCTTCCHHHHHHHHHHHE
T ss_pred CCcccceecchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHHHhCCC--CceEEEEeeCCCCHHHHHHHHhhcc
Confidence 46789999999999999999999999999999999999999999999987754 4457899999999999999999999
Q ss_pred hhhcc---C-CCCCCC-CceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCCh
Q psy4730 783 DRRRK---G-VYGPAM-GKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDR 857 (1513)
Q Consensus 783 ~~~~~---~-~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (1513)
+++++ | .|+|+. |+++|+|+
T Consensus 1356 e~~~~~~~G~~~~p~~~Gk~~VlFi------------------------------------------------------- 1380 (3245)
T 3vkg_A 1356 EYKRTPSGETVLRPTQLGKWLVVFC------------------------------------------------------- 1380 (3245)
T ss_dssp EEEECTTSCEEEEESSTTCEEEEEE-------------------------------------------------------
T ss_pred eEEeccCCCcccCCCcCCceEEEEe-------------------------------------------------------
Confidence 97764 3 567764 99999998
Q ss_pred hHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEE
Q psy4730 858 DELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYI 937 (1513)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~ 937 (1513)
||+|||..|+||+|||+|+|||++|||||||+++.+|+.++|++|+
T Consensus 1381 ----------------------------------DDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~v 1426 (3245)
T 3vkg_A 1381 ----------------------------------DEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFV 1426 (3245)
T ss_dssp ----------------------------------TTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEE
T ss_pred ----------------------------------cccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEE
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred EeecCC----CCCCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCC
Q psy4730 938 TAMIPT----MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPI 1013 (1513)
Q Consensus 938 ~a~~~~----~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1513)
|||||| |++|+|||+|||+++++++|+.+++.+||++++.+++. |.++++.++..++++++++|..+.+.|+|+
T Consensus 1427 aamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~l~--~~p~l~~~~~~lv~ati~ly~~v~~~~lp~ 1504 (3245)
T 3vkg_A 1427 GACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMK--LLPNLRSFADNLTDAMVEFYSESQKRFTPD 1504 (3245)
T ss_dssp EEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHHTT--SCGGGTTSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred EEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999997 79999999999999999999999999999999988653 566788899999999999999999999995
Q ss_pred CCCCccccchhhHHHHHhhhccc-CCcccCChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhhhHHHHh
Q psy4730 1014 PSKSHYVFNLRDFAKVIMGLTQL-PASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFL 1092 (1513)
Q Consensus 1014 ~~~~hy~fnlrd~~~~~~g~~~~-~~~~~~~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1513)
.|+||+|||||++||+||++++ .+..+.++..++|||.||+.|||+|||++++||+||..+++++++++|+...
T Consensus 1505 -~k~HY~FnLRDLsrv~qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~---- 1579 (3245)
T 3vkg_A 1505 -IQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVN---- 1579 (3245)
T ss_dssp -TSTTCCCCHHHHHHHHHHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSC----
T ss_pred -cCCCccccHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcch----
Confidence 9999999999999999999987 4455678999999999999999999999999999999999999999886411
Q ss_pred hccccCcccchhhcccceeccccccccccCCc-------cccccccchhh----HhHHHHHHHHHHHHHHHHHhhccccc
Q psy4730 1093 KNKITDKTISADDLRSLFFGNFLGNTIIFPGA-------WACFDEFNRIE----LEVLSVVAQQVQSIQLATIAKLKKFM 1161 (1513)
Q Consensus 1093 ~~~~~~~~~~~~~~~~l~f~~fv~~~~~~~G~-------W~~~de~n~l~----~~vLs~v~~~i~~i~~~l~~~~~~~~ 1161 (1513)
.....++++||+|++..+..... =..+++||+.. ..+..-+.+||.+|.|++++++++.+
T Consensus 1580 ---------~~~~~~pllf~~f~~~~Y~~v~~~~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaL 1650 (3245)
T 3vkg_A 1580 ---------LDALKRPILYSNWLTKDYQPVNRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHAL 1650 (3245)
T ss_dssp ---------GGGGCSSCCCCSSCC----CCCHHHHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEE
T ss_pred ---------hhhcccCcchhhhccccCccCCHHHHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeE
Confidence 11123688999999743221110 01345555432 12224478999999999999999887
Q ss_pred ccc
Q psy4730 1162 FEG 1164 (1513)
Q Consensus 1162 ~~g 1164 (1513)
+-|
T Consensus 1651 LVG 1653 (3245)
T 3vkg_A 1651 LIG 1653 (3245)
T ss_dssp EEE
T ss_pred Eec
Confidence 766
No 4
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=6.2e-51 Score=574.87 Aligned_cols=290 Identities=23% Similarity=0.377 Sum_probs=268.7
Q ss_pred CCCccccccchhhhhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhccCcCcccceeeccccccChhHHHHHHHHHh
Q psy4730 703 LRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKL 782 (1513)
Q Consensus 703 ~~~~~~~v~t~~~~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~~~~~~~~~~fs~~t~~~~~q~~i~~~~ 782 (1513)
..+.+++|||.||+|+.++++.++..++|+||+||||||||+++++++++.. .+....++||+.|++..+|..+++.+
T Consensus 1241 ~~~~~iiVpT~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~la~~~l~~~~--~~~~~~infsa~ts~~~~~~~i~~~~ 1318 (2695)
T 4akg_A 1241 VMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSS--LYDVVGINFSKDTTTEHILSALHRHT 1318 (2695)
T ss_dssp GSCSSCCCCCHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHHHHHHHHSCS--SCEEEEEECCTTCCHHHHHHHHHHHB
T ss_pred cCccceeEeccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHhcCC--CCceEEEEeecCCCHHHHHHHHHHHh
Confidence 4577899999999999999999999999999999999999999999988763 35667899999999999999999998
Q ss_pred hhhc---cCCCCCC-CCceEEEEecccccccCCcchhHHHHHHHHhhcCCccccccccccccccccccCCCcCCCCCChh
Q psy4730 783 DRRR---KGVYGPA-MGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRD 858 (1513)
Q Consensus 783 ~~~~---~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (1513)
++++ +..|||+ .|+++|+|+
T Consensus 1319 ~~~~~~~g~~~~P~~~gk~~VlFi-------------------------------------------------------- 1342 (2695)
T 4akg_A 1319 NYVTTSKGLTLLPKSDIKNLVLFC-------------------------------------------------------- 1342 (2695)
T ss_dssp CCEEETTTEEEEEBSSSSCEEEEE--------------------------------------------------------
T ss_pred hhccccCCccccCCCCCceEEEEe--------------------------------------------------------
Confidence 7653 4467885 789999998
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEE
Q psy4730 859 ELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYIT 938 (1513)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~ 938 (1513)
||+|||..|+||+|+++|+|||++|+|||||+.+..++.++|++++|
T Consensus 1343 ---------------------------------DEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIa 1389 (2695)
T 4akg_A 1343 ---------------------------------DEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVG 1389 (2695)
T ss_dssp ---------------------------------ETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEE
T ss_pred ---------------------------------cccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEE
Confidence 99999999999999999999999999999999989999999999999
Q ss_pred eecCC----CCCCChhhhccceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy4730 939 AMIPT----MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIP 1014 (1513)
Q Consensus 939 a~~~~----~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1513)
||||| |+.|+|||+|||+++++++|+.+++.+||++++.+++. |.++++.++++|+++|+++|+++.+.|+| |
T Consensus 1390 A~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~--~~~~v~~~~~~lv~ati~~y~~v~~~~~~-~ 1466 (2695)
T 4akg_A 1390 ACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFK--LVPEFRSYTEPFARASVHLYNECKARYST-G 1466 (2695)
T ss_dssp EECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHTT--SSGGGGGGHHHHHHHHHHHHHHHHHHSCT-T
T ss_pred ecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHHHHHcCC-c
Confidence 99997 68999999999999999999999999999999999873 67789999999999999999999999987 5
Q ss_pred CCCccccchhhHHHHHhhhcccCCc-ccCChhhHHHhhhhhHHHHHhhhcCChhhHHHHHHHHHHHHHhhhhh
Q psy4730 1015 SKSHYVFNLRDFAKVIMGLTQLPAS-HCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGT 1086 (1513)
Q Consensus 1015 ~~~hy~fnlrd~~~~~~g~~~~~~~-~~~~~~~~~rl~~hE~~rvf~drl~~~~d~~~~~~~~~~~~~~~~~~ 1086 (1513)
.|+||+|||||++||+||++.+.++ .+.++..++|||.||+.|||+|||++++||+||.+++.++++++|+.
T Consensus 1467 ~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~ 1539 (2695)
T 4akg_A 1467 LQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPN 1539 (2695)
T ss_dssp TCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCC
T ss_pred cCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998654 47889999999999999999999999999999999999999988853
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.36 E-value=1.8e-11 Score=161.33 Aligned_cols=127 Identities=17% Similarity=0.255 Sum_probs=92.7
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC----ChhhccccccCCCCCCc----cCHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI----TMGQLYGEFDSASHEWR----DGILAK 1424 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~----t~~eL~G~~~~~t~eW~----DG~l~~ 1424 (1513)
+++|+||||+|||++.+.+++.++ ..+.++|...+ +..+|+|.- .++. .|.++.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~--------------~~~~~i~~s~~~~~~~~~~l~g~~----~g~~g~~~~~~l~~ 551 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG--------------IELLRFDMSEYMERHTVSRLIGAP----PGYVGFDQGGLLTD 551 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--------------CEEEEEEGGGCSSSSCCSSSCCCC----SCSHHHHHTTHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc--------------CCEEEEechhhcchhhHhhhcCCC----CCCcCccccchHHH
Confidence 699999999999999999998874 23455654433 467888852 1222 367778
Q ss_pred HHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC--------------
Q psy4730 1425 TFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-------------- 1488 (1513)
Q Consensus 1425 ~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~-------------- 1488 (1513)
.+|+. ....++|| .-+++...+.|..+||+. .++-..|..+.+ .++.+|+-+..-.
T Consensus 552 ~~~~~------~~~vl~lDEi~~~~~~~~~~Ll~~le~~-~~~~~~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~ 623 (758)
T 1r6b_X 552 AVIKH------PHAVLLLDEIEKAHPDVFNILLQVMDNG-TLTDNNGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQD 623 (758)
T ss_dssp HHHHC------SSEEEEEETGGGSCHHHHHHHHHHHHHS-EEEETTTEEEEC-TTEEEEEEECSSCC-------------
T ss_pred HHHhC------CCcEEEEeCccccCHHHHHHHHHHhcCc-EEEcCCCCEEec-CCeEEEEecCcchhhhhhcccCccccc
Confidence 88764 24899999 567888999999999864 566677877776 5677777654321
Q ss_pred -----------CCCcchhhcc-EEEEeeC
Q psy4730 1489 -----------FASPATVSRV-GMIYFEL 1505 (1513)
Q Consensus 1489 -----------~asPatvsRc-g~v~~~~ 1505 (1513)
...|+..+|| .+|.|.|
T Consensus 624 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 652 (758)
T 1r6b_X 624 NSTDAMEEIKKIFTPEFRNRLDNIIWFDH 652 (758)
T ss_dssp ----CHHHHHHHSCHHHHTTCSEEEECCC
T ss_pred hHHHHHHHHHHhcCHHHHhhCCcceeeCC
Confidence 5689999999 6677765
No 6
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.35 E-value=1.2e-10 Score=155.00 Aligned_cols=134 Identities=20% Similarity=0.301 Sum_probs=87.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCcc-CHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWRD-GILAKTF 1426 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~D-G~l~~~l 1426 (1513)
.+++|+||||+|||++.+.|+..+..- ...+..+|+..+. ..+|+|.- |.-.++.. |.|+.++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~-----------~~~~i~i~~~~~~~~~~~s~l~g~~-~~~~G~~~~g~l~~~~ 656 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT-----------EEAMIRIDMTEYMEKHAVSRLIGAP-PGYVGYEEGGQLTEAV 656 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS-----------GGGEEEECTTTCCSSGGGGGC---------------CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC-----------CCcEEEEechhccchhHHHHHcCCC-CCCcCccccchHHHHH
Confidence 589999999999999999999887531 1245667766554 56788752 11223444 8888888
Q ss_pred HHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC------------------
Q psy4730 1427 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN------------------ 1486 (1513)
Q Consensus 1427 R~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~------------------ 1486 (1513)
++.. ...++|| +.+++.....|..+||+.+ ++-..|..+.+ .++.+|+-+.-
T Consensus 657 ~~~~------~~vl~lDEi~~l~~~~~~~Ll~~l~~~~-~~~~~g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~l 728 (854)
T 1qvr_A 657 RRRP------YSVILFDEIEKAHPDVFNILLQILDDGR-LTDSHGRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERI 728 (854)
T ss_dssp HHCS------SEEEEESSGGGSCHHHHHHHHHHHTTTE-ECCSSSCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHH
T ss_pred HhCC------CeEEEEecccccCHHHHHHHHHHhccCc-eECCCCCEecc-CCeEEEEecCcChHHHhhhcccccchHHH
Confidence 8642 3689999 6788999999999998764 55555666665 34446664431
Q ss_pred --------CCCCCcchhhcc-EEEEeeC
Q psy4730 1487 --------LEFASPATVSRV-GMIYFEL 1505 (1513)
Q Consensus 1487 --------l~~asPatvsRc-g~v~~~~ 1505 (1513)
-....|+..+|| .+|.+.|
T Consensus 729 ~~~v~~~~~~~f~~~l~~Rl~~~i~~~p 756 (854)
T 1qvr_A 729 RDEVFKVLQQHFRPEFLNRLDEIVVFRP 756 (854)
T ss_dssp HHHHHHHHHTTSCHHHHHTCSBCCBCCC
T ss_pred HHHHHHHHHhhCCHHHHHhcCeEEeCCC
Confidence 134679999999 5555654
No 7
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.33 E-value=1.3e-10 Score=152.78 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=82.5
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhcc
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 1432 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~ 1432 (1513)
+++|+||||+|||++.+.++..+..- ...+.++|...+ .+.+.. ..|.++.++|+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~-----------~~~~i~i~~s~~-----~~~~~~-----~~~~l~~~~~~~~-- 579 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD-----------EESMIRIDMSEY-----MEKHST-----SGGQLTEKVRRKP-- 579 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC-----------TTCEEEEEGGGG-----CSSCCC-----C---CHHHHHHCS--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC-----------CcceEEEechhc-----cccccc-----ccchhhHHHHhCC--
Confidence 59999999999999999999987421 123556664433 232221 1677888887652
Q ss_pred CCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC------------CCCcchhhcc
Q psy4730 1433 TTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE------------FASPATVSRV 1498 (1513)
Q Consensus 1433 ~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~------------~asPatvsRc 1498 (1513)
...++|| +.+++.....|..+||+. .++...|..+. +.++++|+-+..-. ...|+..+||
T Consensus 580 ----~~vl~lDEi~~~~~~~~~~Ll~~le~g-~~~~~~g~~~~-~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl 653 (758)
T 3pxi_A 580 ----YSVVLLDAIEKAHPDVFNILLQVLEDG-RLTDSKGRTVD-FRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRI 653 (758)
T ss_dssp ----SSEEEEECGGGSCHHHHHHHHHHHHHS-BCC-----CCB-CTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTS
T ss_pred ----CeEEEEeCccccCHHHHHHHHHHhccC-eEEcCCCCEec-cCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhC
Confidence 3699999 678899999999999874 56666676654 56778888665321 2679999999
Q ss_pred -EEEEeeC
Q psy4730 1499 -GMIYFEL 1505 (1513)
Q Consensus 1499 -g~v~~~~ 1505 (1513)
.+|+|.|
T Consensus 654 ~~~i~~~~ 661 (758)
T 3pxi_A 654 DEIIVFHS 661 (758)
T ss_dssp SEEEECC-
T ss_pred CeEEecCC
Confidence 6777765
No 8
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.49 E-value=9.4e-07 Score=100.84 Aligned_cols=118 Identities=15% Similarity=0.181 Sum_probs=72.9
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceE--eec
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNI--ISI 960 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~--~~~ 960 (1513)
+|+||++.... ...+.|.++++.+.++..+.. ...-.++.+|+|+|++ ...+.++|++||.. +.+
T Consensus 104 l~lDEi~~l~~------~~q~~Ll~~l~~~~~~~~g~~-~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~l 176 (265)
T 2bjv_A 104 LFLDELATAPM------MVQEKLLRVIEYGELERVGGS-QPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQL 176 (265)
T ss_dssp EEEESGGGSCH------HHHHHHHHHHHHCEECCCCC---CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEEC
T ss_pred EEEechHhcCH------HHHHHHHHHHHhCCeecCCCc-ccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeC
Confidence 34588884432 256777888888877644432 3334588999999996 34688999999975 455
Q ss_pred CCCCh--HHHHHHHHHHhhhhhhc-------cchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHh
Q psy4730 961 DSFNE--ATLSKIFTSVLDWHFSK-------GFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIM 1031 (1513)
Q Consensus 961 ~~~~~--~~l~~i~~~~l~~~~~~-------~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~ 1031 (1513)
++... +++..+...++...... .++++.... . ...+|-.|+|.+.++++
T Consensus 177 p~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~-----------L-----------~~~~~~gn~reL~~~l~ 234 (265)
T 2bjv_A 177 PPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET-----------L-----------LNYRWPGNIRELKNVVE 234 (265)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH-----------H-----------HHSCCTTHHHHHHHHHH
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH-----------H-----------HhCCCCCCHHHHHHHHH
Confidence 55554 46666666655432111 122221111 1 02367789999999988
Q ss_pred hhcc
Q psy4730 1032 GLTQ 1035 (1513)
Q Consensus 1032 g~~~ 1035 (1513)
....
T Consensus 235 ~~~~ 238 (265)
T 2bjv_A 235 RSVY 238 (265)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 9
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.19 E-value=3.3e-06 Score=98.51 Aligned_cols=84 Identities=14% Similarity=0.292 Sum_probs=63.5
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC-------------------------
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------- 943 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------- 943 (1513)
+|+||++.... .....|.++++.+.+.+.. ...+.+.++.+|+|+|++
T Consensus 123 l~lDEi~~l~~------~~~~~Ll~~le~~~~~~~~-~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~ 195 (311)
T 4fcw_A 123 ILFDAIEKAHP------DVFNILLQMLDDGRLTDSH-GRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVL 195 (311)
T ss_dssp EEEETGGGSCH------HHHHHHHHHHHHSEEECTT-SCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHH
T ss_pred EEEeChhhcCH------HHHHHHHHHHhcCEEEcCC-CCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHH
Confidence 34588874432 3677888888888777543 345566678899999983
Q ss_pred CCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhhh
Q psy4730 944 MNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 944 ~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
...++|.|++|| .++.+.+|+.+++..|...++...
T Consensus 196 ~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 196 QQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp HHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred HHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 346889999999 678899999999999999877653
No 10
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.13 E-value=3e-05 Score=90.32 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=74.4
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceEeecCC
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNIISIDS 962 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~~~~~~ 962 (1513)
+|+||+..-..+ ....|-.+++.+.+...+. ....-.|+.+|+|+|++ ...+.+.|+.||+.+.+.-
T Consensus 100 L~LDEi~~l~~~------~q~~Ll~~l~~~~~~~~g~-~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~l 172 (304)
T 1ojl_A 100 LFLDEIGDISPL------MQVRLLRAIQEREVQRVGS-NQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEM 172 (304)
T ss_dssp EEEESCTTCCHH------HHHHHHHHHHSSBCCBTTB-CCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEEC
T ss_pred EEEeccccCCHH------HHHHHHHHHhcCEeeecCC-cccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEec
Confidence 456998833222 3444555666665543332 22233589999999987 2457889999997766444
Q ss_pred CC----hHHHHHHHHHHhhhhhh------ccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhh
Q psy4730 963 FN----EATLSKIFTSVLDWHFS------KGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMG 1032 (1513)
Q Consensus 963 ~~----~~~l~~i~~~~l~~~~~------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g 1032 (1513)
|+ .+++..+...++..+-. ..|.++...... ..+|--|+|.+.++++.
T Consensus 173 PpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~----------------------~~~wpGnvReL~~~l~~ 230 (304)
T 1ojl_A 173 PSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLI----------------------HYDWPGNIRELENAIER 230 (304)
T ss_dssp CCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH----------------------HCCCSSHHHHHHHHHHH
T ss_pred cCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHH----------------------cCCCCCCHHHHHHHHHH
Confidence 44 45777777776654311 123332221110 12456699999999877
Q ss_pred hcccCCcccCChhhH
Q psy4730 1033 LTQLPASHCKAPDKM 1047 (1513)
Q Consensus 1033 ~~~~~~~~~~~~~~~ 1047 (1513)
..........+...+
T Consensus 231 ~~~~~~~~~i~~~~l 245 (304)
T 1ojl_A 231 AVVLLTGEYISEREL 245 (304)
T ss_dssp HHHHCCSSSBCGGGS
T ss_pred HHHhCCCCcccHHhh
Confidence 654433333344333
No 11
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.06 E-value=5e-06 Score=88.85 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=48.4
Q ss_pred HhhccC-CC-CCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC----CCCChhhhccceEeecCCC
Q psy4730 890 ILDDLN-MP-QKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM----NTITGRLLRHMNIISIDSF 963 (1513)
Q Consensus 890 ~~dd~n-~p-~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~----~~~~~r~~~~f~~~~~~~~ 963 (1513)
++||++ ++ ..+..+.....++|+.+++.+ ++.++++++++. ..+++++.+||..+.+++|
T Consensus 120 ~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p 185 (195)
T 1jbk_A 120 FIDELHTMVGAGKADGAMDAGNMLKPALARG--------------ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEP 185 (195)
T ss_dssp EEETGGGGTT------CCCCHHHHHHHHHTT--------------SCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCC
T ss_pred EEeCHHHHhccCcccchHHHHHHHHHhhccC--------------CeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCC
Confidence 348887 32 222344567788999888753 456788888762 4789999999999999999
Q ss_pred ChHHHHHHH
Q psy4730 964 NEATLSKIF 972 (1513)
Q Consensus 964 ~~~~l~~i~ 972 (1513)
+.++...|+
T Consensus 186 ~~~~~~~il 194 (195)
T 1jbk_A 186 SVEDTIAIL 194 (195)
T ss_dssp CHHHHHTTC
T ss_pred CHHHHHHHh
Confidence 999876653
No 12
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.02 E-value=9.9e-06 Score=106.48 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=59.7
Q ss_pred hhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC-----------CCCChhhhccc-eEe
Q psy4730 891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM-----------NTITGRLLRHM-NII 958 (1513)
Q Consensus 891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~-----------~~~~~r~~~~f-~~~ 958 (1513)
+||+..... .+...|.++++.|.+.+.+. ..+...|+.+|+|+|.+- ..+.|.|++|| .++
T Consensus 585 lDEi~~~~~------~~~~~Ll~~le~g~~~~~~g-~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i 657 (758)
T 3pxi_A 585 LDAIEKAHP------DVFNILLQVLEDGRLTDSKG-RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEII 657 (758)
T ss_dssp EECGGGSCH------HHHHHHHHHHHHSBCC------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEE
T ss_pred EeCccccCH------HHHHHHHHHhccCeEEcCCC-CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEE
Confidence 488874432 47888999999988887653 335557999999999652 23899999999 789
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q psy4730 959 SIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 959 ~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+++|+.+++..|....+..
T Consensus 658 ~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 658 VFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp ECC--CHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987765
No 13
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.00 E-value=5.8e-06 Score=97.49 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=57.6
Q ss_pred hhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC----CCCCChhhhccceE-eecCCCCh
Q psy4730 891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT----MNTITGRLLRHMNI-ISIDSFNE 965 (1513)
Q Consensus 891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~----~~~~~~r~~~~f~~-~~~~~~~~ 965 (1513)
+||+|.... .....|.+.++.+.+...+ .....-.++.+++++||. +..+++++++||.+ +.+++|+.
T Consensus 115 iDEi~~~~~------~~~~~Ll~~l~~~~~~~~g-~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~ 187 (331)
T 2r44_A 115 ADEVNRSPA------KVQSALLECMQEKQVTIGD-TTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDK 187 (331)
T ss_dssp EETGGGSCH------HHHHHHHHHHHHSEEEETT-EEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCH
T ss_pred EEccccCCH------HHHHHHHHHHhcCceeeCC-EEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCH
Confidence 388885432 3567777888876554322 222223378889999986 24599999999996 99999999
Q ss_pred HHHHHHHHHHhh
Q psy4730 966 ATLSKIFTSVLD 977 (1513)
Q Consensus 966 ~~l~~i~~~~l~ 977 (1513)
++...|....+.
T Consensus 188 ~~~~~il~~~~~ 199 (331)
T 2r44_A 188 ESELEVMRRVSN 199 (331)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhccc
Confidence 999999887654
No 14
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.99 E-value=6.5e-06 Score=97.67 Aligned_cols=146 Identities=20% Similarity=0.285 Sum_probs=95.1
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccccc-------------------ceeEEEecCCCCChhhccccc
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEF-------------------KTGYKIINPKSITMGQLYGEF 1410 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~-------------------~~~~~~inp~~~t~~eL~G~~ 1410 (1513)
...+|+|+||||+|||++.+.+++.+............+. ...+. --|...+..+++|..
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~ 122 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVV-DLPLGVSEDRVVGAL 122 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEE-EECTTCCHHHHHCEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCccc-ccCCCcchhhheeec
Confidence 4568999999999999999999987753100000000000 00111 224555677888874
Q ss_pred cCC------CCCCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEE
Q psy4730 1411 DSA------SHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 1482 (1513)
Q Consensus 1411 ~~~------t~eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iF 1482 (1513)
+.. ...+..|.+..+ ....+++| +.+++.-.+.|..+|++.....-..|.....|.++.++.
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~a----------~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~ 192 (350)
T 1g8p_A 123 DIERAISKGEKAFEPGLLARA----------NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVG 192 (350)
T ss_dssp CHHHHHHHCGGGEECCHHHHH----------TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEE
T ss_pred hhhhhhcCCceeecCceeeec----------CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEE
Confidence 321 134566665433 23799999 567787788888888776544555688888888888888
Q ss_pred eecCCC-CCCcchhhccEE-EEeeCC
Q psy4730 1483 ECENLE-FASPATVSRVGM-IYFELK 1506 (1513)
Q Consensus 1483 E~~~l~-~asPatvsRcg~-v~~~~~ 1506 (1513)
-+.... ...|+..+||++ +.+.+-
T Consensus 193 ~~n~~~~~l~~~L~~R~~~~~~l~~~ 218 (350)
T 1g8p_A 193 SGNPEEGDLRPQLLDRFGLSVEVLSP 218 (350)
T ss_dssp EECSCSCCCCHHHHTTCSEEEECCCC
T ss_pred EeCCCCCCCCHHHHhhcceEEEcCCC
Confidence 765433 688999999998 777653
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.99 E-value=3.2e-05 Score=90.80 Aligned_cols=46 Identities=15% Similarity=0.077 Sum_probs=40.0
Q ss_pred cceEEEEeecCCCCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.+++|+|.+ ..+++.++||| ..++++.|+.+....|+..++..
T Consensus 148 ~~v~vI~atn~~-~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 194 (322)
T 1xwi_A 148 DGILVLGATNIP-WVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT 194 (322)
T ss_dssp TTEEEEEEESCT-TTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCc-ccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 468899999988 46899999999 67999999999999999887654
No 16
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.92 E-value=7.5e-06 Score=103.01 Aligned_cols=85 Identities=22% Similarity=0.326 Sum_probs=54.1
Q ss_pred hhccCCCCCccCCCCChHHHHHHHHhcC---CccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHH
Q psy4730 891 LDDLNMPQKETYGAQPAVELLRQIIDHK---HLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEAT 967 (1513)
Q Consensus 891 ~dd~n~p~~~~~~~q~~le~lr~~~~~~---~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~ 967 (1513)
+|++..-..+..|. +.+.|.++++.+ .|.+......+...++.+|+|+|++. .++|.|++||.++.++.|+.+.
T Consensus 181 lDEid~l~~~~~~~--~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~-~l~~aL~~R~~vi~~~~~~~~e 257 (543)
T 3m6a_A 181 LDEIDKMSSDFRGD--PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA-TIPGPLRDRMEIINIAGYTEIE 257 (543)
T ss_dssp EEESSSCC-----------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT-TSCHHHHHHEEEEECCCCCHHH
T ss_pred EhhhhhhhhhhccC--HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc-cCCHHHHhhcceeeeCCCCHHH
Confidence 48877443332221 223334444432 23333333344557889999999864 6889999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy4730 968 LSKIFTSVLDW 978 (1513)
Q Consensus 968 l~~i~~~~l~~ 978 (1513)
...|+..++..
T Consensus 258 ~~~Il~~~l~~ 268 (543)
T 3m6a_A 258 KLEIVKDHLLP 268 (543)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 17
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.89 E-value=1.6e-05 Score=104.58 Aligned_cols=80 Identities=15% Similarity=0.313 Sum_probs=65.2
Q ss_pred hccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC------------------------CCC
Q psy4730 892 DDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM------------------------NTI 947 (1513)
Q Consensus 892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~------------------------~~~ 947 (1513)
||+.....+ +++.|.++++.|.+.|.. ...+...++.+|+|+|++. ..+
T Consensus 564 DEi~~~~~~------~~~~Ll~~le~~~~~~~~-g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 636 (758)
T 1r6b_X 564 DEIEKAHPD------VFNILLQVMDNGTLTDNN-GRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIF 636 (758)
T ss_dssp ETGGGSCHH------HHHHHHHHHHHSEEEETT-TEEEECTTEEEEEEECSSCC-----------------CHHHHHHHS
T ss_pred eCccccCHH------HHHHHHHHhcCcEEEcCC-CCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhc
Confidence 888755433 789999999999888865 3455568999999999851 168
Q ss_pred Chhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730 948 TGRLLRHM-NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 948 ~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
+|.|++|| .++.+++|+.+++..|....+..
T Consensus 637 ~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~ 668 (758)
T 1r6b_X 637 TPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_dssp CHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHhhCCcceeeCCCCHHHHHHHHHHHHHH
Confidence 89999999 77999999999999999987754
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.89 E-value=1.4e-05 Score=91.95 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=38.6
Q ss_pred ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.+|+|+|++ ..+++.++| ||. .+.++.|+.++...|+...+..
T Consensus 156 ~~~vI~ttn~~-~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 156 DVKIIGATNRP-DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp SEEEEEECSCG-GGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCc-hhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence 67889999887 458999998 996 6999999999999999887654
No 19
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.88 E-value=9.3e-06 Score=100.40 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=41.4
Q ss_pred ceEEEEeecCCC----CCCChhhhccceEeecCCCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPTM----NTITGRLLRHMNIISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~~----~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
++.+|+|++++. ..+++.|.|||..+.+++|+.+++..|+..++..+
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~ 341 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRY 341 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTS
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHH
Confidence 578999999983 37899999999999999999999999999877653
No 20
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.87 E-value=5.3e-05 Score=88.15 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=72.9
Q ss_pred HhhccC-CCCC--ccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC----CCCChhhhccc-eEeecC
Q psy4730 890 ILDDLN-MPQK--ETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM----NTITGRLLRHM-NIISID 961 (1513)
Q Consensus 890 ~~dd~n-~p~~--~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~----~~~~~r~~~~f-~~~~~~ 961 (1513)
++||+. +... +.-..+..+..|.++++.+. .++.+|+++++++ ..++|.|.+|| ..+.++
T Consensus 135 ~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~------------~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~ 202 (309)
T 3syl_A 135 FIDEAYYLYRPDNERDYGQEAIEILLQVMENNR------------DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFP 202 (309)
T ss_dssp EEETGGGSCCCC---CCTHHHHHHHHHHHHHCT------------TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEEC
T ss_pred EEEChhhhccCCCcccccHHHHHHHHHHHhcCC------------CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcC
Confidence 347776 2211 11234456677777777532 4678888888762 24579999999 889999
Q ss_pred CCChHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHhhhc
Q psy4730 962 SFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLT 1034 (1513)
Q Consensus 962 ~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~g~~ 1034 (1513)
+|+.+++..|+..++...- ..+.++........+ ... ...++.-|.|++.++++-..
