RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4730
(1513 letters)
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 35.8 bits (81), Expect = 0.030
Identities = 15/104 (14%), Positives = 30/104 (28%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYG 791
+ G +GTGK+ + L N + P + T +I + D + G
Sbjct: 29 TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 88
Query: 792 PAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQD 835
G + + + + I + + D
Sbjct: 89 KLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSID 132
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 35.9 bits (81), Expect = 0.032
Identities = 33/277 (11%), Positives = 76/277 (27%), Gaps = 17/277 (6%)
Query: 695 DRPTFPPNLRPSDLIIPTNVTCMQNFFINLYLQND----VPMMFVGPTGTGKSTIVLNLL 750
D F P+ P L + + +L+N +G GTGK+ + L
Sbjct: 5 DDSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLW 64
Query: 751 LNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKY 810
+ + R + P G F+A ++
Sbjct: 65 ELYKDKTTARFVYI----NGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR 120
Query: 811 PEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAK 870
+VL ++ F + D ++ + +
Sbjct: 121 ERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG 180
Query: 871 RNAQ-ATDWYIEKIIQVYEMILDDLNMPQKETYGAQPAVELLRQIIDHKHLYDFQTVTRV 929
+ + Q+++++LD E ++ ++++ I + D
Sbjct: 181 IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDAR 240
Query: 930 DLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEA 966
+DI+Y +A I+ + ++
Sbjct: 241 LAIDILYRSAYAAQQ--------NGRKHIAPEDVRKS 269
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 35.1 bits (80), Expect = 0.043
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAK 781
+M VG GTGK+T L K + ++ + + Q + +
Sbjct: 15 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQ 64
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 34.6 bits (78), Expect = 0.070
Identities = 11/54 (20%), Positives = 17/54 (31%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRR 785
V P G GKS + L L ++ L + + E + R
Sbjct: 32 GALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHR 85
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 33.6 bits (76), Expect = 0.14
Identities = 13/60 (21%), Positives = 23/60 (38%)
Query: 722 INLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAK 781
+N+ + +M VG GTGK+T L + + ++ I Q I +
Sbjct: 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGE 63
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 33.0 bits (74), Expect = 0.15
Identities = 24/172 (13%), Positives = 51/172 (29%), Gaps = 10/172 (5%)
Query: 733 MFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGP 792
+ G G G +T + NL K+ +++F + +E +++ D+ RK
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPET 64
Query: 793 AMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIEL 852
+ + KI K+ V V +L + +
Sbjct: 65 QKRIQKMAGR----KIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVE 120
Query: 853 PPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGA 904
++I + + D I+ ++ + M GA
Sbjct: 121 TTG------DEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGA 166
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 33.2 bits (75), Expect = 0.18
Identities = 10/50 (20%), Positives = 16/50 (32%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAK 781
++ VG G GK+T + L ++ TQ K
Sbjct: 9 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGK 58
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 32.4 bits (73), Expect = 0.26
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMI 778
VG G+GK+T L L P ++ T +E +
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD--TQRPAAREQL 57
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 32.3 bits (72), Expect = 0.27
Identities = 15/159 (9%), Positives = 47/159 (29%), Gaps = 2/159 (1%)
Query: 734 FVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPA 793
F +GTGK+T++ L+ L P +I + ++ + + R+
