Query psy4731
Match_columns 436
No_of_seqs 129 out of 153
Neff 2.9
Searched_HMMs 29240
Date Sat Aug 17 00:32:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fhg_A Mjogg, N-glycosylase/DN 97.6 0.00062 2.1E-08 61.9 12.0 83 112-205 111-201 (207)
2 3fhf_A Mjogg, N-glycosylase/DN 97.3 0.0021 7.1E-08 59.7 11.6 89 105-205 111-208 (214)
3 3n0u_A Probable N-glycosylase/ 96.9 0.0053 1.8E-07 57.0 10.6 82 111-204 122-212 (219)
4 4e9f_A Methyl-CPG-binding doma 94.2 0.026 9.1E-07 50.2 3.3 26 114-139 100-125 (161)
5 3s6i_A DNA-3-methyladenine gly 94.2 0.034 1.2E-06 51.5 4.1 32 113-144 134-167 (228)
6 2h56_A DNA-3-methyladenine gly 94.2 0.081 2.8E-06 48.9 6.6 32 113-144 133-166 (233)
7 3i0w_A 8-oxoguanine-DNA-glycos 94.1 0.035 1.2E-06 53.0 4.1 38 112-151 205-244 (290)
8 2xhi_A N-glycosylase/DNA lyase 93.9 0.25 8.6E-06 48.7 9.9 61 112-174 247-318 (360)
9 2yg9_A DNA-3-methyladenine gly 93.2 0.15 5.2E-06 46.9 6.5 33 112-144 140-174 (225)
10 1mpg_A ALKA, 3-methyladenine D 93.1 0.15 5.2E-06 48.0 6.6 41 111-152 200-242 (282)
11 3n5n_X A/G-specific adenine DN 93.1 0.15 5.2E-06 49.2 6.6 35 116-151 126-161 (287)
12 4b21_A Probable DNA-3-methylad 93.0 0.075 2.5E-06 49.5 4.2 32 113-144 145-178 (232)
13 2jhn_A ALKA, 3-methyladenine D 92.6 0.12 4.3E-06 49.0 5.2 72 71-144 161-237 (295)
14 1kg2_A A/G-specific adenine gl 92.5 0.19 6.4E-06 46.0 6.1 34 115-149 106-139 (225)
15 1pu6_A 3-methyladenine DNA gly 92.2 0.12 4.1E-06 47.3 4.4 37 113-150 116-152 (218)
16 3arc_U Photosystem II 12 kDa e 91.2 0.029 9.9E-07 46.8 -0.8 40 115-159 23-62 (97)
17 1kea_A Possible G-T mismatches 90.7 0.14 4.9E-06 46.7 3.2 34 115-149 112-145 (221)
18 3fsp_A A/G-specific adenine gl 89.6 0.65 2.2E-05 45.0 7.0 34 115-149 115-148 (369)
19 2abk_A Endonuclease III; DNA-r 89.3 0.15 5.1E-06 46.1 2.1 27 113-139 104-130 (211)
20 1s5l_U Photosystem II 12 kDa e 88.5 0.13 4.5E-06 45.6 1.2 39 115-158 60-98 (134)
21 1orn_A Endonuclease III; DNA r 88.3 0.23 7.8E-06 45.7 2.6 26 114-139 109-134 (226)
22 2duy_A Competence protein come 85.7 0.42 1.5E-05 36.5 2.5 38 116-158 25-62 (75)
23 2i5h_A Hypothetical protein AF 82.9 0.23 8E-06 46.7 -0.1 79 71-156 88-169 (205)
24 2a1j_B DNA excision repair pro 74.3 5.1 0.00017 31.5 5.3 41 93-138 12-52 (91)
25 2edu_A Kinesin-like protein KI 70.9 1.9 6.5E-05 34.6 2.1 39 117-156 39-77 (98)
26 2knc_B Integrin beta-3; transm 70.3 4.3 0.00015 32.7 3.9 30 7-36 3-32 (79)
27 1x2i_A HEF helicase/nuclease; 69.6 2.8 9.6E-05 30.9 2.6 23 116-138 44-66 (75)
28 2bcq_A DNA polymerase lambda; 67.0 3.3 0.00011 40.4 3.2 67 70-139 9-78 (335)
29 2fmp_A DNA polymerase beta; nu 65.2 4.9 0.00017 39.1 4.0 65 73-139 11-78 (335)
30 2ztd_A Holliday junction ATP-d 65.1 3.4 0.00012 38.4 2.8 28 114-141 84-111 (212)
31 1ixr_A Holliday junction DNA h 60.0 5 0.00017 36.6 2.8 27 114-140 68-94 (191)
32 1kft_A UVRC, excinuclease ABC 59.8 4.7 0.00016 30.8 2.3 20 118-137 56-75 (78)
33 1x2i_A HEF helicase/nuclease; 58.7 7.2 0.00025 28.7 3.1 25 114-138 10-34 (75)
34 2knc_A Integrin alpha-IIB; tra 58.0 9.2 0.00032 29.3 3.5 20 9-28 7-26 (54)
35 1z00_A DNA excision repair pro 56.0 9 0.00031 29.8 3.3 24 115-138 16-39 (89)
36 2l8s_A Integrin alpha-1; trans 54.5 21 0.00072 27.4 5.0 41 12-52 7-48 (54)
37 1cuk_A RUVA protein; DNA repai 54.0 6.4 0.00022 36.1 2.5 27 114-140 69-95 (203)
38 2k1a_A Integrin alpha-IIB; sin 51.7 14 0.00047 26.9 3.4 21 8-28 4-24 (42)
39 3r8n_M 30S ribosomal protein S 49.4 12 0.0004 32.1 3.2 43 111-153 9-54 (114)
40 1z00_A DNA excision repair pro 49.3 10 0.00034 29.6 2.6 24 116-139 49-72 (89)
41 2a1j_A DNA repair endonuclease 49.0 5.8 0.0002 29.9 1.1 22 117-138 3-24 (63)
42 3hd7_A Vesicle-associated memb 47.5 17 0.00057 29.5 3.7 11 7-17 63-73 (91)
43 2a1j_B DNA excision repair pro 46.5 10 0.00035 29.8 2.3 23 116-138 62-84 (91)
44 2k9j_B Integrin beta-3; transm 45.7 23 0.00077 25.6 3.8 21 7-27 2-22 (43)