T Consensus 203 ~~~~~~~~~il~~~l~~~~-~~~~~~~~~~l~~~~-------~~~--------~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 203 DYSDEELFEIAGHMLDDQN-YQMTPEAETALRAYI-------GLR--------RNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp CCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHHH-------HHH--------TTSSSCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-------HHh--------ccCCCCCcHHHHHHHHHHHH
Confidence 9999999999999887532 235554332221111 111 12345557898888877543
No 21
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.86 E-value=5.6e-05 Score=87.96 Aligned_cols=134 Identities=20% Similarity=0.290 Sum_probs=91.7
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCCCCCCcc-CHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWRD-GILAKTF 1426 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~t~eW~D-G~l~~~l 1426 (1513)
++++|+||||||||++.+.+++.+..-. ..+..+++..++ ..+++|... ...++.. |.+..++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~ 115 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTE-----------EAMIRIDMTEYMEKHAVSRLIGAPP-GYVGYEEGGQLTEAV 115 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCG-----------GGEEEEEGGGCCSTTHHHHHHCCCT-TSTTTTTCCHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCC-----------cceEEeecccccccccHHHhcCCCC-ccccccccchHHHHH
Confidence 6899999999999999999998875311 224555555444 567888543 2234544 7888888
Q ss_pred HHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC------------------
Q psy4730 1427 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN------------------ 1486 (1513)
Q Consensus 1427 R~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~------------------ 1486 (1513)
+... ...+++| ..+++.....|-.+|++. .+.-..|..+.++ ++.+|+-+..
T Consensus 116 ~~~~------~~vl~lDEi~~l~~~~~~~Ll~~le~~-~~~~~~~~~~~~~-~~iiI~ttn~~~~~i~~~~~~~~~~~~l 187 (311)
T 4fcw_A 116 RRRP------YSVILFDAIEKAHPDVFNILLQMLDDG-RLTDSHGRTVDFR-NTVIIMTSNLGSPLILEGLQKGWPYERI 187 (311)
T ss_dssp HHCS------SEEEEEETGGGSCHHHHHHHHHHHHHS-EEECTTSCEEECT-TEEEEEEESTTHHHHHTTTTSCCCSSTH
T ss_pred HhCC------CeEEEEeChhhcCHHHHHHHHHHHhcC-EEEcCCCCEEECC-CcEEEEecccCHHHHHhhhcccccHHHH
Confidence 7642 3699999 456777888888888765 3444556666655 4446666654
Q ss_pred --------CCCCCcchhhcc-EEEEeeC
Q psy4730 1487 --------LEFASPATVSRV-GMIYFEL 1505 (1513)
Q Consensus 1487 --------l~~asPatvsRc-g~v~~~~ 1505 (1513)
.....|+..+|| .++.+.|
T Consensus 188 ~~~~~~~~~~~~~~~l~~R~~~~~~~~p 215 (311)
T 4fcw_A 188 RDEVFKVLQQHFRPEFLNRLDEIVVFRP 215 (311)
T ss_dssp HHHTHHHHHHHSCHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHhCCHHHHhcCCeEEEeCC
Confidence 235789999999 4556655
No 22
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.85 E-value=2.4e-05 Score=99.39 Aligned_cols=84 Identities=14% Similarity=0.187 Sum_probs=60.6
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCcc-ccCCceeeeecceEEEEeecCC--CC----------CCChhhhccc
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLY-DFQTVTRVDLVDIIYITAMIPT--MN----------TITGRLLRHM 955 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~y-d~~~~~~~~~~~~~~~~a~~~~--~~----------~~~~r~~~~f 955 (1513)
+|+||++....+ ..+.|.+.++.|.+. ++.......-.++.++||+||+ +. .+++.+++||
T Consensus 395 l~IDEid~l~~~------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RF 468 (595)
T 3f9v_A 395 AVIDEIDKMRDE------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRF 468 (595)
T ss_dssp ECCTTTTCCCSH------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGC
T ss_pred EEeehhhhCCHh------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhC
Confidence 567999955433 578888999988775 3223333334589999999997 33 8999999999
Q ss_pred e--EeecCCCChHHHHHHHHHHhhhh
Q psy4730 956 N--IISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 956 ~--~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
. .+..++|+.+ ...|...++..+
T Consensus 469 Dl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 469 DLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp SCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred eEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 3 4667777777 777777777643
No 23
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.83 E-value=0.00013 Score=86.16 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=53.3
Q ss_pred hccCCCCCccCCCCChHHHHHHHHhcCCccccC------CceeeeecceEEEEeecCCCCCCChhhhccc-eEeecCCCC
Q psy4730 892 DDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQ------TVTRVDLVDIIYITAMIPTMNTITGRLLRHM-NIISIDSFN 964 (1513)
Q Consensus 892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~------~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~ 964 (1513)
||+..-. ....+.|...++.+.+.-.. .........+.+++|+|+... +++.+++|| ..+.+++|+
T Consensus 113 DEi~~l~------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~-l~~~L~~R~~~~i~l~~~~ 185 (338)
T 3pfi_A 113 DEIHRLS------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGM-LSNPLRDRFGMQFRLEFYK 185 (338)
T ss_dssp ETGGGCC------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGG-SCHHHHTTCSEEEECCCCC
T ss_pred echhhcC------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccc-cCHHHHhhcCEEeeCCCcC
Confidence 7776222 12566667777765442110 111122225899999998643 889999999 889999999
Q ss_pred hHHHHHHHHHHhhh
Q psy4730 965 EATLSKIFTSVLDW 978 (1513)
Q Consensus 965 ~~~l~~i~~~~l~~ 978 (1513)
.+++..|+...+..
T Consensus 186 ~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 186 DSELALILQKAALK 199 (338)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998877654
No 24
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.80 E-value=0.00014 Score=85.42 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=38.7
Q ss_pred ceEEEEeecCCCCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.+++|+|.+. .+++.++||| ..++++.|+.+....|+..++..
T Consensus 154 ~v~vi~atn~~~-~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 154 GVLVLGATNIPW-QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 199 (322)
T ss_dssp CEEEEEEESCGG-GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred ceEEEEecCChh-hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc
Confidence 578899998774 4899999999 56999999999999999987764
No 25
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.78 E-value=1.5e-05 Score=84.79 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=44.0
Q ss_pred HhhccCCCC-C-c-cCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCC----CCCChhhhccceEeecCC
Q psy4730 890 ILDDLNMPQ-K-E-TYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM----NTITGRLLRHMNIISIDS 962 (1513)
Q Consensus 890 ~~dd~n~p~-~-~-~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~----~~~~~r~~~~f~~~~~~~ 962 (1513)
++||+..-. . . ..+.+....+|+.+++.+ ++.++++++++. ..+++++.+||..+.++.
T Consensus 120 ~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~ 185 (187)
T 2p65_A 120 FIDEIHTVVGAGAVAEGALDAGNILKPMLARG--------------ELRCIGATTVSEYRQFIEKDKALERRFQQILVEQ 185 (187)
T ss_dssp EETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT--------------CSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCS
T ss_pred EEeCHHHhcccccccccchHHHHHHHHHHhcC--------------CeeEEEecCHHHHHHHHhccHHHHHhcCcccCCC
Confidence 348887322 1 1 334467788888887642 456888888762 468999999999999999
Q ss_pred CC
Q psy4730 963 FN 964 (1513)
Q Consensus 963 ~~ 964 (1513)
|+
T Consensus 186 p~ 187 (187)
T 2p65_A 186 PS 187 (187)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 26
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=4.1e-05 Score=91.22 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=38.9
Q ss_pred cceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.++||+|.|. .|+|.|+| ||. .++++.|+.+.-..|+..++..
T Consensus 286 ~~V~vIaATNrpd-~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 334 (405)
T 4b4t_J 286 KNIKIIMATNRLD-ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK 334 (405)
T ss_dssp CCEEEEEEESCSS-SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCeEEEeccCChh-hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC
Confidence 3678899999875 49999999 886 5999999999999999877654
No 27
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.77 E-value=3.1e-05 Score=91.29 Aligned_cols=130 Identities=16% Similarity=0.162 Sum_probs=88.1
Q ss_pred HHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCC-CCChhhccccccC--CCCC--CccCHH
Q psy4730 1348 ILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK-SITMGQLYGEFDS--ASHE--WRDGIL 1422 (1513)
Q Consensus 1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~-~~t~~eL~G~~~~--~t~e--W~DG~l 1422 (1513)
+....+++|+||||+|||++.+.+++.++. .+..++.. ..+..+++|.... ..+. |..|.+
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~la~~~~~--------------~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l 108 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNTLAKTMDL--------------DFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPV 108 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHHHHHHTTC--------------CEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTT
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHHhCC--------------CeEEEecCCCCChhhcCCceeecCCCCceEeccCcc
Confidence 334679999999999999999999887642 33445432 3456778876432 1222 344443
Q ss_pred HHHHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC-----CCCcchh
Q psy4730 1423 AKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-----FASPATV 1495 (1513)
Q Consensus 1423 ~~~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~-----~asPatv 1495 (1513)
...++++|. .+++.....|..++++. .+++ .|.....|.++.++.-+.... ...||..
T Consensus 109 -------------~~~vl~iDEi~~~~~~~~~~Ll~~l~~~-~~~~-~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~ 173 (331)
T 2r44_A 109 -------------FSNFILADEVNRSPAKVQSALLECMQEK-QVTI-GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQV 173 (331)
T ss_dssp -------------CSSEEEEETGGGSCHHHHHHHHHHHHHS-EEEE-TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHH
T ss_pred -------------cccEEEEEccccCCHHHHHHHHHHHhcC-ceee-CCEEEECCCCEEEEEecCCCcccCcccCCHHHH
Confidence 137999994 56777778888888765 4555 688888888777664333222 2789999
Q ss_pred hccEE-EEeeCC
Q psy4730 1496 SRVGM-IYFELK 1506 (1513)
Q Consensus 1496 sRcg~-v~~~~~ 1506 (1513)
+||++ +.+++-
T Consensus 174 ~Rf~~~i~i~~p 185 (331)
T 2r44_A 174 DRFMMKIHLTYL 185 (331)
T ss_dssp TTSSEEEECCCC
T ss_pred hheeEEEEcCCC
Confidence 99997 777654
No 28
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.76 E-value=5.2e-05 Score=88.08 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCccccCCceeeeecceEEEEeecCC---CCCCChhhhccce-EeecCCCChHHHHHHHHH
Q psy4730 908 VELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT---MNTITGRLLRHMN-IISIDSFNEATLSKIFTS 974 (1513)
Q Consensus 908 le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~---~~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~ 974 (1513)
...|.++++.+.++.+.. .....++.+++++++. ...++|+|++||. .+.+++|+.+++..|...
T Consensus 145 ~~~Ll~~le~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 145 QRDLLPLVEGSTVSTKHG--MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp HHHHHHHHHCCEEEETTE--EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred HHHHHHHhcCCeEecccc--cccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 345566677665554332 2344578889887642 3579999999996 499999999999999884
No 29
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=6e-05 Score=91.14 Aligned_cols=46 Identities=26% Similarity=0.146 Sum_probs=38.3
Q ss_pred ceEEEEeecCCCCCCChhhhcc--ceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRH--MNI-ISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~--f~~-~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
++.+|||+|.|. .|+|.|+|+ |-. ++++.|+.+.-..|+..++..+
T Consensus 320 ~vivI~ATNrp~-~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (437)
T 4b4t_L 320 QTKIIMATNRPD-TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV 368 (437)
T ss_dssp SSEEEEEESSTT-SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS
T ss_pred CeEEEEecCCch-hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC
Confidence 577899999874 589999986 764 9999999999999998877654
No 30
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.75 E-value=0.00015 Score=79.10 Aligned_cols=68 Identities=10% Similarity=0.128 Sum_probs=49.1
Q ss_pred hccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHH
Q psy4730 892 DDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKI 971 (1513)
Q Consensus 892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i 971 (1513)
||+..... ...+.|+.+++.. -.++.++++++.+ ..+.+++.+||..+.+++|+.+++..+
T Consensus 109 De~~~l~~------~~~~~l~~~l~~~------------~~~~~~i~~~~~~-~~~~~~l~~r~~~i~~~~~~~~~~~~~ 169 (226)
T 2chg_A 109 DEADALTA------DAQAALRRTMEMY------------SKSCRFILSCNYV-SRIIEPIQSRCAVFRFKPVPKEAMKKR 169 (226)
T ss_dssp ETGGGSCH------HHHHHHHHHHHHT------------TTTEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHH
T ss_pred eChhhcCH------HHHHHHHHHHHhc------------CCCCeEEEEeCCh-hhcCHHHHHhCceeecCCCCHHHHHHH
Confidence 77664332 2456677777642 1246677777765 457899999999999999999999999
Q ss_pred HHHHhhh
Q psy4730 972 FTSVLDW 978 (1513)
Q Consensus 972 ~~~~l~~ 978 (1513)
+...+..
T Consensus 170 l~~~~~~ 176 (226)
T 2chg_A 170 LLEICEK 176 (226)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887643
No 31
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.75 E-value=8.1e-05 Score=91.35 Aligned_cols=46 Identities=15% Similarity=0.080 Sum_probs=39.9
Q ss_pred cceEEEEeecCCCCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.+|+|+|++ ..+++.++||| ..++++.|+.+....|+..++..
T Consensus 270 ~~v~vI~atn~~-~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 316 (444)
T 2zan_A 270 DGILVLGATNIP-WVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS 316 (444)
T ss_dssp SSCEEEEEESCG-GGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEecCCCc-cccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc
Confidence 468899999987 46899999999 57999999999999999887654
No 32
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=3.5e-05 Score=93.17 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=38.9
Q ss_pred ceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
++.++||+|.|. .|+|.|+| ||.. ++++.|+.+.-..|+..++..+
T Consensus 320 ~ViVIaaTNrp~-~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (434)
T 4b4t_M 320 RVKVLAATNRVD-VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM 368 (434)
T ss_dssp SSEEEEECSSCC-CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS
T ss_pred CEEEEEeCCCch-hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC
Confidence 577899999874 48999998 8975 9999999999999998876654
No 33
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.71 E-value=0.00013 Score=86.27 Aligned_cols=82 Identities=12% Similarity=0.212 Sum_probs=58.6
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCC-ccccCCceeeeecceEEEEeecCCCCCCChhhhccceE-eecCCCChH
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKH-LYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI-ISIDSFNEA 966 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~-~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~-~~~~~~~~~ 966 (1513)
+|+||++.-.. ...+.|.++++.|. .+.+.......-.++.+++|+||....+++.|++||.+ +.+++|+..
T Consensus 148 l~iDEi~~l~~------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~ 221 (350)
T 1g8p_A 148 LYIDECNLLED------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDV 221 (350)
T ss_dssp EEETTGGGSCH------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSH
T ss_pred EEEeChhhCCH------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcH
Confidence 45699985443 26778888888764 34444434444458999999998766899999999987 999999544
Q ss_pred -HHHHHHHHHh
Q psy4730 967 -TLSKIFTSVL 976 (1513)
Q Consensus 967 -~l~~i~~~~l 976 (1513)
....|....+
T Consensus 222 ~~~~~il~~~~ 232 (350)
T 1g8p_A 222 ETRVEVIRRRD 232 (350)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 5547776654
No 34
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.70 E-value=4.8e-05 Score=89.37 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=33.6
Q ss_pred EEEEeecCCC--CCCChhhhccc---eEeecCCCChHHHHHHHHHHhhh
Q psy4730 935 IYITAMIPTM--NTITGRLLRHM---NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 935 ~~~~a~~~~~--~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++++.+++. ..+++++.+|| .++.+++ +.++...|+...+..
T Consensus 134 iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~ 181 (324)
T 1l8q_A 134 IILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE 181 (324)
T ss_dssp EEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH
T ss_pred EEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHh
Confidence 4455555553 47999999999 7899999 999999988887653
No 35
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=5.2e-05 Score=91.54 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=37.5
Q ss_pred ceEEEEeecCCCCCCChhhhc--cceE-eecC-CCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMNI-ISID-SFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~-~~~~~~l~~i~~~~l~~~ 979 (1513)
++.+|||+|.|. .|+|.|+| ||.. ++++ .|+.+.-..|+..++..+
T Consensus 311 ~v~vI~aTN~~~-~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~ 360 (428)
T 4b4t_K 311 NVKVIMATNRAD-TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM 360 (428)
T ss_dssp SEEEEEEESCSS-SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS
T ss_pred CEEEEEecCChh-hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 578899999875 49999999 8874 8885 799999999998876543
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.69 E-value=0.00045 Score=80.75 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=52.6
Q ss_pred hccCCCCCccCCCCChHHHHHHHHhcCCccccC-----C-ceeeeecceEEEEeecCCCCCCChhhhccc-eEeecCCCC
Q psy4730 892 DDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQ-----T-VTRVDLVDIIYITAMIPTMNTITGRLLRHM-NIISIDSFN 964 (1513)
Q Consensus 892 dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~-----~-~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~ 964 (1513)
||+..... ...+.|..+++.+.+.-.. . .......++.+++|++.+. .+.+.+++|| .++.+++|+
T Consensus 97 DEi~~l~~------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~-~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 97 DEIHRLSR------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG-LITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTTTSCCH------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS-SCSCSTTTTCSCEEECCCCC
T ss_pred ECCccccc------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc-cCCHHHHhcccEEEecCCCC
Confidence 88773321 2456666677765433111 0 1111224788999999873 5778899999 589999999
Q ss_pred hHHHHHHHHHHhh
Q psy4730 965 EATLSKIFTSVLD 977 (1513)
Q Consensus 965 ~~~l~~i~~~~l~ 977 (1513)
.+++..++..++.
T Consensus 170 ~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 170 PEELAQGVMRDAR 182 (324)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887654
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.69 E-value=9.6e-05 Score=87.20 Aligned_cols=120 Identities=17% Similarity=0.214 Sum_probs=82.3
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
.+|+|+||||||||++.+.+++.++ ..+..+|...++ ..|-+..++++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~--------------~~~~~~~~~~~~---------------~~~~~~~~~~~~-- 104 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS--------------ANIKTTAAPMIE---------------KSGDLAAILTNL-- 104 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT--------------CCEEEEEGGGCC---------------SHHHHHHHHHTC--
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC--------------CCeEEecchhcc---------------chhHHHHHHHhc--
Confidence 5899999999999999999977653 234445544332 123344444432
Q ss_pred cCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCC----C--eeecCCCCeEEEeecCCCCCCcchhhcc-EEEE
Q psy4730 1432 STTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLING----E--IIKMSNTMNLIFECENLEFASPATVSRV-GMIY 1502 (1513)
Q Consensus 1432 ~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nG----e--~i~~~~~~~~iFE~~~l~~asPatvsRc-g~v~ 1502 (1513)
.....+++| +.+++.+.+.|.++|++.+...+..+ . ++..| ++.++.-|.......|+..+|| -.+.
T Consensus 105 ---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~~l~~~L~~R~~~~i~ 180 (338)
T 3pfi_A 105 ---SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAGMLSNPLRDRFGMQFR 180 (338)
T ss_dssp ---CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGGGSCHHHHTTCSEEEE
T ss_pred ---cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCccccCHHHHhhcCEEee
Confidence 345789999 56788999999999988764433221 2 23344 7899999999889999999999 5566
Q ss_pred eeCC
Q psy4730 1503 FELK 1506 (1513)
Q Consensus 1503 ~~~~ 1506 (1513)
+.+-
T Consensus 181 l~~~ 184 (338)
T 3pfi_A 181 LEFY 184 (338)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6553
No 38
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=6e-05 Score=90.05 Aligned_cols=47 Identities=21% Similarity=0.147 Sum_probs=39.4
Q ss_pred cceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
.++.+|||+|.|. .|+|.|+| ||-. ++++.|+.+.-..|+..++..+
T Consensus 320 ~~ViVIaATNrpd-~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~ 369 (437)
T 4b4t_I 320 GDVKVIMATNKIE-TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM 369 (437)
T ss_dssp SSEEEEEEESCST-TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred CCEEEEEeCCChh-hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC
Confidence 3678899999875 59999999 8875 9999999999999998876543
No 39
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.66 E-value=7.4e-05 Score=83.05 Aligned_cols=42 Identities=7% Similarity=0.046 Sum_probs=32.9
Q ss_pred EEEeecC-C--CCCCChhhhccc---eEeecCCCChHHHHHHHHHHhh
Q psy4730 936 YITAMIP-T--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 936 ~~~a~~~-~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
++.+++. + ...+.+++.+|| ..+.+++|+.+++..++...+.
T Consensus 141 ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 141 LIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp EEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 4444443 3 335669999999 8999999999999999988765
No 40
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.0003 Score=81.69 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=38.4
Q ss_pred ceEEEEeecCC---CCCCChhhhccc--eEeecCCCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPT---MNTITGRLLRHM--NIISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~---~~~~~~r~~~~f--~~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
.+.+|+..|.. ...+++|+.+|| .++.+++++.+++..|...-+...
T Consensus 163 ~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 163 KLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp CEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 46777777765 335788999998 579999999999999999988763
No 41
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.64 E-value=0.00032 Score=79.30 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=38.1
Q ss_pred ceEEEEeecCCCCCCChhhhc--cc-eEeecCCCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HM-NIISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f-~~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
++.+++++|++. .+++.++| || ..++++.|+.++...|+..++...
T Consensus 145 ~~~vi~~tn~~~-~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~ 193 (262)
T 2qz4_A 145 HVIVLASTNRAD-ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL 193 (262)
T ss_dssp CEEEEEEESCGG-GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT
T ss_pred CEEEEecCCChh-hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC
Confidence 678889988763 57889998 99 579999999999999998877653
No 42
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.64 E-value=6.4e-05 Score=92.93 Aligned_cols=142 Identities=11% Similarity=0.203 Sum_probs=88.0
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHH
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILA 1423 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~ 1423 (1513)
+..++..+.+|+|+||||+|||++.+.++..+.. ...+..++....+..+++|.++... .-..|.+.
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~------------~~~f~~~~~~~~t~~dL~G~~~~~~-~~~~g~~~ 100 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN------------ARAFEYLMTRFSTPEEVFGPLSIQA-LKDEGRYE 100 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSS------------CCEEEEECCTTCCHHHHHCCBC-----------C
T ss_pred HHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhh------------hhHHHHHHHhcCCHHHhcCcccHHH-HhhchhHH
Confidence 3445567889999999999999999999876531 1223445555557899999764211 00112111
Q ss_pred HHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCC---CCcchhhcc
Q psy4730 1424 KTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEF---ASPATVSRV 1498 (1513)
Q Consensus 1424 ~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~---asPatvsRc 1498 (1513)
. .....-....++++| +..++.....|-.+|++. .++. .|.....|..+ +++.|..+.. ..+|...|+
T Consensus 101 ~----~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~-~v~i-~G~~~~~~~~~-iI~ATN~lpe~~~~~~aLldRF 173 (500)
T 3nbx_X 101 R----LTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINER-QFRN-GAHVEKIPMRL-LVAASNELPEADSSLEALYDRM 173 (500)
T ss_dssp B----CCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSS-EEEC-SSSEEECCCCE-EEEEESSCCCTTCTTHHHHTTC
T ss_pred h----hhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHH-hccC-CCCcCCcchhh-hhhccccCCCccccHHHHHHHH
Confidence 0 000000124689999 556788888888888765 4444 67777777664 5777765533 345899998
Q ss_pred EE-EEeeC
Q psy4730 1499 GM-IYFEL 1505 (1513)
Q Consensus 1499 g~-v~~~~ 1505 (1513)
.+ |++++
T Consensus 174 ~~~i~v~~ 181 (500)
T 3nbx_X 174 LIRLWLDK 181 (500)
T ss_dssp CEEEECCS
T ss_pred HHHHHHHH
Confidence 65 55554
No 43
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.64 E-value=0.00026 Score=82.98 Aligned_cols=46 Identities=9% Similarity=0.072 Sum_probs=38.4
Q ss_pred cceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.+|+++|++. .+++++.+||.++.+++|+.+++..|+..++..
T Consensus 135 ~~~~iI~~~n~~~-~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 180 (324)
T 3u61_B 135 SNCSIIITANNID-GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRR 180 (324)
T ss_dssp GGCEEEEEESSGG-GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCcc-ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 3578888888865 588999999999999999999988887776544
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.64 E-value=0.00014 Score=89.06 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=38.3
Q ss_pred eEEEEeecCC-CCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 934 IIYITAMIPT-MNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 934 ~~~~~a~~~~-~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
+.+|+|+... ...+.+.+++|+.++.+.+|+.+++..+....+..
T Consensus 135 v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 135 ITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp CEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred eEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHH
Confidence 5677776543 66899999999999999999999999999988764
No 45
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.64 E-value=0.0002 Score=83.84 Aligned_cols=121 Identities=19% Similarity=0.229 Sum_probs=82.5
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
.++|+|+||||+|||++.+.+++.++ ..+..++...++ ..+++|. ++.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~--------------~~~~~~~~~~~~~~~~l~~~----------------l~~- 86 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG--------------VNLRVTSGPAIEKPGDLAAI----------------LAN- 86 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT--------------CCEEEECTTTCCSHHHHHHH----------------HTT-
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEeccccCChHHHHHH----------------HHH-
Confidence 46899999999999999999988764 234455655443 2333332 222
Q ss_pred hccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecC-CC---eee-cCCCCeEEEeecCCCCCCcchhhccE-EE
Q psy4730 1430 AVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLIN-GE---IIK-MSNTMNLIFECENLEFASPATVSRVG-MI 1501 (1513)
Q Consensus 1430 ~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~n-Ge---~i~-~~~~~~~iFE~~~l~~asPatvsRcg-~v 1501 (1513)
.......+++| +.+++...+.|..+|++...-.+.. +. .+. .++++.++..+.......|+..+||+ .+
T Consensus 87 ---~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i 163 (324)
T 1hqc_A 87 ---SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVE 163 (324)
T ss_dssp ---TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEE
T ss_pred ---hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEE
Confidence 12345799999 5677878888888888765433322 21 122 23578999999888889999999995 67
Q ss_pred EeeC
Q psy4730 1502 YFEL 1505 (1513)
Q Consensus 1502 ~~~~ 1505 (1513)
.+.+
T Consensus 164 ~l~~ 167 (324)
T 1hqc_A 164 HLEY 167 (324)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 7765
No 46
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00015 Score=87.41 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=38.9
Q ss_pred ceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
++.+|||+|.|. .|+|.|+| ||-. ++++.|+.+....|+..++..+
T Consensus 348 ~ViVIaATNrpd-~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~ 396 (467)
T 4b4t_H 348 NIKVMFATNRPN-TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM 396 (467)
T ss_dssp TEEEEEECSCTT-SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred cEEEEeCCCCcc-cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC
Confidence 678899999865 59999999 8965 9999999999999998876543
No 47
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.57 E-value=0.00011 Score=85.23 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=37.7
Q ss_pred cceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.+++|+|.+. .+++.++| ||. .++++.|+.+....|+..++..
T Consensus 153 ~~v~vi~atn~~~-~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~ 201 (301)
T 3cf0_A 153 KNVFIIGATNRPD-IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 201 (301)
T ss_dssp SSEEEEEEESCGG-GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCcc-ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc
Confidence 3688999998873 48899998 884 6999999999999988776643
No 48
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.55 E-value=0.00034 Score=83.67 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=39.1
Q ss_pred cceEEEEeecCC--CCCCChhhhccc--eEeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPT--MNTITGRLLRHM--NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~--~~~~~~r~~~~f--~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.+|++++.+ ...+.+++.+|| ..+.+++|+.+++..|+...+..
T Consensus 166 ~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 216 (387)
T 2v1u_A 166 VWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEE 216 (387)
T ss_dssp --CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHh
Confidence 367888888875 467899999999 78999999999999999988764
No 49
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.54 E-value=0.00015 Score=86.89 Aligned_cols=58 Identities=14% Similarity=0.264 Sum_probs=44.5
Q ss_pred cceEEEEeecCC--CCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhhhhh-ccchhHHH
Q psy4730 932 VDIIYITAMIPT--MNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDWHFS-KGFADSIV 989 (1513)
Q Consensus 932 ~~~~~~~a~~~~--~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~~~~-~~f~~~~~ 989 (1513)
.++.++++++.+ ...+.+++.+|| ..+.+++|+.+++..|+...+...+. ..++++..
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~ 224 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEIL 224 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHH
T ss_pred cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHH
Confidence 578888888875 467999999998 57999999999999999998764332 23544433
No 50
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.54 E-value=4e-05 Score=88.72 Aligned_cols=69 Identities=13% Similarity=0.112 Sum_probs=40.9
Q ss_pred hHHHHHHHHhcCCccccCCc-eeeeecceEEEEeecCCCCCCChhhhc--cceEeecCCCChHHHHHHHHHHhh
Q psy4730 907 AVELLRQIIDHKHLYDFQTV-TRVDLVDIIYITAMIPTMNTITGRLLR--HMNIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 907 ~le~lr~~~~~~~~yd~~~~-~~~~~~~~~~~~a~~~~~~~~~~r~~~--~f~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
+...|-+++|...+...... ......++.+|+|+|.+ ..+++.++| ||..+.. .|+.++...|+..++.
T Consensus 128 v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~-~~ld~al~R~~R~d~~i~-~P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 128 VNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF-STLYAPLIRDGRMEKFYW-APTREDRIGVCTGIFR 199 (293)
T ss_dssp HHHHHHHHHHCCC-----------CCCCCCEEEECSSC-CC--CHHHHHHHEEEEEE-CCCHHHHHHHHHHHHG
T ss_pred HHHHHHHHhccccccccccccccccCCCcEEEEecCCc-ccCCHHHhCCCCCceeEe-CcCHHHHHHHHHHhcc
Confidence 44666677764433222211 12234578899999976 358889987 7765332 5799999999987664
No 51
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.53 E-value=0.0004 Score=86.87 Aligned_cols=68 Identities=12% Similarity=0.029 Sum_probs=45.8
Q ss_pred hccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHH
Q psy4730 892 DDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSK 970 (1513)
Q Consensus 892 dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~ 970 (1513)
||+. ++.. .+..++.|.++++.+ +..++++++.+....-+++.|+...+.+++|+.+++..
T Consensus 155 DEid~l~~~----~~~~l~~L~~~l~~~--------------~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~ 216 (516)
T 1sxj_A 155 DEVDGMSGG----DRGGVGQLAQFCRKT--------------STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKS 216 (516)
T ss_dssp CSGGGCCTT----STTHHHHHHHHHHHC--------------SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHH
T ss_pred ECCCccchh----hHHHHHHHHHHHHhc--------------CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHH
Confidence 7775 4332 355677777777642 23355566655433334578888899999999999999
Q ss_pred HHHHHhh
Q psy4730 971 IFTSVLD 977 (1513)
Q Consensus 971 i~~~~l~ 977 (1513)
++..++.
T Consensus 217 ~L~~i~~ 223 (516)
T 1sxj_A 217 RLMTIAI 223 (516)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887754
No 52
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.52 E-value=0.00027 Score=77.05 Aligned_cols=117 Identities=19% Similarity=0.231 Sum_probs=75.3
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhcc
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 1432 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~ 1432 (1513)
+++|+||+|+|||++.+.+++.+..-.. ...+..+++.... | ...+...++.....
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~---------~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENW---------RDNFIEMNASDER-----G----------IDVVRHKIKEFART 95 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGG---------GGGEEEEETTCTT-----C----------HHHHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccc---------ccceEEecccccc-----C----------hHHHHHHHHHHhcc
Confidence 5999999999999999999987643111 1233444443211 0 01122223332221
Q ss_pred ---CCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730 1433 ---TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1433 ---~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
.......|++|. .+++...+.|..++++. ++++.+++-+.......|+..+||..+.+.+-
T Consensus 96 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~ 161 (226)
T 2chg_A 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPV 161 (226)
T ss_dssp CCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred cCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChhhcCHHHHHhCceeecCCC
Confidence 124568999994 45666677787777652 45677888777777788999999998888653
No 53
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.50 E-value=0.00014 Score=82.78 Aligned_cols=137 Identities=12% Similarity=0.142 Sum_probs=88.8
Q ss_pred HHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC---CCCC
Q psy4730 1345 YEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA---SHEW 1417 (1513)
Q Consensus 1345 ~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~---t~eW 1417 (1513)
..+.....+|+|+||||+|||++.+.++.....- ...+..+|+..++ ..+|||..... ....
T Consensus 23 ~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~ 91 (265)
T 2bjv_A 23 SHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-----------QGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR 91 (265)
T ss_dssp HHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-----------TSCEEEEEGGGSCHHHHHHHHHCCC---------C
T ss_pred HHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-----------CCCeEEEecCCCChhHHHHHhcCCccccccccccc
Confidence 3344567899999999999999999998765421 1345678877776 35677753210 0113
Q ss_pred ccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC-------C
Q psy4730 1418 RDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL-------E 1488 (1513)
Q Consensus 1418 ~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l-------~ 1488 (1513)
..|.+..+ ....+++| +.+++...+.|..+|++... -+.|.....+.++++|+-+..- .