Sbjct: 7 FAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH-HDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 794 MGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELP 853
++ + + + + + + + + + G
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 854 PTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILD 892
D + + + N I + + + +++
Sbjct: 126 ELVIDRHVIAV-ASDVPLNLDVALLDINDVEGLADFVVE 163
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 31.8 bits (71), Expect = 0.37
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 733 MFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGP 792
+ +G TG GKS ++L + + I NI + I ++
Sbjct: 7 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR 66
Query: 793 AMGKKYIVFIAGSL-------KIKYPEKDEFVIVLRAIIDVNMPKFLV 833
++ + Y AG+L + + ++ R NM L+
Sbjct: 67 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLI 114
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 32.2 bits (72), Expect = 0.49
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSK 755
++ G TGTGKS ++ L
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLL 76
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 31.6 bits (71), Expect = 0.52
Identities = 9/58 (15%), Positives = 22/58 (37%)
Query: 722 INLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIM 779
+N+ + ++ VG G GK+T + L + + ++ + Q +
Sbjct: 2 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVW 59
>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 119
Score = 30.1 bits (68), Expect = 0.63
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 633 YLGNSDRLVITPLTDRCY----RTLMSALKLHLGG--APEGPAGTGKTETSKDLAK 682
+L + RLV P Y R+ A + G AP GP+GT K + + K
Sbjct: 55 FLRHDGRLVARPEPATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGK 110
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 31.3 bits (69), Expect = 0.70
Identities = 11/70 (15%), Positives = 17/70 (24%)
Query: 734 FVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPA 793
G TGK+ I L + + + T R G+ G
Sbjct: 28 MFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD 87
Query: 794 MGKKYIVFIA 803
+ A
Sbjct: 88 VLDNVAYARA 97
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 31.3 bits (70), Expect = 0.75
Identities = 31/209 (14%), Positives = 74/209 (35%), Gaps = 23/209 (11%)
Query: 729 DVPMM-FVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRK 787
D+P + VG +GKS+ VL ++ +LP S I +
Sbjct: 23 DLPQIVVVGSQSSGKSS-VLENIVGRD---FLP--------RGSGIVTRRPLILQLTHLP 70
Query: 788 GVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLF 847
+ +++ F+ + Y + ++R + + P+ + IY
Sbjct: 71 IADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHV 130
Query: 848 PG---IELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGA 904
++LP + + ++ ++ + YI+K + +
Sbjct: 131 VNLTLVDLPGITKVP-VGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN----- 184
Query: 905 QPAVELLRQIIDHKHLYDFQTVTRVDLVD 933
A++L ++ +D + +T++DL+D
Sbjct: 185 SDALQLAKE-VDPEGKRTIGVITKLDLMD 212
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 31.0 bits (70), Expect = 0.90
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 717 MQNFF--INLYLQNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNIT 774
M+ I + P++ G +G GK + L+ LS P + ++I
Sbjct: 9 MKEILEKIKKISCAECPVLITGESGVGKEVVA-RLIHKLSDRSKEPFVALN----VASIP 63
Query: 775 QEMIMAKLDRRRKGVYGPAMGKK 797
+++ A+L KG + A+ K
Sbjct: 64 RDIFEAELFGYEKGAFTGAVSSK 86
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 30.4 bits (67), Expect = 1.3
Identities = 22/156 (14%), Positives = 41/156 (26%), Gaps = 6/156 (3%)
Query: 733 MFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGP 792
+ G G GKST++ + L IIN+ + + D RK
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64
Query: 793 AMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIEL 852
+ + + + + I A+I + I + +E
Sbjct: 65 QKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEA 124
Query: 853 PPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYE 888