45 1kft_A UVRC, excinuclease ABC 45.7 7.5 0.00026 29.7 1.3 21 118-138 24-44 (78)
46 3vdp_A Recombination protein R 44.1 11 0.00039 35.5 2.6 22 113-134 21-42 (212)
47 3u5c_S 40S ribosomal protein S 40.2 13 0.00044 33.2 2.1 40 114-153 26-68 (146)
48 2ihm_A POL MU, DNA polymerase 39.8 24 0.00081 34.7 4.2 63 74-139 17-82 (360)
49 3iz6_M 40S ribosomal protein S 38.7 11 0.00039 33.7 1.6 42 111-152 21-65 (152)
50 2w9m_A Polymerase X; SAXS, DNA 38.0 17 0.00059 37.5 3.0 24 114-137 93-116 (578)
51 3j20_O 30S ribosomal protein S 38.0 24 0.00082 31.5 3.5 39 114-152 19-60 (148)
52 1jms_A Terminal deoxynucleotid 38.0 29 0.00099 34.5 4.5 64 73-139 35-101 (381)
53 2xzm_M RPS18E; ribosome, trans 37.7 19 0.00064 32.4 2.8 41 112-152 24-67 (155)
54 2fmp_A DNA polymerase beta; nu 36.3 19 0.00063 35.1 2.8 24 114-137 94-117 (335)
55 1wcn_A Transcription elongatio 35.9 3.4 0.00012 32.1 -2.0 50 98-149 19-69 (70)
56 1vdd_A Recombination protein R 35.5 19 0.00064 34.4 2.6 22 113-134 7-28 (228)
57 2f95_B Sensory rhodopsin II tr 35.2 22 0.00077 28.4 2.7 10 73-82 110-119 (163)
58 1z00_B DNA repair endonuclease 35.0 25 0.00086 28.2 2.9 24 115-138 15-38 (84)
59 2ihm_A POL MU, DNA polymerase 33.2 24 0.00083 34.6 3.1 25 113-137 97-121 (360)
60 2vqe_M 30S ribosomal protein S 33.0 20 0.0007 31.2 2.2 42 111-152 10-54 (126)
61 3b0x_A DNA polymerase beta fam 32.3 24 0.00082 36.3 3.0 24 114-137 89-112 (575)
62 3bqs_A Uncharacterized protein 30.3 29 0.001 28.4 2.6 58 117-175 3-63 (93)
63 3ory_A Flap endonuclease 1; hy 29.4 60 0.0021 32.0 5.1 68 122-201 255-337 (363)
64 1juo_A Sorcin; calcium-binding 29.4 2.4E+02 0.0082 23.3 8.4 148 44-201 28-192 (198)
65 1jms_A Terminal deoxynucleotid 29.2 31 0.0011 34.3 3.1 25 113-137 116-140 (381)
66 3mab_A Uncharacterized protein 28.6 16 0.00054 30.1 0.7 59 116-175 2-63 (93)
67 2bcq_A DNA polymerase lambda; 27.5 30 0.001 33.7 2.6 23 115-137 93-115 (335)
68 1vq8_Y 50S ribosomal protein L 25.9 14 0.00049 34.8 0.0 22 116-137 13-34 (241)
69 1gjy_A Sorcin, CP-22, V19; cal 25.7 2.5E+02 0.0086 22.3 8.5 41 159-200 120-160 (167)
70 2kp7_A Crossover junction endo 25.6 76 0.0026 25.6 4.2 28 108-135 48-75 (87)
71 3vmt_A Monofunctional glycosyl 24.9 80 0.0027 30.5 5.0 11 190-200 247-257 (263)
72 2bgw_A XPF endonuclease; hydro 24.0 49 0.0017 29.4 3.1 24 116-139 160-183 (219)
73 3oao_A Uncharacterized protein 23.9 68 0.0023 28.3 3.9 59 70-129 78-143 (147)
74 4glx_A DNA ligase; inhibitor, 21.9 44 0.0015 35.4 2.7 16 71-86 476-491 (586)
75 1k94_A Grancalcin; penta-EF-ha 21.6 3E+02 0.01 21.7 7.1 42 161-202 56-97 (165)
76 1gjy_A Sorcin, CP-22, V19; cal 21.1 2.6E+02 0.0088 22.2 6.6 42 160-201 57-98 (167)
No 1
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=97.59 E-value=0.00062 Score=61.88 Aligned_cols=83 Identities=23% Similarity=0.341 Sum_probs=61.7
Q ss_pred CHHHHHHHhhcCCCCcHHHHHHHHhh-cCCCCCccccHHHH-H---hc---CCCCCCccCHHHHHHHHHHHHHHHHHHhh
Q psy4731 112 NLELALSALSNLKGVGTTLASALLAA-ATPEVAPFMADECL-M---AI---PEIEGIDYTTKEYLKFVNFINNTVERLNK 183 (436)
Q Consensus 112 DV~aAL~~LTkLKGVGPATASAILAa-~~Pe~vPFFSDEAf-~---~l---pg~~kIKYTlKEYlell~~vr~LakRLn~ 183 (436)
+...+.+.|++||||||-||++||.. +.++ + |.-|--. . .+ ++......+.+.|.++...++..++.+
T Consensus 111 ~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~-~-~~vD~~v~Ri~~rlg~~~~~~~k~~~~k~y~~~~~~l~~~~~~~-- 186 (207)
T 3fhg_A 111 DQQLARERLLNIKGIGMQEASHFLRNVGYFD-L-AIIDRHIIDFMRRIGAIGETNVKQLSKSLYISFENILKSIASNL-- 186 (207)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHTTCCS-S-CCCCHHHHHHHHHTTSSCCCCCSCCCHHHHHHHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHcCCCcCHHHHHHHHHHhCCCC-c-ceecHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHHHHHh--
Confidence 45689999999999999999999995 5532 2 2334422 2 22 221234668999999999999999885
Q ss_pred hccCCCCCcChhHHHHHHHHHH
Q psy4731 184 ESKNGTGTWNAHQVELALWTHY 205 (436)
Q Consensus 184 e~~~g~~~wT~~dVEKALWAa~ 205 (436)
.+++..+..++|...
