RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4730
(1513 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 752 bits (1944), Expect = 0.0
Identities = 184/645 (28%), Positives = 317/645 (49%), Gaps = 31/645 (4%)
Query: 75 TTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNA 134
T + K + E ++ +W + + D E + +
Sbjct: 2 TRHHHHHHGGGDYKDDDDKGGGKVPVEEEIQDLKAVWVELSNTWQEIDSLKETAWSAIIP 61
Query: 135 DEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKLESFRKEVPILQCISNPGMEERH 194
+++ + ++L L ++ + ++ ++ + K I+ + + +++RH
Sbjct: 62 RKVRKSLEDTLQKLKNLPNRIRQYSAFDHA----QNLIKIYLKGNAIITDLHSEAIKDRH 117
Query: 195 WKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWS 254
WKIL L + + +L ++ D + EV +A E L + L + W+
Sbjct: 118 WKILKKRLNTNWIITE-LTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGVREFWT 176
Query: 255 DIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINM 314
++LD+V Y+ +++G D++ L +H+ M+ SPY K FE E W+ +L +
Sbjct: 177 TLELDLVNYQRKC-KLVRGWDDLFNKLAEHLNSISAMKMSPYYKVFEEEANHWDDRLNKV 235
Query: 315 QDILDIWLQVQGTWMYLEPIFS-SEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQ 373
+ +LD+W+ VQ W+YLE IFS S DI + +P ES FK+++ + I+ V+ P IL+
Sbjct: 236 RSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIAILKKVSGAPLILE 295
Query: 374 ATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRV 433
+E + + + + +L +QK L +YLE++R F RF+F+ +++LLEI+ +KD +++
Sbjct: 296 VLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKI 355
Query: 434 QPHLKKIFEGINLLEYSD-SLEIIGMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLM 492
Q H +K+F G+ L D IIGM S EGE V I + + +WL VE M
Sbjct: 356 QKHFRKMFAGLANLTLDDEKTTIIGMSSAEGETVTFKKPISIANG-PKIHEWLTMVESEM 414
Query: 493 IKSLQDICMMALGAYYKSE------RVVWVTKWPGMVVICVSSITWTAEVEKAIQGRK-- 544
+L + +L + + + WV +P +V+ S I W+ +V++A+ G
Sbjct: 415 KSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQ 474
Query: 545 -------LDAMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLVESK- 596
L ++ + ++ + V L +R LI VH ++VV L + K
Sbjct: 475 QSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKN 534
Query: 597 VTQVEDFAWMSQLRYY------NVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCY 650
+T +DF W+ +RYY NV + + + M T YG+EYLG +RLV TPLTDRCY
Sbjct: 535 LTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFYYGFEYLGIGERLVQTPLTDRCY 594
Query: 651 RTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
TL AL+ +GG P GPAGTGKTET K L + + +VF C +
Sbjct: 595 LTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDE 639
Score = 567 bits (1463), Expect = e-170
Identities = 168/415 (40%), Positives = 259/415 (62%), Gaps = 32/415 (7%)
Query: 1123 GAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKF-MFEGTEISLNPTSMIFITMNP 1181
GAW CFDEFNR+E +LS V+QQ+Q+IQ+A K+ + G ISL+ IF+TMNP
Sbjct: 657 GAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP 716
Query: 1182 GYAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQL 1241
GYAGR+ LPDNLK LFRS+AM+ PD MI ++ LYS GF+ A++LA KIV +KLC EQL
Sbjct: 717 GYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQL 776
Query: 1242 SSQSHYDYGMRAVKSVLNAAGSLKIKYPEKD--------------------EFVIVLRAI 1281
S+QSHYD+G+RA+KSVL +AG +K K E ++L +I
Sbjct: 777 SAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSI 836
Query: 1282 IDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKI 1341
D +PK + D+PL + D+FPG +L P D+L ++I+ +R+ ++EKI
Sbjct: 837 NDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKI 896
Query: 1342 IQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI 1401
+Q+++++ + HG+M+VG S GGKTT+++ +++ + K+ +++PK+I
Sbjct: 897 LQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQ--------VDNIKSEAHVMDPKAI 948
Query: 1402 TMGQLYGEFDSASHEWRDGILAKTFREMAVST---TPDRKWIMFDGPIDAVWIENMNTVL 1458
T QL+G D + EW DG+ T R + + + R WI+FDG +D W+EN+N++L
Sbjct: 949 TKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLL 1008
Query: 1459 DDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTTF 1513
DDNK L L NGE + + N + ++FE ++L++A+ AT+SR GM++F + ++
Sbjct: 1009 DDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMVWFSEEILTTQMI 1063
Score = 211 bits (539), Expect = 5e-55
Identities = 52/230 (22%), Positives = 102/230 (44%), Gaps = 21/230 (9%)
Query: 891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTM----NT 946
D++N+P + YG Q + +RQ+++ + T + L I ++ A P
Sbjct: 1380 CDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQ 1439
Query: 947 ITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSES 1006
+T R LRH I+ +D + ++L++I+ + ++ + N+ A YSES
Sbjct: 1440 LTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALM--KLLPNLRSFADNLTDAMVEFYSES 1497
Query: 1007 TKVFLPIPSKSHYVFNLRDFAKVIMGLTQ-LPASHCKAPDKMYKLWTHEILRVFSDRLVD 1065
K F P ++HY+++ R+ ++ L + + + + +LW HE LR+F DRLV+
Sbjct: 1498 QKRFTP-DIQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVE 1556
Query: 1066 EADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFL 1115
+K+ + + + LK R + + N+L
Sbjct: 1557 TEEKEWTDKKIDEVALKHFPSVNLDALK-------------RPILYSNWL 1593
Score = 110 bits (277), Expect = 2e-24
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 700 PPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYL 759
+ D++IPT T ++ +L P++ GP G+GK+ + + L +
Sbjct: 1275 THKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAF--PDFE 1332
Query: 760 PNIINFSARTSSNITQEMIMAKLDRRR----KGVYGPA-MGKKYIVFIAGSLKIKYPEKD 814
+NFS+ T+ + + + +R + V P +GK +VF +I P D
Sbjct: 1333 VVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCD---EINLPSTD 1389
Query: 815 EF 816
++
Sbjct: 1390 KY 1391
Score = 106 bits (267), Expect = 3e-23
Identities = 23/81 (28%), Positives = 47/81 (58%)
Query: 811 PEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAK 870
+ E ++L +I D +PK + D+PL + D+FPG +L P D+L ++I+ +
Sbjct: 824 YCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQ 883
Query: 871 RNAQATDWYIEKIIQVYEMIL 891
R+ ++EKI+Q+++++
Sbjct: 884 RHLVTKQEWVEKILQLHQILN 904
Score = 36.0 bits (83), Expect = 0.14
Identities = 52/331 (15%), Positives = 108/331 (32%), Gaps = 83/331 (25%)
Query: 1179 MNPGYAGRTELPDNLKVLFRSVAMMVPDYAMIGEI-SLYSMGFQN--------AKILAEK 1229
P AGR +L + + P + + +I ++ A L +
Sbjct: 1430 NPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDA 1489
Query: 1230 IVYTYKLCSEQL--SSQSHYDYGMRA----VKSVLNAAGSLK------------------ 1265
+V Y ++ Q+HY Y R +++L A ++
Sbjct: 1490 MVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRL 1549
Query: 1266 -----IKYPEKDEFVIVLRAIIDVNMPKFLVQDL--PLFIGIYKDLFPGIELPPTDRDEL 1318
++ EK+ + + + P + L P+ + + P +R +L
Sbjct: 1550 FQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLT--KDYQ--PVNRSDL 1605
Query: 1319 IEQIKINLAKRNAQATD----------WYIEKIIQVYEMILVRHGLMVVGESFGGKTTAY 1368
E +K L + D +I +I +V+ + +++G S GGK+
Sbjct: 1606 REYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQ--PQGHALLIGVSGGGKS--- 1660
Query: 1369 QTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 1428
L+ A + G I +I + Y ++ D L +
Sbjct: 1661 -----VLSRFVA--------WMNGLSIY---TIKVNNNYKS-----SDFDDD-LRMLLKR 1698
Query: 1429 MAVSTTPDRKWIMFDGPI-DAVWIENMNTVL 1458
+I + + ++ ++E MNT+L
Sbjct: 1699 AGCKEEK-ICFIFDESNVLESSFLERMNTLL 1728
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 668 bits (1725), Expect = 0.0
Identities = 144/664 (21%), Positives = 274/664 (41%), Gaps = 26/664 (3%)
Query: 54 EEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPF----DQ 109
E ++ ++E L D K R ++ E L + + + + +
Sbjct: 21 EYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIADKHNM 80
Query: 110 LWSIILEFRESSDL------WMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKM 163
L E E S L G + + + + +L ++ + K
Sbjct: 81 LGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKT 140
Query: 164 VNDLTRSKLESFRKEVPI-LQCISNPGMEERHWKILSDELGQDITP--NDQTSLKNMLDL 220
+ F + + +P + K++ + + P + +
Sbjct: 141 YLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAW 200
Query: 221 GIRNILPKLEEVSLS-ASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQV 279
++ S E + +SLN++ W + + +V+ + +G +++ D ++
Sbjct: 201 PLQGWQATFGGGDHPPKSDEFVIEKSLNRIKKFWKEAQYEVIEHS-SGLKLVREWDVLEQ 259
Query: 280 MLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIF-SSE 338
+ + +M+ S Y K FE + ESKL + +I W++VQ W+ L I +
Sbjct: 260 ACKEDLEELVSMKASNYYKIFEQDCLDLESKLTKLSEIQVNWVEVQFYWLDLYGILGENL 319
Query: 339 DIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGL 398
DI +P E+ FK++ +K I + ++ + + L++I+ L
Sbjct: 320 DIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVIHIPNFDTTLKLTIDSLKMIKSSL 379
Query: 399 NDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGM 458