T Consensus 92 ~~~~l~~a----------~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~~iI~atn~~~~~~~~~~ 159 (265)
T 2bjv_A 92 HPGRFERA----------DGGTLFLDELATAPMMVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATNADLPAMVNEG 159 (265)
T ss_dssp CCCHHHHT----------TTSEEEEESGGGSCHHHHHHHHHHHHHCEE--CCCCC--CEECCCEEEEEESSCHHHHHHHT
T ss_pred ccchhhhc----------CCcEEEEechHhcCHHHHHHHHHHHHhCCe--ecCCCcccccCCeEEEEecCcCHHHHHHcC
Confidence 44554321 13689999 56778888888888886642 2345555667789999977642 2
Q ss_pred CCCcchhhccEEEEee
Q psy4730 1489 FASPATVSRVGMIYFE 1504 (1513)
Q Consensus 1489 ~asPatvsRcg~v~~~ 1504 (1513)
...|+..+|+..+.+.
T Consensus 160 ~~~~~L~~Rl~~~~i~ 175 (265)
T 2bjv_A 160 TFRADLLDALAFDVVQ 175 (265)
T ss_dssp SSCHHHHHHHCSEEEE
T ss_pred CccHHHHHhhcCcEEe
Confidence 4578999999654443
No 54
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.47 E-value=0.00055 Score=81.44 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=38.9
Q ss_pred cceEEEEeecCCCCCCChhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLRHMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.+|+|+|++. .+++.++|||. .++++.|+.+....|+..++..
T Consensus 220 ~~v~vI~atn~~~-~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 266 (357)
T 3d8b_A 220 DRILVVGATNRPQ-EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK 266 (357)
T ss_dssp CCEEEEEEESCGG-GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred CCEEEEEecCChh-hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh
Confidence 3688999998863 58899999997 6899999999999999887654
No 55
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.46 E-value=0.00021 Score=88.34 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=48.0
Q ss_pred HhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCChhhhccceE-eecCCCCh-
Q psy4730 890 ILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHMNI-ISIDSFNE- 965 (1513)
Q Consensus 890 ~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f~~-~~~~~~~~- 965 (1513)
|+||+|... ......|...++.+.+...+. . .....-.+++|+||. .....+.+++||.. +.+++|+.
T Consensus 114 ~IDEI~r~~------~~~q~~LL~~lee~~v~i~G~-~-~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ 185 (500)
T 3nbx_X 114 FLDEIWKAG------PAILNTLLTAINERQFRNGAH-V-EKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDK 185 (500)
T ss_dssp EEESGGGCC------HHHHHHHHHHHHSSEEECSSS-E-EECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCH
T ss_pred eHHhHhhhc------HHHHHHHHHHHHHHhccCCCC-c-CCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhh
Confidence 359997433 235677777777665543222 1 222222357788863 23455799999976 88999998
Q ss_pred HHHHHHHHH
Q psy4730 966 ATLSKIFTS 974 (1513)
Q Consensus 966 ~~l~~i~~~ 974 (1513)
++...|...
T Consensus 186 ee~~~IL~~ 194 (500)
T 3nbx_X 186 ANFRSMLTS 194 (500)
T ss_dssp HHHHHHHTC
T ss_pred hhHHHHHhc
Confidence 566677654
No 56
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.44 E-value=0.00075 Score=80.45 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=50.3
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeee-cceEEEEeecC-CCCCCChhhhccceEeecCCCChH
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDL-VDIIYITAMIP-TMNTITGRLLRHMNIISIDSFNEA 966 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~-~~~~~~~a~~~-~~~~~~~r~~~~f~~~~~~~~~~~ 966 (1513)
+|+||++.-.. ...+.|+.+++.... ..-.+.- ..+.+++++.. +...+++.+++||..+.+++|+.+
T Consensus 193 l~IDEi~~l~~------~~~~~L~~~le~~~~----~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~ 262 (368)
T 3uk6_A 193 LFIDEVHMLDI------ESFSFLNRALESDMA----PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEK 262 (368)
T ss_dssp EEEESGGGSBH------HHHHHHHHHTTCTTC----CEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHH
T ss_pred EEEhhccccCh------HHHHHHHHHhhCcCC----CeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHH
Confidence 56799984432 256666666654211 0000000 12334433322 245799999999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy4730 967 TLSKIFTSVLDW 978 (1513)
Q Consensus 967 ~l~~i~~~~l~~ 978 (1513)
++..|+...+..
T Consensus 263 e~~~il~~~~~~ 274 (368)
T 3uk6_A 263 DTKQILRIRCEE 274 (368)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 57
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.43 E-value=0.00012 Score=85.24 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=74.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
++++|+||||+|||++.+.+++.+....... ...+..+++..+. .+++|.. .+-+..+++..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~l~-~~~~g~~--------~~~~~~~~~~~-- 129 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVR-------KGHLVSVTRDDLV-GQYIGHT--------APKTKEVLKRA-- 129 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSS-------SCCEEEECGGGTC-CSSTTCH--------HHHHHHHHHHH--
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcC-------CCcEEEEcHHHhh-hhccccc--------HHHHHHHHHhc--
Confidence 3799999999999999999999887532111 1234556654332 2333321 11223444443
Q ss_pred cCCCCceEEEEcC-----------CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC-----CCCCCcchh
Q psy4730 1432 STTPDRKWIMFDG-----------PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-----LEFASPATV 1495 (1513)
Q Consensus 1432 ~~~~~~~WivfDG-----------~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~-----l~~asPatv 1495 (1513)
....+++|. +.++..++.|..+|++. +.++.+|+-+.. +....|+..
T Consensus 130 ----~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-------------~~~~~~i~~~~~~~~~~~~~~~~~l~ 192 (309)
T 3syl_A 130 ----MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-------------RDDLVVILAGYADRMENFFQSNPGFR 192 (309)
T ss_dssp ----TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-------------TTTCEEEEEECHHHHHHHHHHSTTHH
T ss_pred ----CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-------------CCCEEEEEeCChHHHHHHHhhCHHHH
Confidence 236889993 23677778888888764 256666666532 112349999
Q ss_pred hcc-EEEEeeCC
Q psy4730 1496 SRV-GMIYFELK 1506 (1513)
Q Consensus 1496 sRc-g~v~~~~~ 1506 (1513)
+|| -.|+|.+-
T Consensus 193 ~R~~~~i~~~~~ 204 (309)
T 3syl_A 193 SRIAHHIEFPDY 204 (309)
T ss_dssp HHEEEEEEECCC
T ss_pred HhCCeEEEcCCc
Confidence 999 66677653
No 58
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.43 E-value=0.00037 Score=87.56 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=76.4
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCC-ChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~-t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
...++|+|||||||||+.+.++..++. ....++...+ +..+++|.... .-....|-+..+++.+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~--------------~~~~i~~~~~~~~~~~~g~~~~-~ig~~~~~~~~~~~~a 172 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGR--------------KFVRISLGGVRDESEIRGHRRT-YVGAMPGRIIQGMKKA 172 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTC--------------EEEEECCCC---------------------CHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC--------------CeEEEEecccchhhhhhhHHHH-HhccCchHHHHHHHHh
Confidence 347999999999999999999988742 3455555543 35566664321 1112233333444433
Q ss_pred hccCCCCceEEEEcC--CCChH----HHHhhhcccCCCCce-eecCCCeeecC-CCCeEEEeecCCCCCCcchhhccEEE
Q psy4730 1430 AVSTTPDRKWIMFDG--PIDAV----WIENMNTVLDDNKKL-CLINGEIIKMS-NTMNLIFECENLEFASPATVSRVGMI 1501 (1513)
Q Consensus 1430 ~~~~~~~~~WivfDG--~~d~~----wiE~LNsvLDdn~~L-~L~nGe~i~~~-~~~~~iFE~~~l~~asPatvsRcg~v 1501 (1513)
. ...--+++|. -+.+. -.+.|-.+||+...- ....+....++ +++.+|.-+..+....||..+||-+|
T Consensus 173 ~----~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi 248 (543)
T 3m6a_A 173 G----KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEII 248 (543)
T ss_dssp C----SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEE
T ss_pred h----ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhccee
Confidence 1 1223777883 23333 346777888864322 22333333333 67888888888899999999999998
Q ss_pred EeeCC
Q psy4730 1502 YFELK 1506 (1513)
Q Consensus 1502 ~~~~~ 1506 (1513)
++++-
T Consensus 249 ~~~~~ 253 (543)
T 3m6a_A 249 NIAGY 253 (543)
T ss_dssp ECCCC
T ss_pred eeCCC
Confidence 88763
No 59
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.42 E-value=0.00017 Score=96.01 Aligned_cols=83 Identities=17% Similarity=0.323 Sum_probs=63.1
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC-------------------------
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------------------------- 943 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------------------------- 943 (1513)
+|+||+..... .+...|.++++.|.+-|.. ...+...++.+|+|+|.+
T Consensus 664 l~lDEi~~l~~------~~~~~Ll~~l~~~~~~~~~-g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~ 736 (854)
T 1qvr_A 664 ILFDEIEKAHP------DVFNILLQILDDGRLTDSH-GRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVL 736 (854)
T ss_dssp EEESSGGGSCH------HHHHHHHHHHTTTEECCSS-SCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred EEEecccccCH------HHHHHHHHHhccCceECCC-CCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHH
Confidence 45688874432 4788999999988876544 334556788899999973
Q ss_pred CCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730 944 MNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 944 ~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
+..+.|.|++|+ .++...+|+.+++..|...++..
T Consensus 737 ~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~ 772 (854)
T 1qvr_A 737 QQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSY 772 (854)
T ss_dssp HTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence 345789999999 56778889999999999987764
No 60
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.40 E-value=0.0003 Score=84.75 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=39.1
Q ss_pred cceEEEEeecCCCCCCChhhhccce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLRHMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.+|+|+|++. .+++.++|||. .++++.|+.+....|+..++..
T Consensus 251 ~~v~vI~atn~~~-~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 251 DRVLVMGATNRPQ-ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK 297 (389)
T ss_dssp -CEEEEEEESCGG-GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCch-hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh
Confidence 3688999998864 68999999995 7999999999999999887654
No 61
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.37 E-value=0.00014 Score=86.67 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=39.4
Q ss_pred cceEEEEeecCCCCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.+++|+|.+. .+++.++||| ..++++.|+.+....|+..++..
T Consensus 186 ~~v~vI~atn~~~-~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 232 (355)
T 2qp9_X 186 QGVLVLGATNIPW-QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 232 (355)
T ss_dssp CCEEEEEEESCGG-GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCeEEEeecCCcc-cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh
Confidence 3688999999874 6899999999 67999999999999999887654
No 62
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.36 E-value=0.0012 Score=79.05 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=51.7
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC--CCCCChhhhccce--EeecCCCC
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHMN--IISIDSFN 964 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f~--~~~~~~~~ 964 (1513)
+++||+..- .+..++.|..+++.. .. ....++.++++++.+ ...+.+++.+||. .+.+++++
T Consensus 129 lilDE~~~l------~~~~~~~L~~~~~~~---~~-----~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~ 194 (389)
T 1fnn_A 129 LVLDDAFNL------APDILSTFIRLGQEA---DK-----LGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYT 194 (389)
T ss_dssp EEEETGGGS------CHHHHHHHHHHTTCH---HH-----HSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCB
T ss_pred EEEECcccc------chHHHHHHHHHHHhC---CC-----CCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCC
Confidence 456888643 234566665555421 00 000267788888776 3458999999998 69999999
Q ss_pred hHHHHHHHHHHhhh
Q psy4730 965 EATLSKIFTSVLDW 978 (1513)
Q Consensus 965 ~~~l~~i~~~~l~~ 978 (1513)
.+++..++...+..
T Consensus 195 ~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 195 KDQIFDILLDRAKA 208 (389)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887764
No 63
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.35 E-value=0.00046 Score=76.24 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=76.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhc-ccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKS-ATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~-~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
+.++|+||+|+||||+++.+++.+..-..... ....+ ..+..+... ...++++. ++....+ ...+..+++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~-~~~~~~~-~~~~~~~~~~~~ 119 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC--DNCREIEQG--RFVDLIEI-DAASRTK-VEDTRDLLDNVQ 119 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS--HHHHHHHTT--CCSSEEEE-ETTCGGG-HHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc--HHHHHHhcc--CCcceEEe-cCccccc-HHHHHHHHHHhh
Confidence 58999999999999999999887753110000 00000 000000000 00112221 1111111 112233444332
Q ss_pred cc-CCCCceEEEEcCC--CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730 1431 VS-TTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1431 ~~-~~~~~~WivfDG~--~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
.. ....+..||+|.. +++...+.|-..+++. ++++.+|+-+.+.....|+..+||-.+.+.+
T Consensus 120 ~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~ 184 (250)
T 1njg_A 120 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQKLPVTILSRCLQFHLKA 184 (250)
T ss_dssp CSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred hchhcCCceEEEEECcccccHHHHHHHHHHHhcC-------------CCceEEEEEeCChHhCCHHHHHHhhhccCCC
Confidence 22 1335689999964 6777777777777542 5677888888887788899999998888876
No 64
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.33 E-value=0.00038 Score=79.18 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=36.2
Q ss_pred ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
++.+++|+|.+. .+++.++| ||. .++++.|+.++...|+..++.
T Consensus 151 ~v~vi~ttn~~~-~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 151 PVIVLAATNRPE-ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CCEEEECBSCCT-TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CEEEEEecCCch-hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 578889998873 48889988 884 589999999999999887654
No 65
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.33 E-value=0.002 Score=70.99 Aligned_cols=45 Identities=7% Similarity=0.192 Sum_probs=36.4
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.++++++.+ ..+.+.+.+|+..+.+++|+.+++..++...+..
T Consensus 156 ~~~~i~~t~~~-~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 156 HVKFLLATTDP-QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp TEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCh-HhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 56677777654 3578889999999999999999999999887653
No 66
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.33 E-value=0.00029 Score=81.70 Aligned_cols=133 Identities=12% Similarity=0.164 Sum_probs=76.7
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
..++++|+||||+|||++.+.+++.++ ..+..+++..+....+.|. . ..+.+..++...
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~--------------~~~~~i~~~~~~~~~~~~~---~----~~~~~~~~~~~~ 107 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN--------------APFIKVEATKFTEVGYVGK---E----VDSIIRDLTDSA 107 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT--------------CCEEEEEGGGGSSCCSGGG---S----TTHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEcchhcccCCccCc---c----HHHHHHHHHHHh
Confidence 356899999999999999999998874 2345566555443223331 1 112333332211
Q ss_pred h--ccCCCCceEEEEcCC--CCh------------HHHHhhhcccCCCCceeecCCCeeecCCCCeEEEe----ecCCCC
Q psy4730 1430 A--VSTTPDRKWIMFDGP--IDA------------VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE----CENLEF 1489 (1513)
Q Consensus 1430 ~--~~~~~~~~WivfDG~--~d~------------~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE----~~~l~~ 1489 (1513)
. .........+++|.. +.+ .+...|..+||+. .+...+| ...++++.++.- +.+...
T Consensus 108 ~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~-~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~ 184 (310)
T 1ofh_A 108 GGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS-TVSTKHG--MVKTDHILFIASGAFQVARPSD 184 (310)
T ss_dssp TTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCC-EEEETTE--EEECTTCEEEEEECCSSSCGGG
T ss_pred hHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCC-eEecccc--cccCCcEEEEEcCCcccCCccc
Confidence 0 000011368999931 111 1245566677754 3334445 234556777766 345667
Q ss_pred CCcchhhccEE-EEeeCC
Q psy4730 1490 ASPATVSRVGM-IYFELK 1506 (1513)
Q Consensus 1490 asPatvsRcg~-v~~~~~ 1506 (1513)
..|+..+||.+ |+|++-
T Consensus 185 l~~~l~~R~~~~i~~~~~ 202 (310)
T 1ofh_A 185 LIPELQGRLPIRVELTAL 202 (310)
T ss_dssp SCHHHHHTCCEEEECCCC
T ss_pred CCHHHHhhCCceEEcCCc
Confidence 88999999975 777653
No 67
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.31 E-value=0.00031 Score=81.22 Aligned_cols=130 Identities=11% Similarity=0.100 Sum_probs=73.7
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
..|++|+||||||||++.+.+|+.++ ..+..+++ .++.+.+- +-..+.+..+++.+.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~--------------~~~i~v~~-----~~l~~~~~----g~~~~~i~~~f~~a~ 92 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG--------------INPIMMSA-----GELESGNA----GEPAKLIRQRYREAA 92 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT--------------CCCEEEEH-----HHHHCC-------HHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEeH-----HHhhhccC----chhHHHHHHHHHHHH
Confidence 35899999999999999999998884 23444443 33333221 112233444444442
Q ss_pred cc-CCCCceEEEEcCC--------CCh-------HHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcch
Q psy4730 1431 VS-TTPDRKWIMFDGP--------IDA-------VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPAT 1494 (1513)
Q Consensus 1431 ~~-~~~~~~WivfDG~--------~d~-------~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPat 1494 (1513)
.. .......|++|.- -++ .+...|..+||+-....+.......-.+++.+|.-|.+.....||.
T Consensus 93 ~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al 172 (293)
T 3t15_A 93 EIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPL 172 (293)
T ss_dssp HHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHH
T ss_pred HHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHH
Confidence 10 1334577888842 011 3568888888866555555544455567889999998888898998
Q ss_pred h--hccEEEEe
Q psy4730 1495 V--SRVGMIYF 1503 (1513)
Q Consensus 1495 v--sRcg~v~~ 1503 (1513)
. +|+-.++.
T Consensus 173 ~R~~R~d~~i~ 183 (293)
T 3t15_A 173 IRDGRMEKFYW 183 (293)
T ss_dssp HHHHHEEEEEE
T ss_pred hCCCCCceeEe
Confidence 8 47776443
No 68
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.28 E-value=0.00054 Score=79.99 Aligned_cols=44 Identities=9% Similarity=0.227 Sum_probs=36.1
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
++.++++++.+ ..+.+.+.+|+..+.+++|+.+++..++..++.
T Consensus 140 ~~~~i~~~~~~-~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 140 NVRFILSCNYS-SKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp TEEEEEEESCG-GGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCc-cccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH
Confidence 45677777765 357899999999999999999999998887764
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.27 E-value=0.00075 Score=78.61 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=36.9
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.++.+++++ ..+.+.+.+|+..+.+++|+.+++..++..++..
T Consensus 137 ~~~~il~~~~~-~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 137 STRFAFACNQS-NKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp TEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCh-hhchhHHHhhceEEeecCCCHHHHHHHHHHHHHH
Confidence 45677777664 4678999999999999999999999999887643
No 70
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.26 E-value=0.00059 Score=79.25 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=90.2
Q ss_pred HHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC-CC--CCcc
Q psy4730 1347 MILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA-SH--EWRD 1419 (1513)
Q Consensus 1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~-t~--eW~D 1419 (1513)
+.....+|+|+||||+|||++.+.++....+. ...+..+|+.+++ ..+|||+-... ++ .-..
T Consensus 21 ~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-----------~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~ 89 (304)
T 1ojl_A 21 VAPSDATVLIHGDSGTGKELVARALHACSARS-----------DRPLVTLNCAALNESLLESELFGHEKGAFTGADKRRE 89 (304)
T ss_dssp HCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS-----------SSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCC
T ss_pred HhCCCCcEEEECCCCchHHHHHHHHHHhCccc-----------CCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhc
Confidence 34567899999999999999999998764321 1345678888876 46888863211 11 1234
Q ss_pred CHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC-------CCC
Q psy4730 1420 GILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL-------EFA 1490 (1513)
Q Consensus 1420 G~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l-------~~a 1490 (1513)
|.|..+ ....+++| +.+++.....|-.+|++... -+-|..-..+.++++|+-+..- ...
T Consensus 90 g~~~~a----------~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~riI~atn~~l~~~v~~g~f 157 (304)
T 1ojl_A 90 GRFVEA----------DGGTLFLDEIGDISPLMQVRLLRAIQEREV--QRVGSNQTISVDVRLIAATHRDLAEEVSAGRF 157 (304)
T ss_dssp CHHHHH----------TTSEEEEESCTTCCHHHHHHHHHHHHSSBC--CBTTBCCCCBCCCEEEEEESSCHHHHHHHTSS
T ss_pred CHHHhc----------CCCEEEEeccccCCHHHHHHHHHHHhcCEe--eecCCcccccCCeEEEEecCccHHHHHHhCCc
Confidence 544322 12579999 67788888888999987654 2445566677889999988542 124
Q ss_pred CcchhhccEEEEee
Q psy4730 1491 SPATVSRVGMIYFE 1504 (1513)
Q Consensus 1491 sPatvsRcg~v~~~ 1504 (1513)
.|...+|+..+.+.
T Consensus 158 r~~L~~Rl~~~~i~ 171 (304)
T 1ojl_A 158 RQDLYYRLNVVAIE 171 (304)
T ss_dssp CHHHHHHHSSEEEE
T ss_pred HHHHHhhcCeeEEe
Confidence 57788898665543
No 71
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.26 E-value=0.00061 Score=79.78 Aligned_cols=114 Identities=17% Similarity=0.209 Sum_probs=77.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
.+.+++.||||+|||++.+.+++.++ ..+..+|+..... +.+...+.+.+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~--------------~~~~~i~~~~~~~----------------~~i~~~~~~~~ 97 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVN--------------ADMMFVNGSDCKI----------------DFVRGPLTNFA 97 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTT--------------EEEEEEETTTCCH----------------HHHHTHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhC--------------CCEEEEcccccCH----------------HHHHHHHHHHH
Confidence 46788888899999999999987764 3456666543221 11222233332
Q ss_pred cc--CCCCceEEEEcC--CCC-hHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730 1431 VS--TTPDRKWIMFDG--PID-AVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1431 ~~--~~~~~~WivfDG--~~d-~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
.. .....+-+++|. .+. ....+.|..++++ .++++++|+-+.+.....|+..|||.++.|.+
T Consensus 98 ~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~-------------~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~ 164 (324)
T 3u61_B 98 SAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA-------------YSSNCSIIITANNIDGIIKPLQSRCRVITFGQ 164 (324)
T ss_dssp HBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH-------------HGGGCEEEEEESSGGGSCTTHHHHSEEEECCC
T ss_pred hhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh-------------CCCCcEEEEEeCCccccCHHHHhhCcEEEeCC
Confidence 22 123568999994 344 5566777777653 24678899988888889999999999998866
Q ss_pred CC
Q psy4730 1506 KC 1507 (1513)
Q Consensus 1506 ~~ 1507 (1513)
-.
T Consensus 165 ~~ 166 (324)
T 3u61_B 165 PT 166 (324)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 72
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.24 E-value=0.0003 Score=86.19 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=33.1
Q ss_pred EEEeecCC--CCCCChhhhccc---eEeecCCCChHHHHHHHHHHhh
Q psy4730 936 YITAMIPT--MNTITGRLLRHM---NIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 936 ~~~a~~~~--~~~~~~r~~~~f---~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
++++.+|+ ...+.+|+++|| .++.+++|+.+++..|+...+.
T Consensus 231 Iitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 231 VICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp EEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 34454444 345999999999 5899999999999999888764
No 73
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.21 E-value=0.00029 Score=91.25 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=38.1
Q ss_pred ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDWH 979 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~~ 979 (1513)
++.++||+|.+ ..|+|.++| ||. .+.++.|+.+.-..|+..++..+
T Consensus 340 ~V~VIaaTN~~-d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~ 388 (806)
T 3cf2_A 340 HVIVMAATNRP-NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp CEEEEEECSST-TTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS
T ss_pred CEEEEEecCCh-hhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC
Confidence 57788998876 458999998 886 49999999999999998876543
No 74
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.20 E-value=0.00071 Score=78.63 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=75.5
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc-
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV- 1431 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~- 1431 (1513)
+++|.||+|+|||++.+.+++.+..-.. ...+..+|+.... | . ... ...+++...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~---------~~~~~~~~~~~~~-----~-~----~~~-----~~~~~~~~~~ 95 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENW---------RDNFIEMNASDER-----G-I----DVV-----RHKIKEFART 95 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCH---------HHHCEEEETTSTT-----C-T----TTS-----SHHHHHHHHS
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcc---------cCCeEEEeCcccc-----C-h----HHH-----HHHHHHHHhc
Confidence 4999999999999999999988742110 1223445544311 1 0 011 122233221
Q ss_pred --cCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730 1432 --STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1432 --~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
-.......+|+|. .+++.-.+.|..+++. .++++.+|+-+.+.....|+..|||..+.|.+-
T Consensus 96 ~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~ 161 (319)
T 2chq_A 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEM-------------YSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPV 161 (319)
T ss_dssp CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-------------SSSSEEEEEEESCGGGSCHHHHTTCEEEECCCC
T ss_pred CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-------------cCCCCeEEEEeCChhhcchHHHhhCeEEEecCC
Confidence 1124578999995 3455556667666654 356788899888888888999999999988764
No 75
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.19 E-value=0.00016 Score=91.72 Aligned_cols=126 Identities=14% Similarity=0.167 Sum_probs=87.2
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccC--CCCC--CccCHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDS--ASHE--WRDGILAKTFRE 1428 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~--~t~e--W~DG~l~~~lR~ 1428 (1513)
+|+|+||||+|||++.+.+++.+.+ ..+. .....+..++.|.... .+++ +..|.+..+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r--------------~~~~-~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A--- 390 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPR--------------AVYT-TGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA--- 390 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSC--------------EECC-CTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---
T ss_pred ceEEECCCchHHHHHHHHHHHhCCC--------------ceec-CCCccccccccceeeeccccccccccCCeeEec---
Confidence 8999999999999999998866532 0111 1111334444444321 1233 466776643
Q ss_pred hhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC-------------CCCcc
Q psy4730 1429 MAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-------------FASPA 1493 (1513)
Q Consensus 1429 ~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~-------------~asPa 1493 (1513)
....+++| +-+++...+.|..+|++...-....|....+|.++++|..+.... ..+||
T Consensus 391 -------~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~a 463 (595)
T 3f9v_A 391 -------DGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPT 463 (595)
T ss_dssp -------SSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSS
T ss_pred -------CCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHH
Confidence 12688889 567888889999999876544345699999999999998886654 78999
Q ss_pred hhhccEEEEe
Q psy4730 1494 TVSRVGMIYF 1503 (1513)
Q Consensus 1494 tvsRcg~v~~ 1503 (1513)
..+|+.++++
T Consensus 464 Ll~RFDl~~~ 473 (595)
T 3f9v_A 464 ILSRFDLIFI 473 (595)
T ss_dssp SGGGCSCCEE
T ss_pred HHhhCeEEEE
Confidence 9999976554
No 76
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.17 E-value=0.0015 Score=76.85 Aligned_cols=132 Identities=10% Similarity=0.057 Sum_probs=76.8
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccc---------cceeEEEecCCCCChhhccccccCCCCCCcc
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKE---------FKTGYKIINPKSITMGQLYGEFDSASHEWRD 1419 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~---------~~~~~~~inp~~~t~~eL~G~~~~~t~eW~D 1419 (1513)
..|++++.||+|+|||++.+.+++++..-.... .++..+ ...++..++|..- +.+-.-
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~------------~~~~~i 90 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG------------KNTLGV 90 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT------------CSSBCH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc------------CCCCCH
Confidence 457899999999999999999999886321110 011110 1123444555310 011110
Q ss_pred CHHHHHHHHhhccC-CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh
Q psy4730 1420 GILAKTFREMAVST-TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS 1496 (1513)
Q Consensus 1420 G~l~~~lR~~~~~~-~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs 1496 (1513)
..+-.+++.....+ ...++-+|+|. .+...-.+.|-..|++ .|+++.+|+-+.+....-|+..|
T Consensus 91 ~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe-------------p~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 91 DAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE-------------PPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp HHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS-------------CCTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC-------------CCCCeEEEEEeCChHhCcHHHhh
Confidence 11222333333222 24678999995 2233323333333332 25678999999999899999999
Q ss_pred ccEEEEeeCC
Q psy4730 1497 RVGMIYFELK 1506 (1513)
Q Consensus 1497 Rcg~v~~~~~ 1506 (1513)
||..+.|.+-
T Consensus 158 Rc~~~~~~~~ 167 (334)
T 1a5t_A 158 RCRLHYLAPP 167 (334)
T ss_dssp TSEEEECCCC
T ss_pred cceeeeCCCC
Confidence 9999998763
No 77
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.17 E-value=0.00078 Score=76.07 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=36.4
Q ss_pred cceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.+|+|+|++ ..++++++| ||. .+.++.|+.+....|+..++..
T Consensus 149 ~~~~vI~~tn~~-~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 149 EGIIVIAATNRP-DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp SCEEEEEEESCT-TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEeeCCc-hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 367889999987 468899988 775 5889999999888887776543
No 78
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.00087 Score=78.18 Aligned_cols=116 Identities=20% Similarity=0.250 Sum_probs=73.6
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhcc
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 1432 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~~ 1432 (1513)
+++|.||+|+|||++.+.+++.+..-.. ...+..+++.... | .+ .+...+++....
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~---------~~~~~~~~~~~~~-----~---------~~-~~~~~~~~~~~~ 103 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENW---------RHNFLELNASDER-----G---------IN-VIREKVKEFART 103 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGH---------HHHEEEEETTCHH-----H---------HH-TTHHHHHHHHHS
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcc---------cCceEEeeccccC-----c---------hH-HHHHHHHHHHhh
Confidence 5999999999999999999988753110 1223445543211 1 00 011122222211
Q ss_pred C---CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730 1433 T---TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1433 ~---~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
. .....-+|+|. .+++...+.|..++++. ++++++++-+.+.....|+..|||..+.|.+
T Consensus 104 ~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~ 168 (327)
T 1iqp_A 104 KPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSSKIIEPIQSRCAIFRFRP 168 (327)
T ss_dssp CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHHTEEEEECCC
T ss_pred CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCCccccCHHHHhhCcEEEecC
Confidence 1 14568999995 34555566666666542 4577888888888888899999999998876
No 79
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.16 E-value=0.00039 Score=82.94 Aligned_cols=28 Identities=11% Similarity=0.440 Sum_probs=24.9
Q ss_pred CChhhhccceEee-cCCCChHHHHHHHHH
Q psy4730 947 ITGRLLRHMNIIS-IDSFNEATLSKIFTS 974 (1513)
Q Consensus 947 ~~~r~~~~f~~~~-~~~~~~~~l~~i~~~ 974 (1513)
+.|.|++||.++. +.+|+.+.+..|...
T Consensus 239 ~~~~l~~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 239 LIPEFIGRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred CCHHHhcccCeeeecCCCCHHHHHHHHHH
Confidence 7899999999966 789999999999886
No 80
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.16 E-value=0.0011 Score=79.13 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=39.4
Q ss_pred ceEEEEc--CCCChHHHHhhhcccCCCCc--eeecCCCeeecCCCCeEEEeec--CCCCCCcchhhccEEEEeeCC
Q psy4730 1437 RKWIMFD--GPIDAVWIENMNTVLDDNKK--LCLINGEIIKMSNTMNLIFECE--NLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1437 ~~WivfD--G~~d~~wiE~LNsvLDdn~~--L~L~nGe~i~~~~~~~~iFE~~--~l~~asPatvsRcg~v~~~~~ 1506 (1513)
+.-+++| ..+++.-.+.|+.++++... +.+.. .+.++++..++ ......|+..|||..+.+.+-
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~ii~t------~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~ 259 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMAT------NRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPY 259 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCCEEEEEE------SCSEEECBTSSCEEETTCCHHHHTTEEEEEECCC
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCCeeeeec------ccceeeeeccCCCCcccCCHHHHhhccEEEecCC
Confidence 3589999 45677778888888877532 11111 11122222221 234567999999999988764
No 81
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.14 E-value=0.0014 Score=77.54 Aligned_cols=44 Identities=5% Similarity=0.000 Sum_probs=35.8
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
+..++.+++++. .+.+++.+|+..+.+.+|+.+++..+...++.
T Consensus 163 ~~~~il~~~~~~-~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 163 VTRFCLICNYVT-RIIDPLASQCSKFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp TEEEEEEESCGG-GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CceEEEEeCchh-hCcchhhccCceEEeCCCCHHHHHHHHHHHHH
Confidence 455666776653 48899999999999999999999998888764
No 82
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.11 E-value=0.0018 Score=79.79 Aligned_cols=123 Identities=19% Similarity=0.178 Sum_probs=67.3
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
...++++|+||||+|||++.+.++..+..-. . +..-....+..++.. |.+ .++|.+ -+..++..