T Consensus 187 -------~~~~~~lDl~lw~~~ 201 (207)
T 3fhg_A 187 -------NMSVGILDLFIWYKE 201 (207)
T ss_dssp -------TSCHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHH
Confidence 588999999999764
No 2
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=97.28 E-value=0.0021 Score=59.67 Aligned_cols=89 Identities=20% Similarity=0.316 Sum_probs=66.8
Q ss_pred HHHhhCcCHHHHHHHhh-cCCCCcHHHHHHHHhhcCCCCCccc-cHHHHHh----c---CCCCCCccCHHHHHHHHHHHH
Q psy4731 105 KAFKKLPNLELALSALS-NLKGVGTTLASALLAAATPEVAPFM-ADECLMA----I---PEIEGIDYTTKEYLKFVNFIN 175 (436)
Q Consensus 105 kAF~~LpDV~aAL~~LT-kLKGVGPATASAILAa~~Pe~vPFF-SDEAf~~----l---pg~~kIKYTlKEYlell~~vr 175 (436)
+-|..+.++..+.+.|. +|+||||-||++||..+. ..+|+ -|--..- + +. .+-..+-+.|.++-..++
T Consensus 111 ~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g--~~~~~vVDthv~Ri~~RlG~~~~-~~k~lt~~~y~e~~~~l~ 187 (214)
T 3fhf_A 111 DIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVG--YDDVAIIDRHILRELYENNYIDE-IPKTLSRRKYLEIENILR 187 (214)
T ss_dssp HHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTT--CCSCCCCCHHHHHHHHHTTSSSS-CCSSCCHHHHHHHHHHHH
T ss_pred HHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcC--CCCcccCcHHHHHHHHHcCCCCC-CCCcCCHHHHHHHHHHHH
Confidence 34444457889999999 999999999999998653 24555 6763332 2 22 234567899999999999
Q ss_pred HHHHHHhhhccCCCCCcChhHHHHHHHHHH
Q psy4731 176 NTVERLNKESKNGTGTWNAHQVELALWTHY 205 (436)
Q Consensus 176 ~LakRLn~e~~~g~~~wT~~dVEKALWAa~ 205 (436)
..++++ .+++..+-..+|...
T Consensus 188 ~~g~~~---------g~~~g~lDl~lW~~~ 208 (214)
T 3fhf_A 188 DIGEEV---------NLKLSELDLYIWYLR 208 (214)
T ss_dssp HHHHHT---------TCCHHHHHHHHHHHH
T ss_pred HHHHHH---------CCCHHHHHHHHHHHH
Confidence 999997 478899999999763
No 3
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=96.92 E-value=0.0053 Score=57.05 Aligned_cols=82 Identities=23% Similarity=0.294 Sum_probs=61.8
Q ss_pred cCHHHHHHHhh-cCCCCcHHHHHHHHhh-cCCCCCccccHH-HHHh------cCCCCCCccCHHHHHHHHHHHHHHHHHH
Q psy4731 111 PNLELALSALS-NLKGVGTTLASALLAA-ATPEVAPFMADE-CLMA------IPEIEGIDYTTKEYLKFVNFINNTVERL 181 (436)
Q Consensus 111 pDV~aAL~~LT-kLKGVGPATASAILAa-~~Pe~vPFFSDE-Af~~------lpg~~kIKYTlKEYlell~~vr~LakRL 181 (436)
.++..+.+.|+ +|+||||-||+.||.. +.++. |.-|- +... +++ .+...|-|.|+++-+.++++++++
T Consensus 122 ~~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~~~--~~VDthv~Ri~~rlg~~~~-~~k~~t~k~y~~ie~~~~~~a~~~ 198 (219)
T 3n0u_A 122 GDPFQSREFLVRNAKGIGWKEASHFLRNTGVEDL--AILDKHVLRLMKRHGLIQE-IPKGWSKKRYLYVEEILRKVAEAF 198 (219)
T ss_dssp SCHHHHHHHHHHHSTTCCHHHHHHHHHTTTCCSC--CCCCHHHHHHHHHTTSCSS-CCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCe--eeecHHHHHHHHHcCCCCc-CcCcCCHHHHHHHHHHHHHHHHHH
Confidence 35778999999 9999999999999975 33223 33454 3322 122 234678899999999999999997
Q ss_pred hhhccCCCCCcChhHHHHHHHHH
Q psy4731 182 NKESKNGTGTWNAHQVELALWTH 204 (436)
Q Consensus 182 n~e~~~g~~~wT~~dVEKALWAa 204 (436)
.+++..+-..+|..
T Consensus 199 ---------g~~~~~ldl~lW~~ 212 (219)
T 3n0u_A 199 ---------GESPGKFDLYLWYL 212 (219)
T ss_dssp ---------TCCHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHH
Confidence 47899999999875
No 4
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=94.24 E-value=0.026 Score=50.21 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731 114 ELALSALSNLKGVGTTLASALLAAAT 139 (436)
Q Consensus 114 ~aAL~~LTkLKGVGPATASAILAa~~ 139 (436)
....+.|.+|+||||-||.++++++.
T Consensus 100 p~~~~~L~~LpGVG~yTAdav~~F~~ 125 (161)
T 4e9f_A 100 TKQWKYPIELHGIGKYGNDSYRIFCV 125 (161)
T ss_dssp HSCCSSGGGSTTCCHHHHHHHHHHTS
T ss_pred CCChhhhhcCCCchHHHHHHHHHHHC
Confidence 34567889999999999999998865
No 5
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=94.20 E-value=0.034 Score=51.47 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHhhc--CCCCCc
Q psy4731 113 LELALSALSNLKGVGTTLASALLAAA--TPEVAP 144 (436)
Q Consensus 113 V~aAL~~LTkLKGVGPATASAILAa~--~Pe~vP 144 (436)
...+++.|+.||||||-||..||..+ .|+.+|
T Consensus 134 ~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fp 167 (228)
T 3s6i_A 134 NEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMP 167 (228)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEe
Confidence 46789999999999999999999765 455555
No 6
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=94.17 E-value=0.081 Score=48.89 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHhhc--CCCCCc
Q psy4731 113 LELALSALSNLKGVGTTLASALLAAA--TPEVAP 144 (436)
Q Consensus 113 V~aAL~~LTkLKGVGPATASAILAa~--~Pe~vP 144 (436)
...+++.|++|+||||-||.+||..+ .|+.+|
T Consensus 133 ~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~p 166 (233)
T 2h56_A 133 ATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLS 166 (233)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCC
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee
Confidence 35799999999999999999999875 355444
No 7
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=94.12 E-value=0.035 Score=53.01 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=31.4
Q ss_pred CHHHHHHHhhcCCCCcHHHHHHHHhh--cCCCCCccccHHHH
Q psy4731 112 NLELALSALSNLKGVGTTLASALLAA--ATPEVAPFMADECL 151 (436)
Q Consensus 112 DV~aAL~~LTkLKGVGPATASAILAa--~~Pe~vPFFSDEAf 151 (436)
+...+.+.|++||||||-||..||.. ..|+.+|. |=..