P + D+ E +I
Sbjct: 125 DP------KIILSRQKRDTTRNRNDYSDESVILETI 154
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 30.5 bits (69), Expect = 1.4
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 734 FVGPTGTGKSTIVLNLLLNL 753
FVG +G GKST+ +NL+
Sbjct: 49 FVGMSGGGKSTL-INLIPRF 67
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 30.4 bits (68), Expect = 1.6
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 655 SALKLHLGGAPE-------GPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
LK + P+ GP +GKT + L + + + N
Sbjct: 142 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL 189
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 30.2 bits (68), Expect = 1.7
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 734 FVGPTGTGKSTIVLNLLLNL 753
F GP+G GKSTI +LL
Sbjct: 33 FAGPSGGGKSTI-FSLLERF 51
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 30.3 bits (68), Expect = 1.7
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 734 FVGPTGTGKSTIVLNLLLNL 753
G TG+GK+++ L L+L
Sbjct: 67 ITGSTGSGKTSL-LMLILGE 85
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 30.3 bits (67), Expect = 1.8
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 667 GPAGTGKTETSKDLAKAVAKQCIVFNCSD 695
G G+GKT + + IV +
Sbjct: 39 GQPGSGKTSLRSAIFEETQGNVIVIDNDT 67
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.9 bits (66), Expect = 1.9
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINF 765
++ G TGTGK+ +V + N +K + +
Sbjct: 29 ILATGATGTGKTLLVSRFVENACANKERAILFAY 62
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 29.6 bits (66), Expect = 1.9
Identities = 21/173 (12%), Positives = 58/173 (33%), Gaps = 12/173 (6%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSKDKY-LPNIINFSARTSSNITQEMIMAKLDRRRKGVY 790
++ G + + L L + K +++ NI + I D Y
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP-EGENIGIDDIRTIKDFLN---Y 73
Query: 791 GPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLP-LFIGIYKDLFPG 849
P + + V + ++ + F+ L + + + L I +F
Sbjct: 74 SPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRV 133
Query: 850 IELPPTDRDELIEQI------KINLAKRNAQATDWYIEKIIQVYEMILDDLNM 896
+ P + +L+++ ++ L +R+ + + + +++ L +
Sbjct: 134 VVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKLSGLMESLKV 186
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 29.7 bits (65), Expect = 2.0
Identities = 4/31 (12%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 721 FINLYLQNDVP--MMFVGPTGTGKSTIVLNL 749
+ Y ++ G G ++ L
Sbjct: 14 LVASYQAGRGHHALLIQALPGMGDDALIYAL 44
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 29.9 bits (67), Expect = 2.1
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 734 FVGPTGTGKSTIVLNLLLNL 753
VG +G+GKST+ L+
Sbjct: 34 IVGRSGSGKSTL-TKLIQRF 52
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 29.7 bits (65), Expect = 2.2
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 15/111 (13%)
Query: 704 RP---SDLIIPTNVTCMQNFFINLYLQNDVP-MMFVGPTGTGKST---IVLNLLLNLSKD 756
RP ++ + ++P M+F GP GTGK++ + L
Sbjct: 7 RPKNLDEVTAQDHAV---TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLM 63
Query: 757 KYLPNIINFSARTSSNITQEMI-----MAKLDRRRKGVYGPAMGKKYIVFI 802
K +N S +I +E + + + + I+ +
Sbjct: 64 KSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIIL 114
>d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 598
Score = 30.1 bits (67), Expect = 2.3
Identities = 33/234 (14%), Positives = 74/234 (31%), Gaps = 16/234 (6%)
Query: 224 NILPKLEEVSLSASKEAELSQSLNKMVTEWSDIKLDVVPYRDTGTYIIQGTDEIQVMLDD 283
L KL +L AEL +L+ M + ++ +K V Y+D+ + EI+ ++
Sbjct: 76 KALTKLGYAALPEDDYAELLDTLSAMESNFAKVK--VCDYKDSTKCDLALDPEIEEVISK 133
Query: 284 HILRAQTMRGSPYIKPFETEMEAWESKLINMQDILDIWLQVQGTWMYLEPIFSSEDIMRQ 343
+ E ++ ++ + ++++ L S +
Sbjct: 134 SRDHEEL---------AYYWREFYDKAGTAVRSQFERYVELNTKAAKLNNFTSGAEAWLD 184
Query: 344 MPEESRNFKTVDQIWKTIM----LFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLN 399
E+ + ++ I+ I L+ + + + M L