+ +LE++R FPRF+FL ND+LL+I+ K +V +KK+F I + + + I G+
Sbjct: 380 STFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESIIFLED-FITGV 438
Query: 459 ISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKSLQDICMMALGAYYKSERV-VWVT 517
S+EGE + L+ I ++WL ++ + S+ LG + V V+
Sbjct: 439 RSVEGEVLNLNEKIEL-KDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEVVVS 497
Query: 518 KWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKSVKQIDIMVIKVRGKLLMSERITICA 577
K+ ++ + + WT VEK +Q + + +I ++ K+ K + + I A
Sbjct: 498 KYIFQAILLSAQVMWTELVEKCLQTNQFSKYWKEVDMKIKGLLDKLN-KSSDNVKKKIEA 556
Query: 578 LIVIDVHAKEVVASLVESKVTQVEDFAWMSQLRYY------NVNNLVNVCMITTTVQYGY 631
L+V +H V+ L + W ++Y + N V + +QY +
Sbjct: 557 LLVEYLHFNNVIGQLKNCSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKF 616
Query: 632 EYLGNSDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKDLAKAVAKQCIVF 691
EY+G +RL+ TPL + TL +L GG GPAGTGKTET K + + + +VF
Sbjct: 617 EYIGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVF 676
Query: 692 NCSD 695
NC D
Sbjct: 677 NCDD 680
Score = 646 bits (1668), Expect = 0.0
Identities = 128/392 (32%), Positives = 207/392 (52%), Gaps = 15/392 (3%)
Query: 1123 GAWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPG 1182
GAW CFDEFNR++ +VLS V+ +Q IQ E L+P + +FIT+NPG
Sbjct: 698 GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG 757
Query: 1183 YAGRTELPDNLKVLFRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLS 1242
Y GR+ELP+NLK FR +M P I E+ L MGF+++K LA KIV+ +L S + S
Sbjct: 758 YNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCS 817
Query: 1243 SQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYK 1302
S +HY +G+R +K VL L ++ E ++ V+ ++ V +P D +F
Sbjct: 818 SMNHYHFGLRTLKGVLRNCSPLISEFGEGEK--TVVESLKRVILPSLGDTDELVFKDELS 875
Query: 1303 DLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFG 1362
+F P + +++ +K + ++ +++K +Q Y M + L++VG++
Sbjct: 876 KIFDSAGTPL-NSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGC 934
Query: 1363 GKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGIL 1422
GKT ++T+ D++ +I+ K +T LYG A+ EWRDG+
Sbjct: 935 GKTATWKTVIDAMAI--------FDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLF 986
Query: 1423 AKTFREMAVSTT----PDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTM 1478
R + T R W++FD +D ++E MN+VLDDNK L L NGE + +
Sbjct: 987 TSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNF 1046
Query: 1479 NLIFECENLEFASPATVSRVGMIYFELKCISW 1510
++FE +NL+ +PAT++R G+++F S
Sbjct: 1047 RILFETDNLDHTTPATITRCGLLWFSTDVCSI 1078
Score = 216 bits (551), Expect = 2e-56
Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 20/230 (8%)
Query: 891 LDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPT----MNT 946
D++N+P+ + YG+Q V LRQ+++ + + V + I + A P
Sbjct: 1342 CDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIP 1401
Query: 947 ITGRLLRHMNIISIDSFNEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSES 1006
++ R RH I+ + + +LS+I+ F ++ A+ H+Y
Sbjct: 1402 MSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIF--KLVPEFRSYTEPFARASVHLY-NE 1458
Query: 1007 TKVFLPIPSKSHYVFNLRDFAKVIMGLTQ-LPASHCKAPDKMYKLWTHEILRVFSDRLVD 1065
K +SHY+F+ R+ +++ G+ + + + +LW +E R+F+DRLV
Sbjct: 1459 CKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVG 1518
Query: 1066 EADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFL 1115
+K S ++ E + + ++ + SL F L
Sbjct: 1519 VKEKNSFEQLLY------------ETVDKYLPNQDLGNISSTSLLFSGLL 1556
Score = 114 bits (287), Expect = 2e-25
Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 803 AGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIE 862
L ++ E ++ V+ ++ V +P D +F +F P + +++
Sbjct: 836 CSPLISEFGEGEK--TVVESLKRVILPSLGDTDELVFKDELSKIFDSAGTPL-NSKAIVQ 892
Query: 863 QIKINLAKRNAQATDWYIEKIIQVYEMIL 891
+K + ++ +++K +Q Y M
Sbjct: 893 CLKDAGQRSGFSMSEEFLKKCMQFYYMQK 921
Score = 105 bits (264), Expect = 8e-23
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 700 PPNLRPSDLIIPTNVTCMQNFFINLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYL 759
+ D++IPT T L + ++ GP G+GK+ I+ N L N Y
Sbjct: 1238 AHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNS--SLYD 1295
Query: 760 PNIINFSARTSSNITQEMIMAKLD--RRRKGVYG--PAMGKKYIVFI 802
INFS T++ + + KG+ + K ++F
Sbjct: 1296 VVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342
Score = 56.4 bits (136), Expect = 8e-08
Identities = 37/286 (12%), Positives = 92/286 (32%), Gaps = 55/286 (19%)
Query: 1163 EGTEISLNPTSMIFITMNPGYAGRTELPDNLKVLFRSVAMMVPDYAMIGEI--SLYSMGF 1220
E +++ ++ P GR + + + + P + +I Y F
Sbjct: 1376 ENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIF 1435
Query: 1221 Q-------NAKILAEKIVYTYKLCSEQLS--SQSHYDYGMRAVKSVLNAAGSLK------ 1265
+ + A V+ Y C + S QSHY + R + ++ +
Sbjct: 1436 KLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQ 1495
Query: 1266 ---------------------IKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDL 1304
+ EK+ F +L +D +P + ++ ++
Sbjct: 1496 TLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSG- 1554
Query: 1305 FPGIELPPTDRDELIEQIKINLAKRNAQATD----------WYIEKIIQVYEMILVRHGL 1354
++ ++ +L+ I+ + + +I +I + + + + +
Sbjct: 1555 LLSLDFKEVNKTDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQV--QGHM 1612
Query: 1355 MVVGESFGGKTTAYQTLAD----SLTDIAAKKSATMKEFKTGYKII 1396
M++G S GKT + +A + + + + +F K
Sbjct: 1613 MLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSNLSDFDMILKKA 1658
Score = 32.5 bits (74), Expect = 1.6
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSKDKYLPNII 763
++ VG G GK+ ++ ++ N++
Sbjct: 926 LILVGKAGCGKTATWKTVIDAMAIFDGHANVV 957
Score = 31.3 bits (71), Expect = 3.6
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 637 SDRLVITPLTDRCYRTLMSALKLHLGGAPEGPAGTGKTETSKD-LAKAVAKQCIVFNCS 694
D ++ T T + + L G GP G+GKT + L + + N S
Sbjct: 1244 PDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS 1302
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.4 bits (187), Expect = 6e-14
Identities = 110/748 (14%), Positives = 225/748 (30%), Gaps = 247/748 (33%)
Query: 265 DTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQV 324
+TG + Q D + V D ++ F+ +D+ D
Sbjct: 10 ETGEHQYQYKDILSVFEDA------------FVDNFD------------CKDVQD----- 40
Query: 325 QGTWMYLEPIFSSE---DIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDML 381
+ I S E I+ S + W ++K ++Q +E++L
Sbjct: 41 -----MPKSILSKEEIDHIIMSKDAVSGTLRL---FW----TLLSKQEEMVQKF-VEEVL 87
Query: 382 -KNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPL-RVQPH--L 437
N+ ++ I+ R++ + L ND ++ + K + R+QP+ L
Sbjct: 88 RINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFA--KYNVSRLQPYLKL 140
Query: 438 KKIFEGINLLEYSDSLEII--GMISLEGEKVALSGLIRPNDAKGLVEKWLQQVEDLMIKS 495
++ LLE + ++ G++ G SG K + +
Sbjct: 141 RQ-----ALLELRPAKNVLIDGVL---G-----SG------------KTW-----VALDV 170
Query: 496 LQD---ICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLDAMLDKS 552
C M + W+ + + V + +Q KL +D +
Sbjct: 171 CLSYKVQCKMDFKIF-------WLN---------LKNCNSPETVLEMLQ--KLLYQIDPN 212
Query: 553 VKQ---------IDIMVIKVRGKLLMSERITICALIVID-VHAKEVVAS-------LVES 595
+ I I+ + L+ + L+V+ V + + L+ +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 596 KVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNS-DRL-----VITPLTDRC 649
+ QV DF + + ++++ +YL L P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR---- 328
Query: 650 YRTLMS--ALKLHLGGAPEGPAGTG--KTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRP 705
+S A + +G A K L + + + L P
Sbjct: 329 ---RLSIIAESIR-----DGLATWDNWKHVNCDKLTTII-ESSL-----------NVLEP 368
Query: 706 SDLIIPTNVTCMQNFFINLY-LQNDVPMMFVGPTGTGKSTIVLNLL-LNLSKDKYLPNII 763
++ + F L + TI+L+L+ ++ K
Sbjct: 369 AE---------YRKMFDRLSVFPPSAHI----------PTILLSLIWFDVIKS------- 402
Query: 764 NFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVL-RA 822
+++ KL + P I I LK+K + L R+
Sbjct: 403 ----------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA----LHRS 448
Query: 823 IID-VNMPKFLVQD--LPLFIGIYKDLFPG---IELPPTDRDELIEQIKINL----AKRN 872
I+D N+PK D +P ++ Y G + +R L + ++ K
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 873 AQATDW------------------YIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQI 914
+T W YI YE +++ + ++ L +I
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-------------LDFLPKI 555
Query: 915 IDHKHLYDFQTVTRVDLV---DIIYITA 939
++ + + R+ L+ + I+ A
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 76.4 bits (187), Expect = 6e-14
Identities = 100/710 (14%), Positives = 209/710 (29%), Gaps = 238/710 (33%)