T Consensus 205 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv--D~~v 244 (290)
T 3i0w_A 205 NDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV--DTWV 244 (290)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC--CHHH
T ss_pred CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCccee--cHHH
Confidence 46789999999999999999999865 46888885 7543
No 8
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=93.93 E-value=0.25 Score=48.73 Aligned_cols=61 Identities=26% Similarity=0.325 Sum_probs=40.2
Q ss_pred CHHHHHHHhhcCCCCcHHHHHHHHhhc--CCCCCccccHH----HHHh-c---CCCCC-CccCHHHHHHHHHHH
Q psy4731 112 NLELALSALSNLKGVGTTLASALLAAA--TPEVAPFMADE----CLMA-I---PEIEG-IDYTTKEYLKFVNFI 174 (436)
Q Consensus 112 DV~aAL~~LTkLKGVGPATASAILAa~--~Pe~vPFFSDE----Af~~-l---pg~~k-IKYTlKEYlell~~v 174 (436)
+...+++.|++|+||||-||..||..+ .|+.+|. |- .+.. + ++... ...+.+.|.++...+
T Consensus 247 ~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpv--DthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~~ 318 (360)
T 2xhi_A 247 SYEEAHKALCILPGVGTCVADKICLMALDKPQAVPV--NVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFF 318 (360)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCC--SHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEe--cHHHHHHHHHHhCcccccccccCCChHHHHHHHHHH
Confidence 356899999999999999999999765 5766664 62 1111 1 22111 223567787776655
No 9
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=93.21 E-value=0.15 Score=46.94 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=27.1
Q ss_pred CHHHHHHHhhcCCCCcHHHHHHHHhhcC--CCCCc
Q psy4731 112 NLELALSALSNLKGVGTTLASALLAAAT--PEVAP 144 (436)
Q Consensus 112 DV~aAL~~LTkLKGVGPATASAILAa~~--Pe~vP 144 (436)
+...+++.|+.||||||-||..||.... |+.+|
T Consensus 140 ~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fp 174 (225)
T 2yg9_A 140 PDELVIAELVQLPGIGRWTAEMFLLFALARPDVFS 174 (225)
T ss_dssp CHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCC
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeee
Confidence 4567899999999999999999998753 55545
No 10
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=93.14 E-value=0.15 Score=47.97 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=30.8
Q ss_pred cCHHHHHHHhhcCCCCcHHHHHHHHhhcC--CCCCccccHHHHH
Q psy4731 111 PNLELALSALSNLKGVGTTLASALLAAAT--PEVAPFMADECLM 152 (436)
Q Consensus 111 pDV~aAL~~LTkLKGVGPATASAILAa~~--Pe~vPFFSDEAf~ 152 (436)
.+...+++.|++||||||-||..||..+. |+.+| ..|=.+.
T Consensus 200 ~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~p-vdd~~~r 242 (282)
T 1mpg_A 200 GDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFL-PDDYLIK 242 (282)
T ss_dssp SCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCC-TTCHHHH
T ss_pred CCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCc-cccHHHH
Confidence 36788999999999999999999998764 54443 3444433
No 11
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=93.07 E-value=0.15 Score=49.22 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=26.4
Q ss_pred HHHHhhc-CCCCcHHHHHHHHhhcCCCCCccccHHHH
Q psy4731 116 ALSALSN-LKGVGTTLASALLAAATPEVAPFMADECL 151 (436)
Q Consensus 116 AL~~LTk-LKGVGPATASAILAa~~Pe~vPFFSDEAf 151 (436)
.++.|.+ |+||||-||.+||..+.-. ..|.-|--.