Sbjct: 185 EYEDDTFEQQLEDIFADIRPLYQQIHGYVRFRLRKHYGDA-VVSETGPIPMHLLGNMWAQ 243
Query: 400 DYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEGINLLEYSDSL 453
+ E + P D E+ + PL++ F +NL +
Sbjct: 244 QWSEIADIVSPFPEKPLVDVSAEMEKQAYTPLKMFQMGDDFFTSMNLTKLPQDF 297
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 74
Score = 27.4 bits (61), Expect = 2.5
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 66 LLDLLQKDRTTARQINEEQELLKMVRTNYETVDEMLERLEPFDQLWSIILE 116
++ LL+K A+ I + ++ L + + + +E+L R F +++ ILE
Sbjct: 17 IISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVLRRAGEFREIFEKILE 67
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.2 bits (64), Expect = 2.6
Identities = 18/113 (15%), Positives = 37/113 (32%)
Query: 728 NDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRK 787
ND + G G GKS++VL + ++ Y+P + + + S + D
Sbjct: 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 60
Query: 788 GVYGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFI 840
+ A L + + + K V+ +P+ +
Sbjct: 61 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIML 113
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 29.2 bits (64), Expect = 2.7
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSKDK 757
+ GP G GK+T++ L
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSG 29
Score = 28.4 bits (62), Expect = 4.6
Identities = 19/207 (9%), Positives = 49/207 (23%), Gaps = 28/207 (13%)
Query: 667 GPAGTGKTETSKDLAKAVAKQCIVFNCSDRPTFPPNLRPSDLIIPTNVTCMQNFFINLYL 726
GP G GKT ++ + + + R F +
Sbjct: 8 GPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGR------------RIGFDVVTLS 55
Query: 727 QNDVPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRR 786
P+ + + S + +
Sbjct: 56 GTRGPLS---------RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQ 106
Query: 787 KGVYGPAMGKKYI-VFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKD 845
+ +GK + + + +I+ + P LV+++ +
Sbjct: 107 RVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEI-----RNRK 161
Query: 846 LFPGIELPPTDRDELIEQIKINLAKRN 872
+ +R+ L+ I + + +
Sbjct: 162 DVKVFNVTKENRNHLLPDI-VTCVQSS 187
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 29.5 bits (66), Expect = 3.0
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 734 FVGPTGTGKSTIVLNLLLNL 753
VGP G+GKST+ LL NL
Sbjct: 45 LVGPNGSGKSTV-AALLQNL 63
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.7 bits (63), Expect = 3.1
Identities = 21/134 (15%), Positives = 43/134 (32%)
Query: 733 MFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGP 792
+ +G G GKS + + + +KY P I +F + + ++ LD +
Sbjct: 7 VVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS 66
Query: 793 AMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIEL 852
L + F + + K + + +G DL E+
Sbjct: 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREV 126
Query: 853 PPTDRDELIEQIKI 866
++ L E+
Sbjct: 127 SSSEGRALAEEWGC 140
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 29.4 bits (66), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 734 FVGPTGTGKSTIVLNLLLNL 753
VG +G+GKSTI +L+
Sbjct: 46 LVGRSGSGKSTI-ASLITRF 64
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 29.3 bits (64), Expect = 3.7
Identities = 23/247 (9%), Positives = 63/247 (25%), Gaps = 14/247 (5%)
Query: 732 MMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYG 791
+ +G TGKS+I+ + L+ + + I+ + + +L + +
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIY--LDLRKFEERNYISYKDFLLELQKEINKLVK 89
Query: 792 PAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIE 851
+ + I E + N+ + Q + I D +
Sbjct: 90 RLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 149
Query: 852 LPPTDR----DELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQPA 907
+ + + + ++V + +
Sbjct: 150 KLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFS 209
Query: 908 VELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEAT 967
E + + + + + D + IP G L I + +