Query: 161 CKMVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDI--TPNDQTSLKNML 218
CK V D+ +S ILS E I + + + +
Sbjct: 35 CKDVQDMPKS--------------------------ILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 219 DLGIRNILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGT---D 275
+L K EE+ +E L + +++ + P T YI Q +
Sbjct: 69 WT----LLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYN 121
Query: 276 EIQVMLDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQG------TWM 329
+ QV ++ R Q L+ ++ + + G TW+
Sbjct: 122 DNQVFAKYNVSRLQ-------------PYLKLRQALLELRP--AKNVLIDGVLGSGKTWV 166
Query: 330 YLEPIFSSEDIMRQMPEE-----SRNFKTVDQIWKTIM-LFVNKDPHILQATEMEDMLKN 383
L+ + S + +M + +N + + + + + L DP+ ++ +K
Sbjct: 167 ALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK- 224
Query: 384 FNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEG 443
L + IQ L L+ K + LL +L ++ K +
Sbjct: 225 -----LRIHSIQAELRRLLKSKP--YEN-------CLL-VLLNVQNA--------KAWNA 261
Query: 444 INL----------LEYSDSL--EIIGMISLEGEKVALSGLIRPNDAKGLVEKWL-QQVED 490
NL + +D L ISL+ + L+ P++ K L+ K+L + +D
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQD 317
Query: 491 L---MIK-SLQDICMMALGAYYKSERVVWVTKWPGMVVICVSSITWTAEVEKAIQGRKLD 546
L ++ + + + + + + W W K + KL
Sbjct: 318 LPREVLTTNPRRLSI--IAESIRDGLATW-DNW------------------KHVNCDKLT 356
Query: 547 AMLDKSVKQIDIMVIKVRGKLLMSERITICALIVIDVHAKEVVASLV--ESKVTQVEDFA 604
+++ S+ ++ + ++ H ++ SL+ + + V
Sbjct: 357 TIIESSLNVLE--------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV- 407
Query: 605 WMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRLVITPLTDRCYRTLMSALKLHLGGA 664
VN L ++ + E + I + L + LH
Sbjct: 408 ---------VNKLHKYSLV---EKQPKES-----TISIPSIYLELKVKLENEYALH---- 446
Query: 665 PEGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTN----------- 713
+ + D P DLI P
Sbjct: 447 ---------------------RSIV-----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 714 ---------VTCMQNFFINL-YLQNDVPMMFVGPTGTGKSTIVLNLLLNLSK-------- 755
+T + F++ +L+ + +I LN L L
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKI--RHDSTAWNASGSI-LNTLQQLKFYKPYICDN 537
Query: 756 ----DKYLPNIINFSARTSSN--------ITQEMIMAKLDRRRKGVYGPA 793
++ + I++F + N + + +MA+ + ++ A
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE----DEAIFEEA 583
Score = 71.0 bits (173), Expect = 3e-12
Identities = 109/689 (15%), Positives = 205/689 (29%), Gaps = 177/689 (25%)
Query: 581 IDVHAKEVVASLVES-----KVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYL- 634
K++++ ++ V+D S L +++++ + + L
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 635 --GNS--DRLVITPLTDRCYRTLMSALKLHLGGAPEGPAG-TGKTETSKDLAKAVAKQCI 689
+ V L Y+ LMS +K P+ T +D
Sbjct: 73 SKQEEMVQKFVEEVLRIN-YKFLMSPIKTE----QRQPSMMTRMYIEQRD---------R 118
Query: 690 VFNCSDRPTFPPNLRPSDLIIPTNVTCMQNFF-INLYLQNDVPMMFV---GPTGTGKSTI 745
++N D F NV+ +Q + + L P V G G+GK+ +
Sbjct: 119 LYN--DNQVFAKY----------NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 746 VLNLLLNLSKDKYLPN-I--INFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFI 802
L++ L+ + I +N S EM + KL + + +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQ--------IDPNWTSRS 217
Query: 803 AGSLKIKYPEKDEFVIVLRAIIDVNMPKFL-----VQDLPLFIGIYKDLFPGIELPPTDR 857
S IK + R + L VQ+ + + F
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-----NAFNL-------- 264
Query: 858 DELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDH 917
KI L R Q TD+ + + + E LL + +D
Sbjct: 265 -----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV------KSLLLKYLDC 313
Query: 918 KHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEATLSKIFTSVLD 977
+ Q + R + P +I +R + + D++ K T++++
Sbjct: 314 R----PQDLPRE-------VLTTNPRRLSIIAESIRDG-LATWDNWKHVNCDK-LTTIIE 360
Query: 978 WHFSKGFADSIVKLSKNIVAATFH---VYSESTKVFLPIPSKSHYVFNL----RDFAKVI 1030
S+ L F V+ S IP+ + +L + V+
Sbjct: 361 --------SSLNVLEPAEYRKMFDRLSVFPPSAH----IPTI---LLSLIWFDVIKSDVM 405
Query: 1031 MGLTQL-PASHCKAPDKMYKLWTHEILRVFSDRLVDEADK-QSLLD----MMKYACQNII 1084
+ + +L S + K + I +L +E +S++D + ++I
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 1085 GTKMDEFLKNKI------TDKTISADDLRSLFFG-NFLGNTIIFPG-AWACFDEFNRIEL 1136
+D++ + I + R +F FL I AW
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA--------- 516
Query: 1137 EVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMN-PGYAGR-TELPDNLK 1194
L T+ +LK ++ +I N P Y + D L
Sbjct: 517 ----------SGSILNTLQQLKF--YKP-----------YICDNDPKYERLVNAILDFLP 553
Query: 1195 ----VLFRS-------VAMMVPDYAMIGE 1212
L S +A+M D A+ E
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 69.5 bits (169), Expect = 8e-12
Identities = 92/637 (14%), Positives = 188/637 (29%), Gaps = 229/637 (35%)
Query: 17 IEKSVTGNTTEEFKK----AHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQK 72
+ KS+ + EE + L S ++F + ++L+
Sbjct: 41 MPKSIL--SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF---------VEEVLRI 89
Query: 73 DRT-TARQINEEQELLKMVRTNY-ETVDEM-----------LERLEPFDQLWSIILEFRE 119
+ I EQ M+ Y E D + + RL+P+ +L +LE R
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 120 SSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGC-KMVNDLTRSKLESFRKE 178
+ ++ ++G + G K + S++
Sbjct: 150 AKNVLIDG----------------V--------------LGSGKTW--VALDVCLSYK-- 175
Query: 179 VPILQCISNPGMEERHWKILSDELGQDITPNDQTSLKNMLDLGIRNILPKLEEVSLSASK 238
+QC + + W L+ L +P L+ + L + I P S +S
Sbjct: 176 ---VQCKMDFKI---FW--LN--LKNCNSPETV--LEMLQKL-LYQIDPNWTSRSDHSSN 222
Query: 239 EA----ELSQSLNKMVTEWS---------DIK-------LDV-----VPYRDTG-TYIIQ 272
+ L +++ +++ ++ + R T +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 273 GTDEIQVMLDDHI----------------------LRAQTMRGSPY-IKPFETEMEAWES 309
+ LD H L + + +P + ES
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII------AES 336
Query: 310 KLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDP 369
+ + D W V I SS +++ P E R +++ + +F
Sbjct: 337 -IRDGLATWDNWKHVN-CDKLTTIIESSLNVLE--PAEYR------KMFDRLSVF-PPSA 385
Query: 370 HI-----------LQATEMEDMLKNFNKCNLM---------------LELIQKGLNDY-L 402
HI + +++ ++ +K +L+ LEL K N+Y L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 403 EKK---RLFFPRFFFLSNDELLEILSETKDPLR------VQPHLKKIFEGINLLEYSDSL 453
+ P+ F + L + HLK I E+ + +
Sbjct: 446 HRSIVDHYNIPKTFDSDD--------LIPPYLDQYFYSHIGHHLKNI-------EHPERM 490
Query: 454 EIIGMISLE----GEKVALSGL---------------------IRPNDAK-----GLVEK 483
+ M+ L+ +K+ I ND K +
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 484 WLQQVEDLMIKS-LQDICMMAL-----GAYYKSERVV 514
+L ++E+ +I S D+ +AL + ++ + V
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 61.8 bits (149), Expect = 2e-09
Identities = 94/622 (15%), Positives = 189/622 (30%), Gaps = 176/622 (28%)
Query: 746 VLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGS 805
V ++ ++ + + +II S T + L ++ + V F+
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSG--TLRLFWTLLSKQEEMVQ---------KFVEEV 86
Query: 806 LKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIE-LPPTD--RDELIE 862
L+I Y F+ + I ++ + +I L+ + + R +
Sbjct: 87 LRINYK----FL--MSPIKTEQRQPSMMTRM--YIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 863 QIKINLAKRNAQATDWYIEKIIQVYEM-----------ILDD-------------LNMPQ 898
+++ L + K + + + + LN+
Sbjct: 139 KLRQAL--LELRP-----AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 899 KETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNII 958
+ +L + + D +R D I + +++I L R ++
Sbjct: 192 CNS-----PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-----IHSIQAELRR---LL 238
Query: 959 SIDSFNEATLSKIFTSVLD--WHFS--KGFADS--IVKLSKNIVAATFHVYSESTKVFLP 1012
+ L VL + F S I+ ++ F + +T + L
Sbjct: 239 KSKPYENCLL------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 1013 IPSKSHYVFNLRD----FAKVI-MGLTQLPASHCK-APDKMYKLWTHEILRVFSDRLVDE 1066
S + + K + LP P ++ + E +R
Sbjct: 293 HHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA--ESIRDGLATW--- 344
Query: 1067 ADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWA 1126
D K+ + + T ++ L + + R +F L +FP
Sbjct: 345 -------DNWKHVNCDKLTTIIESSLNV------LEPAEYRKMFDR--LS---VFP---- 382
Query: 1127 CFDEFNRIELEVLSVV-----AQQVQSI--QLATIAKLKKFMFEGTEISLNPTSMIFITM 1179
+ I +LS++ V + +L + ++K E T IS+ I++ +
Sbjct: 383 --PSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIP---SIYLEL 435
Query: 1180 NPGYAGRTEL------PDNLKVLFRSVAMMVP--D---YAMIG----------EISLYSM 1218
L N+ F S ++ P D Y+ IG ++L+ M
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 1219 GFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGSLKIKYPEKDEFVIVL 1278
F + + L +KI H A S+LN LK Y