T Consensus 126 ~~~~Ll~~LpGIG~kTA~~iL~~a~g~-p~~~VDt~V 161 (287)
T 3n5n_X 126 TAETLQQLLPGVGRYTAGAIASIAFGQ-ATGVVDGNV 161 (287)
T ss_dssp SHHHHHHHSTTCCHHHHHHHHHHHSCC-CCCCCCHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhcCC-CCccccHHH
Confidence 5788887 9999999999999987632 235556533
No 12
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=93.03 E-value=0.075 Score=49.46 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=26.6
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHhhcC--CCCCc
Q psy4731 113 LELALSALSNLKGVGTTLASALLAAAT--PEVAP 144 (436)
Q Consensus 113 V~aAL~~LTkLKGVGPATASAILAa~~--Pe~vP 144 (436)
...+++.|+.||||||-||..||..+. |+.+|
T Consensus 145 ~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fp 178 (232)
T 4b21_A 145 EEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMP 178 (232)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee
Confidence 457899999999999999999998764 55555
No 13
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=92.59 E-value=0.12 Score=49.05 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=44.1
Q ss_pred CcCHHHHHHHHHHhhhhHHHHhhcCHHHHHHHHHH-HHh---hCcCHHHHHHHhhcCCCCcHHHHHHHHhhcC-CCCCc
Q psy4731 71 HLNHEELVQLMKWKQTLNYLVKVNTPRAVMMETKK-AFK---KLPNLELALSALSNLKGVGTTLASALLAAAT-PEVAP 144 (436)
Q Consensus 71 ~LTKDELVkLMEWKLtL~kLVkSN~e~~Ve~~Tkk-AF~---~LpDV~aAL~~LTkLKGVGPATASAILAa~~-Pe~vP 144 (436)
+.|-++|..+=.|.|+-.++-.. -...+.++++. -|. .++ ...+.+.|++||||||-||..||..+. |+.+|
T Consensus 161 fPtp~~la~~~~~~Lr~~G~~~r-Ka~~i~~~A~~g~l~~l~~~~-~~e~~~~L~~lpGIG~~TA~~ill~~lg~d~fp 237 (295)
T 2jhn_A 161 FPTQEAILKAGVEGLRECGLSRR-KAELIVEIAKEENLEELKEWG-EEEAYEYLTSFKGIGRWTAELVLSIALGKNVFP 237 (295)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHTCSSGGGGGGSC-HHHHHHHHHTSTTCCHHHHHHHHHHTTCCCCCC
T ss_pred CCCHHHHHcCCHHHHHHcCCCHH-HHHHHHHHHHCCCHhhhhcCC-HHHHHHHHhcCCCcCHHHHHHHHHHccCCCccc
Confidence 67889998887777761111000 01223333222 122 233 367899999999999999999998643 54444
No 14
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=92.51 E-value=0.19 Score=45.98 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=25.9
Q ss_pred HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHH
Q psy4731 115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADE 149 (436)
Q Consensus 115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDE 149 (436)
.+++.|.+|+||||-||.+||..+.-. .-|.-|-
T Consensus 106 ~~~~~L~~lpGIG~~TA~~il~~a~~~-~~~~vD~ 139 (225)
T 1kg2_A 106 ETFEEVAALPGVGRSTAGAILSLSLGK-HFPILDG 139 (225)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCC-SCCCCCH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCC-CcceeCH
Confidence 368899999999999999999876422 2345665
No 15
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=92.23 E-value=0.12 Score=47.33 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHH
Q psy4731 113 LELALSALSNLKGVGTTLASALLAAATPEVAPFMADEC 150 (436)
Q Consensus 113 V~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEA 150 (436)
...+.+.|++||||||-||.+||..+.-. ..|--|--
T Consensus 116 ~~~~~~~L~~lpGIG~kTA~~il~~a~~~-~~~~vD~~ 152 (218)
T 1pu6_A 116 QEVTREWLLDQKGIGKESADAILCYACAK-EVMVVDKY 152 (218)
T ss_dssp HHCCHHHHHTSTTCCHHHHHHHHHHTTCC-SCCCCCHH
T ss_pred chHHHHHHHcCCCcCHHHHHHHHHHHCCC-CccccCHH
Confidence 45678899999999999999999976532 24445653
No 16
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=91.19 E-value=0.029 Score=46.76 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=33.5
Q ss_pred HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHhcCCCCC
Q psy4731 115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIEG 159 (436)
Q Consensus 115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~lpg~~k 159 (436)
+..+.|+.|+||||++|..|+. .-||-|=|-+.-++|...
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~-----~GpF~s~edL~~V~Gig~ 62 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPGLTE 62 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHH-----HCCCSSGGGGGGCTTCCH
T ss_pred CCHHHHhHCCCCCHHHHHHHHH-----cCCCCCHHHHHhccCCCH
Confidence 4567899999999999999998 469999888887877543
No 17
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=90.67 E-value=0.14 Score=46.70 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=26.0
Q ss_pred HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHH
Q psy4731 115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADE 149 (436)
Q Consensus 115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDE 149 (436)
.+++.|.+|+||||-||.+||..+.-.. -|.-|-
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~~~~~~-~~~vD~ 145 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCLAFGKK-AAMVDA 145 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHTTCCC-CCCCCH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHhcCCC-cceecH
Confidence 4678899999999999999999875322 344454
No 18
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=89.55 E-value=0.65 Score=45.03 Aligned_cols=34 Identities=29% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHH
Q psy4731 115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADE 149 (436)
Q Consensus 115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDE 149 (436)
.+++.|.+|+||||-||.+||..+.-.. -|.-|-
T Consensus 115 ~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~vD~ 148 (369)
T 3fsp_A 115 DDPDEFSRLKGVGPYTVGAVLSLAYGVP-EPAVDG 148 (369)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCC-CCCCCH
T ss_pred hHHHHHhcCCCcCHHHHHHHHHHHCCCC-cccccH
Confidence 4788899999999999999999875332 344454
No 19
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=89.30 E-value=0.15 Score=46.11 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731 113 LELALSALSNLKGVGTTLASALLAAAT 139 (436)
Q Consensus 113 V~aAL~~LTkLKGVGPATASAILAa~~ 139 (436)
+..+++.|.+||||||-||.+||..+.
T Consensus 104 ~~~~~~~L~~l~GIG~~tA~~il~~~~ 130 (211)
T 2abk_A 104 VPEDRAALEALPGVGRKTANVVLNTAF 130 (211)
T ss_dssp CCSCHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCCCChHHHHHHHHHHC
Confidence 345778899999999999999998763
No 20
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=88.52 E-value=0.13 Score=45.60 Aligned_cols=39 Identities=26% Similarity=0.460 Sum_probs=32.3
Q ss_pred HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHhcCCCC
Q psy4731 115 LALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIE 158 (436)
Q Consensus 115 aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~lpg~~ 158 (436)
+..+.|+.|+||||++|.+|. ++.||-|=|=++-++|..
T Consensus 60 A~~~eL~~LpGiGp~~A~~II-----~~GpF~svedL~~V~GIg 98 (134)
T 1s5l_U 60 TNIAAFIQYRGLYPTLAKLIV-----KNAPYESVEDVLNIPGLT 98 (134)
T ss_dssp SCGGGGGGSTTCTHHHHHHHH-----HTCCCSSGGGGGGCTTCC
T ss_pred cCHHHHHHCCCCCHHHHHHHH-----HcCCCCCHHHHHhCCCCC
Confidence 466789999999999999999 367999977777787754
No 21
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=88.28 E-value=0.23 Score=45.71 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.6
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731 114 ELALSALSNLKGVGTTLASALLAAAT 139 (436)
Q Consensus 114 ~aAL~~LTkLKGVGPATASAILAa~~ 139 (436)
..+++.|.+|+||||-||.+||..+.