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~---~-p~~l~~~~~~~l~~~--------~~~---~g~~e~-~~~~~~~~ 262 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNE---V-PEILRDKRVMTLDMG--------TKY---RGEFED-RLKKVMDE 262 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSC---S-CTTTSSCCEECC---------------------CT-THHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCC---C-ChhhcCCeEEEeeCC--------ccc---cchHHH-HHHHHHHH
Confidence 3456899999999999999999998875310 0 000012334444443 222 123332 23444544
Q ss_pred hhccCCCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC-----CCCcchhhccEEEEe
Q psy4730 1429 MAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-----FASPATVSRVGMIYF 1503 (1513)
Q Consensus 1429 ~~~~~~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~-----~asPatvsRcg~v~~ 1503 (1513)
... ....-+++||..|. ...|..+|+. | .+++|..|+.-. ...||..+||..|.+
T Consensus 263 ~~~---~~~~iLfiD~~~~a--~~~L~~~L~~--------g-------~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v 322 (468)
T 3pxg_A 263 IRQ---AGNIILFIDAAIDA--SNILKPSLAR--------G-------ELQCIGATTLDEYRKYIEKDAALERRFQPIQV 322 (468)
T ss_dssp HHT---CCCCEEEECC----------CCCTTS--------S-------SCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred HHh---cCCeEEEEeCchhH--HHHHHHhhcC--------C-------CEEEEecCCHHHHHHHhhcCHHHHHhCcccee
Confidence 432 23467888976654 3445555542 2 577888776665 477999999999998
Q ss_pred eCCC
Q psy4730 1504 ELKC 1507 (1513)
Q Consensus 1504 ~~~~ 1507 (1513)
++-.
T Consensus 323 ~~p~ 326 (468)
T 3pxg_A 323 DQPS 326 (468)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 83
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.10 E-value=0.0013 Score=81.44 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=38.2
Q ss_pred cceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.++||+|++. .+++.++| ||.. ++++.|+.+....|+...+..
T Consensus 339 ~~v~vIaaTn~~~-~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 339 AHVIVMAATNRPN-SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp SCEEEEEEESCGG-GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred CceEEEEecCCcc-ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc
Confidence 3789999999873 48899988 7854 999999999999999887654
No 84
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.10 E-value=0.00032 Score=80.47 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=72.1
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
...++++|+||||||||++.+.+++.++ ..+..+++ .++++.+.. -..+.+..+++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~--------------~~~~~v~~-----~~~~~~~~~----~~~~~~~~~~~~ 105 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN--------------ATFIRVVG-----SELVKKFIG----EGASLVKDIFKL 105 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT--------------CEEEEEEG-----GGGCCCSTT----HHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC--------------CCEEEEeh-----HHHHHhccc----hHHHHHHHHHHH
Confidence 3457999999999999999999987753 23444443 334333211 111222233333
Q ss_pred hhccCCCCceEEEEcCC-------------CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh
Q psy4730 1429 MAVSTTPDRKWIMFDGP-------------IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 1495 (1513)
Q Consensus 1429 ~~~~~~~~~~WivfDG~-------------~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv 1495 (1513)
+.. .....+++|.- .+..+.+.++.+|+.- +.+..++++.+|.-+.......|+..
T Consensus 106 ~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~--------~~~~~~~~~~vI~ttn~~~~l~~~l~ 174 (285)
T 3h4m_A 106 AKE---KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM--------DGFDARGDVKIIGATNRPDILDPAIL 174 (285)
T ss_dssp HHH---TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH--------HTTCSSSSEEEEEECSCGGGBCHHHH
T ss_pred HHH---cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh--------hCCCCCCCEEEEEeCCCchhcCHHHc
Confidence 221 23468999941 1344556666665321 01122346778888877888889988
Q ss_pred h--ccE-EEEeeC
Q psy4730 1496 S--RVG-MIYFEL 1505 (1513)
Q Consensus 1496 s--Rcg-~v~~~~ 1505 (1513)
+ |+. .+++++
T Consensus 175 ~~~Rf~~~i~~~~ 187 (285)
T 3h4m_A 175 RPGRFDRIIEVPA 187 (285)
T ss_dssp STTSEEEEEECCC
T ss_pred CCCcCCeEEEECC
Confidence 8 887 445544
No 85
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.09 E-value=0.0011 Score=77.26 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=72.9
Q ss_pred EEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc--
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV-- 1431 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~-- 1431 (1513)
++|+||+|+|||++.+.+++.+..-.. ...+..+|+.... | -+.+..+++....
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~---------~~~~~~~~~~~~~-----~----------~~~i~~~~~~~~~~~ 100 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSY---------ADGVLELNASDDR-----G----------IDVVRNQIKHFAQKK 100 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGH---------HHHEEEECTTSCC-----S----------HHHHHTHHHHHHHBC
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcc---------cCCEEEecCcccc-----C----------hHHHHHHHHHHHhcc
Confidence 999999999999999999988743110 1223444443210 0 0112222333221
Q ss_pred cC--CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730 1432 ST--TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1432 ~~--~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
.. ...++.||+|. .++..-.+.|-.++++ .++++.+++-+.+.....|+..|||..+.|.+-
T Consensus 101 ~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~ 166 (323)
T 1sxj_B 101 LHLPPGKHKIVILDEADSMTAGAQQALRRTMEL-------------YSNSTRFAFACNQSNKIIEPLQSQCAILRYSKL 166 (323)
T ss_dssp CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH-------------TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred ccCCCCCceEEEEECcccCCHHHHHHHHHHHhc-------------cCCCceEEEEeCChhhchhHHHhhceEEeecCC
Confidence 11 23478999995 2444445556555543 246788888888888888999999999988764
No 86
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.08 E-value=0.0014 Score=77.44 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=75.5
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh-
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA- 1430 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~- 1430 (1513)
..++|+||||+||||+.+.+++.+..-... ...+..+||......+. +.+ .+.. +....
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~--------~~~~~~~~~~~~~~~~~----------~~~-~~~~-~~~~~~ 118 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLM--------KSRILELNASDERGISI----------VRE-KVKN-FARLTV 118 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHH--------TTSEEEECSSSCCCHHH----------HTT-HHHH-HHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCccc--------ccceEEEccccccchHH----------HHH-HHHH-Hhhhcc
Confidence 349999999999999999999987631111 13445566654321100 000 0000 11100
Q ss_pred ---------ccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccE
Q psy4730 1431 ---------VSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG 1499 (1513)
Q Consensus 1431 ---------~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg 1499 (1513)
........-+++|. .+++...+.|..++++. +++.++++-+.+.....|+..+||.
T Consensus 119 ~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY-------------SGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp CCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred cccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc-------------CCCceEEEEeCchhhCcchhhccCc
Confidence 01123457899995 35666666777776643 2467788888888888999999999
Q ss_pred EEEeeCC
Q psy4730 1500 MIYFELK 1506 (1513)
Q Consensus 1500 ~v~~~~~ 1506 (1513)
.+.+.+-
T Consensus 186 ~i~~~~~ 192 (353)
T 1sxj_D 186 KFRFKAL 192 (353)
T ss_dssp EEECCCC
T ss_pred eEEeCCC
Confidence 8887653
No 87
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.07 E-value=0.00099 Score=81.52 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=65.3
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
++++|+|||||||||+.+.+++.++ .....++......+++ .+++..+.....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~--------------~~f~~l~a~~~~~~~i------------r~~~~~a~~~~~- 103 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN--------------ADVERISAVTSGVKEI------------REAIERARQNRN- 103 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT--------------CEEEEEETTTCCHHHH------------HHHHHHHHHHHH-
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC--------------CCeEEEEeccCCHHHH------------HHHHHHHHHhhh-
Confidence 4799999999999999999998764 2344455433222221 122222222111
Q ss_pred cCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec-CC-CCCCcchhhccEEEEeeCC
Q psy4730 1432 STTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE-NL-EFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1432 ~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~-~l-~~asPatvsRcg~v~~~~~ 1506 (1513)
......+++|. .+...-.+.|..+|++. .+.+|+.|+ +. ....|+..|||.++.+.+-
T Consensus 104 --~~~~~iLfIDEI~~l~~~~q~~LL~~le~~---------------~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l 165 (447)
T 3pvs_A 104 --AGRRTILFVDEVHRFNKSQQDAFLPHIEDG---------------TITFIGATTENPSFELNSALLSRARVYLLKSL 165 (447)
T ss_dssp --TTCCEEEEEETTTCC------CCHHHHHTT---------------SCEEEEEESSCGGGSSCHHHHTTEEEEECCCC
T ss_pred --cCCCcEEEEeChhhhCHHHHHHHHHHHhcC---------------ceEEEecCCCCcccccCHHHhCceeEEeeCCc
Confidence 23568899993 44444455666666542 256666663 33 2567999999999887763
No 88
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.04 E-value=0.00096 Score=68.39 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730 716 CMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 716 ~~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
.+....+..+...+.||||.||||||||++++.+....
T Consensus 11 ~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 11 NQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34445556667889999999999999999999887654
No 89
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.02 E-value=0.00049 Score=82.53 Aligned_cols=94 Identities=19% Similarity=0.298 Sum_probs=53.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
.++++|+||||||||++.+.+++.++ ..+..++...++...++|.- ..+.+..+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~--------------~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~ 130 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD--------------IPIAISDATSLTEAGYVGED-------VENILTRLLQASD 130 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT--------------CCEEEEEGGGCC---------------CTHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEecchhhhhcCcCCcc-------HHHHHHHHHhhcc
Confidence 56899999999999999999998763 23456666666555555531 1345555544321
Q ss_pred cc-CCCCceEEEEcC--CCChH--------------HHHhhhcccCCCCceee
Q psy4730 1431 VS-TTPDRKWIMFDG--PIDAV--------------WIENMNTVLDDNKKLCL 1466 (1513)
Q Consensus 1431 ~~-~~~~~~WivfDG--~~d~~--------------wiE~LNsvLDdn~~L~L 1466 (1513)
.. .......+++|. .+.+. ..+.|..+||+ +.+.+
T Consensus 131 ~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~-~~~~~ 182 (376)
T 1um8_A 131 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEG-SLVNI 182 (376)
T ss_dssp TCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHC-CEEC-
T ss_pred chhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhc-cceec
Confidence 00 011346888883 33333 67888888884 34333
No 90
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.02 E-value=0.0018 Score=77.13 Aligned_cols=138 Identities=13% Similarity=0.097 Sum_probs=77.5
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhh-cccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-SATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 1428 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~-~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~ 1428 (1513)
..|+++|.||+|+||||+.+.+++.++.-.... ..+..+. .+..+.... ..++++ +++......+ .+..++..
T Consensus 37 ~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~-~~~~~~~~~~-~~~~l~~~ 110 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD--NCREIEQGR--FVDLIE-IDAASRTKVE-DTRDLLDN 110 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH--HHHHHHTSC--CSSCEE-EETTCSCCSS-CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH--HHHHHhccC--CCceEE-ecccccCCHH-HHHHHHHH
Confidence 346899999999999999999998875311100 0000000 000000000 001111 1111111112 23344444
Q ss_pred hhccC-CCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730 1429 MAVST-TPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1429 ~~~~~-~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
....+ ......+|+|. .+++...+.|-..|++ .|+++.+|+-+.+.....|+..|||..+.+.+
T Consensus 111 ~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-------------~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~ 177 (373)
T 1jr3_A 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 177 (373)
T ss_dssp TTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-------------CCSSEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred HhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-------------CCCceEEEEEeCChHhCcHHHHhheeEeeCCC
Confidence 43322 34568999995 3455555666555543 36678899999888888899999999888876
Q ss_pred C
Q psy4730 1506 K 1506 (1513)
Q Consensus 1506 ~ 1506 (1513)
-
T Consensus 178 l 178 (373)
T 1jr3_A 178 L 178 (373)
T ss_dssp C
T ss_pred C
Confidence 3
No 91
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.01 E-value=0.016 Score=71.53 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=35.4
Q ss_pred ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
.+.++|++|.|.. +++.++| ||. .+.++.|+.+....|+...+.
T Consensus 169 ~viviAatn~p~~-LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 169 AIVVMAATNRPDI-LDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp CCEEEECCSCGGG-SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred cEEEEEecCChhh-cCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence 5678889988854 8999998 564 689999999999999876554
No 92
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.00 E-value=0.00092 Score=77.67 Aligned_cols=44 Identities=7% Similarity=0.135 Sum_probs=36.7
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
++.++++++.+ ..+.+.+.+|+..+.+.+|+.+++..+...++.
T Consensus 132 ~~~~i~~~~~~-~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 132 SCRFILSCNYV-SRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp SEEEEEEESCG-GGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCh-hhcchHHHhhCeEEEecCCCHHHHHHHHHHHHH
Confidence 56778887764 368899999999999999999999988887754
No 93
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.00 E-value=0.00044 Score=73.42 Aligned_cols=129 Identities=13% Similarity=0.102 Sum_probs=69.1
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
..+++|+||+|+|||++++.+++.+...... .......+..++. .++..... ..++| ...+..+++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~-~~~~~-~~~~~~~~~~~~ 111 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVP----EGLKGRRVLALDM-----GALVAGAK-YRGEF-EERLKGVLNDLA 111 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSC----GGGTTCEEEEECH-----HHHHTTTC-SHHHH-HHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCc----hhhcCCcEEEeeH-----HHHhccCC-ccccH-HHHHHHHHHHHh
Confidence 4689999999999999999999887541100 0000123333332 22221000 00001 011222333221
Q ss_pred ccCCCCceEEEEcC--CC--------ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC-----CCCcchh
Q psy4730 1431 VSTTPDRKWIMFDG--PI--------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-----FASPATV 1495 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG--~~--------d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~-----~asPatv 1495 (1513)
. ......+++|. .+ +....+.|+.+++. .++.+|+.+.+.. ...|+..
T Consensus 112 ~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~l~ 174 (195)
T 1jbk_A 112 K--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR---------------GELHCVGATTLDEYRQYIEKDAALE 174 (195)
T ss_dssp H--STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT---------------TSCCEEEEECHHHHHHHTTTCHHHH
T ss_pred h--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc---------------CCeEEEEeCCHHHHHHHHhcCHHHH
Confidence 1 23356899995 11 12224444444432 3567788776654 5689999
Q ss_pred hccEEEEeeCCC
Q psy4730 1496 SRVGMIYFELKC 1507 (1513)
Q Consensus 1496 sRcg~v~~~~~~ 1507 (1513)
+||..|++.+-.
T Consensus 175 ~r~~~i~~~~p~ 186 (195)
T 1jbk_A 175 RRFQKVFVAEPS 186 (195)
T ss_dssp TTEEEEECCCCC
T ss_pred HHhceeecCCCC
Confidence 999988887643
No 94
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.94 E-value=0.00047 Score=73.02 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=67.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
.++|+|+||+|+|||++.+.+++.+..-... .......+..++. .++..... ..+.| ...+..+++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~-~~~~~-~~~~~~~~~~~~ 111 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVP----DSLKGRKLVSLDL-----SSLIAGAK-YRGDF-EERLKSILKEVQ 111 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSC----TTTTTCEEEEECH-----HHHHHHCC-SHHHH-HHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCc----chhcCCeEEEEeH-----HHhhcCCC-chhHH-HHHHHHHHHHHH
Confidence 5689999999999999999999887531100 0000122333332 22211000 00011 112233333332
Q ss_pred ccCCCCceEEEEcC--CCC---------hHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC-----CCCCcch
Q psy4730 1431 VSTTPDRKWIMFDG--PID---------AVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL-----EFASPAT 1494 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG--~~d---------~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l-----~~asPat 1494 (1513)
. ......+++|. .+. ....+.|..++++ .++.+|+.+..- ....|+.
T Consensus 112 ~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~ii~~~~~~~~~~~~~~~~~l 174 (187)
T 2p65_A 112 D--AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR---------------GELRCIGATTVSEYRQFIEKDKAL 174 (187)
T ss_dssp H--TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT---------------TCSCEEEEECHHHHHHHTTTCHHH
T ss_pred h--cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc---------------CCeeEEEecCHHHHHHHHhccHHH
Confidence 2 12346899994 111 2233334444432 356677766543 2568999
Q ss_pred hhccEEEEeeCC
Q psy4730 1495 VSRVGMIYFELK 1506 (1513)
Q Consensus 1495 vsRcg~v~~~~~ 1506 (1513)
.+||..|++.+-
T Consensus 175 ~~R~~~i~i~~p 186 (187)
T 2p65_A 175 ERRFQQILVEQP 186 (187)
T ss_dssp HHHEEEEECCSC
T ss_pred HHhcCcccCCCC
Confidence 999999988753
No 95
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.92 E-value=0.0022 Score=76.52 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=38.4
Q ss_pred ceEEEEeecCC--CCCCChhhhccc--eEeecCCCChHHHHHHHHHHhhhhh
Q psy4730 933 DIIYITAMIPT--MNTITGRLLRHM--NIISIDSFNEATLSKIFTSVLDWHF 980 (1513)
Q Consensus 933 ~~~~~~a~~~~--~~~~~~r~~~~f--~~~~~~~~~~~~l~~i~~~~l~~~~ 980 (1513)
++.+|++++.+ ...+.+++.++| ..+.+++|+.+++..|+...+...+
T Consensus 163 ~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~ 214 (386)
T 2qby_A 163 KISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF 214 (386)
T ss_dssp -EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB
T ss_pred eEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc
Confidence 56778887765 356889999999 6899999999999999998776433
No 96
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.89 E-value=0.00029 Score=84.12 Aligned_cols=96 Identities=17% Similarity=0.264 Sum_probs=58.5
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
...+|+|+||||||||++.+.+++.++ ..+..+++..+...+++|.- ..|.+..+++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~--------------~~~~~~~~~~l~~~~~~g~~-------~~~~~~~~~~~~ 108 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD--------------VPFTMADATTLTEAGYVGED-------VENIIQKLLQKC 108 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT--------------CCEEEEEHHHHTTCHHHHHH-------HTHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC--------------CCEEEechHHhccccccccc-------HHHHHHHHHHHh
Confidence 356899999999999999999998874 34566676666555666642 134555555543
Q ss_pred hcc-CCCCceEEEEcC--CCChH--------------HHHhhhcccCCCCceeec
Q psy4730 1430 AVS-TTPDRKWIMFDG--PIDAV--------------WIENMNTVLDDNKKLCLI 1467 (1513)
Q Consensus 1430 ~~~-~~~~~~WivfDG--~~d~~--------------wiE~LNsvLDdn~~L~L~ 1467 (1513)
... ......-+++|. .+.+. ....|-.+|| .....++
T Consensus 109 ~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~~ 162 (363)
T 3hws_A 109 DYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVP 162 (363)
T ss_dssp TTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC-----
T ss_pred hhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhc-Cceeecc
Confidence 100 001235788993 12222 7888888998 5555554
No 97
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.89 E-value=0.0007 Score=86.37 Aligned_cols=146 Identities=15% Similarity=0.179 Sum_probs=89.5
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcc----ccccc------------------------------
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA----TMKEF------------------------------ 1389 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~----~~~~~------------------------------ 1389 (1513)
+..++...+.++|+|||||||||+.+.++..+..-...... .....
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r 132 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAKSQESVK 132 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhccchhhh
Confidence 44456677899999999999999999999876421100000 00000
Q ss_pred -----------ceeEE----------EecCCCCChhhccccccCCC---CCC--------ccCHHHHHHHHhhccCCCCc
Q psy4730 1390 -----------KTGYK----------IINPKSITMGQLYGEFDSAS---HEW--------RDGILAKTFREMAVSTTPDR 1437 (1513)
Q Consensus 1390 -----------~~~~~----------~inp~~~t~~eL~G~~~~~t---~eW--------~DG~l~~~lR~~~~~~~~~~ 1437 (1513)
..+.. .+.....+..+|||.++... +.+ ..|.+..+ ..
T Consensus 133 ~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a----------~~ 202 (604)
T 3k1j_A 133 SSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRA----------HK 202 (604)
T ss_dssp ----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHT----------TT
T ss_pred hhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceeeec----------CC
Confidence 00000 12223556788999875322 112 33433321 23
Q ss_pred eEEEEc--CCCChHHHHhhhcccCCCCceeecCCC--------eeecCCCCeEEEeecCC--CCCCcchhhccE
Q psy4730 1438 KWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGE--------IIKMSNTMNLIFECENL--EFASPATVSRVG 1499 (1513)
Q Consensus 1438 ~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe--------~i~~~~~~~~iFE~~~l--~~asPatvsRcg 1499 (1513)
.++++| +.+++..-+.|..+|++...-....++ .-.+|.++++|+-+..- ....|+..+||.
T Consensus 203 gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~ 276 (604)
T 3k1j_A 203 GVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIR 276 (604)
T ss_dssp SEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHH
T ss_pred CEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhh
Confidence 699999 567888889999999765433222222 34567789999988643 578999999995
No 98
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.88 E-value=0.0019 Score=74.51 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=37.4
Q ss_pred ceEEEEeecCCCCCCChhhhccc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHM-NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.+++|+|.+. .+++.++||| ..++++.|+.+....|+..++..
T Consensus 159 ~v~vi~~tn~~~-~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~ 204 (297)
T 3b9p_A 159 RIVVLAATNRPQ-ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK 204 (297)
T ss_dssp CEEEEEEESCGG-GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG
T ss_pred cEEEEeecCChh-hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 477888888774 6889999999 57999999999999988877654
No 99
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.88 E-value=0.0012 Score=78.89 Aligned_cols=131 Identities=15% Similarity=0.273 Sum_probs=72.1
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhccccccc-ceeEEEecCCCCC----------hhhccccccCCCCCCc-
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEF-KTGYKIINPKSIT----------MGQLYGEFDSASHEWR- 1418 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~-~~~~~~inp~~~t----------~~eL~G~~~~~t~eW~- 1418 (1513)
.++|+|.||+|+|||++++.+++.+..-.... ... ...+..+|+.... ..++.|.--+ .....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~ 119 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKED----EEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVP-KHGINL 119 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHS----SSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCC-SSSSCT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhh----cCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCC-CCCCCH
Confidence 35799999999999999999998875421100 000 2345556644433 3344443111 11222
Q ss_pred cCHHHHHHHHhhccCCCCceEEEEcCCCChH----HHHh-hhcccCCCCceeecCCCeeecCCCCeEEEeecCC---CCC
Q psy4730 1419 DGILAKTFREMAVSTTPDRKWIMFDGPIDAV----WIEN-MNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL---EFA 1490 (1513)
Q Consensus 1419 DG~l~~~lR~~~~~~~~~~~WivfDG~~d~~----wiE~-LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l---~~a 1490 (1513)
+.++..+..... .....|++|. +|.. +.+. +..+++-. +++.+|+-+.+. ...
T Consensus 120 ~~~~~~l~~~l~----~~~~vlilDE-i~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~~~~l 180 (384)
T 2qby_B 120 GEYIDKIKNGTR----NIRAIIYLDE-VDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINVRDYM 180 (384)
T ss_dssp HHHHHHHHHHHS----SSCEEEEEET-THHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTTTTTS
T ss_pred HHHHHHHHHHhc----cCCCEEEEEC-HHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCchHhhh
Confidence 233333333221 1123899995 2111 1233 44444321 677888887766 567
Q ss_pred Ccchhhcc-EEEEeeC
Q psy4730 1491 SPATVSRV-GMIYFEL 1505 (1513)
Q Consensus 1491 sPatvsRc-g~v~~~~ 1505 (1513)
.|+..+|+ ..+.+.|
T Consensus 181 ~~~l~sr~~~~i~l~~ 196 (384)
T 2qby_B 181 EPRVLSSLGPSVIFKP 196 (384)
T ss_dssp CHHHHHTCCCEEEECC
T ss_pred CHHHHhcCCCeEEECC
Confidence 88989994 5777765
No 100
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.85 E-value=0.0014 Score=80.33 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=36.3
Q ss_pred cceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
.++.+++|+|.+ ..++|.++| ||. .+.++.|+.+....|+..++.
T Consensus 153 ~~viVIaaTn~~-~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~ 200 (476)
T 2ce7_A 153 EGIIVMAATNRP-DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTR 200 (476)
T ss_dssp GTEEEEEEESCG-GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCEEEEEecCCh-hhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHH
Confidence 368899999987 357888887 887 689999999988888876554
No 101
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.82 E-value=0.0017 Score=77.74 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=24.7
Q ss_pred CCChhhhccc-eEeecCCCChHHHHHHHHH
Q psy4730 946 TITGRLLRHM-NIISIDSFNEATLSKIFTS 974 (1513)
Q Consensus 946 ~~~~r~~~~f-~~~~~~~~~~~~l~~i~~~ 974 (1513)
.+.|.|++|+ .++.+++++.+++..|...
T Consensus 255 ~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 255 GLIPELIGRLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp TCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred CCChHHhcCCCceeeccCCCHHHHHHHHhh
Confidence 4678899999 7789999999999998873
No 102
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.77 E-value=0.0049 Score=72.62 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=35.4
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
...++.++|++ ..+.|.+.+|+..+.+.+++.+++..+...++.
T Consensus 140 ~~~~il~~n~~-~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 140 NTRFCVLANYA-HKLTPALLSQCTRFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp TEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEEecCc-cccchhHHhhceeEeccCCCHHHHHHHHHHHHH
Confidence 34566667654 468899999999999999999999988887764
No 103
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.75 E-value=0.0013 Score=74.25 Aligned_cols=123 Identities=14% Similarity=0.271 Sum_probs=67.0
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
...||+|+||||||||++.+.+++.++ ..+..+++..+. +.|+.. ....+..+++.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~--------------~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~a 94 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ--------------VPFLAMAGAEFV--EVIGGL-------GAARVRSLFKEA 94 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT--------------CCEEEEETTTTS--SSSTTH-------HHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEechHHHH--hhccCh-------hHHHHHHHHHHH
Confidence 456899999999999999999988764 234556654432 122211 111222333333
Q ss_pred hccCCCCceEEEEcCC--C------------ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchh
Q psy4730 1430 AVSTTPDRKWIMFDGP--I------------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 1495 (1513)
Q Consensus 1430 ~~~~~~~~~WivfDG~--~------------d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatv 1495 (1513)
.. .....+++|.- + +...-+.++.+|.. .++ +.-++++.++.-+.......|+..
T Consensus 95 ~~---~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~------~~~--~~~~~~~~vi~~tn~~~~ld~~l~ 163 (262)
T 2qz4_A 95 RA---RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVE------MDG--MGTTDHVIVLASTNRADILDGALM 163 (262)
T ss_dssp HH---TCSEEEEEECC-------------------CHHHHHHHHH------HHT--CCTTCCEEEEEEESCGGGGGSGGG
T ss_pred Hh---cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHH------hhC--cCCCCCEEEEecCCChhhcCHHHh
Confidence 21 12468888841 1 22233445555431 000 112446677777766666678888
Q ss_pred h--ccE-EEEeeCC
Q psy4730 1496 S--RVG-MIYFELK 1506 (1513)
Q Consensus 1496 s--Rcg-~v~~~~~ 1506 (1513)
+ |+. .+++++-
T Consensus 164 ~~~R~~~~i~i~~p 177 (262)
T 2qz4_A 164 RPGRLDRHVFIDLP 177 (262)
T ss_dssp STTSCCEEEECCSC
T ss_pred cCCcCCeEEEeCCc
Confidence 8 884 5565543
No 104
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.72 E-value=0.0031 Score=71.78 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=22.8
Q ss_pred cCCccceeccCCCccchHhHHHHHhcc
Q psy4730 727 QNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
....++||+||||||||+++..+...+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344689999999999999999888754
No 105
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.72 E-value=0.0013 Score=67.16 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCccceeccCCCccchHhHHHHHhc
Q psy4730 717 MQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLN 752 (1513)
Q Consensus 717 ~~~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~ 752 (1513)
+....+..+...+.||||.||||||||++++.+...
T Consensus 15 ~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 15 EMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred HHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 444455566788999999999999999988866543
No 106
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.67 E-value=0.0029 Score=72.89 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=65.0
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
.++|+|+||||||||++.+.+++.++ ..+..+++..+ ++.+...+ ......++..+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~--------------~~~~~i~~~~l-----~~~~~~~~----~~~~~~~~~~~~ 110 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS--------------ATFLNISAASL-----TSKYVGDG----EKLVRALFAVAR 110 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT--------------CEEEEEESTTT-----SSSSCSCH----HHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC--------------CCeEEeeHHHH-----hhcccchH----HHHHHHHHHHHH
Confidence 57999999999999999999987653 24455665433 33222111 111122222221
Q ss_pred ccCCCCceEEEEcCCC-------------ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhc
Q psy4730 1431 VSTTPDRKWIMFDGPI-------------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSR 1497 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG~~-------------d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsR 1497 (1513)
......|++|..= .......|-..+|.-. .-....++.++.-|.+.....|+..+|
T Consensus 111 ---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~~v~vi~~tn~~~~l~~~l~~R 179 (297)
T 3b9p_A 111 ---HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLP--------GNPDGDRIVVLAATNRPQELDEAALRR 179 (297)
T ss_dssp ---HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEESCGGGBCHHHHHH
T ss_pred ---HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccc--------ccCCCCcEEEEeecCChhhCCHHHHhh
Confidence 1234788999520 0111111111122110 001124567777777777889999999
Q ss_pred cE-EEEeeCC
Q psy4730 1498 VG-MIYFELK 1506 (1513)
Q Consensus 1498 cg-~v~~~~~ 1506 (1513)
|. .++++..
T Consensus 180 ~~~~i~~~~p 189 (297)
T 3b9p_A 180 FTKRVYVSLP 189 (297)
T ss_dssp CCEEEECCCC
T ss_pred CCeEEEeCCc
Confidence 94 5666543
No 107
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.65 E-value=0.0023 Score=75.71 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=44.1
Q ss_pred CceEEEEcCC--CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730 1436 DRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1436 ~~~WivfDG~--~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
..+.+|+|.+ +|+.-.+.|-..|++ .++++.+|+-+++.....|+..|||..+.|.+-
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~-------------~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~ 193 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEK-------------YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAP 193 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHH-------------STTTEEEEEEESCSCSSCHHHHTTSEEEECCCC
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHh-------------hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCc
Confidence 5789999954 566655666555543 135688999999999999999999988888763
No 108
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.64 E-value=0.0044 Score=73.03 Aligned_cols=113 Identities=17% Similarity=0.223 Sum_probs=68.0
Q ss_pred EEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCH--HHHHHHHhhc
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI--LAKTFREMAV 1431 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~--l~~~lR~~~~ 1431 (1513)
++++||+|+||||+++.+++.+..-.. ...+..+|+... .|+ +-..++...+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~---------~~~~~~~~~~~~-----------------~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNY---------SNMVLELNASDD-----------------RGIDVVRNQIKDFAS 102 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSH---------HHHEEEECTTSC-----------------CSHHHHHTHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCc---------cceEEEEcCccc-----------------ccHHHHHHHHHHHHh
Confidence 999999999999999999998752110 122333343210 121 1112222221
Q ss_pred cC---CCCceEEEEcCC--CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeC
Q psy4730 1432 ST---TPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 1505 (1513)
Q Consensus 1432 ~~---~~~~~WivfDG~--~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~ 1505 (1513)
.. ....+.+|+|.. +...-.+.|..+++. .|+++.+++-+......-|+..|||..+.+.+
T Consensus 103 ~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~ 168 (340)
T 1sxj_C 103 TRQIFSKGFKLIILDEADAMTNAAQNALRRVIER-------------YTKNTRFCVLANYAHKLTPALLSQCTRFRFQP 168 (340)
T ss_dssp BCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHH-------------TTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred hcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhc-------------CCCCeEEEEEecCccccchhHHhhceeEeccC
Confidence 11 134788999952 333333444444432 24567788888777888999999999888765
No 109
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.63 E-value=0.0092 Score=70.90 Aligned_cols=45 Identities=7% Similarity=0.192 Sum_probs=36.0
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.++++++.+ ..+.+.+.+|+..+.+.+|+.+++..+...++..
T Consensus 149 ~~~~Il~~~~~-~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 149 HVKFLLATTDP-QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp SEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCh-HhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH
Confidence 46677776543 3578899999999999999999999988887653
No 110
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.62 E-value=0.0039 Score=76.36 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=68.4
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
.+||+|+||||||||++.+.++..+.. ..+..+++..+. ..+.|. + ...+..++..+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~-------------~~~~~v~~~~l~-~~~~g~----~----~~~~~~~f~~a~ 224 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANN-------------STFFSISSSDLV-SKWLGE----S----EKLVKNLFQLAR 224 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCS-------------SEEEEECCC--------------C----CCTHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC-------------CCEEEEeHHHHH-hhhcch----H----HHHHHHHHHHHH
Confidence 479999999999999999999877521 245556654332 122232 1 223344444332
Q ss_pred ccCCCCceEEEEcCCCCh----------HH-HHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccE
Q psy4730 1431 VSTTPDRKWIMFDGPIDA----------VW-IENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG 1499 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG~~d~----------~w-iE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg 1499 (1513)
. .....|++|. +|. .. -..+|.+| ..-+|-. .-++++.+|.-|.......||..+||.