Sbjct: 210 REEAIEFL--RRGFQEADIDFKDYEVVYEKIGGIP------GWLTYFGFIYLDNKNLDFA 261
Query: 968 LSKIFTS 974
+++
Sbjct: 262 INQTLEY 268
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 29.3 bits (64), Expect = 3.7
Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 9/135 (6%)
Query: 733 MFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGP 792
+GP G+GKS ++ + L S SNI +++I +
Sbjct: 29 SIIGPNGSGKSNMMDAISFVLGVR---------SNHLRSNILKDLIYRGVLNDENSDDYD 79
Query: 793 AMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIEL 852
G + +K Y + ++ V ++R I + + + Y +
Sbjct: 80 NEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENI 139
Query: 853 PPTDRDELIEQIKIN 867
++ L+ Q +
Sbjct: 140 LIKAKNFLVFQGDVE 154
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 29.1 bits (64), Expect = 3.7
Identities = 9/59 (15%), Positives = 18/59 (30%)
Query: 736 GPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAM 794
G G GKST + L L+ + ++ ++ + R +
Sbjct: 58 GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 116
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 29.1 bits (64), Expect = 4.0
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 735 VGPTGTGKSTIVLNLLLNLSKDK 757
G GK+ L ++ + +
Sbjct: 15 DLHPGAGKTKRYLPAIVREAIKR 37
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 28.8 bits (63), Expect = 4.5
Identities = 32/240 (13%), Positives = 73/240 (30%), Gaps = 17/240 (7%)
Query: 703 LRP---SDLIIPTNVT-CMQNFFINLYLQNDVP--MMFVGPTGTGKSTIVLNLLLNLSKD 756
LRP + I + ++ + + + ++ GP G GK+T+ + L
Sbjct: 3 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV- 61
Query: 757 KYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYGPAMGKKYIVFIAGSLKIKYPEKDEF 816
N+ S + + + L YP ++F
Sbjct: 62 ----NLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHL---YPAMEDF 114
Query: 817 VIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINLAKRNAQAT 876
V+ + + + +LP F I PG+ + + A
Sbjct: 115 VMDIVIGQGPAA-RTIRLELPRFTLIGATTRPGL-ITAPLLSRFGIVEHLEYYTPEELAQ 172
Query: 877 DWYIEKIIQVYEMILDDLNMPQKETYG-AQPAVELLRQIIDHKHLYDFQTVTRVDLVDII 935
+ + + + + + G + A L R++ D + + +TR ++ +
Sbjct: 173 GVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEAL 232
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.4 bits (63), Expect = 4.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 728 NDVPMMFVGPTGTGKSTIVLNLLLN 752
V ++ G +G GKS L L+
Sbjct: 14 YGVGVLITGDSGIGKSETALELIKR 38
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 28.7 bits (64), Expect = 5.1
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 734 FVGPTGTGKSTIVLNLLLNLSKDK 757
VGP G GKST+ L + ++ K
Sbjct: 30 LVGPNGAGKSTL-LARMAGMTSGK 52
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 28.7 bits (64), Expect = 5.2
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 11/115 (9%)
Query: 734 FVGPTGTGKSTI--VLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGVYG 791
+G +G+GKST +N L S+ + N N + + ++ R +
Sbjct: 33 IIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 92
Query: 792 ---------PAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLP 837
M V A + + D L+ + V + + P
Sbjct: 93 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP 147
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.4 bits (62), Expect = 5.7
Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 25/195 (12%)
Query: 731 PMMFVGPTGTGKSTIVLNLLLNLSKDKYLP-NIINFSARTSSNITQEMIMAKLDRRRKGV 789
P++ GP+GTGKST++ L + + R ++ +D + +
Sbjct: 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMI 62
Query: 790 YGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDLFPG 849
+ Y V + + +Q + I +
Sbjct: 63 KNNEFIEWAQFS-----GNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARF 117
Query: 850 IELPPTDRDELIEQIKIN-------LAKRNAQATDWYIEKIIQVYEMIL--DDLNMPQKE 900
+ + P ++L ++++ + KR + A ++ ++ DDL+
Sbjct: 118 LFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDK---- 173
Query: 901 TYGAQPAVELLRQII 915
A + L+ I
Sbjct: 174 ------AYKELKDFI 182