T Consensus 109 p~~~~~L~~lpGIG~~TA~~il~~a~ 134 (226)
T 1orn_A 109 PRDRDELMKLPGVGRKTANVVVSVAF 134 (226)
T ss_dssp CSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHHC
Confidence 34788999999999999999998753
No 22
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=85.66 E-value=0.42 Score=36.46 Aligned_cols=38 Identities=29% Similarity=0.507 Sum_probs=30.0
Q ss_pred HHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHhcCCCC
Q psy4731 116 ALSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPEIE 158 (436)
Q Consensus 116 AL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~lpg~~ 158 (436)
....|..++||||.+|..|+... +|-+-|-+..++|.+
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r-----~~~s~~eL~~v~Gig 62 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGR-----PYARVEDLLKVKGIG 62 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTC-----CCSSGGGGGGSTTCC
T ss_pred CHHHHHhCCCCCHHHHHHHHHHc-----ccCCHHHHHhCCCCC
Confidence 45678899999999999999864 677766666677643
No 23
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=82.89 E-value=0.23 Score=46.70 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=53.7
Q ss_pred CcCHHHHHHHHHHhhh--hHHHHhhcCHHHHHHHHHHHHhhCcCHHHHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccH
Q psy4731 71 HLNHEELVQLMKWKQT--LNYLVKVNTPRAVMMETKKAFKKLPNLELALSALSNLKGVGTTLASALLAAATPEVAPFMAD 148 (436)
Q Consensus 71 ~LTKDELVkLMEWKLt--L~kLVkSN~e~~Ve~~TkkAF~~LpDV~aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSD 148 (436)
.|+-++|..--.--|. +.+.|+.|....|. . |..-..+.+.+..|..|+||||++|-+|+.-.. .-||-|=
T Consensus 88 ~i~y~~Lt~~Ak~~Lp~~v~~iV~~~E~~fv~-f----~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe--~G~F~s~ 160 (205)
T 2i5h_A 88 RLRYEDLTPAAKTELPYVIEHIIKQDEKKYVD-F----FNKADSITTRMHQLELLPGVGKKMMWAIIEERK--KRPFESF 160 (205)
T ss_dssp ECCGGGSCHHHHHHHHHHHHHHHHTTHHHHHH-H----HC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHH--HSCCCSH
T ss_pred eecHHHccHHHHhchHHHHHHHHHhchhhhhh-h----ccccCCccCCHHHHhcCCCcCHHHHHHHHHHHh--cCCCCCH
Confidence 4666666665444444 67777777555543 2 443334567788899999999999999998864 2799995
Q ss_pred HHH-HhcCC
Q psy4731 149 ECL-MAIPE 156 (436)
Q Consensus 149 EAf-~~lpg 156 (436)
|-+ .-++|
T Consensus 161 eDL~~RV~G 169 (205)
T 2i5h_A 161 EDIAQRVKG 169 (205)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHhcCC
Confidence 544 44776
No 24
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=74.30 E-value=5.1 Score=31.54 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=25.8
Q ss_pred hcCHHHHHHHHHHHHhhCcCHHHHHHHhhcCCCCcHHHHHHHHhhc
Q psy4731 93 VNTPRAVMMETKKAFKKLPNLELALSALSNLKGVGTTLASALLAAA 138 (436)
Q Consensus 93 SN~e~~Ve~~TkkAF~~LpDV~aAL~~LTkLKGVGPATASAILAa~ 138 (436)
.++++.++.-.+.-+ ....+..|..++||||.+|-.||..+
T Consensus 12 ~~~~~~~~~~~~~~~-----~~~~~~~L~~IpgIG~~~A~~Ll~~f 52 (91)
T 2a1j_B 12 QDPADLLMEKLEQDF-----VSRVTECLTTVKSVNKTDSQTLLTTF 52 (91)
T ss_dssp -CCSHHHHHHHHHHH-----HHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cCCHHHHhhhccCCH-----HHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 455555555444333 33456677788888888888888764
No 25
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=70.92 E-value=1.9 Score=34.64 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=29.2
Q ss_pred HHHhhcCCCCcHHHHHHHHhhcCCCCCccccHHHHHhcCC
Q psy4731 117 LSALSNLKGVGTTLASALLAAATPEVAPFMADECLMAIPE 156 (436)
Q Consensus 117 L~~LTkLKGVGPATASAILAa~~Pe~vPFFSDEAf~~lpg 156 (436)
...|..++||||.+|..|+..... .-+|-+=|-+..++|
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~-~g~f~s~edL~~v~G 77 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWREL-HGPFSQVEDLERVEG 77 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHH-HCCCSSGGGGGGSTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHh-cCCcCCHHHHHhCCC
Confidence 456788999999999999998642 347766555666665
No 26
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=70.29 E-value=4.3 Score=32.67 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=16.6
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4731 7 HYHKHHLWFIIIIIIIIIIIIIIIIIIIII 36 (436)
Q Consensus 7 ~~~~~~~~~~i~i~ii~~~ii~~i~~~~~~ 36 (436)
.|....+++.|++.|++.|++|.++++++.
T Consensus 3 ~Cp~~~n~~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 3 MGSKGPDILVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp SSCSSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 486766667666655555444434443333
No 27
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=69.58 E-value=2.8 Score=30.94 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=17.9
Q ss_pred HHHHhhcCCCCcHHHHHHHHhhc
Q psy4731 116 ALSALSNLKGVGTTLASALLAAA 138 (436)
Q Consensus 116 AL~~LTkLKGVGPATASAILAa~ 138 (436)
....|+.++|||+.+|..|.+..
T Consensus 44 ~~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 44 SVAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CHHHHhcCCCCCHHHHHHHHHHH
Confidence 35567888888888888888776
No 28
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=67.03 E-value=3.3 Score=40.36 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=39.0
Q ss_pred CCcCHHHHHHHHHHhhh-hHHHHhhcCHHHHHHHHH--HHHhhCcCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731 70 AHLNHEELVQLMKWKQT-LNYLVKVNTPRAVMMETK--KAFKKLPNLELALSALSNLKGVGTTLASALLAAAT 139 (436)
Q Consensus 70 ~~LTKDELVkLMEWKLt-L~kLVkSN~e~~Ve~~Tk--kAF~~LpDV~aAL~~LTkLKGVGPATASAILAa~~ 139 (436)
.+++..++..+++ +++ ++.+-..| =.|+.--+ .+.+.++..-..+..|+.|+|||+.||..|--...