T Consensus 225 ~---~~~~vl~iDE-id~l~~~~~~~~~~~~~~~~~~lL------~~l~~~~-~~~~~v~vI~atn~~~~ld~al~rRf~ 293 (444)
T 2zan_A 225 E---NKPSIIFIDE-IDSLCGSRSENESEAARRIKTEFL------VQMQGVG-VDNDGILVLGATNIPWVLDSAIRRRFE 293 (444)
T ss_dssp H---SCSEEEEESC-TTTTCCCSSCCCCGGGHHHHHHHH------TTTTCSS-CCCSSCEEEEEESCGGGSCHHHHTTCC
T ss_pred H---cCCeEEEEec-hHhhccCCCCccccHHHHHHHHHH------HHHhCcc-cCCCCEEEEecCCCccccCHHHHhhcc
Confidence 1 2347888883 111 10 11112222 1111111 124567888888777888999999995
Q ss_pred -EEEeeCCC
Q psy4730 1500 -MIYFELKC 1507 (1513)
Q Consensus 1500 -~v~~~~~~ 1507 (1513)
.++++..+
T Consensus 294 ~~i~i~~P~ 302 (444)
T 2zan_A 294 KRIYIPLPE 302 (444)
T ss_dssp EEEECCCCC
T ss_pred eEEEeCCcC
Confidence 66776543
No 111
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.62 E-value=0.0009 Score=80.62 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=67.8
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
.++|+|+||||+|||++.+.++..++ ..+..+++..+.. .+.|.. .+.+..+++.+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~--------------~~~~~v~~~~l~~-~~~g~~--------~~~~~~~~~~a~ 204 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN--------------ATFFNISAASLTS-KYVGEG--------EKLVRALFAVAR 204 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT--------------CEEEEECSCCC--------C--------HHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc--------------CcEEEeeHHHhhc-cccchH--------HHHHHHHHHHHH
Confidence 47999999999999999999977643 3567777754431 222211 223334444332
Q ss_pred ccCCCCceEEEEcCCCChHH-------HHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccE-EEE
Q psy4730 1431 VSTTPDRKWIMFDGPIDAVW-------IENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG-MIY 1502 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG~~d~~w-------iE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg-~v~ 1502 (1513)
. .....|++|. +|... -+....++ +..|...+|-.-..+.++.+|.-+.......|+..+||. .|+
T Consensus 205 ~---~~~~il~iDE-id~l~~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~ 278 (389)
T 3vfd_A 205 E---LQPSIIFIDQ-VDSLLCERREGEHDASRRLK--TEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVY 278 (389)
T ss_dssp H---SSSEEEEEET-GGGGC--------CTHHHHH--HHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEE
T ss_pred h---cCCeEEEEEC-chhhcccCCCccchHHHHHH--HHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEE
Confidence 2 1236888884 21110 00000000 011111122222234567788888877888999999996 677
Q ss_pred eeCC
Q psy4730 1503 FELK 1506 (1513)
Q Consensus 1503 ~~~~ 1506 (1513)
++.-
T Consensus 279 i~~p 282 (389)
T 3vfd_A 279 VSLP 282 (389)
T ss_dssp CCCC
T ss_pred cCCc
Confidence 7654
No 112
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.62 E-value=0.0033 Score=77.37 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=47.0
Q ss_pred cccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCC---------CCCCCCCchhHHh
Q psy4730 1125 WACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPG---------YAGRTELPDNLKV 1195 (1513)
Q Consensus 1125 W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~---------y~gr~~LP~nLk~ 1195 (1513)
-.++||+++++.+..+++- +++..+ ...+-|++| ||+ ......||+.+++
T Consensus 298 VliIDEa~~l~~~a~~aLl-------k~lEe~-------------~~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i~s 356 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLH-------RALESS-------------IAPIVIFAS-NRGNCVIRGTEDITSPHGIPLDLLD 356 (456)
T ss_dssp EEEEESGGGCBHHHHHHHH-------HHTTST-------------TCCEEEEEE-CCSEEECBTTSSCEEETTCCHHHHT
T ss_pred EEEEechhhcCHHHHHHHH-------HHhhcc-------------CCCEEEEec-CCccccccccccccccccCChhHHh
Confidence 4578999999988776552 222221 112334456 663 2234579999999
Q ss_pred hhhcccccCCChHHHHHHHH
Q psy4730 1196 LFRSVAMMVPDYAMIGEISL 1215 (1513)
Q Consensus 1196 lFR~v~~~~PD~~~I~ei~L 1215 (1513)
+|..+.+..++...+.+++-
T Consensus 357 R~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 357 RVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp TEEEEECCCCCHHHHHHHHH
T ss_pred hcceeeCCCCCHHHHHHHHH
Confidence 99999888888877777664
No 113
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.58 E-value=0.0035 Score=73.41 Aligned_cols=124 Identities=16% Similarity=0.201 Sum_probs=69.1
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
.+||+|+||||||||++.+.++..+.. ..+..+++..+. ..+.|. ....+..++..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~-------------~~~~~i~~~~l~-~~~~g~--------~~~~~~~lf~~a~ 102 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANN-------------STFFSISSSDLV-SKWLGE--------SEKLVKNLFQLAR 102 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTS-------------CEEEEEECCSSC-CSSCCS--------CHHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCC-------------CcEEEEEhHHHH-hhhhhH--------HHHHHHHHHHHHH
Confidence 379999999999999999999877521 345556655432 112221 1223333333332
Q ss_pred ccCCCCceEEEEcCCCChH----------HHH-hhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhcc-
Q psy4730 1431 VSTTPDRKWIMFDGPIDAV----------WIE-NMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRV- 1498 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG~~d~~----------wiE-~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRc- 1498 (1513)
. .....|++|. +|.. ... .+|.+| ...+|-. .-+.++.+|.-|.......||..+||
T Consensus 103 ~---~~~~vl~iDE-id~l~~~~~~~~~~~~~~~~~~ll------~~ld~~~-~~~~~v~vI~atn~~~~ld~al~rRf~ 171 (322)
T 1xwi_A 103 E---NKPSIIFIDE-IDSLCGSRSENESEAARRIKTEFL------VQMQGVG-VDNDGILVLGATNIPWVLDSAIRRRFE 171 (322)
T ss_dssp H---TSSEEEEEET-TTGGGCCSSSCCTTHHHHHHHHHH------HHHHCSS-SCCTTEEEEEEESCTTTSCHHHHHTCC
T ss_pred h---cCCcEEEeec-HHHhccccccccchHHHHHHHHHH------HHHhccc-ccCCCEEEEEecCCcccCCHHHHhhcC
Confidence 1 2357899994 2211 111 111111 1111100 01356677777777778899999999
Q ss_pred EEEEeeCCC
Q psy4730 1499 GMIYFELKC 1507 (1513)
Q Consensus 1499 g~v~~~~~~ 1507 (1513)
-.++++..+
T Consensus 172 ~~i~i~~P~ 180 (322)
T 1xwi_A 172 KRIYIPLPE 180 (322)
T ss_dssp EEEECCCCC
T ss_pred eEEEeCCcC
Confidence 567776543
No 114
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.54 E-value=0.0021 Score=76.44 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=67.4
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
..++|+|+||||||||++.+.+++.++ ..+..+++. ++++.+- |-....++..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~--------------~~~~~i~~~-----~l~~~~~--------g~~~~~~~~~ 168 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG--------------ATFFSISAS-----SLTSKWV--------GEGEKMVRAL 168 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT--------------CEEEEEEGG-----GGCCSST--------THHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC--------------CeEEEEehH-----Hhhcccc--------chHHHHHHHH
Confidence 457999999999999999999987653 244556553 3333321 2222333322
Q ss_pred hc-cCCCCceEEEEcCC--C--------ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhcc
Q psy4730 1430 AV-STTPDRKWIMFDGP--I--------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRV 1498 (1513)
Q Consensus 1430 ~~-~~~~~~~WivfDG~--~--------d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRc 1498 (1513)
.. ........|++|.. + +..-...++.+| ..-+|-.-..+.++.+|.-|.......||..+||
T Consensus 169 ~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL------~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf 242 (357)
T 3d8b_A 169 FAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFL------VQLDGATTSSEDRILVVGATNRPQEIDEAARRRL 242 (357)
T ss_dssp HHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHH------HHHHC----CCCCEEEEEEESCGGGBCHHHHTTC
T ss_pred HHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHH------HHHhcccccCCCCEEEEEecCChhhCCHHHHhhC
Confidence 11 01123578999941 0 000011111221 1111222223456777777877777889999999
Q ss_pred E-EEEeeCC
Q psy4730 1499 G-MIYFELK 1506 (1513)
Q Consensus 1499 g-~v~~~~~ 1506 (1513)
. .+++..-
T Consensus 243 ~~~i~i~~p 251 (357)
T 3d8b_A 243 VKRLYIPLP 251 (357)
T ss_dssp CEEEECCCC
T ss_pred ceEEEeCCc
Confidence 7 5566543
No 115
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.52 E-value=0.0028 Score=64.92 Aligned_cols=97 Identities=7% Similarity=0.012 Sum_probs=59.6
Q ss_pred HHHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHH
Q psy4730 1343 QVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGIL 1422 (1513)
Q Consensus 1343 qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l 1422 (1513)
++..+.....+|+|.||||||||++.+.++....+- ...+. +|+..++.. ....|.+
T Consensus 16 ~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-----------~~~~v-~~~~~~~~~-----------~~~~~~~ 72 (145)
T 3n70_A 16 RLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-----------QGEFV-YRELTPDNA-----------PQLNDFI 72 (145)
T ss_dssp HHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-----------TSCCE-EEECCTTTS-----------SCHHHHH
T ss_pred HHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-----------CCCEE-EECCCCCcc-----------hhhhcHH
Confidence 344455677899999999999999999997654321 11233 666655422 2233333
Q ss_pred HHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730 1423 AKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus 1423 ~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
. .+. ..-+++| +.+++..-+.|-.+|. ..+.++++|+-+.
T Consensus 73 ~----~a~------~g~l~ldei~~l~~~~q~~Ll~~l~-------------~~~~~~~~I~~t~ 114 (145)
T 3n70_A 73 A----LAQ------GGTLVLSHPEHLTREQQYHLVQLQS-------------QEHRPFRLIGIGD 114 (145)
T ss_dssp H----HHT------TSCEEEECGGGSCHHHHHHHHHHHH-------------SSSCSSCEEEEES
T ss_pred H----HcC------CcEEEEcChHHCCHHHHHHHHHHHh-------------hcCCCEEEEEECC
Confidence 2 221 1357888 5667777777777771 1245677777664
No 116
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.51 E-value=0.0017 Score=77.09 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=67.6
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
.+||+|+||||||||++.+.++..++ ..+..+++ .++++.+-... +..+..++..+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~--------------~~~~~v~~-----~~l~~~~~g~~----~~~~~~~f~~a~ 140 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN--------------STFFSVSS-----SDLVSKWMGES----EKLVKQLFAMAR 140 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT--------------CEEEEEEH-----HHHHSCC---C----HHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC--------------CCEEEeeH-----HHHhhhhcchH----HHHHHHHHHHHH
Confidence 46899999999999999999998764 23444443 34444332111 122223333221
Q ss_pred ccCCCCceEEEEcCCCCh--------------HHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh
Q psy4730 1431 VSTTPDRKWIMFDGPIDA--------------VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS 1496 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG~~d~--------------~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs 1496 (1513)
. .....|++|. +|. .+.+.|-..||.-. .-+.++.+|.-|.......||..+
T Consensus 141 ~---~~~~vl~iDE-id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vI~atn~~~~ld~al~r 206 (355)
T 2qp9_X 141 E---NKPSIIFIDQ-VDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPWQLDSAIRR 206 (355)
T ss_dssp H---TSSEEEEEEC-GGGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEEEEEEESCGGGSCHHHHH
T ss_pred H---cCCeEEEEec-hHhhcccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEEEeecCCcccCCHHHHc
Confidence 1 2347889993 211 12233333333110 113456777777777778899999
Q ss_pred cc-EEEEeeCCC
Q psy4730 1497 RV-GMIYFELKC 1507 (1513)
Q Consensus 1497 Rc-g~v~~~~~~ 1507 (1513)
|| -.+++++-+
T Consensus 207 Rf~~~i~i~~P~ 218 (355)
T 2qp9_X 207 RFERRIYIPLPD 218 (355)
T ss_dssp TCCEEEECCCCC
T ss_pred ccCEEEEeCCcC
Confidence 99 566666543
No 117
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.50 E-value=0.0053 Score=72.21 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=36.8
Q ss_pred ecceEEEEeecCCCCCCChhhhccce-EeecCCCChHHHHHHHHHHhh
Q psy4730 931 LVDIIYITAMIPTMNTITGRLLRHMN-IISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 931 ~~~~~~~~a~~~~~~~~~~r~~~~f~-~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
+..+.+++|.+++ ..+++++.+||. .+.+++|+.+++..|......
T Consensus 148 l~~~~li~at~~~-~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 148 IQPFTLVGATTRS-GLLSSPLRSRFGIILELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp -CCCEEEEEESCG-GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCc-ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHH
Confidence 3457777776665 478999999996 478999999999999988654
No 118
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.47 E-value=0.0033 Score=75.01 Aligned_cols=141 Identities=12% Similarity=0.043 Sum_probs=74.6
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhh----ccccccCC--CCCCc-cCH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQ----LYGEFDSA--SHEWR-DGI 1421 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~e----L~G~~~~~--t~eW~-DG~ 1421 (1513)
..++++|+||||+|||++++.+++.+....... .....+..+|+...+ ..+ ++..+... ..++. +.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 117 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSL-----GVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEV 117 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHH-----TCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhcc-----CCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 346899999999999999999998875432110 012455667765544 222 22222111 11221 122
Q ss_pred HHHHHHHhhccCCCCceEEEEcCC--CChH--HHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC---CCCCcch
Q psy4730 1422 LAKTFREMAVSTTPDRKWIMFDGP--IDAV--WIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL---EFASPAT 1494 (1513)
Q Consensus 1422 l~~~lR~~~~~~~~~~~WivfDG~--~d~~--wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l---~~asPat 1494 (1513)
+..+.... . .......|++|.. +... .-+.|..+++....+ +.+.++.+|+-+.+. ....|+.
T Consensus 118 ~~~l~~~l-~-~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~--------~~~~~~~~I~~t~~~~~~~~l~~~l 187 (387)
T 2v1u_A 118 YERLVKRL-S-RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL--------GDRVWVSLVGITNSLGFVENLEPRV 187 (387)
T ss_dssp HHHHHHHH-T-TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-------------CEEEEECSCSTTSSSSCHHH
T ss_pred HHHHHHHH-h-ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc--------CCCceEEEEEEECCCchHhhhCHHH
Confidence 33332222 1 1334678999952 2111 234455554321111 114577788877665 6778999
Q ss_pred hhcc--EEEEeeC
Q psy4730 1495 VSRV--GMIYFEL 1505 (1513)
Q Consensus 1495 vsRc--g~v~~~~ 1505 (1513)
.+|| ..+.+.|
T Consensus 188 ~~r~~~~~i~l~~ 200 (387)
T 2v1u_A 188 KSSLGEVELVFPP 200 (387)
T ss_dssp HTTTTSEECCBCC
T ss_pred HhcCCCeEEeeCC
Confidence 9999 4566654
No 119
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.46 E-value=0.0036 Score=71.21 Aligned_cols=86 Identities=13% Similarity=0.198 Sum_probs=51.5
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
..++++|+||||+|||++.+.+++.++ ..+..++.. ++++|.... -..+.+..++..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~--------------~~~~~i~~~----~~~~g~~~~----~~~~~~~~~~~~~ 120 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN--------------FPFIKICSP----DKMIGFSET----AKCQAMKKIFDDA 120 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT--------------CSEEEEECG----GGCTTCCHH----HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC--------------CCEEEEeCH----HHhcCCchH----HHHHHHHHHHHHH
Confidence 346999999999999999999998753 233444432 356664210 1112223333333
Q ss_pred hccCCCCceEEEEcCC------------CChHHHHhhhcccCC
Q psy4730 1430 AVSTTPDRKWIMFDGP------------IDAVWIENMNTVLDD 1460 (1513)
Q Consensus 1430 ~~~~~~~~~WivfDG~------------~d~~wiE~LNsvLDd 1460 (1513)
. .....-|++|.- ....+++.|..+++.
T Consensus 121 ~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~ 160 (272)
T 1d2n_A 121 Y---KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK 160 (272)
T ss_dssp H---TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTC
T ss_pred H---hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcC
Confidence 2 133578999951 245577777777653
No 120
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.42 E-value=0.0073 Score=69.89 Aligned_cols=119 Identities=20% Similarity=0.358 Sum_probs=67.5
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
..+||+|+||||||||++.+.++..++ .....+++..+ ...++|.. . ..+..++..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~--------------~~~i~v~~~~l-~~~~~g~~----~----~~~~~~f~~a 104 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQ--------------ANFISIKGPEL-LTMWFGES----E----ANVREIFDKA 104 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT--------------CEEEEECHHHH-HHHHHTTC----T----THHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhC--------------CCEEEEEhHHH-HhhhcCch----H----HHHHHHHHHH
Confidence 456899999999999999999987653 23344443322 12334422 1 1223333333
Q ss_pred hccCCCCceEEEEcCCCChHH-----------------HHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCc
Q psy4730 1430 AVSTTPDRKWIMFDGPIDAVW-----------------IENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 1492 (1513)
Q Consensus 1430 ~~~~~~~~~WivfDG~~d~~w-----------------iE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asP 1492 (1513)
.. ....-+++|. +|... +..|-+.|| | +.-+.++.+|.-|.......|
T Consensus 105 ~~---~~p~il~iDE-id~l~~~~~~~~~~~~~~~~~~~~~lL~~l~---------~--~~~~~~v~vi~atn~~~~ld~ 169 (301)
T 3cf0_A 105 RQ---AAPCVLFFDE-LDSIAKARGGNIGDGGGAADRVINQILTEMD---------G--MSTKKNVFIIGATNRPDIIDP 169 (301)
T ss_dssp HH---TCSEEEEECS-TTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH---------S--SCTTSSEEEEEEESCGGGSCG
T ss_pred Hh---cCCeEEEEEC-hHHHhhccCCCcCCcchHHHHHHHHHHHHhh---------c--ccCCCCEEEEEecCCccccCh
Confidence 21 1246888885 33221 112222222 1 112356788888877777889
Q ss_pred chhh--ccE-EEEeeCC
Q psy4730 1493 ATVS--RVG-MIYFELK 1506 (1513)
Q Consensus 1493 atvs--Rcg-~v~~~~~ 1506 (1513)
|.++ |+. .|+++.-
T Consensus 170 al~r~gRf~~~i~i~~p 186 (301)
T 3cf0_A 170 AILRPGRLDQLIYIPLP 186 (301)
T ss_dssp GGGSTTSSCEEEECCCC
T ss_pred HHhcCCccceEEecCCc
Confidence 8888 885 5666553
No 121
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.40 E-value=0.0016 Score=85.72 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=37.6
Q ss_pred cceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
.++.+++|+|++. .|+|.++| ||. .++++.|+.+....|+..++.
T Consensus 615 ~~v~vI~tTN~~~-~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 615 KNVFIIGATNRPD-IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp -CCBCCCCCBSCG-GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred CCeEEEEecCCcc-cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 4688899999874 38999999 996 799999999999999887654
No 122
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.38 E-value=0.053 Score=64.99 Aligned_cols=117 Identities=18% Similarity=0.226 Sum_probs=68.8
Q ss_pred HHhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceEeecC
Q psy4730 889 MILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNIISID 961 (1513)
Q Consensus 889 ~~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~~~~~ 961 (1513)
+|+|++. ||. ....-|-++++.|.+...+.. ...-.|+++|+|+|.+ .....+.|+.|++++.+.
T Consensus 235 lfldei~~l~~-------~~q~~Ll~~l~~~~~~~~g~~-~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~ 306 (387)
T 1ny5_A 235 LFLDEIGELSL-------EAQAKLLRVIESGKFYRLGGR-KEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIE 306 (387)
T ss_dssp EEEESGGGCCH-------HHHHHHHHHHHHSEECCBTCC-SBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEE
T ss_pred EEEcChhhCCH-------HHHHHHHHHHhcCcEEeCCCC-ceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeec
Confidence 3457776 432 234445556666666544432 2334589999999986 456778888888776655
Q ss_pred CCCh----HHHHHHHHHHhhhhhhc------cchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccccchhhHHHHHh
Q psy4730 962 SFNE----ATLSKIFTSVLDWHFSK------GFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIM 1031 (1513)
Q Consensus 962 ~~~~----~~l~~i~~~~l~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hy~fnlrd~~~~~~ 1031 (1513)
-|+- +++..+...++..+-.+ ++.++..... ...+|--|.|.|.++++
T Consensus 307 lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l----------------------~~~~wpGNvreL~~~i~ 364 (387)
T 1ny5_A 307 IPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELL----------------------LSYPWYGNVRELKNVIE 364 (387)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHH----------------------HHSCCTTHHHHHHHHHH
T ss_pred CCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH----------------------HhCCCCcHHHHHHHHHH
Confidence 5543 57777776666543211 2322221111 12356679999999987
Q ss_pred hhcc
Q psy4730 1032 GLTQ 1035 (1513)
Q Consensus 1032 g~~~ 1035 (1513)
-...
T Consensus 365 ~~~~ 368 (387)
T 1ny5_A 365 RAVL 368 (387)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 123
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.35 E-value=0.0024 Score=74.69 Aligned_cols=119 Identities=14% Similarity=0.167 Sum_probs=67.6
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
.+||+|+||||||||++.+.++..++ ..+..+++ .++++.+-.. ..+.+..+++.+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~--------------~~~~~v~~-----~~l~~~~~g~----~~~~~~~~f~~a~ 107 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN--------------STFFSVSS-----SDLVSKWMGE----SEKLVKQLFAMAR 107 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT--------------CEEEEEEH-----HHHHTTTGGG----HHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC--------------CCEEEEch-----HHHhhcccch----HHHHHHHHHHHHH
Confidence 46899999999999999999987754 23444544 3444432211 1222333333332
Q ss_pred ccCCCCceEEEEcCCCCh--------------HHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh
Q psy4730 1431 VSTTPDRKWIMFDGPIDA--------------VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS 1496 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG~~d~--------------~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs 1496 (1513)
. ....-|++|. +|. ...+.+-..+|.-. .-+.++.+|.-|.......||..+
T Consensus 108 ~---~~~~vl~iDE-id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~atn~~~~ld~al~~ 173 (322)
T 3eie_A 108 E---NKPSIIFIDQ-VDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPWQLDSAIRR 173 (322)
T ss_dssp H---TSSEEEEEEC-GGGGSCC------CCTHHHHHHHHHHHGGGG----------TSCCCEEEEEEESCGGGSCHHHHH
T ss_pred h---cCCeEEEech-hhhhhccCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEEEEecCChhhCCHHHHc
Confidence 1 2346788884 111 12222222332110 123456777777777788999999
Q ss_pred ccE-EEEeeCC
Q psy4730 1497 RVG-MIYFELK 1506 (1513)
Q Consensus 1497 Rcg-~v~~~~~ 1506 (1513)
||. .|+++.-
T Consensus 174 Rf~~~i~~~~p 184 (322)
T 3eie_A 174 RFERRIYIPLP 184 (322)
T ss_dssp HCCEEEECCCC
T ss_pred ccCeEEEeCCC
Confidence 995 5566543
No 124
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.33 E-value=0.012 Score=66.16 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=34.1
Q ss_pred ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
.+..+|+++.|. .+++.++| ||. .+.++.|+.++...|+.....
T Consensus 154 ~~i~~a~t~~p~-~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 200 (254)
T 1ixz_A 154 AIVVMAATNRPD-ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 200 (254)
T ss_dssp CEEEEEEESCGG-GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT
T ss_pred CEEEEEccCCch-hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc
Confidence 355667777774 48999998 664 589999999999999876554
No 125
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.26 E-value=0.016 Score=76.04 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=36.7
Q ss_pred cceEEEEeecCCCCCCChhhhc--cc-eEeecCCCChHHHHHHHHHHhhh
Q psy4730 932 VDIIYITAMIPTMNTITGRLLR--HM-NIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 932 ~~~~~~~a~~~~~~~~~~r~~~--~f-~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.++.+++|+|++ ..+++.+.| || ..+.++.|+.+....|+..+...
T Consensus 339 ~~v~vI~atn~~-~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 339 AHVIVMAATNRP-NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp SCCEEEEECSCT-TTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred ccEEEecccCCc-hhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 467888999987 357788877 78 55899999999999998876554
No 126
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.25 E-value=0.017 Score=68.83 Aligned_cols=132 Identities=13% Similarity=0.095 Sum_probs=75.5
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC-hhhcc-------ccccCCCCCCccCHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLY-------GEFDSASHEWRDGILAK 1424 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t-~~eL~-------G~~~~~t~eW~DG~l~~ 1424 (1513)
.++|+||+|+||||+++.+++.+..-. ...+..+|+.... ..+++ |.-.+. ..+..+-+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~----------~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~ 114 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKT----------TARFVYINGFIYRNFTAIIGEIARSLNIPFPR-RGLSRDEFLA 114 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSC----------CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS-SCCCHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhc----------CeeEEEEeCccCCCHHHHHHHHHHHhCccCCC-CCCCHHHHHH
Confidence 799999999999999999987764210 1345566644333 22222 221111 1122111222
Q ss_pred HHHHhhccCCCCceEEEEcC--CCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC---CCCCcchhhccE
Q psy4730 1425 TFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL---EFASPATVSRVG 1499 (1513)
Q Consensus 1425 ~lR~~~~~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l---~~asPatvsRcg 1499 (1513)
.+.+.... ......|++|. .+|+..++.|-.++++-+ . + -..++.+|+-+.+. ....|+..+||+
T Consensus 115 ~l~~~l~~-~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~-----~-~---~~~~~~iI~~~~~~~~~~~l~~~~~~r~~ 184 (389)
T 1fnn_A 115 LLVEHLRE-RDLYMFLVLDDAFNLAPDILSTFIRLGQEAD-----K-L---GAFRIALVIVGHNDAVLNNLDPSTRGIMG 184 (389)
T ss_dssp HHHHHHHH-TTCCEEEEEETGGGSCHHHHHHHHHHTTCHH-----H-H---SSCCEEEEEEESSTHHHHTSCHHHHHHHT
T ss_pred HHHHHHhh-cCCeEEEEEECccccchHHHHHHHHHHHhCC-----C-C---CcCCEEEEEEECCchHHHHhCHHhhhcCC
Confidence 22222111 23457999995 357777888877775321 0 0 01356777776665 567788889998
Q ss_pred --EEEeeC
Q psy4730 1500 --MIYFEL 1505 (1513)
Q Consensus 1500 --~v~~~~ 1505 (1513)
.+.+.|
T Consensus 185 ~~~i~~~p 192 (389)
T 1fnn_A 185 KYVIRFSP 192 (389)
T ss_dssp TCEEECCC
T ss_pred CceEEeCC
Confidence 577765
No 127
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.24 E-value=0.032 Score=65.45 Aligned_cols=43 Identities=7% Similarity=0.048 Sum_probs=34.8
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVL 976 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l 976 (1513)
++.+|.+++.+ ..+.|.+.+|+..+.+.+|+.+++..+.....
T Consensus 138 ~~~~Il~t~~~-~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 138 ETWFFLATREP-ERLLATLRSRCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp TEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred CeEEEEEeCCh-HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc
Confidence 45667666654 56899999999999999999999888777653
No 128
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.24 E-value=0.01 Score=70.14 Aligned_cols=94 Identities=16% Similarity=0.081 Sum_probs=51.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
.-|.|+||+||||||++++++..+..-.+. ..+..=+|-......--+.+....-....--+..+++.+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~---------~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYH---------HILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCC---------EEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCc---------EEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhh
Confidence 358899999999999999998877642111 12233344333322111111100000000112334444422
Q ss_pred cCCCCceEEEEcCCCChHHHHhhhcc
Q psy4730 1432 STTPDRKWIMFDGPIDAVWIENMNTV 1457 (1513)
Q Consensus 1432 ~~~~~~~WivfDG~~d~~wiE~LNsv 1457 (1513)
..+.+|++|.|-|++-++.+-.+
T Consensus 195 ---~~PdvillDEp~d~e~~~~~~~~ 217 (356)
T 3jvv_A 195 ---EDPDIILVGEMRDLETIRLALTA 217 (356)
T ss_dssp ---SCCSEEEESCCCSHHHHHHHHHH
T ss_pred ---hCcCEEecCCCCCHHHHHHHHHH
Confidence 34689999999998877665444
No 129
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.15 E-value=0.00076 Score=87.39 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=32.0
Q ss_pred ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
++.++||+|.| ..|+|.++| ||- .++++.|+.++...|+..+++.
T Consensus 616 ~V~vi~aTN~p-~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~ 663 (806)
T 3cf2_A 616 NVFIIGATNRP-DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp SEEEECC-CCS-SSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSC
T ss_pred CEEEEEeCCCc-hhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcC
Confidence 57889999987 469999999 896 4999999999999988876543
No 130
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.12 E-value=0.007 Score=68.52 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.3
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.+||+|+||||||||++.+.+++.++
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 56899999999999999999988754
No 131
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.05 E-value=0.012 Score=68.12 Aligned_cols=119 Identities=14% Similarity=0.201 Sum_probs=72.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCH--HHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI--LAKTFRE 1428 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~--l~~~lR~ 1428 (1513)
.|..++.||+|+||||+.+.+++....... ....+..++|..- .-|+ +-.++..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~--------~~~d~~~l~~~~~----------------~~~id~ir~li~~ 73 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPP--------KASDVLEIDPEGE----------------NIGIDDIRTIKDF 73 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCC--------CTTTEEEECCSSS----------------CBCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhc--------cCCCEEEEcCCcC----------------CCCHHHHHHHHHH
Confidence 368999999999999999999986432110 1124455665410 0121 2233333
Q ss_pred hhccC-CCCceEEEEcCCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhhccEEEEeeCC
Q psy4730 1429 MAVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 1506 (1513)
Q Consensus 1429 ~~~~~-~~~~~WivfDG~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvsRcg~v~~~~~ 1506 (1513)
+...+ ...++.+|+|. +|..=-+..|.+| |.|- ..|+++.+||-+++....-|+-.|| ++.|.+-
T Consensus 74 ~~~~p~~~~~kvviIde-ad~lt~~a~naLL---k~LE-------ep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l 139 (305)
T 2gno_A 74 LNYSPELYTRKYVIVHD-CERMTQQAANAFL---KALE-------EPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVN 139 (305)
T ss_dssp HTSCCSSSSSEEEEETT-GGGBCHHHHHHTH---HHHH-------SCCTTEEEEEEESCGGGSCHHHHTT--SEEEECC
T ss_pred HhhccccCCceEEEecc-HHHhCHHHHHHHH---HHHh-------CCCCCeEEEEEECChHhChHHHHce--eEeCCCC
Confidence 33333 24578999996 1221123344443 1110 1267899999999999999999999 7877653
No 132
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.02 E-value=0.011 Score=65.30 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=24.8
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
..++++|+||+|||||++.+.+++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999988764
No 133
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.98 E-value=0.033 Score=66.31 Aligned_cols=136 Identities=19% Similarity=0.236 Sum_probs=92.4
Q ss_pred HHHHHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC---CCC
Q psy4730 1344 VYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA---SHE 1416 (1513)
Q Consensus 1344 L~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~---t~e 1416 (1513)
+........+|++.|++|+||+++.+.+.....+ ...+..+|+.+++ -++|||+-.-. ...
T Consensus 145 ~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r------------~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~ 212 (368)
T 3dzd_A 145 IPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR------------KGAFVDLNCASIPQELAESELFGHEKGAFTGALT 212 (368)
T ss_dssp HHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC------------CSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC
T ss_pred hhhhhccchhheEEeCCCchHHHHHHHHHHhccc------------cCCcEEEEcccCChHHHHHHhcCccccccCCccc
Confidence 3444556779999999999999999888765432 1126788888877 67899964311 124
Q ss_pred CccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec-CCC-----
Q psy4730 1417 WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE-NLE----- 1488 (1513)
Q Consensus 1417 W~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~-~l~----- 1488 (1513)
+..|.|..+ + .-=+++| |.+++..-..|-.+|++...-.+.+.. ..+-++|+|+.|. ||.