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 28.0 bits (61), Expect = 6.1
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 733 MFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINF 765
+ VG GK+ ++++ N +Y+P + +
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN 39
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 28.2 bits (61), Expect = 6.3
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 704 RP---SDLIIPTNVTCMQNFFINLYLQNDVP--MMFVGPTGTGKSTIVLNLLLNLSKDKY 758
RP + L +T NF +L Q ++ GP GTGK T + LL ++
Sbjct: 6 RPKSLNALSHNEELT---NFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV 62
Query: 759 LPNIIN 764
I+
Sbjct: 63 YRLKID 68
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 28.1 bits (61), Expect = 6.3
Identities = 16/134 (11%), Positives = 39/134 (29%), Gaps = 1/134 (0%)
Query: 1356 VVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASH 1415
+VG GK++ + + IA T+ ++ + T+ + G + AS
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65
Query: 1416 EWRDGILAKTFREMA-VSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKM 1474
G+ V ++ + E ++ L+ + +
Sbjct: 66 GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL 125
Query: 1475 SNTMNLIFECENLE 1488
+ + L
Sbjct: 126 LEEEAVKALADALA 139
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 28.5 bits (62), Expect = 6.3
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 733 MFVGPTGTGKSTIV--LNLLLNLSKDKYL 759
VGP G+GKS I+ + + K L
Sbjct: 28 AIVGPNGSGKSNIIDAIKWVFGEQSKKEL 56
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 28.6 bits (62), Expect = 6.3
Identities = 22/245 (8%), Positives = 64/245 (26%), Gaps = 16/245 (6%)
Query: 730 VPMMFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGV 789
+ +G G GK+T+ + +S+ + A ++ + R+
Sbjct: 47 MIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTG 106
Query: 790 YGPAMGKKYIVFIAGSLKIKYPEKDEFVIVLRAIIDV--------NMPKFLVQDLPLFIG 841
Y + + I +L ++ +++V+ + + + I
Sbjct: 107 YPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP 166
Query: 842 IYKDLFPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKET 901
+ L + ++ + + +Q + E+ +
Sbjct: 167 SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL 226
Query: 902 YGAQPAVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISID 961
L I D + + + + + + +S D
Sbjct: 227 RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEA--------MGRDSLSED 278
Query: 962 SFNEA 966
+A
Sbjct: 279 LVRKA 283
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 27.5 bits (60), Expect = 6.4
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 735 VGPTGTGKSTIVLNLLLN 752
PTG+GKST V
Sbjct: 14 HAPTGSGKSTKVPAAYAA 31
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 28.1 bits (61), Expect = 6.5
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 733 MFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINF 765
+ VG GK+ +++ + + Y+P +
Sbjct: 6 VIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN 38
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}
Length = 370
Score = 28.4 bits (62), Expect = 6.5
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 10/66 (15%)
Query: 681 AKAVAKQCIVFNCSDRPTFPP----------NLRPSDLIIPTNVTCMQNFFINLYLQNDV 730
A + +V +CS + P L PS I+ + +C F +
Sbjct: 281 ASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSG 340
Query: 731 PMMFVG 736
+ +G
Sbjct: 341 ELWILG 346
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.9 bits (61), Expect = 7.2
Identities = 8/55 (14%), Positives = 18/55 (32%)
Query: 733 MFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINFSARTSSNITQEMIMAKLDRRRK 787
+ +G +G GK+T + N K++ + + + K
Sbjct: 9 LALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 63
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces
cerevisiae), proteinase A [TaxId: 4932]}
Length = 329
Score = 28.4 bits (62), Expect = 7.5
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 10/68 (14%)
Query: 681 AKAVAKQCIVFNCSDRPTFPP----------NLRPSDLIIPTNVTCMQNFFINLYLQNDV 730