Sbjct: 496 VFLDFRFLEQKIR--------------HDSTAWNASGSILNTLQQLK-FY---------- 530
Query: 1279 RAIIDVNMPKF--LVQDLPLFI 1298
+ I N PK+ LV + F+
Sbjct: 531 KPYICDNDPKYERLVNAILDFL 552
Score = 56.8 bits (136), Expect = 6e-08
Identities = 75/483 (15%), Positives = 155/483 (32%), Gaps = 110/483 (22%)
Query: 1076 MKYACQNIIGTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIE 1135
+Y ++I+ D F+ N K + D +S+ + + I+ D +
Sbjct: 14 HQYQYKDILSVFEDAFVDN-FDCKDVQ-DMPKSILSKEEIDHIIMSK------DAVSGTL 65
Query: 1136 LEVLSVVAQQVQSIQLATIAKLKK---FMFEGTEISLNPTSMIFITMNPGYAGRTELPDN 1192
+++++Q + +Q L+ F+ + SM+ Y + + N
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM----YIEQRDRLYN 121
Query: 1193 LKVLFRSVAMMVPDYAMIGEI--SLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYG 1250
+F V ++ +L + + AK + ++ G
Sbjct: 122 DNQVFAK--YNVSRLQPYLKLRQALLEL--RPAKNV---LID-----------------G 157
Query: 1251 MRAV-KSVLNAAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDL-PLFIGIYKDLFPGI 1308
+ K+ + L K K +F I + + N P+ +++ L L I +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 1309 ELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMIL--VRHGLMVVGESFGGK-- 1364
+ + I I+ L R + Y ++ +L V++ +F
Sbjct: 218 DHSSNIKLR-IHSIQAEL--RRLLKSKPYENCLL-----VLLNVQNAKAW--NAFNLSCK 267
Query: 1365 ---TTAYQTLADSLTDIAAKKSATMKEFKTGY------------------------KIIN 1397
TT ++ + D L A ++ N
Sbjct: 268 ILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 1398 PKSITM-GQLYGEFDSASHEWRDGILAK--TFREMAVST-TPD--RKWIMFDG----PID 1447
P+ +++ + + + W+ K T E +++ P RK MFD P
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVFPPS 384
Query: 1448 AVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN---LEFASPATVSRVGMIYFE 1504
I L LI ++IK S+ M ++ + +E + + IY E
Sbjct: 385 -AHIP--------TILLSLIWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 1505 LKC 1507
LK
Sbjct: 435 LKV 437
Score = 56.0 bits (134), Expect = 9e-08
Identities = 73/564 (12%), Positives = 162/564 (28%), Gaps = 182/564 (32%)
Query: 18 EKSVTGNTTEEFKKAHKEEHSKMLTAIEKSVTGNTTEEFKKAH------KEVLTLLDLLQ 71
++ N + F K + + + +++ + K + L D+
Sbjct: 115 QRDRLYNDNQVFAKYNVSRL-QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-DVCL 172
Query: 72 KDRT-----------TARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEF--- 117
+ + N + +L+M++ +D D +I L
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS--DHSSNIKLRIHSI 230
Query: 118 -RESSDLWMEGPFKGLNA----DEIKDKT-----DFMFREL---------NQL-ARKMTR 157
E L P++ N +++ + + L + L A T
Sbjct: 231 QAELRRLLKSKPYE--NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 158 APGCKMVNDLTRSKLES-FRK-------EVPILQCISNP------GMEER----HWK--- 196
LT +++S K ++P +NP R W
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 197 -ILSDELGQDITPNDQTSLKNM---------LDLGI----RNILPKLEEVSLSASKEAEL 242
+ D+L I ++SL + L + +I L + ++++
Sbjct: 349 HVNCDKLTTII----ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 243 SQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDDHILRAQTMRGSPYIKPFET 302
+NK+ S ++ T I I + L + +
Sbjct: 405 MVVVNKLHKY-SLVEKQ----PKESTISIPS---IYLELKVKLENEYAL----------- 445
Query: 303 EMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIM 362
+++ Y +I + + +DQ + +
Sbjct: 446 -----HRSIVDH---------------Y--------NIPKTFDSDDLIPPYLDQYFYS-- 475
Query: 363 LFVNKDPHI---LQATEMEDMLKNFNKCNLMLELIQK-------------GLNDYLEKKR 406
HI L+ E + + F L +++ + + L++ +
Sbjct: 476 -------HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 407 LFFPRFFFLSNDELLE-ILSETKDPLRVQPHLKKIFEGINLLEYSDSLEIIGMISLEGEK 465
+ + + ND E +++ D L KI E + +Y+D L I
Sbjct: 529 FY--KPYICDNDPKYERLVNAILD------FLPKIEENLICSKYTDLLRI---------- 570
Query: 466 VALSGLIRPNDAKGLVEKWLQQVE 489
AL + + + E+ +QV+
Sbjct: 571 -ALM-----AEDEAIFEEAHKQVQ 588
Score = 46.8 bits (110), Expect = 6e-05
Identities = 46/269 (17%), Positives = 91/269 (33%), Gaps = 77/269 (28%)
Query: 7 WK--EHSKMLTAIEKSVTGNTTEEFKKAHKE-----EHSK-------ML-TAIEKSVTGN 51
WK K+ T IE S+ E++K + ++ + KS
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 52 TTEEF-------KKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNY---ETVDEML 101
+ K+ + +++ + + + ++ E L + + +Y +T D
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELK---VKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 102 ERLEPFDQLW-SII---LEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTR 157
DQ + S I L+ E + F+ + D FR L Q R +
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTL--FRMVFLD---------FRFLEQKIRHDST 512
Query: 158 APGCK--MVNDLTRSKLESFRKEVPILQCISNPGMEERHWKILSDELGQDITPNDQTSLK 215
A ++N L + L+ ++ + I ND +
Sbjct: 513 AWNASGSILNTLQQ--LKFYKP----------------Y-----------ICDNDPK-YE 542
Query: 216 NMLDLGIRNILPKLEEVSLSASKEAELSQ 244
+++ I + LPK+EE + SK +L +
Sbjct: 543 RLVNA-ILDFLPKIEENLIC-SKYTDLLR 569
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 3e-10
Identities = 94/540 (17%), Positives = 158/540 (29%), Gaps = 201/540 (37%)
Query: 582 DVHAKEVVASLV-ESKVTQVEDFAWMSQLRYYNVNNLVNVCMITTTVQYGYEYLGNSDRL 640
D+HA + A L+ E+ T V+ ++ Y + R
Sbjct: 100 DIHA--LAAKLLQENDTTLVKTKEL---IKNY------------------ITARIMAKR- 135
Query: 641 VITPLTDRCYRTLMSALKLHLGGAPEGPA-------GTGKTETS-KDLAKAVAKQCIVFN 692
P + SAL EG A G G T+ ++L ++
Sbjct: 136 ---PFD----KKSNSAL---FRAVGEGNAQLVAIFGGQGNTDDYFEELRD-------LYQ 178
Query: 693 CSDRPTFPPNLRPSDLIIPTNVTCMQNFFINLYLQN-DVPMMFVGPTGTGKSTIVLNLLL 751
T+ + DLI L D +F G LN+L
Sbjct: 179 -----TYHVLVG--DLIKF-----SAETLSELIRTTLDAEKVF--TQG-------LNILE 217
Query: 752 NLSKDKYLPNIINF-SARTS---SNITQE---MIMAK--------LDRRRKGVYGPAMGK 796
L P+ S S + Q ++ AK L KG G + G
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG- 276
Query: 797 KYIV---FIAGSLKIKYPEKDEFV-IVLRAIIDVNMPKFLVQDLPLFIGIY-KDLFPGIE 851
+V IA + + F V +AI L FIG+ + +P
Sbjct: 277 --LVTAVAIAET-----DSWESFFVSVRKAI------TVL-----FFIGVRCYEAYPNTS 318
Query: 852 LPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMI-LDDLNMPQKETYGAQPAVEL 910
LPP+ ++ +E + M+ + +L Q
Sbjct: 319 LPPSILEDSLEN-------NEGVPS-----------PMLSISNLTQEQ------------ 348
Query: 911 LRQIIDH--KHL-YDFQTVTRVDLVDIIYITAMI--PTMNTITG--RLLRHMNIISIDSF 963
++ ++ HL Q + I +++ ++G + L +N+
Sbjct: 349 VQDYVNKTNSHLPAGKQ----------VEI-SLVNGAKNLVVSGPPQSLYGLNL------ 391
Query: 964 NEATLSKIFTSVLDWHFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPI--PSKSHYVF 1021
TL K G S + S+ F FLP+ P SH
Sbjct: 392 ---TLRKA-------KAPSGLDQSRIPFSER--KLKFSN------RFLPVASPFHSHL-- 431
Query: 1022 NLRDFAKVIMG-LT----QLPASHCKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMM 1076
L + +I L A + P +Y + LRV S + + ++D +
Sbjct: 432 -LVPASDLINKDLVKNNVSFNAKDIQIP--VYDTFDGSDLRVLSGSIS-----ERIVDCI 483
Score = 60.1 bits (145), Expect = 6e-09
Identities = 85/554 (15%), Positives = 175/554 (31%), Gaps = 165/554 (29%)
Query: 1006 STKVFLPIPSKSHYVFN-LRD-FAKVIMGLTQLPASHCKAPDKMYKLWTHEILRVFSDRL 1063
S + L +P+ S ++ + L++ F K++ T+ A+ P +L L + L
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD-DEPTTPAELVGK-FLG-YVSSL 71
Query: 1064 VDEADKQSLLDMMKYACQNIIGTKMDEFLKNK-----------ITDKTISADD--LRSLF 1110
V+ + ++ + +L+ D T+ +++
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFE----NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 1111 FGNFLGNT----------------------IIFPG---AWACFDEFNRIEL--------- 1136
+ IF G F+E R +L
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-R-DLYQTYHVLVG 185
Query: 1137 EVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGYAGRTELPDNLKVL 1196
+++ A+ + + + T +K +G I + ++ NP PD
Sbjct: 186 DLIKFSAETLSEL-IRTTLDAEKVFTQGLNI------LEWLE-NPSNT-----PDKD--Y 230
Query: 1197 FRSVAMMVPDYAMIGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKS 1256
S+ + P +IG + + + + A+ + +T L + + G+ V +
Sbjct: 231 LLSIPISCP---LIG---VIQLA--HYVVTAKLLGFTPGELRSYLKGATGHSQGL--VTA 280
Query: 1257 VLNAAGSLKIKYPEKDEFV-IVLRAIIDVNMPKFLVQDLPLFIGIY-KDLFPGIELPPTD 1314
V A + F V +AI L FIG+ + +P LPP+
Sbjct: 281 VAIAETD------SWESFFVSVRKAI------TVL-----FFIGVRCYEAYPNTSLPPSI 323
Query: 1315 ------------------RDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILV---RHG 1353
+ EQ++ + K N+ K +++ LV ++
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA---GKQVEIS---LVNGAKN- 376
Query: 1354 LMVV-G--ESFGGKTTAYQTL-ADSLTDIAAKKSATMK-EFKTGY-KIINP--------- 1398
+VV G +S G + A S D + + K +F + + +P
Sbjct: 377 -LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 1399 KSITMGQLYG---EFDSAS-----HEWRDGILAKTFREMAVSTTPD-RKWIMFDGPIDAV 1449
+ L F++ ++ DG R ++ S + I+ P+
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDG---SDLRVLSGSISERIVDCIIRL-PVK-- 489