T Consensus 213 ~~~g~~~~a--~--------~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~rii~at~~~l~~~v~~ 280 (368)
T 3dzd_A 213 RKKGKLELA--D--------QGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQ--KIEVDIRVISATNKNLEEEIKK 280 (368)
T ss_dssp CEECHHHHT--T--------TSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCC--BEECCCEEEEEESSCHHHHHHT
T ss_pred ccCChHhhc--C--------CCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCc--ceeeeeEEEEecCCCHHHHHHc
Confidence 677777532 1 1348889 788999999999999887665554443 3456799999885 332
Q ss_pred -CCCcchhhccEEEEe
Q psy4730 1489 -FASPATVSRVGMIYF 1503 (1513)
Q Consensus 1489 -~asPatvsRcg~v~~ 1503 (1513)
.--+....|+..+.+
T Consensus 281 g~fr~dL~~rl~~~~i 296 (368)
T 3dzd_A 281 GNFREDLYYRLSVFQI 296 (368)
T ss_dssp TSSCHHHHHHHTSEEE
T ss_pred CCccHHHHHHhCCeEE
Confidence 223456677766543
No 134
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.92 E-value=0.018 Score=65.72 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=34.3
Q ss_pred ceEEEEeecCCCCCCChhhhc--cce-EeecCCCChHHHHHHHHHHhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMN-IISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~-~~~~~~~~~~~l~~i~~~~l~ 977 (1513)
.+..+|+++.|. .+++.++| ||. .+.++.|+.++...|+..++.
T Consensus 178 ~~i~~a~t~~p~-~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 224 (278)
T 1iy2_A 178 AIVVMAATNRPD-ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 224 (278)
T ss_dssp CEEEEEEESCTT-SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred CEEEEEecCCch-hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc
Confidence 356678888774 49999997 664 589999999999999886543
No 135
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.92 E-value=0.0043 Score=63.35 Aligned_cols=90 Identities=8% Similarity=0.059 Sum_probs=57.6
Q ss_pred HHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHH
Q psy4730 1347 MILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTF 1426 (1513)
Q Consensus 1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~l 1426 (1513)
+.....+|+|.||||||||++.+.++.... .+..+|+..++.. |..|++
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA~~i~~~~~---------------~~~~~~~~~~~~~------------~~~~~~---- 71 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVARYFHKNGT---------------PWVSPARVEYLID------------MPMELL---- 71 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHHGGGCCTTS---------------CEECCSSTTHHHH------------CHHHHH----
T ss_pred HhCCCCcEEEECCCCccHHHHHHHHHHhCC---------------CeEEechhhCChH------------hhhhHH----
Confidence 345678999999999999999888764321 2344555443211 122332
Q ss_pred HHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730 1427 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus 1427 R~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
... ...-+++| +.+++.....|-.+|++.. +.++++|+-+.
T Consensus 72 ~~a------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~------------~~~~~iI~~tn 114 (143)
T 3co5_A 72 QKA------EGGVLYVGDIAQYSRNIQTGITFIIGKAE------------RCRVRVIASCS 114 (143)
T ss_dssp HHT------TTSEEEEEECTTCCHHHHHHHHHHHHHHT------------TTTCEEEEEEE
T ss_pred HhC------CCCeEEEeChHHCCHHHHHHHHHHHHhCC------------CCCEEEEEecC
Confidence 222 12568899 6677777777877777532 56788888764
No 136
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.029 Score=70.00 Aligned_cols=123 Identities=17% Similarity=0.068 Sum_probs=65.5
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhcc----ccccCCCCCCccCHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLY----GEFDSASHEWRDGILAKTF 1426 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~----G~~~~~t~eW~DG~l~~~l 1426 (1513)
.++++|.||||+|||++.+.+++.++ ..+..+|+.......++ +..... .=..|++..+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~--------------~~~i~in~s~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 140 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG--------------YDILEQNASDVRSKTLLNAGVKNALDN--MSVVGYFKHNE 140 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT--------------CEEEEECTTSCCCHHHHHHTGGGGTTB--CCSTTTTTC--
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC--------------CCEEEEeCCCcchHHHHHHHHHHHhcc--ccHHHHHhhhh
Confidence 47999999999999999999998763 34566777665433221 111000 00112221111
Q ss_pred HHhhccCCCCceEEEEcCC--C---ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCC-CCCcchhhccEE
Q psy4730 1427 REMAVSTTPDRKWIMFDGP--I---DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-FASPATVSRVGM 1500 (1513)
Q Consensus 1427 R~~~~~~~~~~~WivfDG~--~---d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~-~asPatvsRcg~ 1500 (1513)
. .........-|++|.- + +..-++.|+.+++.. +..+++=+.+.. ..-|+..+||..
T Consensus 141 ~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~---------------~~~iIli~~~~~~~~l~~l~~r~~~ 203 (516)
T 1sxj_A 141 E--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT---------------STPLILICNERNLPKMRPFDRVCLD 203 (516)
T ss_dssp ----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC---------------SSCEEEEESCTTSSTTGGGTTTSEE
T ss_pred h--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc---------------CCCEEEEEcCCCCccchhhHhceEE
Confidence 0 0011245578899941 1 222345566666432 223444443332 223556788988
Q ss_pred EEeeCC
Q psy4730 1501 IYFELK 1506 (1513)
Q Consensus 1501 v~~~~~ 1506 (1513)
|.|.+-
T Consensus 204 i~f~~~ 209 (516)
T 1sxj_A 204 IQFRRP 209 (516)
T ss_dssp EECCCC
T ss_pred EEeCCC
Confidence 887764
No 137
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.83 E-value=0.0052 Score=65.84 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.6
Q ss_pred HHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1348 ILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
+....-|+|+|++||||||+.+.|++.++
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33445799999999999999999998775
No 138
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.78 E-value=0.0053 Score=75.82 Aligned_cols=119 Identities=20% Similarity=0.273 Sum_probs=70.0
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 1429 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~ 1429 (1513)
...||+|+||||||||++.+.++..++ ..+..+|+..+. .+++|.. .|.+..++..+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~--------------~~fv~vn~~~l~-~~~~g~~--------~~~~~~~f~~A 293 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETG--------------AFFFLINGPEIM-SKLAGES--------ESNLRKAFEEA 293 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCS--------------SEEEEEEHHHHH-TSCTTHH--------HHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhC--------------CCEEEEEchHhh-hhhcchh--------HHHHHHHHHHH
Confidence 456899999999999999999976642 345566654332 2333322 22333444433
Q ss_pred hccCCCCceEEEEcCC-------------CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh
Q psy4730 1430 AVSTTPDRKWIMFDGP-------------IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS 1496 (1513)
Q Consensus 1430 ~~~~~~~~~WivfDG~-------------~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs 1496 (1513)
.. ....-|++|.- ........|-.+||. +..+.++.+|.-|.......|+..+
T Consensus 294 ~~---~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~-----------~~~~~~v~vIaaTn~~~~Ld~al~r 359 (489)
T 3hu3_A 294 EK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG-----------LKQRAHVIVMAATNRPNSIDPALRR 359 (489)
T ss_dssp HH---TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHH-----------SCTTSCEEEEEEESCGGGBCGGGGS
T ss_pred Hh---cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhc-----------cccCCceEEEEecCCccccCHHHhC
Confidence 22 12357888841 111334445555542 1234567788888777777899888
Q ss_pred --ccEE-EEeeC
Q psy4730 1497 --RVGM-IYFEL 1505 (1513)
Q Consensus 1497 --Rcg~-v~~~~ 1505 (1513)
|+.. |++..
T Consensus 360 ~gRf~~~i~i~~ 371 (489)
T 3hu3_A 360 FGRFDREVDIGI 371 (489)
T ss_dssp TTSSCEEEECCC
T ss_pred CCcCceEEEeCC
Confidence 6654 55544
No 139
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.78 E-value=0.027 Score=66.06 Aligned_cols=121 Identities=17% Similarity=0.257 Sum_probs=66.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhhc
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 1431 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~~ 1431 (1513)
+.++|+|||||||||+.++++..++. .+...+ |... ...+-+..+++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~--------------~~~~~s----------g~~~-----~~~~~l~~~~~~~-- 100 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQT--------------NIHVTS----------GPVL-----VKQGDMAAILTSL-- 100 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTC--------------CEEEEE----------TTTC-----CSHHHHHHHHHHC--
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC--------------CEEEEe----------chHh-----cCHHHHHHHHHHc--
Confidence 57999999999999999999988742 111111 1110 0111222222221
Q ss_pred cCCCCceEEEEcC--CCChHHHHhhhcccCCCC-ceeecCC---Ceee-cCCCCeEEEeecCCCCCCcchhhccEEE-Ee
Q psy4730 1432 STTPDRKWIMFDG--PIDAVWIENMNTVLDDNK-KLCLING---EIIK-MSNTMNLIFECENLEFASPATVSRVGMI-YF 1503 (1513)
Q Consensus 1432 ~~~~~~~WivfDG--~~d~~wiE~LNsvLDdn~-~L~L~nG---e~i~-~~~~~~~iFE~~~l~~asPatvsRcg~v-~~ 1503 (1513)
.....+++|- .+.+..-|.|-..+.+.+ .+.+..| .++. ..+.+.++..+......||+..+||+++ .+
T Consensus 101 ---~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~L 177 (334)
T 1in4_A 101 ---ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILEL 177 (334)
T ss_dssp ---CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEEC
T ss_pred ---cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeC
Confidence 1235666663 234455676655554432 1112222 1222 2245677777888889999999999864 56
Q ss_pred eCC
Q psy4730 1504 ELK 1506 (1513)
Q Consensus 1504 ~~~ 1506 (1513)
++-
T Consensus 178 d~~ 180 (334)
T 1in4_A 178 DFY 180 (334)
T ss_dssp CCC
T ss_pred CCC
Confidence 664
No 140
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.75 E-value=0.0054 Score=69.41 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=23.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|+|+|+|||||||+.+.|++.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 35899999999999999999988764
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.65 E-value=0.0054 Score=65.04 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=23.7
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..+++|+||+||||||+.+.++..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999988775
No 142
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.58 E-value=0.015 Score=66.23 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=35.5
Q ss_pred ceEEEEeecCCCCCCChhhhc--cceE-eecCCCChHHHHHHHHHHhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLR--HMNI-ISIDSFNEATLSKIFTSVLD 977 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~--~f~~-~~~~~~~~~~l~~i~~~~l~ 977 (1513)
.+..+|++|.|. .++|.++| ||.. ++++.|+.++...|+..++.
T Consensus 146 ~~i~ia~tn~p~-~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPD-IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGG-GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChh-hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 345667777764 47999998 8865 89999999999999998764
No 143
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.50 E-value=0.017 Score=70.74 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=66.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCHHHHHHHHhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 1430 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~l~~~lR~~~ 1430 (1513)
..||+|+||||||||++.+.++...+ +.+..+++..+. ..+.|.- .. -+..++.++.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~--------------~~f~~is~~~~~-~~~~g~~----~~----~~r~lf~~A~ 105 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEAN--------------VPFFHISGSDFV-ELFVGVG----AA----RVRDLFAQAK 105 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHT--------------CCEEEEEGGGTT-TCCTTHH----HH----HHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC--------------CCeeeCCHHHHH-HHHhccc----HH----HHHHHHHHHH
Confidence 46899999999999999999987553 334555544332 1122210 00 0112222221
Q ss_pred ccCCCCceEEEEcCC-------------CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCCCCCCcchhh-
Q psy4730 1431 VSTTPDRKWIMFDGP-------------IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS- 1496 (1513)
Q Consensus 1431 ~~~~~~~~WivfDG~-------------~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l~~asPatvs- 1496 (1513)
. ..+..|++|.. .++...+.+|.+|.. .+| +.-+.++.+|.-|.....+-||.+.
T Consensus 106 ~---~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~------ld~--~~~~~~viVIaaTn~~~~Ld~allR~ 174 (476)
T 2ce7_A 106 A---HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE------MDG--FDSKEGIIVMAATNRPDILDPALLRP 174 (476)
T ss_dssp H---TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHH------HHH--SCGGGTEEEEEEESCGGGSCGGGGST
T ss_pred h---cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHH------Hhc--cCCCCCEEEEEecCChhhhchhhccc
Confidence 1 23578899953 133444556655521 000 1113466777777777777787764
Q ss_pred -ccE-EEEeeCCC
Q psy4730 1497 -RVG-MIYFELKC 1507 (1513)
Q Consensus 1497 -Rcg-~v~~~~~~ 1507 (1513)
|+. .|++++.+
T Consensus 175 gRFd~~i~i~~Pd 187 (476)
T 2ce7_A 175 GRFDKKIVVDPPD 187 (476)
T ss_dssp TSSCEEEECCCCC
T ss_pred CcceeEeecCCCC
Confidence 655 55565443
No 144
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.49 E-value=0.013 Score=63.59 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=23.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|+|.|++||||||+.+.|++.++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 35899999999999999999998864
No 145
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.48 E-value=0.053 Score=62.72 Aligned_cols=41 Identities=0% Similarity=-0.027 Sum_probs=32.7
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVL 976 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l 976 (1513)
++.||.+++.+ ..+.|-+.+| ++.+.+|+.+++.......+
T Consensus 112 ~t~fIl~t~~~-~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 112 YAVIVLNTRRW-HYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp TEEEEEEESCG-GGSCHHHHTT--SEEEECCCCHHHHHHHHHHH
T ss_pred CeEEEEEECCh-HhChHHHHce--eEeCCCCCHHHHHHHHHHHh
Confidence 56677776544 4788999999 99999999999988877764
No 146
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.47 E-value=0.0057 Score=71.51 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=23.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.++++|+||||+||||+.+.++..+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 368999999999999999999987753
No 147
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.46 E-value=0.22 Score=59.18 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=52.2
Q ss_pred HhhccC-CCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC------CCCCChhhhccceEee--c
Q psy4730 890 ILDDLN-MPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT------MNTITGRLLRHMNIIS--I 960 (1513)
Q Consensus 890 ~~dd~n-~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~------~~~~~~r~~~~f~~~~--~ 960 (1513)
|+|++. ||. ....-|-++++.|.+...+.... .-.|+++|+|++.+ .....+.|+.|.+++. +
T Consensus 227 fldei~~l~~-------~~Q~~Ll~~l~~~~~~~~g~~~~-~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~l 298 (368)
T 3dzd_A 227 FLDEVGELDQ-------RVQAKLLRVLETGSFTRLGGNQK-IEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYL 298 (368)
T ss_dssp EEETGGGSCH-------HHHHHHHHHHHHSEECCBTCCCB-EECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEEC
T ss_pred EecChhhCCH-------HHHHHHHHHHHhCCcccCCCCcc-eeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeC
Confidence 457766 433 23455556667777765554322 34599999999986 4567778888888755 6
Q ss_pred CCCCh--HHHHHHHHHHhhh
Q psy4730 961 DSFNE--ATLSKIFTSVLDW 978 (1513)
Q Consensus 961 ~~~~~--~~l~~i~~~~l~~ 978 (1513)
++... +++..+...++..
T Consensus 299 PpLreR~~Di~~l~~~~l~~ 318 (368)
T 3dzd_A 299 PPLRERGKDVILLAEYFLKK 318 (368)
T ss_dssp CCGGGSTTHHHHHHHHHHHH
T ss_pred CChhhchhhHHHHHHHHHHH
Confidence 66555 5777777666554
No 148
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.43 E-value=0.053 Score=65.18 Aligned_cols=46 Identities=7% Similarity=0.211 Sum_probs=31.1
Q ss_pred ceEEEEeecCC--CCCCC---hhhhccceE-eecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPT--MNTIT---GRLLRHMNI-ISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~--~~~~~---~r~~~~f~~-~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
.+.++++.+.+ ...+. +++.++|.. +.+++++.+++..++...+..
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~ 230 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAEL 230 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHh
Confidence 56677777543 22344 555555433 899999999999999876654
No 149
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.34 E-value=0.0067 Score=66.50 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.3
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|+|||||||||..+.|++.++
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4678899999999999999998875
No 150
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.31 E-value=0.027 Score=67.55 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=81.6
Q ss_pred HHHhcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC----hhhccccccCC---CCCCcc
Q psy4730 1347 MILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA---SHEWRD 1419 (1513)
Q Consensus 1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t----~~eL~G~~~~~---t~eW~D 1419 (1513)
......+|++.|++|+|||++.+.+.....+- ...+..+|+.+++ -++|||+-.-. ...+..
T Consensus 156 ~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~-----------~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~ 224 (387)
T 1ny5_A 156 ISCAECPVLITGESGVGKEVVARLIHKLSDRS-----------KEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKE 224 (387)
T ss_dssp HTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT-----------TSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBC
T ss_pred hcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC-----------CCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccC
Confidence 34556799999999999999988887653321 1356789999988 56899963211 112566
Q ss_pred CHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeec
Q psy4730 1420 GILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 1485 (1513)
Q Consensus 1420 G~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~ 1485 (1513)
|.|..+ ..-.+++| |.+++..-..|-.+|++...- +.|..-..+.++|+|+-|.
T Consensus 225 g~~~~a----------~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~ 280 (387)
T 1ny5_A 225 GFFELA----------DGGTLFLDEIGELSLEAQAKLLRVIESGKFY--RLGGRKEIEVNVRILAATN 280 (387)
T ss_dssp CHHHHT----------TTSEEEEESGGGCCHHHHHHHHHHHHHSEEC--CBTCCSBEECCCEEEEEES
T ss_pred CceeeC----------CCcEEEEcChhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCC
Confidence 766532 12588899 788999999999999876543 3455555667899998774
No 151
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.28 E-value=0.083 Score=62.18 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=36.0
Q ss_pred ceEEEEeecCCCCCCChhhhccceEeecCCCChHHHHHHHHHHhhh
Q psy4730 933 DIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLDW 978 (1513)
Q Consensus 933 ~~~~~~a~~~~~~~~~~r~~~~f~~~~~~~~~~~~l~~i~~~~l~~ 978 (1513)
+..++.+++.+. .+.+.+.+|+..+.+.+|+.+++..+...++..
T Consensus 164 ~~~~Il~t~~~~-~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 164 NIRLIMVCDSMS-PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp TEEEEEEESCSC-SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHH-HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH
Confidence 456666666543 478889999999999999999999998887653
No 152
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.011 Score=71.41 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=26.8
Q ss_pred HHHHHH--hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1344 VYEMIL--VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1344 L~~~~~--~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
+|.... ..+||+|+||||||||++.+++|..++
T Consensus 197 ~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 197 LYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp HHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 444433 346999999999999999999998875
No 153
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.22 E-value=0.011 Score=65.16 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=21.7
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|.|++||||||+.+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998875
No 154
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.012 Score=71.06 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.7
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.+||+|+||||||||++.+++|..++
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 46999999999999999999998765
No 155
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.011 Score=71.38 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=27.3
Q ss_pred HHHHHHHh--cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1343 QVYEMILV--RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1343 qL~~~~~~--~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
++|..... ..||+|+||||||||++.+++|..++
T Consensus 205 ~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 205 EIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34544433 46999999999999999999998775
No 156
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.09 E-value=0.029 Score=63.43 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=23.8
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
...-+.|+||+||||||+++.|+..+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 3446899999999999999999987753
No 157
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.012 Score=70.00 Aligned_cols=130 Identities=20% Similarity=0.334 Sum_probs=71.1
Q ss_pred HHHHHHHh--cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccC
Q psy4730 1343 QVYEMILV--RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG 1420 (1513)
Q Consensus 1343 qL~~~~~~--~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG 1420 (1513)
++|+.... ..||+|+||||||||++.+++|...+ ..+..+++. ++++.|- |
T Consensus 172 e~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--------------~~f~~v~~s-----~l~sk~v--------G 224 (405)
T 4b4t_J 172 ELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--------------CKFIRVSGA-----ELVQKYI--------G 224 (405)
T ss_dssp HHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--------------CEEEEEEGG-----GGSCSST--------T
T ss_pred HHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--------------CCceEEEhH-----Hhhcccc--------c
Confidence 35555444 46999999999999999999998765 345555543 3333321 2
Q ss_pred HHHHHHHHhhcc-CCCCceEEEEcC-----CC--------ChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecC
Q psy4730 1421 ILAKTFREMAVS-TTPDRKWIMFDG-----PI--------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN 1486 (1513)
Q Consensus 1421 ~l~~~lR~~~~~-~~~~~~WivfDG-----~~--------d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~ 1486 (1513)
--.+.+|+.... ....+.-|.||. +- +...--.+|.+|. --+| +.-.+++.+|..|..
T Consensus 225 ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~------~lDg--~~~~~~V~vIaATNr 296 (405)
T 4b4t_J 225 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN------QLDG--FETSKNIKIIMATNR 296 (405)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHH------HHHT--TTCCCCEEEEEEESC
T ss_pred hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHH------hhhc--cCCCCCeEEEeccCC
Confidence 224445543211 112345566672 10 1111122344431 1111 111345677888888
Q ss_pred CCCCCcchhh--ccE-EEEeeCCC
Q psy4730 1487 LEFASPATVS--RVG-MIYFELKC 1507 (1513)
Q Consensus 1487 l~~asPatvs--Rcg-~v~~~~~~ 1507 (1513)
....-||..- |.- .|+++.-+
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd 320 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPS 320 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCC
T ss_pred hhhCCHhHcCCCcCceEEEcCCcC
Confidence 8888899874 653 56665443
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.05 Score=63.07 Aligned_cols=55 Identities=15% Similarity=0.194 Sum_probs=38.0
Q ss_pred HHHHHHhc--ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCC
Q psy4730 1344 VYEMILVR--HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT 1402 (1513)
Q Consensus 1344 L~~~~~~~--~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t 1402 (1513)
|..++... .+++|.||||+|||++++.+++.+..-.... +...+.+..||+..++
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~----~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARK----ELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTT----SSCCEEEEEEETTCCC
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhc----cCCceEEEEEeccccC
Confidence 44444433 4799999999999999999998886532111 1113567788887766
No 159
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.00 E-value=0.027 Score=63.27 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.7
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...||+|+|||||||||+.+.++..++
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 356999999999999999999987653
No 160
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.91 E-value=0.01 Score=62.79 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=23.6
Q ss_pred cCCccceeccCCCccchHhHHHHHhcc
Q psy4730 727 QNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
..+++++|+||+|||||++++.+...+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999887654
No 161
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.025 Score=68.27 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=27.4
Q ss_pred HHHHHHH--hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1343 QVYEMIL--VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1343 qL~~~~~--~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
++|..+. ..+||+|+||||||||++.+++|..++
T Consensus 233 e~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp HHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 3455443 457999999999999999999998765
No 162
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.84 E-value=0.029 Score=62.10 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=23.6
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
..-|.+.|++||||||..+.|++.++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 346889999999999999999998864
No 163
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=94.83 E-value=0.098 Score=63.08 Aligned_cols=134 Identities=17% Similarity=0.216 Sum_probs=87.0
Q ss_pred CCccccccccchhhHhHHHHHHHHHHHHHHHHHhhccccccccceEEecCceEEEEEecCCCCC-------CCCCchhHH
Q psy4730 1122 PGAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAG-------RTELPDNLK 1194 (1513)
Q Consensus 1122 ~G~W~~~de~n~l~~~vLs~v~~~i~~i~~~l~~~~~~~~~~g~~i~~~p~~~iFiTmNp~y~g-------r~~LP~nLk 1194 (1513)
.|.-+|+||||+++..+++++ ..++.++.-. ..|. .++..|.+.+|+||-+.. ...||+.+-
T Consensus 300 dgGvl~lDEIn~~~~~~qsaL-------lEaMEe~~Vt--I~G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alL 368 (506)
T 3f8t_A 300 DGGILAVDHLEGAPEPHRWAL-------MEAMDKGTVT--VDGI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFL 368 (506)
T ss_dssp TTSEEEEECCTTCCHHHHHHH-------HHHHHHSEEE--ETTE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHH
T ss_pred CCCeeehHhhhhCCHHHHHHH-------HHHHhCCcEE--ECCE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHh
Confidence 567789999999999998766 4555555433 3366 888999999999995411 128999999
Q ss_pred hhhhcccc--cCCC-------------hHHHHHHHHHhc----CccchHHHHHHHHHHHHHHHhhcc-----CCCCCCcc
Q psy4730 1195 VLFRSVAM--MVPD-------------YAMIGEISLYSM----GFQNAKILAEKIVYTYKLCSEQLS-----SQSHYDYG 1250 (1513)
Q Consensus 1195 ~lFR~v~~--~~PD-------------~~~I~ei~L~~~----GF~~a~~la~ki~~~~~l~~~~ls-----~q~~yd~g 1250 (1513)
++|--+.. ..|| ...+.+...++. .-.-+......|+.+|...+..-. ....+-.+
T Consensus 369 DRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giS 448 (506)
T 3f8t_A 369 SHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVT 448 (506)
T ss_dssp TTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred hheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCccccccccccccccc
Confidence 99943322 2332 234444444444 233445667788888887765211 11345567
Q ss_pred hhhHHHHHHHhhhhhh
Q psy4730 1251 MRAVKSVLNAAGSLKI 1266 (1513)
Q Consensus 1251 lR~lk~vl~~a~~l~~ 1266 (1513)
-|++.++++.|....+
T Consensus 449 pR~leaLiRlA~A~A~ 464 (506)
T 3f8t_A 449 RRQLESVERLAKAHAR 464 (506)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7999999998865543
No 164
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.82 E-value=0.043 Score=65.14 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.7
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.+.++|+||+|+||||+++.+++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999887653
No 165
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.019 Score=68.57 Aligned_cols=128 Identities=19% Similarity=0.294 Sum_probs=70.3
Q ss_pred HHHHHHh--cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhccccccCCCCCCccCH
Q psy4730 1344 VYEMILV--RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI 1421 (1513)
Q Consensus 1344 L~~~~~~--~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~~~t~eW~DG~ 1421 (1513)
+|..... ..||+|+||||||||++.+++|..++ ..+..++.. ++++.|- |-
T Consensus 207 ~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--------------~~fi~v~~s-----~l~sk~v--------Ge 259 (437)
T 4b4t_I 207 LYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--------------ATFLRIVGS-----ELIQKYL--------GD 259 (437)
T ss_dssp HHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--------------CEEEEEESG-----GGCCSSS--------SH
T ss_pred HHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--------------CCEEEEEHH-----HhhhccC--------ch
Confidence 4554444 46999999999999999999998765 345555543 3333332 22
Q ss_pred HHHHHHHhhcc-CCCCceEEEEcC-----C--------CChHHHHhhhcccCCCCceeecCCCeeecCCCCeEEEeecCC
Q psy4730 1422 LAKTFREMAVS-TTPDRKWIMFDG-----P--------IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL 1487 (1513)
Q Consensus 1422 l~~~lR~~~~~-~~~~~~WivfDG-----~--------~d~~wiE~LNsvLDdn~~L~L~nGe~i~~~~~~~~iFE~~~l 1487 (1513)
-.+.+|..... ....+.-|.||. . -+...--.++.+|+. .+| +.-.+++-+|..|...
T Consensus 260 sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~------lDg--~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 260 GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ------LDG--FDDRGDVKVIMATNKI 331 (437)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH------HHH--CCCSSSEEEEEEESCS
T ss_pred HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH------hhC--cCCCCCEEEEEeCCCh
Confidence 24445543210 112335666661 0 011222233333310 011 1223456778888888
Q ss_pred CCCCcchhh--ccE-EEEeeCC
Q psy4730 1488 EFASPATVS--RVG-MIYFELK 1506 (1513)
Q Consensus 1488 ~~asPatvs--Rcg-~v~~~~~ 1506 (1513)
...=||.+- |.- .|+++.-
T Consensus 332 d~LDpALlRpGRfD~~I~v~lP 353 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENP 353 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCC
T ss_pred hhcCHHHhcCCceeEEEEcCCc
Confidence 888888874 665 3555543
No 166
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.60 E-value=0.24 Score=55.69 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=41.7
Q ss_pred hHHHHHHHHhcCCc-cccCCceeeeecceEEEEeecCC--C--------CCCChhhhccceEeecC--------CCChHH
Q psy4730 907 AVELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPT--M--------NTITGRLLRHMNIISID--------SFNEAT 967 (1513)
Q Consensus 907 ~le~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~--~--------~~~~~r~~~~f~~~~~~--------~~~~~~ 967 (1513)
..+.+|.+++.+.. .|.+...-..+....++.++|.. + ....+.|.+|..++..+ +.+.++
T Consensus 163 ~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~ 242 (267)
T 1u0j_A 163 VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQE 242 (267)
T ss_dssp THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHH
T ss_pred HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHH
Confidence 34667888765443 35443333466777888888863 2 25567899999999988 566666
Q ss_pred HHHHHH
Q psy4730 968 LSKIFT 973 (1513)
Q Consensus 968 l~~i~~ 973 (1513)
....|.
T Consensus 243 ~~~f~~ 248 (267)
T 1u0j_A 243 VKDFFR 248 (267)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 167
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.44 E-value=0.12 Score=63.82 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.5
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..||+|+||||||||++.++++...
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 168
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.41 E-value=0.046 Score=69.55 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=30.7
Q ss_pred HHHHHHhcCCccceeccCCCccchHhHHHHHhccCc
Q psy4730 720 FFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSK 755 (1513)
Q Consensus 720 ~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~~ 755 (1513)
..++..+..+.+++|+||+|||||++++.+...+..
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 456667888999999999999999999999876643
No 169
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.41 E-value=0.051 Score=60.27 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|.+.|++||||||.++.|++.+..
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998875
No 170
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.41 E-value=0.06 Score=64.07 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=23.9
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
...-|.|+|||||||||+++.|+..+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 3446899999999999999999987754
No 171
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.40 E-value=0.046 Score=61.43 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=32.9
Q ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHh----cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1321 QIKINLAKRNAQATDWYIEKIIQVYEMILV----RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1321 ~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~----~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.|.+-+...|+.+ ..+.+. |+.-+.. +.+++|.||||+|||.+.++|+..+
T Consensus 74 ~i~~~l~~qg~~~--~~~~~~--l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 74 RIYKILELNGYDP--QYAASV--FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCCH--HHHHHH--HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCH--HHHHHH--HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3455556666542 222222 3333333 4589999999999999999998653
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.40 E-value=0.012 Score=71.92 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.++++|+||+|+||||+.+.++..+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987753
No 173
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=94.37 E-value=0.0098 Score=71.63 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=46.3
Q ss_pred HHhhccCCCCCccCCCCChHHHHHHHHhcCCccccCCceeeeecceEEEEeecCC-C---------CCCChhhhccceE-
Q psy4730 889 MILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT-M---------NTITGRLLRHMNI- 957 (1513)
Q Consensus 889 ~~~dd~n~p~~~~~~~q~~le~lr~~~~~~~~yd~~~~~~~~~~~~~~~~a~~~~-~---------~~~~~r~~~~f~~- 957 (1513)
+|+||+|.-..+ ..+-|++.++.|.+.-.+ . ..-.++.++|||||- + ..+|+.++.||-+
T Consensus 304 l~lDEIn~~~~~------~qsaLlEaMEe~~VtI~G-~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi 374 (506)
T 3f8t_A 304 LAVDHLEGAPEP------HRWALMEAMDKGTVTVDG-I--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLI 374 (506)
T ss_dssp EEEECCTTCCHH------HHHHHHHHHHHSEEEETT-E--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEE
T ss_pred eehHhhhhCCHH------HHHHHHHHHhCCcEEECC-E--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeE
Confidence 677999944322 578889999987664322 2 444599999999996 2 2899999999955
Q ss_pred -eecCCCChHH
Q psy4730 958 -ISIDSFNEAT 967 (1513)
Q Consensus 958 -~~~~~~~~~~ 967 (1513)
+.+++|+.+.