T Consensus 9 ~~~~N~~i~~~L~-~ia~~~e~~g~~--~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~ 78 (335)
T 2bcq_A 9 ATNHNLHITEKLE-VLAKAYSVQGDK--WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILE 78 (335)
T ss_dssp ---CCHHHHHHHH-HHHHHHHHTTCH--HHHHHHHHHHHHHHSCCSCCCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHH-HHHHHHHHcCcc--HhHHHHHHHHHHHHhCCccccCHHHHhcCCCccHHHHHHHHHHHH
Confidence 4566677777665 444 55542222 33433332 23345554334455699999999999999977754
No 29
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=65.24 E-value=4.9 Score=39.12 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHhhh-hHHHHhhcCHHHHHHHHHH--HHhhCcCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731 73 NHEELVQLMKWKQT-LNYLVKVNTPRAVMMETKK--AFKKLPNLELALSALSNLKGVGTTLASALLAAAT 139 (436)
Q Consensus 73 TKDELVkLMEWKLt-L~kLVkSN~e~~Ve~~Tkk--AF~~LpDV~aAL~~LTkLKGVGPATASAILAa~~ 139 (436)
-..++..+++ +++ |+.+...| +=.|+.--++ +.+.|+..-..+..|..|+|||+.||..|--...
T Consensus 11 ~N~~i~~~L~-~ia~l~e~~~~~-~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 11 LNGGITDMLT-ELANFEKNVSQA-IHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp TTHHHHHHHH-HHHHHHHHTTCC-HHHHHHHHHHHHHHHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHH-HHHHHHHhcCCC-cHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3456666655 444 55554444 3445433333 3445554334455689999999999999988764
No 30
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=65.06 E-value=3.4 Score=38.41 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=20.4
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHhhcCCC
Q psy4731 114 ELALSALSNLKGVGTTLASALLAAATPE 141 (436)
Q Consensus 114 ~aAL~~LTkLKGVGPATASAILAa~~Pe 141 (436)
+.-+..|..++||||.||-+||+...|+
T Consensus 84 r~lf~~L~sv~GIGpk~A~~Ils~~~~~ 111 (212)
T 2ztd_A 84 RDLFLTLLSVSGVGPRLAMAALAVHDAP 111 (212)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHSCHH
T ss_pred HHHHHHhcCcCCcCHHHHHHHHHhCCHH
Confidence 3445567778888888888888877653
No 31
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=60.03 E-value=5 Score=36.57 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=22.5
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHhhcCC
Q psy4731 114 ELALSALSNLKGVGTTLASALLAAATP 140 (436)
Q Consensus 114 ~aAL~~LTkLKGVGPATASAILAa~~P 140 (436)
+..+..|...+||||.||-+||+.+.+
T Consensus 68 k~~f~~L~~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 68 LALFELLLSVSGVGPKVALALLSALPP 94 (191)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHhCCh
Confidence 445567889999999999999998754
No 32
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=59.84 E-value=4.7 Score=30.78 Aligned_cols=20 Identities=15% Similarity=0.395 Sum_probs=9.7
Q ss_pred HHhhcCCCCcHHHHHHHHhh
Q psy4731 118 SALSNLKGVGTTLASALLAA 137 (436)
Q Consensus 118 ~~LTkLKGVGPATASAILAa 137 (436)
+.|++++|||+.+|..|+++
T Consensus 56 eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 56 EEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp HHHTTSSSTTSHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHH
Confidence 34445555555555544443
No 33
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=58.68 E-value=7.2 Score=28.68 Aligned_cols=25 Identities=32% Similarity=0.235 Sum_probs=20.7
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHhhc
Q psy4731 114 ELALSALSNLKGVGTTLASALLAAA 138 (436)
Q Consensus 114 ~aAL~~LTkLKGVGPATASAILAa~ 138 (436)
......|+.++||||.+|-.||..+
T Consensus 10 ~~~~~~L~~i~giG~~~a~~Ll~~f 34 (75)
T 1x2i_A 10 ERQRLIVEGLPHVSATLARRLLKHF 34 (75)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHc
Confidence 3455678999999999999999864
No 34
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=58.00 E-value=9.2 Score=29.25 Aligned_cols=20 Identities=0% Similarity=0.175 Sum_probs=12.1
Q ss_pred cchhhhHHHHHHHHHHHHHH
Q psy4731 9 HKHHLWFIIIIIIIIIIIII 28 (436)
Q Consensus 9 ~~~~~~~~i~i~ii~~~ii~ 28 (436)
..++-||+|++-+++-+++.
T Consensus 7 ~~~vp~wiIi~svl~GLllL 26 (54)
T 2knc_A 7 ERAIPIWWVLVGVLGGLLLL 26 (54)
T ss_dssp TTTCCHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHH
Confidence 34567777766666554443
No 35
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=56.04 E-value=9 Score=29.84 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.4
Q ss_pred HHHHHhhcCCCCcHHHHHHHHhhc
Q psy4731 115 LALSALSNLKGVGTTLASALLAAA 138 (436)
Q Consensus 115 aAL~~LTkLKGVGPATASAILAa~ 138 (436)
..+..|..++||||.+|-.||..+
T Consensus 16 ~~~~~L~~IpgIG~~~A~~Ll~~f 39 (89)
T 1z00_A 16 RVTECLTTVKSVNKTDSQTLLTTF 39 (89)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHC
Confidence 456678899999999999999865
No 36
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=54.50 E-value=21 Score=27.41 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCcccccch
Q psy4731 12 HLWFIIIIIIIIIIIIIIIIIIII-IIIIINRIPIHSNISNI 52 (436)
Q Consensus 12 ~~~~~i~i~ii~~~ii~~i~~~~~-~iiiin~ip~~~L~eLD 52 (436)
+-||+|++-+++-+++..+++.++ =.-.|.|--++...+|.