Query: 1450 WIENMNT----VLD 1459
W +LD
Sbjct: 490 WETTTQFKATHILD 503
Score = 58.1 bits (140), Expect = 3e-08
Identities = 64/397 (16%), Positives = 118/397 (29%), Gaps = 151/397 (38%)
Query: 1031 MGLTQLPASHCKAPDKMYKLWTHEILR-VFSDRLVDEADKQSLLDMMKYACQNIIGTKMD 1089
MG+ +YK T + + V+ + AD D ++ +I+
Sbjct: 1631 MGM------------DLYK--TSKAAQDVW-----NRADNH-FKDTYGFSILDIV----- 1665
Query: 1090 EFLKNKITDKTISADDLRSLFFGNFLGNTIIFPGAWACFDEFNRIELEVLSVVAQQVQSI 1149
N + TI FG G I + ++ + E + + + I
Sbjct: 1666 ---INNPVNLTI--------HFGGEKGKRI--------RENYSAMIFETIVDGKLKTEKI 1706
Query: 1150 QLATIAKLKKFMFEGTEISLNPTSM----IFITMNPGYAGRTELPDNLKVLFRSVAMMVP 1205
+ F + L+ T + + A + L +S ++
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLM---EKAA-------FEDL-KSKGLIPA 1755
Query: 1206 DYAM----IGEISLYSMGFQNAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAA 1261
D +GE Y+ A LA ++ +S +S V+ V+
Sbjct: 1756 DATFAGHSLGE---YA-----A--LAS--------LADVMSIES-------LVE-VVFYR 1789
Query: 1262 GSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQ 1321
G +DE +I +N PG + + E ++
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAIN--------------------PG-RVAASFSQEALQY 1828
Query: 1322 IKINLAKRNAQATDWYIEKII------QVYEMILVRHGLMVVGESFGGKTTAYQTLADSL 1375
+ +R + T W +E I+ Q Y V G A T+ + L
Sbjct: 1829 V----VERVGKRTGWLVE-IVNYNVENQQY----------VAA----GDLRALDTVTNVL 1869
Query: 1376 TDIAAKKSATMKEFKTGYKIIN-PKSITM----GQLY 1407
I +K II KS+++ G L+
Sbjct: 1870 NFIKLQK----------IDIIELQKSLSLEEVEGHLF 1896
Score = 57.8 bits (139), Expect = 3e-08
Identities = 59/345 (17%), Positives = 104/345 (30%), Gaps = 120/345 (34%)
Query: 272 QGTDEIQVM-LDDHILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMY 330
QG+ E Q M +D L S + + W + +D G
Sbjct: 1624 QGSQE-QGMGMD---LYKT----SKAAQ------DVWNRADNHFKDTY-------G---- 1658
Query: 331 LEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLM 390
FS DI+ P T+ F + ++ + + L
Sbjct: 1659 ----FSILDIVINNPVN----LTI--------HFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 391 LELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYS 450
E I K +N++ + F S LL T QP + L+E +
Sbjct: 1703 TEKIFKEINEHSTS-------YTFRSEKGLLSATQFT------QP---ALT----LMEKA 1742
Query: 451 DSLEII---GMI---------SLEGEKVAL---SGLIRPNDAKGLVE---KWLQQVEDLM 492
+ E + G+I SL GE AL + ++ +V +Q
Sbjct: 1743 -AFEDLKSKGLIPADATFAGHSL-GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 493 IKSLQDICMMAL-----GAYYKSERVVWV-------TKW---------PGMVVICVSSIT 531
+ M+A+ A + E + +V T W +
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA----- 1855
Query: 532 WTAEVEKAIQGRKLDAMLDK-SVKQIDI-------MVIKVRGKLL 568
A +A+ + +L+ +++IDI + +V G L
Sbjct: 1856 --AGDLRALD--TVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 54.7 bits (131), Expect = 3e-07
Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 24/123 (19%)
Query: 1403 MG-QLYGEFDSASHEWR--DGILAKTF----REMAVSTTPDRKWIMFDGPIDAVWIENM- 1454
MG LY +A W D T+ ++ V P I F G EN
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI-VINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 1455 ----NTVLDDNKKLCLINGEIIKMSNTMNLIFECEN--L---EFASPA--TVSRVGMIYF 1503
T++D K I EI + ++ + F E L +F PA + + +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINE--HSTSYTFRSEKGLLSATQFTQPALTLMEKA--AFE 1745
Query: 1504 ELK 1506
+LK
Sbjct: 1746 DLK 1748
Score = 52.7 bits (126), Expect = 1e-06
Identities = 127/799 (15%), Positives = 212/799 (26%), Gaps = 357/799 (44%)
Query: 694 SDRP-TFP-PNLRPSDLIIPTN--VTCMQ---NFFINL------YLQNDVP--------- 731
S RP T +L L++PT Q F L + +D P
Sbjct: 5 STRPLTLSHGSLEHV-LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 732 -MMFVG----PTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRR 786
+ +V P+ G+ VLNL L ++ YL ++I + AKL +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL---------EGNDI--HALAAKLLQEN 112
Query: 787 KGVYGPAMGKKYIVFIAGSLKIK-YPEKDEFVIVLRAIIDVNMPKFLVQDLPLF------ 839
+ K + IK Y + A I P + LF
Sbjct: 113 D---TTLVKTKEL--------IKNY---------ITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 840 -IGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQ-ATDWYIEKIIQVYEMILDDLNMP 897
+ +F G Q TD Y E++ +Y
Sbjct: 153 NAQLVA-IFGG------------------------QGNTDDYFEELRDLY---------- 177
Query: 898 QKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNI 957
+TY V DL+
Sbjct: 178 --QTY--HVLVG--------------------DLIKFS---------------------- 191
Query: 958 ISIDSFNEATLSKIFTSVLDW--HFSKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPS 1015
TLS++ + LD F++G +I++ +N Y S + P+
Sbjct: 192 -------AETLSELIRTTLDAEKVFTQGL--NILEWLENPSNTPDKDYLLSIPISCPL-- 240
Query: 1016 KSHYVFNLRDFAKVIMGLTQLPASH----CKAPDKMYKLWTHEILRVFSDRLVDEADKQS 1071
I G+ QL +H K +T LR L +
Sbjct: 241 --------------I-GVIQL--AHYVVTAKLLG-----FTPGELR---SYL------KG 269
Query: 1072 LLDMMKYAC-QNII-------GTKMDEFLKNKITDKTISADDLRSLFFGNFLGNTIIFPG 1123
Q ++ + F + + LF F+G
Sbjct: 270 AT-----GHSQGLVTAVAIAETDSWESFFVS-------VRKAITVLF---FIG------- 307
Query: 1124 AWACFDEFNRIELEVLSVVAQQVQSIQLATIAKLKKFMFEGTEISLNPTSMIFITMNPGY 1183
C++ + L S++ +++ EG P+ M+ I+
Sbjct: 308 -VRCYEAYPNTSLP-PSILEDSLENN-------------EGV-----PSPMLSIS---NL 344
Query: 1184 ----------AGRTELPDNLKV---LFRSVAMMV----PDYAMIGEISLYSMGFQNAKIL 1226
+ LP +V L +V P SLY + K
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP-------QSLYGLNLTLRKAK 397
Query: 1227 AE------KIVYTYKLCSEQ---LSSQ---------SHYDYGMR-AVKSVLNAAGSLKIK 1267
A +I + SE+ S++ SH + A + +
Sbjct: 398 APSGLDQSRIPF-----SERKLKFSNRFLPVASPFHSHL---LVPASDLINKDLVKNNVS 449
Query: 1268 YPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLA 1327
+ KD ++ +P + D G DL L + + +++ I
Sbjct: 450 FNAKD-----IQ------IPVYDTFD-----G--SDL---RVLSGSISERIVDCIIR--- 485
Query: 1328 KRNAQATDWYIEKIIQVYEMILVRHGLMVVGESFG-GKTTAYQTLADSLTD------IAA 1380
W E Q H L FG G + L D I A
Sbjct: 486 ----LPVKW--ETTTQFK----ATHIL-----DFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Query: 1381 KKSATMK-----EFKTGYK 1394
T+ ++ G+K
Sbjct: 531 ---GTLDINPDDDY--GFK 544
Score = 41.2 bits (96), Expect = 0.003
Identities = 48/335 (14%), Positives = 98/335 (29%), Gaps = 112/335 (33%)
Query: 21 VTGNTTEEFKKAHKEEHSKMLTAIEKSV-------TGNTTEEFKKAHKEVLTLLDLL--- 70
+ G T E + + K T + + ++ E F + ++ +T+L +
Sbjct: 255 LLGFTPGELR-----SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 71 -QKDRTTARQINEEQELLKMVRTNYETV-DEMLE-RLEPFDQLWSIILEFR----ESSDL 123
+ + +L+ N E V ML +Q+ + + +
Sbjct: 310 CYE---AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 124 WME-----------GPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKL 172
+ GP + L LN RK G D +R
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYG-------------LNLTLRKAKAPSGL----DQSRIP- 408
Query: 173 ESFRKEVPILQC----ISNP----GMEERHWKILSDELGQDITPNDQTSLKNMLDLGI-- 222
F + +++P + I D + +++ N + D+ I
Sbjct: 409 --FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK-------DIQIPV 459
Query: 223 ------RNILPKLEEVSLSASKEAELSQSLNKMVTE----WSDIK-------LDVVPYRD 265
+ L +S +S+ + + W LD P
Sbjct: 460 YDTFDGSD----LRVLS------GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA 509
Query: 266 TG----TY-IIQGTDEIQVMLDDHILRAQTMRGSP 295
+G T+ GT ++V++ A T+ +P
Sbjct: 510 SGLGVLTHRNKDGTG-VRVIV------AGTLDINP 537
Score = 38.5 bits (89), Expect = 0.023
Identities = 52/309 (16%), Positives = 97/309 (31%), Gaps = 111/309 (35%)
Query: 678 KDLAK--AVAKQCIVFNCSDRPTFPPNLRPSDL-IIPTNVTCMQNFF-------INLYLQ 727
DL K A+ V+N +D F S L I+ N + F I +
Sbjct: 1633 MDLYKTSKAAQD--VWNRADN-HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR---E 1686
Query: 728 NDVPMMF-VGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSA------RTSSNITQ----- 775
N M+F G K+ + + +++ + F + T TQ
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEI-----NEHSTSYT-FRSEKGLLSATQ--FTQPALTL 1738
Query: 776 -EM-IMAKLDRRRKGVY-GPAM------GKKY-----------------IVFIAGSLKIK 809
E L + KG+ A G+ Y +VF G
Sbjct: 1739 MEKAAFEDL--KSKGLIPADATFAGHSLGE-YAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 810 YPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLA 869
+DE +I +N PG + + E ++ +
Sbjct: 1796 AVPRDELGRSNYGMIAIN--------------------PG-RVAASFSQEALQYV----V 1830
Query: 870 KRNAQATDWYIEKIIQV-YEMILDDLNMPQKETY---GAQPAVELLRQIIDHKHLYDFQT 925
+R + T W +E I V Y N+ + Y G A++ + +++
Sbjct: 1831 ERVGKRTGWLVE-I--VNY-------NVEN-QQYVAAGDLRALDTVTNVLNFIK------ 1873
Query: 926 VTRVDLVDI 934
+ ++D++++
Sbjct: 1874 LQKIDIIEL 1882
Score = 37.3 bits (86), Expect = 0.048
Identities = 59/416 (14%), Positives = 105/416 (25%), Gaps = 171/416 (41%)
Query: 1166 EISLN-PTSMIFITMNPGYAGRTELPDN-LKVLFRSVAMMVPDYAMIGEISLYS--MGFQ 1221