T Consensus 375 ~i~~d~pd~e~ 385 (506)
T 3f8t_A 375 AFLGVDPRPGE 385 (506)
T ss_dssp EETTC------
T ss_pred EEecCCCChhH
Confidence 4477777654
No 174
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.17 E-value=0.017 Score=60.41 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.5
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|.|+|++||||||+.+.|+..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 175
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.16 E-value=0.02 Score=61.19 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.3
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
++|+|+||||+||||+++.|.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 689999999999999999987654
No 176
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.15 E-value=0.019 Score=59.87 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.8
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|.|++||||||+.+.|++.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998765
No 177
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.11 E-value=0.022 Score=61.53 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.3
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...+.|+||+||||||+++.|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45799999999999999999987653
No 178
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.06 E-value=0.022 Score=60.34 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+|||||||||+++.|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998764
No 179
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.06 E-value=0.042 Score=59.15 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=23.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
++++++.||||+||||.+..|++.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988763
No 180
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.92 E-value=0.018 Score=65.70 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=23.9
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
....|++|+|||||||||+.++++..++
T Consensus 42 ~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 42 VTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3457999999999999999999987643
No 181
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.92 E-value=0.042 Score=61.75 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.7
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|+|||||||||+.+.|++.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 588999999999999999998765
No 182
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.90 E-value=0.045 Score=61.29 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.0
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
...|++|+|||||||||+.++++..+
T Consensus 48 ~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 48 IPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 183
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.82 E-value=0.072 Score=58.54 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=22.5
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
-|.+.|++||||||..+.|++.+..
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5777899999999999999999875
No 184
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.74 E-value=0.069 Score=57.43 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=23.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.+++|+||+|+|||++.+.++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7999999999999999999988765
No 185
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.71 E-value=0.081 Score=56.94 Aligned_cols=55 Identities=9% Similarity=0.044 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCc-cccCCceeeeecceEEEEeecCC--CCCCChhhhccceEeecCCC
Q psy4730 909 ELLRQIIDHKHL-YDFQTVTRVDLVDIIYITAMIPT--MNTITGRLLRHMNIISIDSF 963 (1513)
Q Consensus 909 e~lr~~~~~~~~-yd~~~~~~~~~~~~~~~~a~~~~--~~~~~~r~~~~f~~~~~~~~ 963 (1513)
+.+|.++|.... -|.....-..+....+|.++|-+ ....-+++.+|..++..+.|
T Consensus 122 ~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~~~ 179 (212)
T 1tue_A 122 TYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNA 179 (212)
T ss_dssp HHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCSC
T ss_pred HHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcCCC
Confidence 567777775432 23333333445566788888876 33445788888888777643
No 186
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.70 E-value=0.022 Score=59.97 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|.|+|||||||+.+.|++.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999998765
No 187
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.70 E-value=0.028 Score=59.51 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=23.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...|+|+|++||||||+.+.|++.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998875
No 188
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.70 E-value=0.03 Score=59.45 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.8
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-+.|+||+||||||+++.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 368999999999999999998885
No 189
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.67 E-value=0.031 Score=59.38 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=23.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|.|++||||||+.+.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 190
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.66 E-value=0.03 Score=60.34 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.3
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...|+|+|++||||||+.+.|++.++
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998775
No 191
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.60 E-value=0.079 Score=57.85 Aligned_cols=97 Identities=15% Similarity=0.236 Sum_probs=55.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhhcccccc--CC---CCCC---ccCHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFD--SA---SHEW---RDGILA 1423 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~eL~G~~~--~~---t~eW---~DG~l~ 1423 (1513)
.-|.+.|++||||||.++.|++.+...+-. .+ ...=.|......+..-.+- +. ..++ .+.+|-
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~--------~v-~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~ 74 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIR--------DM-VFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMF 74 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCC--------CE-EEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCC--------cc-eeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHH
Confidence 357889999999999999999988753210 12 3334566544333322221 11 1222 233333
Q ss_pred HHHHHhhcc-----CCCCceEEEEc----------C---CCChHHHHhhhcc
Q psy4730 1424 KTFREMAVS-----TTPDRKWIMFD----------G---PIDAVWIENMNTV 1457 (1513)
Q Consensus 1424 ~~lR~~~~~-----~~~~~~WivfD----------G---~~d~~wiE~LNsv 1457 (1513)
.+-|.-... .-...+|+|+| | .+|..|++.+|..
T Consensus 75 ~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~ 126 (213)
T 4tmk_A 75 YAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDA 126 (213)
T ss_dssp HHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHH
Confidence 333321100 01234899999 3 3578999999974
No 192
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.47 E-value=0.035 Score=59.87 Aligned_cols=26 Identities=31% Similarity=0.190 Sum_probs=23.4
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-|.|+||+||||||+.+.|+..+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999886
No 193
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.45 E-value=0.035 Score=59.01 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.9
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
-|+|.|++||||||+.+.|++.++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999998874
No 194
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.34 E-value=0.063 Score=61.06 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.0
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
...||+|+|||||||||+.++++..+
T Consensus 72 ~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 72 IPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcChHHHHHHHHHHHc
Confidence 35689999999999999999998765
No 195
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.27 E-value=0.036 Score=60.90 Aligned_cols=37 Identities=22% Similarity=0.138 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1340 KIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1340 k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+.+-+.-+.....+.|+||+||||||+++.|+..+.
T Consensus 5 ~~~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 5 KIHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred ccccccccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3333344455566899999999999999999987653
No 196
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.27 E-value=0.035 Score=59.82 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=22.2
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|+|++||||||+.+.|++.++
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999998874
No 197
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.25 E-value=0.036 Score=59.03 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=22.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|+|++||||||+.+.|++.++
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998774
No 198
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.18 E-value=0.043 Score=59.58 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-|.|+||+||||||+.+.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44688999999999999999998876
No 199
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.17 E-value=0.038 Score=58.07 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=22.1
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|+|++||||||+.+.|++.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998875
No 200
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.17 E-value=0.036 Score=59.00 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.7
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..+.|+||+||||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999987654
No 201
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.17 E-value=0.038 Score=58.55 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.4
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|+|++||||||+.+.|++.++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 202
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.16 E-value=0.03 Score=59.58 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
..-+.|+||+||||||+.+.|+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999764
No 203
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.13 E-value=0.036 Score=59.66 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.7
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||+++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468899999999999999998764
No 204
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.04 E-value=0.094 Score=53.77 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.9
Q ss_pred CCccceeccCCCccchHhHHHHHhcc
Q psy4730 728 NDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 728 ~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
.+.++.|+||+|+|||++++.+...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999887644
No 205
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.03 E-value=0.042 Score=59.21 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=22.8
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-|.|+||+||||||+.+.|+..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34689999999999999999998774
No 206
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.96 E-value=0.041 Score=57.80 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=20.1
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+|+|+|||||||+.+.|++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999987
No 207
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.94 E-value=0.043 Score=57.55 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|.|+|++||||||+.+.|+..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 4689999999999999999988764
No 208
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.93 E-value=0.042 Score=60.25 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.4
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|.|+||+||||||+.+.|++.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998763
No 209
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.91 E-value=0.054 Score=55.61 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=24.1
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...++.|+||+||||||+.++++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998775
No 210
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.91 E-value=0.042 Score=58.02 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..|+|+|++||||||+.+.|++.++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998774
No 211
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.88 E-value=0.036 Score=57.64 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=19.7
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-|+|+|++||||||+.+.| +.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 35899999999999999999 444
No 212
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.87 E-value=0.061 Score=57.81 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.7
Q ss_pred ccceeccCCCccchHhHHHHHhccCc
Q psy4730 730 VPMMFVGPTGTGKSTIVLNLLLNLSK 755 (1513)
Q Consensus 730 ~~~ll~G~~g~GKt~~v~~~~~~~~~ 755 (1513)
.+++|+||+|||||+++..+...+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 79999999999999999988776543
No 213
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.86 E-value=0.042 Score=59.74 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=22.1
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-|.|+||+||||||+++.|+..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34689999999999999999987653
No 214
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.78 E-value=0.047 Score=56.98 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.5
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|.|++||||||+.+.|++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998875
No 215
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.75 E-value=0.18 Score=54.19 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=22.1
Q ss_pred EEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
|.+.|.-||||||.++.|++.+..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678899999999999999999875
No 216
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.73 E-value=0.044 Score=61.20 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|.|+||+||||||+.+.|++.++.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999999987753
No 217
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.72 E-value=0.04 Score=59.62 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=23.1
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
....|+|+|||||||||+.+.|++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345789999999999999999988763
No 218
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.70 E-value=0.092 Score=64.38 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=23.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
++++|.||||||||++.+.+++.++
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhC
Confidence 6999999999999999999999886
No 219
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.68 E-value=0.051 Score=58.47 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.5
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...|+|+|||||||||+++.|++.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45789999999999999999987653
No 220
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.58 E-value=0.048 Score=59.37 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=21.1
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+|.|++||||||+.+.|++.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988765
No 221
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.57 E-value=0.052 Score=57.43 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=22.0
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|.|++||||||+.+.|++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998775
No 222
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.52 E-value=0.049 Score=58.44 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|.|+|++||||||+.+.|++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999998875
No 223
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.50 E-value=0.05 Score=59.09 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.7
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|+|||||||+|..+.|++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999998875
No 224
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.50 E-value=0.05 Score=58.58 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.6
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-|.|+||+||||||+.+.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468899999999999999998765
No 225
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.49 E-value=0.051 Score=57.81 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=19.3
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-+.|+||+||||||+.+.|+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 226
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.46 E-value=0.051 Score=57.77 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.4
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|+|++||||||+.+.|++.++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998765
No 227
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.44 E-value=0.056 Score=58.63 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=23.4
Q ss_pred HHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1348 ILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
+....-+.|+||+||||||++++|+..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44456789999999999999999987763
No 228
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.43 E-value=0.056 Score=58.55 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.8
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|-|+||+||||||+.+.|+..++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998775
No 229
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.41 E-value=0.051 Score=59.55 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=22.7
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|+|++||||||+.+.|++.++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998875
No 230
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.39 E-value=0.053 Score=59.41 Aligned_cols=27 Identities=26% Similarity=0.189 Sum_probs=22.6
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.....+.|+||+||||||+++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345579999999999999999998754
No 231
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.36 E-value=0.057 Score=58.13 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=22.0
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|+|++||||||+.+.|++.++
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998875
No 232
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.30 E-value=0.068 Score=62.52 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=24.5
Q ss_pred HHHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1347 MILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.+..+.-+.|+||+||||||++++|+..+
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567789999999999999999997654
No 233
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.29 E-value=0.06 Score=56.07 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.8
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|.|.|++||||||+.+.|++.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998876
No 234
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.25 E-value=0.072 Score=56.91 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.8
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...-|.|.|++||||||+.+.|++.++
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999998875
No 235
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.24 E-value=0.061 Score=55.88 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.9
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|.|++||||||+.+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998775
No 236
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.23 E-value=0.059 Score=61.16 Aligned_cols=24 Identities=46% Similarity=0.455 Sum_probs=21.6
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-++|+||+||||||++++|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987764
No 237
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.20 E-value=0.057 Score=57.29 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.4
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|.|+|++||||||+.+.|++.++
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998765
No 238
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.11 E-value=0.24 Score=62.33 Aligned_cols=92 Identities=12% Similarity=0.156 Sum_probs=56.4
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEe--------------cCCCCChhhccccccCCCC
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKII--------------NPKSITMGQLYGEFDSASH 1415 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~i--------------np~~~t~~eL~G~~~~~t~ 1415 (1513)
.+..++|.|+|||||||++..++..+...+. .+... .-.+.|...++|.. + +
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~-----------~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~-~-~- 268 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGL-----------EVGLCAPTGKAARRLGEVTGRTASTVHRLLGYG-P-Q- 268 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTC-----------CEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEE-T-T-
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCC-----------eEEEecCcHHHHHHhHhhhcccHHHHHHHHcCC-c-c-
Confidence 4678999999999999999999887764221 11222 12334455555532 1 1
Q ss_pred CCccCHHHHHHHHhhccCCCCceEEEEc--CCCChHHHHhhhcccCCCCcee
Q psy4730 1416 EWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLC 1465 (1513)
Q Consensus 1416 eW~DG~l~~~lR~~~~~~~~~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~ 1465 (1513)
.|... .........+|.| +.+|..+.+.|-+.+.++..+.
T Consensus 269 ~~~~~----------~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 269 GFRHN----------HLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVL 310 (574)
T ss_dssp EESCS----------SSSCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEE
T ss_pred hhhhh----------hcccccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEE
Confidence 11110 1122345799999 7889999888877776554333
No 239
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.10 E-value=0.049 Score=57.43 Aligned_cols=25 Identities=28% Similarity=0.212 Sum_probs=18.3
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|.|++||||||+.+.|++.++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999988765
No 240
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.08 E-value=0.069 Score=57.77 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.5
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|.|.|++||||||+.+.|++.++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999998864
No 241
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.02 E-value=0.061 Score=58.80 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.4
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|+|++||||||+.+.|++.++
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998875
No 242
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.01 E-value=0.055 Score=62.88 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|+|||||||||+...||+.++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3699999999999999999997764
No 243
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.96 E-value=0.053 Score=59.08 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.8
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+|.|++||||||+.+.|++.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987664
No 244
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.90 E-value=0.066 Score=64.78 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.6
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.++|+|+||||||||++.+.||+.++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998875
No 245
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.89 E-value=0.098 Score=55.69 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=24.2
Q ss_pred CceEEEEc--CCCChHHHHhhhcccCCCCceee
Q psy4730 1436 DRKWIMFD--GPIDAVWIENMNTVLDDNKKLCL 1466 (1513)
Q Consensus 1436 ~~~WivfD--G~~d~~wiE~LNsvLDdn~~L~L 1466 (1513)
....|++| ..+++.|++.|+.+.|++..+.+
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~ 108 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFC 108 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEE
Confidence 35789999 45678899999999988655544
No 246
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.84 E-value=0.076 Score=57.51 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.5
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|+|+|++||||||+.+.|++.++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999998864
No 247
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.78 E-value=0.055 Score=59.50 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=22.3
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|+|++||||||+.+.|++.++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999998764
No 248
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.71 E-value=0.076 Score=56.38 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.3
Q ss_pred ceEEEeccCCCCchHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
.-|+|+|++||||||+.+.|++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999987
No 249
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.70 E-value=0.083 Score=56.02 Aligned_cols=26 Identities=35% Similarity=0.279 Sum_probs=23.4
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|+|+|++||||||+.+.|++.+..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998864
No 250
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.69 E-value=0.063 Score=60.22 Aligned_cols=26 Identities=38% Similarity=0.369 Sum_probs=22.5
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-|.|+||+||||||+.+.|++.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34689999999999999999996654
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.58 E-value=0.071 Score=56.86 Aligned_cols=25 Identities=40% Similarity=0.780 Sum_probs=22.4
Q ss_pred CccceeccCCCccchHhHHHHHhcc
Q psy4730 729 DVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 729 ~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
.+|++|+||+|+|||++++.++...
T Consensus 1 ~RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3799999999999999999998754
No 252
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.57 E-value=0.28 Score=56.47 Aligned_cols=26 Identities=42% Similarity=0.570 Sum_probs=23.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-++|+||+||||||+++.|+..+..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999988764
No 253
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.51 E-value=0.074 Score=57.88 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=21.3
Q ss_pred EEEeccCCCCchHHHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
|+|.|++||||||+.+.|++.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998774
No 254
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.49 E-value=0.11 Score=57.07 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-.-|.|+|||||||..+.|++.++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 3677899999999999999998875
No 255
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.49 E-value=0.086 Score=56.20 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.9
Q ss_pred EEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1354 LMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
|.|.|++||||||+.+.|++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998853
No 256
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.46 E-value=0.077 Score=55.03 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.8
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+.|+||.||||||++++++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999999887
No 257
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.42 E-value=0.073 Score=55.86 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.5
Q ss_pred ceEEEeccCCCCchHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTL 1371 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L 1371 (1513)
.-+.|+||+||||||+.+.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 45889999999999999953
No 258
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.29 E-value=0.081 Score=57.79 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=22.1
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|+|++||||||+.+.|++.++
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998875
No 259
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.27 E-value=0.081 Score=60.62 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.5
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..|+|.|||||||||+.+.|++.+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998765
No 260
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.25 E-value=0.07 Score=57.42 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.6
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|.|++||||||+.+.|++.++
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 261
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.24 E-value=0.31 Score=59.51 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=23.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-++|+|++||||||+++.|+..+..
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhh
Confidence 46899999999999999999987753
No 262
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.21 E-value=0.1 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=22.0
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-+.|+||+||||||+++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999998875
No 263
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.18 E-value=0.071 Score=58.78 Aligned_cols=24 Identities=29% Similarity=0.137 Sum_probs=15.4
Q ss_pred ceEEEeccCCCCchHHHHHHH-HHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLA-DSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~-~~~ 1375 (1513)
.-+.|+||+||||||+++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 458899999999999999998 765
No 264
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.14 E-value=0.091 Score=58.86 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=23.8
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-|.|+|++||||||+.+.|++.++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998775
No 265
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.11 E-value=0.098 Score=55.52 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.2
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
-|.|.|++||||||+.+.|++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999988753
No 266
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.11 E-value=0.14 Score=55.19 Aligned_cols=26 Identities=35% Similarity=0.319 Sum_probs=22.8
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|.|+|++||||||+.+.|+..+..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35889999999999999999988753
No 267
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.11 E-value=0.15 Score=55.32 Aligned_cols=26 Identities=19% Similarity=0.003 Sum_probs=23.0
Q ss_pred HhcceEEEeccCCCCchHHHHHHHHH
Q psy4730 1349 LVRHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1349 ~~~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
....-+.|+||+||||||++++|+..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45667899999999999999999876
No 268
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.05 E-value=0.33 Score=57.14 Aligned_cols=26 Identities=42% Similarity=0.570 Sum_probs=23.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-++|+||+||||||+++.|+..+..
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccc
Confidence 46899999999999999999988764
No 269
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.00 E-value=0.058 Score=58.47 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.5
Q ss_pred eEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
-|.|+|++||||||+++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999988863
No 270
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.95 E-value=0.062 Score=56.56 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=23.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
..|.|+|++||||||+++.|+..+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46889999999999999999988764
No 271
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.95 E-value=0.091 Score=58.56 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.9
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|+|.|+|||||||+.+.|++.++
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999998764
No 272
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.90 E-value=0.11 Score=54.76 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.4
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|.|+|++||||||+.+.|++.+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999998874
No 273
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.88 E-value=0.1 Score=57.74 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.7
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|+|++||||||+.+.|++.++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999998875
No 274
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.83 E-value=0.11 Score=60.02 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=23.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|.|+||+||||||+++.|+..+..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 47899999999999999999988764
No 275
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.75 E-value=0.12 Score=64.05 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=25.5
Q ss_pred HHHHHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1345 YEMILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1345 ~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..++..+..++|+|||||||||++++|+..+
T Consensus 254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 254 WLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445667789999999999999999987654
No 276
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.71 E-value=0.21 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.5
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
=|.+.|+-||||||.++.|++.+.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 377889999999999999999884
No 277
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.69 E-value=0.12 Score=57.21 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-|.|.||+||||||+.+.|++.++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44699999999999999999998764
No 278
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.64 E-value=0.12 Score=56.09 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.3
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-|+|+|++||||||+.+.|++.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34688999999999999999999886
No 279
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.61 E-value=0.19 Score=52.95 Aligned_cols=27 Identities=30% Similarity=0.122 Sum_probs=23.3
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
...+.++|++||||||+++.|...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 357899999999999999999887653
No 280
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.58 E-value=0.091 Score=56.69 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=19.4
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|.|+|++||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 281
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.58 E-value=0.1 Score=56.05 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.2
Q ss_pred eEEEeccCCCCchHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
-|.|+|++||||||+.+.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 488999999999999999998 5
No 282
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.50 E-value=0.11 Score=59.78 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.6
Q ss_pred HHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1348 ILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
+....-+.|+||+||||||++++|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4455679999999999999999999887
No 283
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.48 E-value=0.089 Score=58.37 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=21.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++|+..+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468899999999999999997554
No 284
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.42 E-value=0.11 Score=55.68 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.8
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-|.|+|++||||||+.+.|++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999876
No 285
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.41 E-value=0.13 Score=58.85 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=29.7
Q ss_pred cceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHHHH
Q psy4730 954 HMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSK 993 (1513)
Q Consensus 954 ~f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~~~ 993 (1513)
.+..+.+..++.+.|..=+..-++.|+..|+.++++.+..
T Consensus 196 ~~~~i~L~~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~ 235 (316)
T 3foz_A 196 QVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFA 235 (316)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3455677766788888777777788888888888887643
No 286
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.37 E-value=0.082 Score=59.29 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=22.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|+|+|+|||||||+.+.|++.++
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999987764
No 287
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.32 E-value=0.58 Score=59.34 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=25.2
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
.+.-+++.|+|||||||++..+..++..+
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~ 191 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQM 191 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999998888754
No 288
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.07 E-value=0.2 Score=57.85 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.8
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..+++|.||||+|||++.+.++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999998775
No 289
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.01 E-value=0.14 Score=59.36 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|-|+||+||||||+.+.|+..+..
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCchHHHHHHHHHhhccc
Confidence 45889999999999999999988764
No 290
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.92 E-value=0.15 Score=60.34 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=25.4
Q ss_pred HHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1347 MILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1347 ~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.+..+.-+.|+|||||||||++++|+..+.
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456677899999999999999999976553
No 291
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.90 E-value=0.14 Score=59.61 Aligned_cols=27 Identities=37% Similarity=0.362 Sum_probs=23.8
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
..-++|+||+||||||+++.|+..+..
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999988764
No 292
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.87 E-value=0.2 Score=59.54 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=24.1
Q ss_pred HHhcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1348 ILVRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1348 ~~~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
+..+..+.|+||+||||||+.+.|+..+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4456789999999999999999999754
No 293
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.75 E-value=0.18 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.274 Sum_probs=23.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
..+.++|++||||||++..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 46889999999999999999988764
No 294
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.74 E-value=0.24 Score=57.98 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=23.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
..|+|+|++||||||+.+.|++.++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45999999999999999999998874
No 295
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.74 E-value=0.23 Score=59.82 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.5
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|.|+||+||||||++++++..+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 478999999999999999987765
No 296
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.71 E-value=0.13 Score=54.31 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.5
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-++|+||+||||||+++++.-++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999987765
No 297
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.69 E-value=0.17 Score=58.13 Aligned_cols=73 Identities=25% Similarity=0.230 Sum_probs=44.5
Q ss_pred CCCCCCCCCccchHHHHHHhcCEEEEEEcCCC-----CCC---CCC------C--CCccccccchh-----h-hhHHHHH
Q psy4730 665 PEGPAGTGKTETSKDLAKAVAKQCIVFNCSDR-----PTF---PPN------L--RPSDLIIPTNV-----T-CMQNFFI 722 (1513)
Q Consensus 665 ~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~-----~~f---~~~------~--~~~~~~v~t~~-----~-~~~~~~~ 722 (1513)
+.||+|+|||+++..||+.++- .++||+.. ++. +|. . -+-++.-|... . ......+
T Consensus 8 i~GptgsGKt~la~~La~~~~~--~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~~i 85 (322)
T 3exa_A 8 IVGPTAVGKTKTSVMLAKRLNG--EVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATPLI 85 (322)
T ss_dssp EECCTTSCHHHHHHHHHHTTTE--EEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHHHH
T ss_pred EECCCcCCHHHHHHHHHHhCcc--ceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHHHH
Confidence 5799999999999999999985 46677533 221 221 0 01222222211 1 1223345
Q ss_pred HHHhcCCccceeccCCC
Q psy4730 723 NLYLQNDVPMMFVGPTG 739 (1513)
Q Consensus 723 ~~~~~~~~~~ll~G~~g 739 (1513)
+.+...|+.++|||.||
T Consensus 86 ~~i~~~gk~pIlVGGTg 102 (322)
T 3exa_A 86 TEIHERGRLPFLVGGTG 102 (322)
T ss_dssp HHHHHTTCEEEEESCCH
T ss_pred HHHHhCCCcEEEEcCcH
Confidence 55678899999999664
No 298
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.68 E-value=0.11 Score=57.13 Aligned_cols=24 Identities=25% Similarity=0.148 Sum_probs=20.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+.|+||+||||||++++++..+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999997554
No 299
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.65 E-value=0.13 Score=57.17 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=20.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+-|+||+||||||++++++..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999998654
No 300
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.46 E-value=0.12 Score=57.37 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.4
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999997554
No 301
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.43 E-value=0.13 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-|.|+|++||||||+.+.|++.+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999998765
No 302
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.43 E-value=0.16 Score=56.52 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|-|.||+||||||+.+.|+..++.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhch
Confidence 35789999999999999999988753
No 303
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.41 E-value=0.15 Score=55.78 Aligned_cols=26 Identities=35% Similarity=0.201 Sum_probs=22.2
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
...-+.|+||+||||||+++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998643
No 304
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.38 E-value=0.16 Score=54.41 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|.|.|++||||||+.+.|++.++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3788999999999999999998753
No 305
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.18 E-value=0.17 Score=54.38 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.8
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|.|.|++||||||+.+.|++.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999998765
No 306
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.13 E-value=0.15 Score=56.47 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.0
Q ss_pred hcceEEEeccCCCCchHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
...-+.|+||+||||||+++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345799999999999999999984
No 307
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.11 E-value=0.16 Score=54.34 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=21.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
..-|.|+|++||||||+.+.|++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346899999999999999999875
No 308
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.09 E-value=0.13 Score=56.04 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=21.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++|+..+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999997654
No 309
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.06 E-value=0.13 Score=59.55 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.5
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..|+|+|||||||||+.+.|++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998765
No 310
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.02 E-value=0.73 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=23.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|.++|++|+||||+++.|+..+..
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 46889999999999999999988764
No 311
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.00 E-value=0.19 Score=57.63 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=23.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|.|+|++||||||+.+.|+..+..
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35789999999999999999999875
No 312
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.93 E-value=0.14 Score=58.23 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+-|+||+||||||++++|+..+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999997654
No 313
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.87 E-value=0.16 Score=59.85 Aligned_cols=24 Identities=38% Similarity=0.346 Sum_probs=20.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+-|+||+||||||++++++...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 458899999999999999998654
No 314
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.86 E-value=0.2 Score=57.85 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.1
Q ss_pred CccceeccCCCccchHhHHHHHhccC
Q psy4730 729 DVPMMFVGPTGTGKSTIVLNLLLNLS 754 (1513)
Q Consensus 729 ~~~~ll~G~~g~GKt~~v~~~~~~~~ 754 (1513)
+.+++|.||||||||+++..+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998877654
No 315
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.83 E-value=0.25 Score=54.57 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=21.0
Q ss_pred HHHhcceEEEeccCCCCchHHHHHHH
Q psy4730 1347 MILVRHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1347 ~~~~~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
.+....-++++|||||||||++....
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 44557889999999999999877553
No 316
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.77 E-value=0.14 Score=57.69 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.8
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+-|+||+||||||++++|+..+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999997654
No 317
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.76 E-value=0.14 Score=57.12 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.4
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999997654
No 318
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.73 E-value=0.15 Score=56.94 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.5
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999997654
No 319
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.68 E-value=0.18 Score=54.89 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=20.2
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|.|.|++||||||+.+.|++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 320
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.64 E-value=0.15 Score=57.39 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.3
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999997654
No 321
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.59 E-value=0.18 Score=53.53 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.5
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|.|+|++||||||+++.|+.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3689999999999999999864
No 322
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.57 E-value=0.15 Score=57.67 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+-|+||+||||||++++|+..+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468899999999999999997654
No 323
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.55 E-value=0.15 Score=56.66 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=20.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+.|+||+||||||++++|+..+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999997654
No 324
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.49 E-value=0.18 Score=56.48 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=20.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
..-+.|+||+||||||++++|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999864
No 325
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.46 E-value=0.18 Score=57.08 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
..-+.|+||+||||||++++|+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999865
No 326
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.33 E-value=0.45 Score=58.24 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhcc-eEEEeccCCCCchHHHHHHHHHHHhH
Q psy4730 1336 WYIEKIIQVYEMILVRH-GLMVVGESFGGKTTAYQTLADSLTDI 1378 (1513)
Q Consensus 1336 ~~~~k~~qL~~~~~~~~-gvilvG~tgsGKTt~~~~L~~~~~~l 1378 (1513)
....-+..+...+..+. .++|.|++|||||+++..+++.+...
T Consensus 29 ~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 33333333333333344 99999999999999999999888653
No 327
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.28 E-value=0.16 Score=55.99 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.3
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++|+..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999997554
No 328
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.26 E-value=0.18 Score=59.73 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=21.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+-|+||+||||||++++++..+
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 457899999999999999998654
No 329
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.26 E-value=0.16 Score=57.17 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=21.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++|+..+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4578999999999999999998654
No 330
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.25 E-value=0.18 Score=56.41 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=22.1
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|.|.|++||||||+.+.|++.++
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999998876
No 331
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.25 E-value=0.2 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.3
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..+|+|+||||+||||+...|++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 35899999999999999998876644
No 332
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.23 E-value=0.18 Score=59.21 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.3
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++++..+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468899999999999999998654
No 333
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.23 E-value=0.2 Score=53.45 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.4
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|.|+|++|+||||+++.|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 3589999999999999999864
No 334
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=88.22 E-value=0.36 Score=59.48 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=34.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCChhh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQ 1405 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~~e 1405 (1513)
...+++.|.||||||++++++...+-.-. ....+.++.++||....+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~-------~p~~v~l~liDpK~~el~~ 214 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKA-------QPEDVRFIMIDPKMLELSV 214 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTC-------CTTTEEEEEECCSSSGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhC-------CCceEEEEEECCchhhhhh
Confidence 35799999999999999999876543210 0124788999999865443
No 335
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.18 E-value=0.17 Score=57.18 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++|+..+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3468899999999999999997654
No 336
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.14 E-value=0.39 Score=57.65 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCccccHHHHHHHHHHHHHHHhcc-eEEEeccCCCCchHHHHHHHHH
Q psy4730 1319 IEQIKINLAKRNAQATDWYIEKIIQVYEMILVRH-GLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1319 ~~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~-gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
.+.+.-.+....+. ....++.+..+...... -|.|+||+|+||||++++|+..
T Consensus 39 l~~is~~i~~Ge~~---~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 39 LNLIELRMRAGNIQ---LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHTCHH---HHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred hhhccceecCCCCc---ccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 34444444444432 22234444333333344 5679999999999999999754
No 337
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.09 E-value=0.16 Score=58.30 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..|+|+|||||||||+...|++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 4688999999999999999998764
No 338
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.06 E-value=0.19 Score=58.64 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|.|.|||||||||+.+.|++.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4689999999999999999998875
No 339
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.04 E-value=0.19 Score=53.08 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.3
Q ss_pred CCccceeccCCCccchHhHHHHHhcc
Q psy4730 728 NDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 728 ~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
.++.+.|+||+|||||++++.+....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 36788999999999999999887654
No 340
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.03 E-value=0.17 Score=56.82 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++|+..+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999997554
No 341
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.02 E-value=0.17 Score=57.35 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=21.5
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++|+..+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999997654
No 342
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.94 E-value=0.2 Score=59.18 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+.|+||+||||||++++++..+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 457899999999999999998654
No 343
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.93 E-value=0.2 Score=59.09 Aligned_cols=24 Identities=33% Similarity=0.264 Sum_probs=20.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+-|+||+||||||++++++..+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 457899999999999999998654
No 344
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=87.89 E-value=0.22 Score=57.73 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.8
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|-|.||+||||||+.+.|+..+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999988775
No 345
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.86 E-value=0.22 Score=57.60 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|-|+||+||||||+.++|+..+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999998765
No 346
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.70 E-value=0.18 Score=57.34 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.8
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+.|+||+||||||++++|+..+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 458899999999999999997654
No 347
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.67 E-value=0.19 Score=56.28 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.0
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+.|+||+||||||++++|+..+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 457899999999999999998665
No 348
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.56 E-value=0.26 Score=53.78 Aligned_cols=26 Identities=19% Similarity=0.038 Sum_probs=22.3
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-++|+||+||||||+++.++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999986654
No 349
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.54 E-value=0.21 Score=59.15 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=20.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+.|+||+||||||++++++..+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 468899999999999999998654
No 350
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.52 E-value=0.22 Score=59.07 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=21.3
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+-|+||+||||||++++++..+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3467899999999999999998654
No 351
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.50 E-value=0.19 Score=57.60 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..|+|+|||||||||+...|++.++
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 4688999999999999999998764
No 352
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.49 E-value=0.25 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.5
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999864
No 353
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.40 E-value=0.22 Score=59.43 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++++..+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 4578999999999999999998654
No 354
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.39 E-value=0.23 Score=56.89 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=20.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
.-|+|.|+|||||||+.+.|++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999874
No 355
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.32 E-value=0.2 Score=56.22 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++|+..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999997654
No 356
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.32 E-value=0.2 Score=56.63 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++++..+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468899999999999999997654
No 357
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=87.26 E-value=0.28 Score=56.60 Aligned_cols=26 Identities=42% Similarity=0.469 Sum_probs=23.4
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|+++|++||||||++..||..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 46899999999999999999988864
No 358
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.21 E-value=0.26 Score=50.05 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.9
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|+++|++|+||||+++.|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999864
No 359
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.18 E-value=0.25 Score=50.97 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.4
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|.|+|++|+||||+++.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999863
No 360
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.18 E-value=0.35 Score=55.93 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=28.4
Q ss_pred ceEeecCCCChHHHHHHHHHHhhhhhhccchhHHHHH
Q psy4730 955 MNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKL 991 (1513)
Q Consensus 955 f~~~~~~~~~~~~l~~i~~~~l~~~~~~~f~~~~~~~ 991 (1513)
+..+.++.++.+.|..=+..-++.|+..|+.++++.+
T Consensus 203 ~~~~~L~~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L 239 (323)
T 3crm_A 203 VAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEAL 239 (323)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4567777777888888888777888877888877766
No 361
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.14 E-value=0.26 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=18.8
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|+++|++|+||||+++.|..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998863
No 362
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.09 E-value=0.31 Score=56.56 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=46.1
Q ss_pred CCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCC-----CC---CCCC------C--Ccccccc-ch-----hhh-hHHH
Q psy4730 664 APEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRP-----TF---PPNL------R--PSDLIIP-TN-----VTC-MQNF 720 (1513)
Q Consensus 664 ~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~-----~f---~~~~------~--~~~~~v~-t~-----~~~-~~~~ 720 (1513)
.+.||+|+|||++...||+.+|.. ++|++... +. +|.. . +-++.-| .. +.. .-..