AK +C+ R P + P D + + +C+ + +
Sbjct: 240 AKKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVG 299
Query: 731 PMMFVGPT 738
P+ VG
Sbjct: 300 PLAIVGDA 307
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.6 bits (61), Expect = 7.9
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 728 NDVPMMFVGPTGTGKSTIVLNLLLN 752
V ++ G +G GKS L+L+
Sbjct: 14 FGVGVLLTGRSGIGKSECALDLINK 38
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.1 bits (61), Expect = 8.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 734 FVGPTGTGKSTIVLNLLLNLSKDKYLPNIINF 765
F G G+GK+ I+ +NL ++L
Sbjct: 39 FAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEA 70
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 27.7 bits (60), Expect = 8.7
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 733 MFVGPTGTGKSTIVLNLLLNLSKDKYLPNIINF 765
+ VG + GK+ ++ + + Y+P +
Sbjct: 6 VVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN 38
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 28.2 bits (61), Expect = 8.9
Identities = 36/269 (13%), Positives = 79/269 (29%), Gaps = 14/269 (5%)
Query: 731 PMMFVGPTGTGKSTIVLNLLLNL-SKDKYLPNIINFSARTSSNITQEMIMAKLDRRRKGV 789
P + + G+GK+ ++ N + +L Y I T+ +EM +
Sbjct: 16 PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNK-AAREMKERVGQTLGRKE 74
Query: 790 YGPAMGKKYIVFIAGSLKIKYPE---KDEFVIVLRAIIDVNMPKFLVQDLPLFIGIYKDL 846
M + +K +Y K F + + + + + + L
Sbjct: 75 ARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQL 134
Query: 847 FPGIELPPTDRDELIEQIKINLAKRNAQATDWYIEKIIQVYEMILDDLNMPQKETYGAQP 906
I D + + +R+ Y + + D +
Sbjct: 135 ISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQ 194
Query: 907 AVELLRQIIDHKHLYDFQTVTRVDLVDIIYITAMIPTMNTITGRLLRHMNIISIDSFNEA 966
A E +R+ +K + V + + + + + + SI S+ A
Sbjct: 195 ANEEVRKRWQNK--IRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGA 252
Query: 967 TLSKIFTSVLDWHFSKGFADS-IVKLSKN 994
+ S+ F ++KL +N
Sbjct: 253 RPQNLV------LLSQDFPALKVIKLEQN 275
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 28.3 bits (61), Expect = 8.9
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 734 FVGPTGTGKSTIVLNLLLNLSKDKYLPNI 762
+G G+GKS+++ +L+ L + +I
Sbjct: 28 IIGQNGSGKSSLLDAILVGLYWPLRIKDI 56
>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT)
{Escherichia coli [TaxId: 562]}
Length = 311
Score = 28.0 bits (62), Expect = 9.2
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 1370 TLADSLTDIAAKK-----SATMKEFKTGYKIINPKSITMGQLYGEF 1410
+A L D+ A + T+ G +IN + + E
Sbjct: 52 RVAKILDDLCANQLQPLLLKTLLNRAEGALLINAVGVDDVKQADEM 97
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 27.5 bits (60), Expect = 9.7
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 734 FVGPTGTGKSTIVLNLLLNLSKDKYLPNII 763
VG +GK+T++ + ++ + +
Sbjct: 6 VVGYKHSGKTTLMEKWVAAAVREGWRVGTV 35
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 28.1 bits (62), Expect = 9.8
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 13/137 (9%)
Query: 1270 EKDEFVIVLRAIID---VNMPKFLVQDLPLFIGIYKDLFPGIELPPTDRDELIEQIKINL 1326
D VL ++ D V D +F + + E D + +++
Sbjct: 29 WFDHTSGVLESVEDGTPVLAIGVESGDAIVFDKNAQRIVAYKEKSVKAEDGSVSVVQVEN 88
Query: 1327 AKRNAQATDWYIEKIIQ-------VYEMILVRHG---LMVVGESFGGKTTAYQTLADSLT 1376
W ++ + V E R+ ++V G+ GKT L ++L
Sbjct: 89 GFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALG 148
Query: 1377 DIAAKKSATMKEFKTGY 1393
+ E +GY
Sbjct: 149 GKDKYATVRFGEPLSGY 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.396
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,657,856
Number of extensions: 279858
Number of successful extensions: 1238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1235
Number of HSP's successfully gapped: 135
Length of query: 1513
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1416
Effective length of database: 1,075,786
Effective search space: 1523312976
Effective search space used: 1523312976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.2 bits)