E L PT+ F A ++L + K+L D L +G+
Sbjct: 17 EHVLLVPTASFF------IA--SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY- 67
Query: 1222 NAKILAEKIVYTYKLCSEQLSSQSHYDYGMRAVKSVLNAAGS--LKIKYPEKD--EFVIV 1277
++ + E S +D + + L + L+ D
Sbjct: 68 ----VSSLV--------EP-SKVGQFD---QVLNLCLTEFENCYLE----GNDIHALAAK 107
Query: 1278 LRAIIDVNMPKFLVQDLPLFIGIYKD--LFPGIELPPTDRDELIEQIKINLAKRNAQ--- 1332
L D + K ++L I Y + L + A+ A
Sbjct: 108 LLQENDTTLVK--TKEL---IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 1333 --ATDWYIEKIIQVYEMILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-------- 1382
TD Y E++ +Y+ Y L L +A+
Sbjct: 163 QGNTDDYFEELRDLYQT--------------------YHVLVGDLIKFSAETLSELIRTT 202
Query: 1383 SATMKEFKTGYKII----NPKS----------------ITMGQL--Y-----------GE 1409
K F G I+ NP + I + QL Y GE
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 1410 FD-------------------SASHEWRD---------------GILA-KTFREMAVST- 1433
+ + W G+ + + ++
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 1434 -------------TPDRKWIMF---DGPIDAV--WIENMNTVLDDNKKLC--LING 1469
+P M + + V ++ N+ L K++ L+NG
Sbjct: 323 ILEDSLENNEGVPSP-----MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 37.6 bits (88), Expect = 0.017
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 704 RP---SDLIIPTNVTCMQNFFINLYLQNDVP-MMFVGPTGTGKSTIVLNLLLNLSKDKYL 759
RP +++ V ++ + ++P ++F GP GTGK+ + L +L + +
Sbjct: 12 RPRTLDEVVGQDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATAIALARDLFGENWR 68
Query: 760 PNIINFSA 767
N I +A
Sbjct: 69 DNFIEMNA 76
Score = 31.0 bits (71), Expect = 2.1
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 13/38 (34%)
Query: 667 GPAGTGKTETSKDLAKAVAKQ---------CIVFNCSD 695
GP GTGKT T A A+A+ I N SD
Sbjct: 45 GPPGTGKTAT----AIALARDLFGENWRDNFIEMNASD 78
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.048
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 27 EEFKK--AHKEEHSKMLTAIEKSVTGNTTEEFKKAHKEVLTLLDLLQKDRTTARQINEEQ 84
EE +K + SK++ + EE+ + E Q ++ ++
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE--------QVEKNKINNRIADK 143
Query: 85 ELLK 88
+
Sbjct: 144 AFYQ 147
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 36.5 bits (85), Expect = 0.053
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 704 RP---SDLIIPTNVTCMQNFFINLYLQNDVP-MMFVGPTGTGKSTIVLNLLLNLSKDKYL 759
RP +++ V ++ + ++P ++F GP GTGK+ + L +L + +
Sbjct: 12 RPRTLDEVVGQDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATAIALARDLFGENWR 68
Query: 760 PNIINFSA 767
N I +A
Sbjct: 69 DNFIEMNA 76
Score = 30.0 bits (68), Expect = 6.0
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 13/38 (34%)
Query: 667 GPAGTGKTETSKDLAKAVAKQ---------CIVFNCSD 695
GP GTGKT T A A+A+ I N SD
Sbjct: 45 GPPGTGKTAT----AIALARDLFGENWRDNFIEMNASD 78
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 36.2 bits (84), Expect = 0.062
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 704 RP---SDLIIPTNVTCMQNFFINLYLQNDVP-MMFVGPTGTGKSTIVLNLLLNLSKDKYL 759
RP D++ ++ ++ +P ++F GP G GK+T L L L + +
Sbjct: 20 RPQRLDDIVGQEHIVKRLKHYVK---TGSMPHLLFAGPPGVGKTTAALALARELFGENWR 76
Query: 760 PNIINFSA 767
N + +A
Sbjct: 77 HNFLELNA 84
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.065
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 15/35 (42%)
Query: 651 RTLMSALKLHLGGAPE-GPAGTGKTETSKDLA-KA 683
+ L ++LKL+ A + PA LA KA
Sbjct: 23 KKLQASLKLY---ADDSAPA----------LAIKA 44
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 34.9 bits (81), Expect = 0.14
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 667 GPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPP 701
G G GKT ++ LAK + NC T P
Sbjct: 52 GTRGVGKTSIARLLAKGL-------NCETGITATP 79
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 35.2 bits (82), Expect = 0.19
Identities = 13/17 (76%), Positives = 15/17 (88%), Gaps = 1/17 (5%)
Query: 734 FVGPTGTGKSTIVLNLL 750
VGPTG+GK+TIV NLL
Sbjct: 386 LVGPTGSGKTTIV-NLL 401
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis,
heme, iron, synthesis, lyase, metal-binding, oxylipin
biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana}
PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 34.9 bits (80), Expect = 0.24
Identities = 43/303 (14%), Positives = 85/303 (28%), Gaps = 37/303 (12%)
Query: 879 YIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYIT 938
+ + I+ Y + +NMP P V L L+D V + DL+ Y+
Sbjct: 57 FFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKVEKKDLLTGTYMP 116
Query: 939 AMIPTMNTITGRLLR------------HMNIIS------IDSFNEATLSKIFTSVLDWHF 980
+ T L ++ F L+
Sbjct: 117 STELTGGYRILSYLDPSEPKHEKLKNLLFFLLKSSRNRIFPEFQAT--YSELFDSLEKEL 174
Query: 981 SKGFADSIVKLSKNIVAATFHVYSESTKVFLPIPSKSHYVFNLRDFAKVIMGLTQLPASH 1040
S F+ + + + P+ + + + P
Sbjct: 175 SLKGKADFGGS---SDGTAFNFLARA--FYGTNPADTKLKADAPGLITKWVLFNLHPLLS 229
Query: 1041 CKAPDKMYKLWTHEILRVFSDRLVDEADKQSLLDMMKYACQNIIGTKMDEFLKNKITDKT 1100
P + + H + ++D Q L + G + E K I+ +
Sbjct: 230 IGLPRVIEEPLIH---TFSLPPALVKSDYQRLYEFFL----ESAGEILVEADKLGISREE 282
Query: 1101 ISADDLRSLFFGNFLGNTIIFPGAWACFDEFN-----RIELEVLSVVAQQVQSIQLATIA 1155
+ + L + F + G I+FP R+ E+ SV+ + + I
Sbjct: 283 ATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGELTMGAIE 342
Query: 1156 KLK 1158
K++
Sbjct: 343 KME 345
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 34.3 bits (78), Expect = 0.25
Identities = 36/175 (20%), Positives = 56/175 (32%), Gaps = 21/175 (12%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNI-------TQEMIMAKLDR 784
M F G GTGK+T+ L + L + Y+ + + T ++ T L R
Sbjct: 70 MSFTGNPGTGKTTVALKMAGLLHRLGYVRK-GHLVSVTRDDLVGQYIGHTAPKTKEVLKR 128
Query: 785 RRKGV---------YGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQD 835
GV Y P + Y L + ++V+ A M F +
Sbjct: 129 AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSN 188
Query: 836 LPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMI 890
G + IE P +EL E L +N Q T + +
Sbjct: 189 P----GFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLR 239
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 34.5 bits (80), Expect = 0.33
Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Query: 734 FVGPTGTGKSTIVLNLL 750
FVG +G GKST++ NL+
Sbjct: 372 FVGMSGGGKSTLI-NLI 387
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp,
clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A
{Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B*
3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 34.1 bits (79), Expect = 0.35
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 667 GPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPP 701
G G GKT ++ LAK + NC T P
Sbjct: 45 GTRGVGKTSIARLLAKGL-------NCETGITATP 72
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 32.5 bits (75), Expect = 0.59
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 731 PMMFV--GPTGTGKSTIVLNLLLNLSKDKYLPNIINFS 766
P V GP+G GKST++ L + +I FS
Sbjct: 4 PRPVVLSGPSGAGKSTLLKKLF------QEHSSIFGFS 35
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 33.7 bits (78), Expect = 0.60
Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 734 FVGPTGTGKSTIVLNLL 750
VG +G+GKSTI +L+
Sbjct: 374 LVGRSGSGKSTIA-SLI 389
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 33.3 bits (77), Expect = 0.61
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 734 FVGPTGTGKSTIVLNLL 750
VG +G+GKSTI NL
Sbjct: 374 LVGRSGSGKSTIA-NLF 389
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 33.3 bits (76), Expect = 0.69
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 667 GPAGTGKTETSKDLAKAVAKQC 688
GP G GKT LAKAVA +
Sbjct: 155 GPPGNGKTM----LAKAVAAES 172
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 33.1 bits (76), Expect = 0.71
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 11/43 (25%)
Query: 667 GPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLI 709
GP GTGK+ LAKAVA + + TF ++ SDL+
Sbjct: 52 GPPGTGKSY----LAKAVATEA------NNSTF-FSISSSDLV 83
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 32.7 bits (75), Expect = 0.75
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 667 GPAGTGKTETSKDLAKAVAKQC 688
GP G GKT LA+AVA +C
Sbjct: 61 GPPGNGKTL----LARAVATEC 78
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 32.8 bits (75), Expect = 0.79
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 667 GPAGTGKTETSKDLAKAVAKQC 688
GP GTGKT + K +A Q
Sbjct: 124 GPPGTGKTL----IGKCIASQS 141
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 32.7 bits (75), Expect = 0.93
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 667 GPAGTGKTETSKDLAKAVAKQC 688