T Consensus 44 vI~GPTgsGKTtLa~~LA~~l~~e--iIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~a~~ 121 (339)
T 3a8t_A 44 VLMGATGTGKSRLSIDLAAHFPLE--VINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLAGK 121 (339)
T ss_dssp EEECSTTSSHHHHHHHHHTTSCEE--EEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHCCCc--EEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHHHHH
Confidence 568999999999999999999854 66766442 21 1211 0 1233333 21 111 1222
Q ss_pred HHHHHhcCCccceeccCCCc
Q psy4730 721 FINLYLQNDVPMMFVGPTGT 740 (1513)
Q Consensus 721 ~~~~~~~~~~~~ll~G~~g~ 740 (1513)
.+..+...++.+++||.||.
T Consensus 122 ~i~~i~~~g~~pIlvGGtgl 141 (339)
T 3a8t_A 122 AVSEITGRRKLPVLVGGSNS 141 (339)
T ss_dssp HHHHHHHTTCEEEEECCCHH
T ss_pred HHHHHHhcCCeEEEEcCHHH
Confidence 44556778899999998754
No 363
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.06 E-value=0.25 Score=59.39 Aligned_cols=21 Identities=38% Similarity=0.513 Sum_probs=19.5
Q ss_pred EEEeccCCCCchHHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~~ 1374 (1513)
+.|+||+||||||++++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999765
No 364
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=87.03 E-value=0.23 Score=53.32 Aligned_cols=26 Identities=35% Similarity=0.687 Sum_probs=21.2
Q ss_pred CCccceeccCCCccchHhHHHHHhcc
Q psy4730 728 NDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 728 ~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
.++.+.|+||+|+||||+++.+....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57889999999999999999887643
No 365
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.01 E-value=0.22 Score=52.46 Aligned_cols=21 Identities=48% Similarity=0.604 Sum_probs=19.2
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|+|+|++|+||||+++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999875
No 366
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.00 E-value=0.41 Score=56.89 Aligned_cols=74 Identities=18% Similarity=0.074 Sum_probs=44.9
Q ss_pred CCCCCCCCCccchHHHHHHhcCEEEEEEcCCC-----CCC---CCC------CC--Cccccccc-----hhhh-hHHHHH
Q psy4730 665 PEGPAGTGKTETSKDLAKAVAKQCIVFNCSDR-----PTF---PPN------LR--PSDLIIPT-----NVTC-MQNFFI 722 (1513)
Q Consensus 665 ~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~-----~~f---~~~------~~--~~~~~v~t-----~~~~-~~~~~~ 722 (1513)
+.||+|+|||+++..||+.++.. +++++.. ++. +|. .. +-+..-|. .+.. -....+
T Consensus 7 i~GptgsGKttla~~La~~~~~~--iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~~i 84 (409)
T 3eph_A 7 IAGTTGVGKSQLSIQLAQKFNGE--VINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNAI 84 (409)
T ss_dssp EEECSSSSHHHHHHHHHHHHTEE--EEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHHHH
T ss_pred EECcchhhHHHHHHHHHHHCCCe--EeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHHHH
Confidence 46999999999999999999854 5776542 221 121 00 11122222 1111 123345
Q ss_pred HHHhcCCccceeccCCCc
Q psy4730 723 NLYLQNDVPMMFVGPTGT 740 (1513)
Q Consensus 723 ~~~~~~~~~~ll~G~~g~ 740 (1513)
..+...|+..+|||.||-
T Consensus 85 ~~i~~~g~~pilVGGTgl 102 (409)
T 3eph_A 85 EDIHRRGKIPIVVGGTHY 102 (409)
T ss_dssp HHHHTTTCEEEEECSCGG
T ss_pred HHHHhcCCCEEEECChHH
Confidence 556788999999997764
No 367
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.95 E-value=0.26 Score=56.47 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=20.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|.|.|++||||||+.+.|++.++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~ 31 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRR 31 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46889999999999999999998874
No 368
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.93 E-value=0.22 Score=56.21 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.2
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+.|+||+||||||++++|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999997654
No 369
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.79 E-value=0.16 Score=58.67 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=22.1
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
...-|-|+||+||||||++++|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34579999999999999999997654
No 370
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.78 E-value=0.27 Score=54.30 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.7
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|.|+|++||||||+.+.|++.++
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 371
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.74 E-value=0.18 Score=59.19 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+.|+||+||||||++++++..+
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 468899999999999999998654
No 372
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.73 E-value=0.29 Score=49.87 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.7
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|+++|++|+||||+++.|..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999988763
No 373
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.72 E-value=0.25 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.7
Q ss_pred CCccceeccCCCccchHhHHHHHhcc
Q psy4730 728 NDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 728 ~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
.++.+.|+||+|+|||++++.++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 56788999999999999999988754
No 374
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.72 E-value=0.33 Score=49.67 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.1
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-.+|+||+||||||++.++.-++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999987763
No 375
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=86.68 E-value=0.31 Score=55.97 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=23.4
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-|+++|++|+||||++..|+..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34799999999999999999998876
No 376
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.66 E-value=0.21 Score=59.26 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=22.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-+.|+||+||||||+++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988764
No 377
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.62 E-value=0.26 Score=60.15 Aligned_cols=31 Identities=29% Similarity=0.304 Sum_probs=25.3
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHhHhh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTDIAA 1380 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~l~~ 1380 (1513)
...-|.|+||+||||||++++|+.......+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 3456999999999999999999887654433
No 378
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=86.49 E-value=0.38 Score=55.42 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=20.3
Q ss_pred cceEEEeccCCCCchHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
..-+.|+||+|+||||++++|+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999999998
No 379
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.38 E-value=0.3 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.1
Q ss_pred cceEEEeccCCCCchHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
..-|+++|++|+||||+++.|..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998864
No 380
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.37 E-value=0.31 Score=49.68 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.2
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999998863
No 381
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.22 E-value=0.32 Score=49.86 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=18.9
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|+++|++|+||||+++.|..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999853
No 382
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.20 E-value=0.31 Score=49.90 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=18.5
Q ss_pred eEEEeccCCCCchHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
-|+++|++|+||||+++.|.
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999999886
No 383
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.19 E-value=0.32 Score=49.76 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=18.4
Q ss_pred eEEEeccCCCCchHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
-|+++|++|+||||+++.|.
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999885
No 384
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=86.15 E-value=0.29 Score=52.93 Aligned_cols=28 Identities=21% Similarity=0.495 Sum_probs=23.7
Q ss_pred cCCccceeccCCCccchHhHHHHHhccC
Q psy4730 727 QNDVPMMFVGPTGTGKSTIVLNLLLNLS 754 (1513)
Q Consensus 727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~~ 754 (1513)
..++.+.|+||+|+|||++++.+...++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567788999999999999999887653
No 385
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.14 E-value=0.35 Score=53.23 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=20.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|++.|++||||||.++.|++.+..
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35888999999999999999999875
No 386
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.14 E-value=0.32 Score=50.34 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=19.0
Q ss_pred ceEEEeccCCCCchHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
.-|+++|++|+||||+++.|.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999885
No 387
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.10 E-value=0.33 Score=49.60 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.0
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|+++|++|+||||+++.|..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999864
No 388
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.07 E-value=0.65 Score=50.26 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1334 TDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1334 ~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
+......+..++.. ....-|+++|++|+||||+++.|+..+.
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 14 NKRLAEKNREALRE-SGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHH-HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhcc-cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33444444444332 2345789999999999999999987753
No 389
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.04 E-value=0.25 Score=56.49 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.8
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+.|+||+||||||++++|+..+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 468899999999999999997554
No 390
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.01 E-value=0.33 Score=49.82 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.9
Q ss_pred ceEEEeccCCCCchHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
--|+++|++|+||||+++.|.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 368999999999999998886
No 391
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.95 E-value=0.38 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|.+.|++||||||..+.|++.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45788999999999999999998875
No 392
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=85.89 E-value=0.3 Score=57.53 Aligned_cols=25 Identities=24% Similarity=0.113 Sum_probs=21.1
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-+-|+||+||||||++++++..+
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3468899999999999999997543
No 393
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.85 E-value=0.98 Score=54.60 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=23.4
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|+++|++|+||||+...|+..+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999988865
No 394
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=85.83 E-value=0.32 Score=50.68 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.3
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|.|+|++|+||||+++.|..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999863
No 395
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.81 E-value=0.33 Score=49.82 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.2
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999998863
No 396
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.77 E-value=0.33 Score=50.11 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.2
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3589999999999999998853
No 397
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=85.74 E-value=0.34 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.4
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998853
No 398
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=85.61 E-value=0.28 Score=52.58 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=22.8
Q ss_pred hcCCccceeccCCCccchHhHHHHHhcc
Q psy4730 726 LQNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
+..++.++|+|++|||||++.+.+...+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999887654
No 399
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.58 E-value=0.32 Score=49.76 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=18.1
Q ss_pred eEEEeccCCCCchHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
=|+++|++|+||||+++.|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999884
No 400
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=85.58 E-value=0.32 Score=52.41 Aligned_cols=28 Identities=29% Similarity=0.662 Sum_probs=24.0
Q ss_pred hcCCccceeccCCCccchHhHHHHHhcc
Q psy4730 726 LQNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
...++.++|+||+|||||++.+.+...+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3457789999999999999999988765
No 401
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=85.56 E-value=0.35 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.5
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998864
No 402
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.55 E-value=0.34 Score=50.86 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.5
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|.|+|++|+||||+++.|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999863
No 403
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=85.49 E-value=0.34 Score=57.54 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.5
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..|+|.|||||||||+...|++.++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4688999999999999999998875
No 404
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=85.44 E-value=0.19 Score=59.16 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=20.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
.-+-|+||+||||||++++++..+
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999998654
No 405
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=85.41 E-value=0.32 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|.|.|++||||||+.+.|++.++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3589999999999999999988764
No 406
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=85.35 E-value=0.35 Score=49.58 Aligned_cols=20 Identities=45% Similarity=0.476 Sum_probs=18.2
Q ss_pred eEEEeccCCCCchHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
=|+++|++|+||||+++.|.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38899999999999999885
No 407
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=85.35 E-value=0.32 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.6
Q ss_pred ccceeccCCCccchHhHHHHHhccC
Q psy4730 730 VPMMFVGPTGTGKSTIVLNLLLNLS 754 (1513)
Q Consensus 730 ~~~ll~G~~g~GKt~~v~~~~~~~~ 754 (1513)
..++|+|++|||||++.+.+...+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4688999999999999999887653
No 408
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.32 E-value=0.37 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.3
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999998863
No 409
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.24 E-value=0.48 Score=58.59 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730 719 NFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 719 ~~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
...++..+..+..++++|||||||||+++.++..+
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44567778899999999999999999999877644
No 410
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.24 E-value=0.35 Score=55.08 Aligned_cols=21 Identities=33% Similarity=0.308 Sum_probs=19.5
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|.|.|++||||||+.+.|++
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999983
No 411
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=85.23 E-value=0.31 Score=56.08 Aligned_cols=24 Identities=46% Similarity=0.423 Sum_probs=19.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
.--|+|+||+|+||||+++.|...
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 346799999999999999998643
No 412
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.19 E-value=0.37 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.001 Sum_probs=21.0
Q ss_pred cceEEEeccCCCCchHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
..-++|+|||||||||+.+.++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 413
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=85.12 E-value=0.42 Score=55.01 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.4
Q ss_pred cceEEEeccCCCCchHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
..-+.|+||+||||||++++|+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 56789999999999999999864
No 414
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.09 E-value=0.56 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.2
Q ss_pred hcceEEEeccCCCCchHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
...-|+++|++|+||||+++.|.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34579999999999999999886
No 415
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.08 E-value=0.52 Score=56.32 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=23.1
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.+..++++|+|||||||+++.++..+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999866543
No 416
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.00 E-value=0.36 Score=60.21 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=24.1
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
....|.|+|++||||||+.+.|+..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3446889999999999999999998863
No 417
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=84.98 E-value=0.55 Score=55.23 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.-|.|+|+||+||||+++.|...+.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 3688999999999999999988764
No 418
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=84.89 E-value=1.4 Score=47.90 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCcc-ccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHH
Q psy4730 1320 EQIKINLAKRNAQ-ATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQT 1370 (1513)
Q Consensus 1320 ~~i~~~~~~~~l~-~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~ 1370 (1513)
..+.+.+.+.|+. +++.. .+++ ..+..++.+++++|||||||.++-.
T Consensus 29 ~~l~~~l~~~g~~~~~~~Q-~~~i---~~~~~~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 29 PDLLKSIIRVGILKPTPIQ-SQAW---PIILQGIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp HHHHHHHHHHTCCSCCHHH-HHHH---HHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHH-HHHH---HHHhCCCCEEEECCCCChHHHHHHH
Confidence 4566677777874 55544 3333 2233567899999999999988654
No 419
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.86 E-value=0.41 Score=54.78 Aligned_cols=27 Identities=26% Similarity=0.046 Sum_probs=23.3
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...-+.|+||||+||||+++.++..+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999987764
No 420
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.85 E-value=0.39 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.1
Q ss_pred cceEEEeccCCCCchHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
..-|+++|++|+||||+++.|..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998864
No 421
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=84.84 E-value=0.4 Score=50.29 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.4
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+|+|++|+||||+++.|..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998863
No 422
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=84.77 E-value=0.4 Score=49.55 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.0
Q ss_pred ceEEEeccCCCCchHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
.-|+++|++|+||||+++.|.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999886
No 423
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.75 E-value=0.55 Score=55.53 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=30.4
Q ss_pred HHHHHHhcCCccceeccCCCccchHhHHHHHhccC
Q psy4730 720 FFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLS 754 (1513)
Q Consensus 720 ~~~~~~~~~~~~~ll~G~~g~GKt~~v~~~~~~~~ 754 (1513)
..++..+..+..++++||+|+||||+++.++...+
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 56677889999999999999999999998877543
No 424
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=84.73 E-value=0.42 Score=48.75 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=18.3
Q ss_pred EEEeccCCCCchHHHHHHHH
Q psy4730 1354 LMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1354 vilvG~tgsGKTt~~~~L~~ 1373 (1513)
|+++|++|+||||+++.|..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999998864
No 425
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=84.71 E-value=0.58 Score=54.75 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=22.6
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..-|.|+|+|||||||+++.|+..+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 34688999999999999999987764
No 426
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=84.70 E-value=0.41 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.284 Sum_probs=19.0
Q ss_pred ceEEEeccCCCCchHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
.-|+++|++|+||||+++.|.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999986
No 427
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=84.69 E-value=0.23 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.8
Q ss_pred ceEEEeccCCCCchHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
.-|.|+|++|+||||+++.|...
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999988643
No 428
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=84.68 E-value=0.38 Score=50.78 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.6
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999864
No 429
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.67 E-value=0.42 Score=49.06 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.5
Q ss_pred cceEEEeccCCCCchHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
..-|+++|++|+||||+++.|.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3469999999999999999885
No 430
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=84.61 E-value=0.42 Score=49.41 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=19.5
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999863
No 431
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=84.41 E-value=0.41 Score=49.55 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.5
Q ss_pred cceEEEeccCCCCchHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
..-|+++|++|+||||+++.|.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3468999999999999999885
No 432
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.34 E-value=0.42 Score=52.56 Aligned_cols=25 Identities=32% Similarity=0.209 Sum_probs=21.7
Q ss_pred hcceEEEeccCCCCchHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
...-+.|+||+||||||+++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999864
No 433
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=84.34 E-value=0.39 Score=49.74 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.9
Q ss_pred ceEEEeccCCCCchHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
.-|+++|++|+||||+++.|.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999885
No 434
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=84.34 E-value=0.47 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.3
Q ss_pred cceEEEeccCCCCchHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
..||++.|+||+||||+.-.|.+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999888765
No 435
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=84.33 E-value=0.65 Score=52.05 Aligned_cols=21 Identities=29% Similarity=0.552 Sum_probs=18.7
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|.|+|++||||||+++.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 488999999999999999853
No 436
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=84.32 E-value=0.4 Score=50.75 Aligned_cols=25 Identities=40% Similarity=0.780 Sum_probs=21.2
Q ss_pred CccceeccCCCccchHhHHHHHhcc
Q psy4730 729 DVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 729 ~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
++.+.|+||+|+||||+++.+...+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578899999999999999887654
No 437
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=84.29 E-value=0.72 Score=53.55 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.4
Q ss_pred cceEEEeccCCCCchHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
...++|.||+|+||||+++.+++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 478999999999999999988754
No 438
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=84.25 E-value=0.4 Score=56.40 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=20.9
Q ss_pred cceEEEeccCCCCchHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
..-+.|+||+|+||||++++|+..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHhcc
Confidence 457999999999999999999743
No 439
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.24 E-value=0.44 Score=50.10 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=19.6
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
--|+++|++|+||||+++.|..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999864
No 440
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=84.21 E-value=0.44 Score=50.29 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=19.4
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+|+|++|+||||+++.|..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3699999999999999998864
No 441
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=84.19 E-value=0.27 Score=59.39 Aligned_cols=25 Identities=28% Similarity=0.134 Sum_probs=21.4
Q ss_pred cceEEEeccCCCCchHHHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
..-|+|+|+|||||||+.+.|++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999997644
No 442
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=84.12 E-value=0.43 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.0
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|+++|++|+||||+++.|..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999864
No 443
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=84.09 E-value=0.45 Score=49.54 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.6
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4699999999999999998863
No 444
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.08 E-value=0.46 Score=49.31 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.2
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999998853
No 445
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=84.08 E-value=0.45 Score=50.28 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.1
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|+++|++|+||||+++.|..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999864
No 446
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=84.05 E-value=0.42 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.5
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|+++|++|+||||+++.|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999998863
No 447
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=84.01 E-value=0.45 Score=49.70 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=19.0
Q ss_pred ceEEEeccCCCCchHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
.-|+++|++|+||||+++.|.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999885
No 448
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=83.99 E-value=0.42 Score=52.18 Aligned_cols=29 Identities=34% Similarity=0.701 Sum_probs=22.9
Q ss_pred HhcCCccceeccCCCccchHhHHHHHhcc
Q psy4730 725 YLQNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 725 ~~~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
-+..++.+.|+||+|+|||++++.+....
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35678899999999999999999877644
No 449
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=83.88 E-value=1.2 Score=47.48 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCcc-ccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHH
Q psy4730 1320 EQIKINLAKRNAQ-ATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQT 1370 (1513)
Q Consensus 1320 ~~i~~~~~~~~l~-~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~ 1370 (1513)
+.+.+.+.+.|+. +++.. ..++. .+...+.+++.+|||||||.++-.
T Consensus 10 ~~l~~~l~~~~~~~~~~~Q-~~~i~---~~~~~~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 10 PEILEALHGRGLTTPTPIQ-AAALP---LALEGKDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp HHHHHHHHHTTCCSCCHHH-HHHHH---HHHTTCCEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHH-HHHHH---HHcCCCCEEEECCCCChHHHHHHH
Confidence 4455566667774 44443 33332 233457899999999999987543
No 450
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.87 E-value=1.2 Score=47.56 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHH
Q psy4730 1320 EQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQT 1370 (1513)
Q Consensus 1320 ~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~ 1370 (1513)
+.+.+.+.+.|+..-..+...++. .+...+.+++++|||||||.++-.
T Consensus 12 ~~l~~~l~~~g~~~~~~~Q~~~i~---~~~~~~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 12 RELLMGIFEMGWEKPSPIQEESIP---IALSGRDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp HHHHHHHHTTTCCSCCHHHHHHHH---HHHTTCCEEEECCSSSTTHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHH---HHccCCCEEEECCCCCchHHHHHH
Confidence 455666667777433333344433 233467899999999999977653
No 451
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=83.85 E-value=0.46 Score=49.80 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.5
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998864
No 452
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=83.83 E-value=0.47 Score=49.26 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.3
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999988863
No 453
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=83.79 E-value=0.44 Score=50.11 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.8
Q ss_pred ceEEEeccCCCCchHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
.-|+++|++|+||||+++.|.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999875
No 454
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=83.68 E-value=0.46 Score=55.08 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
.-++|+|++||||||+++.|...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999999754
No 455
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=83.67 E-value=0.39 Score=50.52 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.7
Q ss_pred CccceeccCCCccchHhHHHHHhcc
Q psy4730 729 DVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 729 ~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
.+.++|+|++|||||++.+.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999887755
No 456
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=83.55 E-value=0.49 Score=50.38 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.3
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+|+|++|+||||+++.|..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998863
No 457
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=83.53 E-value=0.38 Score=57.91 Aligned_cols=22 Identities=50% Similarity=0.457 Sum_probs=19.3
Q ss_pred eEEEeccCCCCchHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
-|+|+|++|+||||+++.|+..
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4699999999999999999743
No 458
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=83.51 E-value=0.21 Score=54.99 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEeccCCCCchHHHHHHHHHHH
Q psy4730 1355 MVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1355 ilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
.|+||+||||||++++++.++.
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcccc
Confidence 5789999999999999988764
No 459
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=83.48 E-value=0.5 Score=49.28 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=18.6
Q ss_pred eEEEeccCCCCchHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
-|+++|++|+||||+++.|.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999886
No 460
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=83.32 E-value=0.51 Score=49.69 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.0
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+|+|++|+||||+++.|..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999987754
No 461
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=83.25 E-value=0.54 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=19.5
Q ss_pred cceEEEeccCCCCchHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
..-|+++|++|+||||+++.|..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999998863
No 462
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=83.24 E-value=0.59 Score=50.41 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=22.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-.+|+||+||||||++.++.-++..
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 36789999999999999999887763
No 463
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=83.13 E-value=0.48 Score=52.27 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.5
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+|+|++|+||||+++.|..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 4689999999999999998863
No 464
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=83.10 E-value=0.3 Score=53.76 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.1
Q ss_pred ceEEEeccCCCCchHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADS 1374 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~ 1374 (1513)
.-|.|+|++||||||+++.|+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35889999999999999998765
No 465
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=83.06 E-value=0.53 Score=49.55 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.3
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
--|+|+|++|+||||+++.|..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999998853
No 466
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=83.06 E-value=0.38 Score=50.87 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=22.2
Q ss_pred hcCCccceeccCCCccchHhHHHHHhc
Q psy4730 726 LQNDVPMMFVGPTGTGKSTIVLNLLLN 752 (1513)
Q Consensus 726 ~~~~~~~ll~G~~g~GKt~~v~~~~~~ 752 (1513)
+..+..+.|+||+||||||+.+.+...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 345677899999999999999877653
No 467
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=83.01 E-value=0.53 Score=49.00 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=18.4
Q ss_pred eEEEeccCCCCchHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
-|+++|++|+||||+++.|.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998885
No 468
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.00 E-value=0.52 Score=49.84 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.6
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4699999999999999999864
No 469
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=82.91 E-value=0.66 Score=57.58 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=33.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHhHhhhhcccccccceeEEEecCCCCCh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITM 1403 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~l~~~~~~~~~~~~~~~~~inp~~~t~ 1403 (1513)
..+++.|.||||||++++.+...+-.-.. ...+.++.|+||...+
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~s-------P~ev~lilIDpKg~eL 259 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKST-------PSEARLIMIDPKMLEL 259 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCC-------TTTEEEEEECSSSHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCC-------CcceEEEEeCCChhhh
Confidence 57899999999999999998776542110 1147899999997543
No 470
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.83 E-value=0.59 Score=52.99 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=23.2
Q ss_pred hcceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1350 VRHGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1350 ~~~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
...-++|+||+||||||+...++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987654
No 471
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.79 E-value=0.55 Score=56.63 Aligned_cols=27 Identities=33% Similarity=0.256 Sum_probs=24.0
Q ss_pred cceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
..-|+++|++||||||++..|+..+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999988865
No 472
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=82.79 E-value=0.52 Score=56.94 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCccchHHHHHHhcCEEEEEEcCCCCC
Q psy4730 663 GAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPT 698 (1513)
Q Consensus 663 ~~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~~~ 698 (1513)
..+.||+|||||++++.||+.+|.+++.++|+...+
T Consensus 53 iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~ 88 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcc
Confidence 345799999999999999999999999999975543
No 473
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=82.75 E-value=0.55 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.4
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999998853
No 474
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=82.73 E-value=0.54 Score=49.70 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=19.5
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
--|+++|++|+||||+++.|..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999998853
No 475
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=82.72 E-value=0.82 Score=53.87 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.6
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|+.
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCS
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999864
No 476
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=82.67 E-value=0.56 Score=48.70 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.3
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
--|+++|++|+||||+++.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999988863
No 477
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=82.67 E-value=0.52 Score=48.88 Aligned_cols=25 Identities=44% Similarity=0.634 Sum_probs=21.1
Q ss_pred CccceeccCCCccchHhHHHHHhcc
Q psy4730 729 DVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 729 ~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
+..+.|+|++|||||++.+.+...+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999998876654
No 478
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=82.67 E-value=0.59 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.2
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|++.|++||||||..+.|++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46889999999999999999998864
No 479
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=82.56 E-value=1.4 Score=48.14 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHHHHhcceEEEeccCCCCchHHHHH
Q psy4730 1320 EQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQT 1370 (1513)
Q Consensus 1320 ~~i~~~~~~~~l~~~~~~~~k~~qL~~~~~~~~gvilvG~tgsGKTt~~~~ 1370 (1513)
..+.+.+.+.|+..-..+...++. .+..++.+++.+|||||||.++-.
T Consensus 34 ~~l~~~l~~~~~~~~~~~Q~~~i~---~~~~~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 34 KKTLKGLQEAQYRLVTEIQKQTIG---LALQGKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp HHHHHHHHHTTCCBCCHHHHHHHH---HHHTTCCEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHH---HHhCCCCEEEEeCCCCcHHHHHHH
Confidence 455666667777544444444443 234567899999999999997654
No 480
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=82.54 E-value=0.56 Score=49.36 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.7
Q ss_pred ceEEEeccCCCCchHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
-=|+|+|++|+||||+++.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 379999999999999998775
No 481
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=82.54 E-value=0.58 Score=55.41 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred eEEEeccCCCCchHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSL 1375 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~ 1375 (1513)
-++|+||+||||||++.++.-++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999998765
No 482
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=82.40 E-value=0.46 Score=49.07 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=19.9
Q ss_pred cceeccCCCccchHhHHHHHhcc
Q psy4730 731 PMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 731 ~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
.++|+|++|||||++.+.+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999887654
No 483
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=82.39 E-value=0.57 Score=49.91 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.4
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+++|++|+||||+++.|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999998853
No 484
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=82.35 E-value=0.57 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.3
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+|+|++|+||||+++.|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998853
No 485
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.33 E-value=0.57 Score=49.40 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=19.1
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|+|+|++|+||||+++.|..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 689999999999999998864
No 486
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=82.32 E-value=0.52 Score=49.37 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=19.0
Q ss_pred ceEEEeccCCCCchHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
.-|+++|++|+||||+++.|.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999999885
No 487
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=82.31 E-value=0.59 Score=57.10 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.9
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
..+-|+||+||||||++++|+..+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 4788999999999999999987653
No 488
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=82.30 E-value=0.59 Score=49.29 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.6
Q ss_pred eEEEeccCCCCchHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~ 1372 (1513)
-|+++|++|+||||+++.|.
T Consensus 18 ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 59999999999999999886
No 489
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.28 E-value=0.42 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.3
Q ss_pred cceEEEeccCCCCchHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
..-|+++|++|+||||+++.|.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999998774
No 490
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=82.28 E-value=0.59 Score=49.32 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.9
Q ss_pred eEEEeccCCCCchHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
-|+++|++|+||||+++.|..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999998863
No 491
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=82.25 E-value=0.56 Score=48.80 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=19.0
Q ss_pred ceEEEeccCCCCchHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLA 1372 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~ 1372 (1513)
.-|+++|++|+||||+++.|.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 468999999999999999886
No 492
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=82.23 E-value=0.59 Score=49.20 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.5
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
.-|+|+|++|+||||+++.|..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999998853
No 493
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=82.13 E-value=0.59 Score=49.83 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.0
Q ss_pred cceEEEeccCCCCchHHHHHHHH
Q psy4730 1351 RHGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1351 ~~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
..-|+|+|++|+||||+++.|..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCcCHHHHHHHHHh
Confidence 34699999999999999998863
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.12 E-value=0.51 Score=52.21 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.9
Q ss_pred eEEEeccCCCCchHHHHHHHHHHH
Q psy4730 1353 GLMVVGESFGGKTTAYQTLADSLT 1376 (1513)
Q Consensus 1353 gvilvG~tgsGKTt~~~~L~~~~~ 1376 (1513)
-|.+.|++||||||..+.|++.+.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998874
No 495
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=82.12 E-value=0.6 Score=49.20 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.3
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
--|+++|++|+||||+++.|..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHh
Confidence 3699999999999999988863
No 496
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.08 E-value=0.6 Score=49.47 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.6
Q ss_pred ceEEEeccCCCCchHHHHHHHH
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLAD 1373 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~ 1373 (1513)
--|+++|++|+||||+++.|..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998864
No 497
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=82.08 E-value=0.62 Score=57.83 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=23.6
Q ss_pred ceEEEeccCCCCchHHHHHHHHHHHh
Q psy4730 1352 HGLMVVGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1352 ~gvilvG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
.-|+|+|.|||||||+.+.|++.++.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46999999999999999999998864
No 498
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=82.00 E-value=0.81 Score=54.64 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.5
Q ss_pred cceEEE--eccCCCCchHHHHHHHHHHHh
Q psy4730 1351 RHGLMV--VGESFGGKTTAYQTLADSLTD 1377 (1513)
Q Consensus 1351 ~~gvil--vG~tgsGKTt~~~~L~~~~~~ 1377 (1513)
...++| +||+|+||||+++.+++.+..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 346788 899999999999999877653
No 499
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=81.88 E-value=1 Score=52.42 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=26.0
Q ss_pred CCCCCCCCCCccchHHHHHHhcCEEEEEEcCCC
Q psy4730 664 APEGPAGTGKTETSKDLAKAVAKQCIVFNCSDR 696 (1513)
Q Consensus 664 ~~~G~~gtGKte~vk~La~~lG~~~~v~ncs~~ 696 (1513)
.+.||+|+|||++.+.||+.+| +.++++++-
T Consensus 11 ~I~GptgSGKTtla~~La~~l~--~~iis~Ds~ 41 (340)
T 3d3q_A 11 VIVGPTASGKTELSIEVAKKFN--GEIISGDSM 41 (340)
T ss_dssp EEECSTTSSHHHHHHHHHHHTT--EEEEECCSS
T ss_pred EEECCCcCcHHHHHHHHHHHcC--Cceeccccc
Confidence 4679999999999999999999 456777654
No 500
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=81.86 E-value=0.57 Score=50.06 Aligned_cols=27 Identities=22% Similarity=0.537 Sum_probs=22.6
Q ss_pred cCCccceeccCCCccchHhHHHHHhcc
Q psy4730 727 QNDVPMMFVGPTGTGKSTIVLNLLLNL 753 (1513)
Q Consensus 727 ~~~~~~ll~G~~g~GKt~~v~~~~~~~ 753 (1513)
..+..+.|+||+|||||++++.+...+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 356778899999999999999887654
Done!