BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4731
         (436 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O35161|CELR1_MOUSE Cadherin EGF LAG seven-pass G-type receptor 1 OS=Mus musculus
            GN=Celsr1 PE=2 SV=3
          Length = 3034

 Score = 37.4 bits (85), Expect = 0.26,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 99/233 (42%), Gaps = 26/233 (11%)

Query: 219  RSLSSNNTNNTNGNS-TTHVNGTNQALDTCSDESNLE-------PATQNN-KPDESTVPA 269
            RSL+ NNT +   +   T +  +  +LD+ + +  ++       PA  N+ +PD S +P 
Sbjct: 2751 RSLNCNNTYSEGPDMLRTALGESTASLDSTTRDEGVQKLSVSSGPARGNHGEPDASFIPR 2810

Query: 270  ASSLPSEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLG-AESDTNTNDLPDPS 328
             S     P+  S      SE SLD+ S  +++    T+DS    G AE   N    P  S
Sbjct: 2811 NSKKAHGPDSDSD-----SELSLDEHS--SSYASSHTSDSEDDGGEAEDKWNPAGGPAHS 2863

Query: 329  TP-----TNNPPA--PSQVEMDGADDNASAEPPLK-KTKLS-EPENEVANNGESSEAAKP 379
            TP      N+ PA  P +       +    EP LK +TK+S E   +   N      + P
Sbjct: 2864 TPKADALANHVPAGWPDESLAGSDSEELDTEPHLKVETKVSVELHRQAQGNHCGDRPSDP 2923

Query: 380  EKNGASEPESVSESEAPVTKEGEQKVPVEPTAPVPVESKTETLRVMLINNSSS 432
            E    ++P +V  S+    ++G  K  V    P+P +     LR  L +   S
Sbjct: 2924 ESGVLAKPVAVLSSQPQEQRKGILKNKVTYPPPLPEQPLKSRLREKLADCEQS 2976


>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus
            GN=Pds5a PE=2 SV=1
          Length = 1333

 Score = 32.7 bits (73), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 28/195 (14%)

Query: 218  IRSLSSNNTNNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEP 277
            +RS  +   +N N +S    +  N++ +  S+ S  E     N  +E+ V   S  P + 
Sbjct: 1156 VRSAGTETGSNINASSELSPSAGNRSREQSSEAS--ETGVSEN--EENPVRIISVTPVKS 1211

Query: 278  EDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAP 337
             DT   + + S++S    + GN  +D      V   GAE   N    PD     + PPAP
Sbjct: 1212 IDTVKNKEINSDQS----TQGNISSDRGKKRIVTAAGAE---NIQQKPDEKADESGPPAP 1264

Query: 338  SQVEMDGADDNASAEPPLKKTKLSEPE-NEVANNGESSEAAKPEKNGASEPESV--SESE 394
            S+             P   +   SE + N   N+  S   +K  K  A   ES+    ++
Sbjct: 1265 SK-------------PRRGRRPKSESQGNATKNDDLSKPVSKGRKRAAGSQESLEAGNAK 1311

Query: 395  APVTKEGEQK-VPVE 408
            AP  ++G +K VP E
Sbjct: 1312 APKLQDGAKKAVPAE 1326


>sp|Q70CQ4|UBP31_HUMAN Ubiquitin carboxyl-terminal hydrolase 31 OS=Homo sapiens GN=USP31
            PE=2 SV=2
          Length = 1352

 Score = 32.0 bits (71), Expect = 8.5,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 307  NDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENE 366
            N SV+   ++     + LP  S P +N    + V+   + D++    P+K+ K       
Sbjct: 959  NSSVVDTQSKHSAQGDRLPPLSGPFDNNNQIAYVDQSDSVDSS----PVKEVKAPSHPGS 1014

Query: 367  VANNGESSEAAKPEKNGASEPE 388
            +A   ES+    P   G SEPE
Sbjct: 1015 LAKKPESTTKRSPSSKGTSEPE 1036


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.126    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,522,161
Number of Sequences: 539616
Number of extensions: 7383022
Number of successful extensions: 76879
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 1557
Number of HSP's that attempted gapping in prelim test: 44255
Number of HSP's gapped (non-prelim): 18277
length of query: 436
length of database: 191,569,459
effective HSP length: 120
effective length of query: 316
effective length of database: 126,815,539
effective search space: 40073710324
effective search space used: 40073710324
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.9 bits)