GP GTGK+ LAKAVA +
Sbjct: 58 GPPGTGKSY----LAKAVATEA 75
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 32.4 bits (75), Expect = 0.95
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 734 FVGPTGTGKSTIVLNLL 750
F GP+G GKSTI +LL
Sbjct: 33 FAGPSGGGKSTIF-SLL 48
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 32.6 bits (74), Expect = 1.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNL 753
++ G TGTGKS ++ L
Sbjct: 56 LLVNGATGTGKSVLLRELAYTG 77
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 32.2 bits (74), Expect = 1.1
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 667 GPAGTGKTETSKDLAKAVAKQC 688
GP G GKT LAKAVA +
Sbjct: 51 GPPGCGKTL----LAKAVANES 68
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 32.2 bits (74), Expect = 1.1
Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 734 FVGPTGTGKSTIVLNLL 750
VGP+G GKSTI L LL
Sbjct: 85 LVGPSGAGKSTI-LRLL 100
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 32.0 bits (72), Expect = 1.2
Identities = 21/142 (14%), Positives = 42/142 (29%), Gaps = 2/142 (1%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYG 791
V P G GKS + L L ++ L + + E + R + G
Sbjct: 33 GALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHAL-G 91
Query: 792 PAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIE 851
+ + +A L I+ I+ D + L + + + E
Sbjct: 92 AHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRL-MVLDTLRRFHIEEE 150
Query: 852 LPPTDRDELIEQIKINLAKRNA 873
++I +++ A
Sbjct: 151 NASGPMAQVIGRMEAIAADTGC 172
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 32.2 bits (73), Expect = 1.7
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 667 GPAGTGKTETSKDLAKAVAKQC----IVFNCSD 695
GP G GKT A VA++ + N SD
Sbjct: 84 GPPGIGKTTA----AHLVAQELGYDILEQNASD 112
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 31.6 bits (72), Expect = 1.7
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 704 RP---SDLIIPTNVTCMQNFFINLYLQNDVP-MMFVGPTGTGKSTIVLNLLLNLSKDKYL 759
RP ++ V + +P ++F GP GTGK++ ++ L + Y
Sbjct: 20 RPETLDEVYGQNEVI---TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76
Query: 760 PNIINFSA 767
++ +A
Sbjct: 77 NMVLELNA 84
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 31.6 bits (71), Expect = 1.9
Identities = 17/157 (10%), Positives = 54/157 (34%), Gaps = 9/157 (5%)
Query: 54 EEFKKAHKEVLTLLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLER-LEPFDQLWS 112
+ K H++ + + ++E ++ + + ++ E + ++
Sbjct: 18 AQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSK 77
Query: 113 IILEFRESSDLWMEGPFKGLNADEIKDKTDFMFRELNQLARKMTRAPGCKMVNDLTRSKL 172
LE E LN++ +K + + +L + + N ++
Sbjct: 78 EYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQDL---RAQASDNREIDKRM 134
Query: 173 ESFRKEVPILQCISNPGM-----EERHWKILSDELGQ 204
S + ++ L+ I + + + + +++ LG
Sbjct: 135 NSLKPDLMQLRKIRDQYLVWLTQKGARQRKINEWLGI 171
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 31.5 bits (72), Expect = 1.9
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 667 GPAGTGKTETSKDLAKAVAKQC 688
GP G GKT LAKA+A +C
Sbjct: 56 GPPGCGKTL----LAKAIANEC 73
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 31.4 bits (72), Expect = 2.2
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 734 FVGPTGTGKSTIVLNLLL 751
VG TG+GKSTI LL
Sbjct: 51 LVGHTGSGKSTIA-KLLY 67
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 31.3 bits (72), Expect = 2.3
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 733 MFVGPTGTGKSTIVLNLLL 751
G +G GKS++ LN +
Sbjct: 173 TMAGLSGVGKSSL-LNAIN 190
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 31.4 bits (72), Expect = 2.3
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 733 MFVGPTGTGKSTIVLNLLLNLS 754
+ GP+G GKS+I L+ L
Sbjct: 169 ILAGPSGVGKSSI-LSRLTGEE 189
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 31.5 bits (72), Expect = 2.5
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 733 MFVGPTGTGKSTIVLNLLL 751
+F G +G GKS++ LN LL
Sbjct: 219 IFAGQSGVGKSSL-LNALL 236
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 31.7 bits (72), Expect = 2.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 667 GPAGTGKTETSKDLAKAVAKQC----IVFNCSD 695
GP GTGKT +A+AVA + + N +
Sbjct: 245 GPPGTGKTL----IARAVANETGAFFFLINGPE 273
Score = 30.9 bits (70), Expect = 4.2
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 667 GPAGTGKTETSKDLAKAVAKQC 688
GP G GKT LAKA+A +C
Sbjct: 518 GPPGCGKTL----LAKAIANEC 535
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 31.0 bits (71), Expect = 2.7
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 733 MFVGPTGTGKSTIVLNLLL 751
+F G +G GKS++ LN +
Sbjct: 177 VFAGQSGVGKSSL-LNAIS 194
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 31.2 bits (70), Expect = 3.0
Identities = 27/212 (12%), Positives = 61/212 (28%), Gaps = 47/212 (22%)
Query: 667 GPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPP--NLRPSDLIIPTNVTCMQNFFI-- 722
G G+GK+ +++L + + ++ F L+P ++ + T N
Sbjct: 31 GSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM 90
Query: 723 ----------------------NLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLP 760
L N+ V GT + + + ++ +K
Sbjct: 91 IENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQ 150
Query: 761 NIINFSARTSSN-------ITQEMIMAKLDRRRKG---VYGPAMGKKYIVFIAGSLKIKY 810
+ IN + + + +R+G + + +A + K
Sbjct: 151 DSINIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKV 210
Query: 811 PEKDEFVIV-----------LRAIIDVNMPKF 831
+F + I D+ +P F
Sbjct: 211 SSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGF 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 30.1 bits (69), Expect = 3.1
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 731 PMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFS 766
P++ GP+GTGKST++ L P+ FS
Sbjct: 3 PIVISGPSGTGKSTLLKKLF------AEYPDSFGFS 32
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 31.2 bits (71), Expect = 4.1
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 734 FVGPTGTGKSTIVLNLL 750
VG +G GKST+V LL
Sbjct: 1064 LVGSSGCGKSTVV-QLL 1079
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 30.6 bits (70), Expect = 4.2
Identities = 11/18 (61%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
Query: 734 FVGPTGTGKSTIVLNLLL 751
VGP+G+GKST++ +LLL
Sbjct: 375 LVGPSGSGKSTVL-SLLL 391
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 30.9 bits (70), Expect = 4.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 667 GPAGTGKTETSKDLAKAVAKQCIVF-NCSDR 696
GPAG+GKT T LAK Q +++ C +R
Sbjct: 234 GPAGSGKTVTQHQLAKWSDAQVVIYIGCGER 264
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 30.9 bits (70), Expect = 4.3
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 667 GPAGTGKTETSKDLAKAVAKQCIVF-NCSDR 696
GP G+GK+ T + LAK +V+ +R
Sbjct: 228 GPFGSGKSVTQQSLAKWSNADVVVYVGSGER 258
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 30.1 bits (67), Expect = 4.5
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLD 783
+M VG +G GKST++ N L D Y P S R + E +
Sbjct: 11 LMVVGESGLGKSTLI-NSLFL--TDLYSPEYPGPSHRIKKTVQVEQSKVLIK 59
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 30.1 bits (69), Expect = 4.6
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 734 FVGPTGTGKSTIVLNLLL 751
VG +G+GKST+ L+
Sbjct: 40 IVGRSGSGKSTLT-KLIQ 56
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 30.5 bits (69), Expect = 4.8
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 704 RP---SDLIIPTNVTCMQNFFINLYLQNDVP-MMFVGPTGTGKSTIVLNLLLNLSKDKYL 759
RP SD++ ++P M+ G G GK+T V L L Y
Sbjct: 16 RPQVLSDIVGNKETIDRLQQIAK---DGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYA 72
Query: 760 PNIINFSA 767
++ +A
Sbjct: 73 DGVLELNA 80
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 30.5 bits (68), Expect = 4.8
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 721 FINLYLQNDVP--MMFVGPTGTGKSTIVLNLLLNLSKDK 757
I +++N+V +F+G TGTGK+ + + + + K
Sbjct: 35 AIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVK 73
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter,
acarbose-binding protein, transport protein; 1.35A
{Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Length = 412
Score = 30.5 bits (69), Expect = 4.9
Identities = 21/127 (16%), Positives = 34/127 (26%), Gaps = 19/127 (14%)
Query: 1294 LPLFIG----IY-KDLFP--GIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYE 1346
+P I Y K+L G+E P EL K A +
Sbjct: 136 VPQVIDTLALFYNKELLTKAGVE-VPGSVAELKTAAAEITEKTGATGLYLRGDDPYWFLP 194
Query: 1347 MILVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSAT-MKEFKTGYKIINPKSITMGQ 1405
+ GG + ++ D A ++ +K+ I S
Sbjct: 195 YLY----------GEGGDLVDEKNKTVTVDDEAGVRAYRVIKDLVDSKAAITDASDGWNN 244
Query: 1406 LYGEFDS 1412
+ F S
Sbjct: 245 MQNAFKS 251
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation,
chromatin, structural genomics consortium, SGC,
activator, chromatin regulator; HET: DNA; 1.80A {Homo
sapiens}
Length = 93
Score = 28.3 bits (63), Expect = 5.0
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 81 NEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILEFRESSDLWMEGPFKGLNADEIKDK 140
E Q L D + + FD + +I D + FK + +++K++
Sbjct: 22 QEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVI------HDRYDHQQFKKRSVEDLKER 75
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 30.2 bits (69), Expect = 5.1
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 734 FVGPTGTGKSTIVLNLLLNL 753
VGP G+GKST+ LL NL
Sbjct: 50 LVGPNGSGKSTVA-ALLQNL 68
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 30.2 bits (67), Expect = 5.4
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 732 MMFVGPTGTGKSTIVLNLLL-NLSKDKYLPNIINFSARTSS 771
+M VG +G GKST++ +L L +L ++ + RT
Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQ 61
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 30.3 bits (68), Expect = 5.5
Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 733 MFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGP 792
+ G TGTGK+ +V + N +K I F+ S ++ G+
Sbjct: 285 LATGATGTGKTLLVSRFVENACANKE--RAILFAYEESR----AQLLRNA--YSWGMDFE 336
Query: 793 AMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQD 835
M ++ ++ I + ++ + ++++ I+ P + D
Sbjct: 337 EMERQNLLKIVCAYPESA-GLEDHLQIIKSEINDFKPARIAID 378
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 30.3 bits (68), Expect = 5.7
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 667 GPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVTCMQNF 720
G GTGKT + +A+A+ T L + Q F
Sbjct: 77 GQPGTGKTAIAMGMAQAL-------GPDTPFTAIAGSEIFSLEMSKTEALTQAF 123
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 30.3 bits (69), Expect = 5.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 667 GPAGTGKTETSKDLAKA 683
GP G GKTE + L+KA
Sbjct: 495 GPTGVGKTEVTVQLSKA 511
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 29.9 bits (68), Expect = 5.9
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 667 GPAGTGKTETSKDLAKAVAKQ 687
GP GTGKT LAKAVA +
Sbjct: 58 GPPGTGKTL----LAKAVATE 74
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein,
periplasmic-binding protein, maltose, SUG binding
protein; 2.20A {Xanthomonas axonopodis PV}
Length = 458
Score = 30.1 bits (68), Expect = 5.9
Identities = 15/112 (13%), Positives = 27/112 (24%), Gaps = 21/112 (18%)
Query: 1300 IY-KDLFP--GIELPPTDRDELIEQIKI--NLAKRNAQATDWYIEKIIQVYEMILVRHGL 1354
Y KDL G P E+ + + + A + + Q L +
Sbjct: 148 FYRKDLLREAGYSQMPKTWAEMEQVMAAIKRKVGPDRYAILMPLNEFEQQLSFALQQDDR 207
Query: 1355 MVVGESFGGKTT--------AYQTLADSLTDIAAKKSATMKE------FKTG 1392
++ A + A K + + F G
Sbjct: 208 LLRDH--DNYGNFRGAGFRKALGFYDNMYQQGWAPKVSETQVSNVWYEFFNG 257
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 29.8 bits (68), Expect = 5.9
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 731 PMMFV--GPTGTGKSTIVLNLLLNLSKDKYLPNIINFS 766
V GP+G GK T++ LL PN FS
Sbjct: 23 IYPLVICGPSGVGKGTLIKKLL------NEFPNYFYFS 54
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 29.4 bits (67), Expect = 6.3
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 731 PMMFV--GPTGTGKSTIVLNLLLNLSKDKYLPNIINFS 766
V GP+G GK T++ +L P+ FS
Sbjct: 12 IPPLVVCGPSGVGKGTLIKKVL------SEFPSRFRFS 43
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 29.8 bits (68), Expect = 6.5
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 666 EGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLI 709
EG G KT + LAK + F+ R F P+L PSDLI
Sbjct: 52 EGVPGLAKTLSVNTLAKTMDLD---FH---RIQFTPDLLPSDLI 89
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 30.2 bits (67), Expect = 6.7
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 10/83 (12%)
Query: 736 GPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMG 795
G G GK+ +L+ +N +D L EMI + + V
Sbjct: 168 GVPGCGKTKEILS-RVNFEEDLIL---------VPGRQAAEMIRRRANASGIIVATKDNV 217
Query: 796 KKYIVFIAGSLKIKYPEKDEFVI 818
+ F+ K + I
Sbjct: 218 RTVDSFLMNYGKGARCQFKRLFI 240
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 30.0 bits (67), Expect = 6.7
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 718 QNFFINLYLQNDVP----MMFVGPTGTGKSTIVLNLLLNL 753
++++ + + G GKS LLL
Sbjct: 20 GLVLVDIWKRGGDRTNSNWTILAKPGAGKSFTAKMLLLRE 59
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.3 bits (65), Expect = 7.2
Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 26/111 (23%)
Query: 277 IQVMLDDHIL-RAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYL---- 331
IQV + + + P + E + +L
Sbjct: 120 IQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKG-----------KKFLVIAY 168
Query: 332 EP-------IFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHI--LQ 373
EP + +E + + + N VD++ K + + + +Q
Sbjct: 169 EPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFW-DAISKLYYVQ 218
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 29.7 bits (67), Expect = 7.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 734 FVGPTGTGKSTIVLNL 749
+G TG+GKST++
Sbjct: 52 LLGRTGSGKSTLLSAF 67
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 29.0 bits (66), Expect = 8.3
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Query: 731 PMMFV--GPTGTGKSTIVLNLLLNLSKDKYLPNIINFS 766
++ V GP+G GK T+ + + +S
Sbjct: 6 GLLIVLSGPSGVGKGTVRKRIF------EDPSTSYKYS 37
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A
{Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Length = 570
Score = 29.6 bits (67), Expect = 8.6
Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 44/150 (29%)
Query: 924 QTVTRVDLVDIIYITA----MIPTMNTITGRL------LRHMNIISIDSFNEATLSKIFT 973
Q + DL+++ +TA + P + R SFNE + I
Sbjct: 33 QPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHR--GSAGRHSFNEPHILAIAQ 90
Query: 974 SVLDW-----------------HFSKGFADSIVKLSKNIVAAT--FHVYSESTKVFLPIP 1014
++ + S+ S+++ V A V + F P P
Sbjct: 91 AIAEERAKNGITGPCYVGKDTHALSEPAFISVLE-----VLAANGVDVIVQENNGFTPTP 145
Query: 1015 SKSHYVFNLRDFAKV----IMGLTQLPASH 1040
+ S+ + I+ +T SH
Sbjct: 146 AVSNAILVHNKKGGPLADGIV-IT---PSH 171
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 29.1 bits (66), Expect = 8.7
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 731 PMMFV--GPTGTGKSTIVLNLL 750
+ V GP+ GKST+V L
Sbjct: 20 GRVVVLSGPSAVGKSTVVRCLR 41
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM
NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A*
1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A*
3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A*
8cat_A*
Length = 497
Score = 29.8 bits (68), Expect = 8.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 1020 VFNLRD---FAKVIMGLTQLPASHCKAPDKMYKLWT------HEILRVFSDR 1062
+F +RD F I + P +H K PD ++ W+ H++ +FSDR
Sbjct: 148 IFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDR 199
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 29.7 bits (67), Expect = 8.8
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 666 EGPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLI 709
GP G K+ ++ L A + F P ++
Sbjct: 47 LGPPGIAKSLIARRLKFAF-QNARAF----EYLMTRFSTPEEVF 85
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 29.5 bits (67), Expect = 9.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 734 FVGPTGTGKST 744
GPTG+GKST
Sbjct: 128 VTGPTGSGKST 138
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 29.5 bits (67), Expect = 9.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 734 FVGPTGTGKST 744
GPTG+GKST
Sbjct: 141 VTGPTGSGKST 151
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 29.4 bits (66), Expect = 9.7
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 735 VGPTGTGKSTIVLNLLLN 752
G GK+ +L ++
Sbjct: 25 DLHPGAGKTKRILPSIVR 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.396
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 23,180,824
Number of extensions: 1464705
Number of successful extensions: 4166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4085
Number of HSP's successfully gapped: 168
Length of query: 1513
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1407
Effective length of database: 3,742,167
Effective search space: 5265228969
Effective search space used: 5265228969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.3 bits)