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~~~~~~~ 48 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKKMEKLE 48 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCC--
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcchhhHHh
Confidence 456666655555444433333222 23345555444444443
No 37
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=54.04 E-value=6.4 Score=36.10 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=21.3
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHhhcCC
Q psy4731 114 ELALSALSNLKGVGTTLASALLAAATP 140 (436)
Q Consensus 114 ~aAL~~LTkLKGVGPATASAILAa~~P 140 (436)
+..+..|...+||||.+|-+||+.+.+
T Consensus 69 k~~f~~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 69 RTLFKELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHhhCCh
Confidence 345567888999999999999988654
No 38
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=51.70 E-value=14 Score=26.92 Aligned_cols=21 Identities=0% Similarity=0.124 Sum_probs=12.4
Q ss_pred ccchhhhHHHHHHHHHHHHHH
Q psy4731 8 YHKHHLWFIIIIIIIIIIIII 28 (436)
Q Consensus 8 ~~~~~~~~~i~i~ii~~~ii~ 28 (436)
+..++-||+|++-+++-+++.
T Consensus 4 ~~~~vp~wiIi~s~l~GLllL 24 (42)
T 2k1a_A 4 EERAIPIWWVLVGVLGGLLLL 24 (42)
T ss_dssp SCCCCCHHHHHHHHHHHHHHH
T ss_pred CcCCcchHHHHHHHHHHHHHH
Confidence 344567777766666554443
No 39
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=49.37 E-value=12 Score=32.08 Aligned_cols=43 Identities=30% Similarity=0.409 Sum_probs=31.5
Q ss_pred cCHHHHHHHhhcCCCCcHHHHHHHHhhcC--CC-CCccccHHHHHh
Q psy4731 111 PNLELALSALSNLKGVGTTLASALLAAAT--PE-VAPFMADECLMA 153 (436)
Q Consensus 111 pDV~aAL~~LTkLKGVGPATASAILAa~~--Pe-~vPFFSDEAf~~ 153 (436)
|+-+...-+|+.++|||+.||..||..+. |. .+=-.+||-+..
T Consensus 9 ~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~ 54 (114)
T 3r8n_M 9 PDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDT 54 (114)
T ss_dssp CCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHH
T ss_pred CCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHH
Confidence 33344556789999999999999999874 54 566677775543
No 40
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=49.31 E-value=10 Score=29.56 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=20.9
Q ss_pred HHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731 116 ALSALSNLKGVGTTLASALLAAAT 139 (436)
Q Consensus 116 AL~~LTkLKGVGPATASAILAa~~ 139 (436)
..+.|++++|||+.+|..|++...
T Consensus 49 ~~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 49 SREDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHH
Confidence 456799999999999999998873
No 41
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=48.97 E-value=5.8 Score=29.92 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHHhhcCCCCcHHHHHHHHhhc
Q psy4731 117 LSALSNLKGVGTTLASALLAAA 138 (436)
Q Consensus 117 L~~LTkLKGVGPATASAILAa~ 138 (436)
...|..++||||.++-.+|.-+
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~F 24 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHV 24 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHHHc
Confidence 4578899999999999999754
No 42
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=47.51 E-value=17 Score=29.50 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=4.4
Q ss_pred cccchhhhHHH
Q psy4731 7 HYHKHHLWFII 17 (436)
Q Consensus 7 ~~~~~~~~~~i 17 (436)
.|=+..=+++|
T Consensus 63 mwwkn~K~~ii 73 (91)
T 3hd7_A 63 YWWKNLKMMII 73 (91)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34344434433
No 43
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=46.49 E-value=10 Score=29.77 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=20.5
Q ss_pred HHHHhhcCCCCcHHHHHHHHhhc
Q psy4731 116 ALSALSNLKGVGTTLASALLAAA 138 (436)
Q Consensus 116 AL~~LTkLKGVGPATASAILAa~ 138 (436)
..+.|++++|||+.+|..|+++.
T Consensus 62 s~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 62 SREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp CHHHHHTSSSCCSHHHHHHHHHH
T ss_pred CHHHHHhCCCCCHHHHHHHHHHH
Confidence 45789999999999999999886
No 44
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=45.71 E-value=23 Score=25.62 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=13.0
Q ss_pred cccchhhhHHHHHHHHHHHHH
Q psy4731 7 HYHKHHLWFIIIIIIIIIIII 27 (436)
Q Consensus 7 ~~~~~~~~~~i~i~ii~~~ii 27 (436)
.|....+.+.|+.-+|..|++
T Consensus 2 ~Cp~~~n~~~Iv~gvi~~ivl 22 (43)
T 2k9j_B 2 ESPKGPDILVVLLSVMGAILL 22 (43)
T ss_dssp CCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEeehHHHHHHHHHH
Confidence 586666777766655555444
No 45
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=45.68 E-value=7.5 Score=29.65 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.3
Q ss_pred HHhhcCCCCcHHHHHHHHhhc
Q psy4731 118 SALSNLKGVGTTLASALLAAA 138 (436)
Q Consensus 118 ~~LTkLKGVGPATASAILAa~ 138 (436)
..|..++||||.+|-.||..+
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~f 44 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYM 44 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc
Confidence 357799999999999999875
No 46
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=44.11 E-value=11 Score=35.48 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=18.8
Q ss_pred HHHHHHHhhcCCCCcHHHHHHH
Q psy4731 113 LELALSALSNLKGVGTTLASAL 134 (436)
Q Consensus 113 V~aAL~~LTkLKGVGPATASAI 134 (436)
+...++.|.+|+||||-||-=+
T Consensus 21 l~~LI~~l~~LPGIG~KsA~Rl 42 (212)
T 3vdp_A 21 VAKLIEELSKLPGIGPKTAQRL 42 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHH
Confidence 6788999999999999998643
No 47
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=40.20 E-value=13 Score=33.15 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHhhcC--CC-CCccccHHHHHh
Q psy4731 114 ELALSALSNLKGVGTTLASALLAAAT--PE-VAPFMADECLMA 153 (436)
Q Consensus 114 ~aAL~~LTkLKGVGPATASAILAa~~--Pe-~vPFFSDEAf~~ 153 (436)
+...-+||.++|||+.||-.|+..+. |. .+=-.+||-...
T Consensus 26 k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~ 68 (146)
T 3u5c_S 26 IKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELER 68 (146)
T ss_dssp SCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHH
T ss_pred cchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHH
Confidence 44556789999999999999999874 44 566677775543
No 48
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=39.79 E-value=24 Score=34.73 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhh-hHHHHhhcCHHHHHHHHHH--HHhhCcCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731 74 HEELVQLMKWKQT-LNYLVKVNTPRAVMMETKK--AFKKLPNLELALSALSNLKGVGTTLASALLAAAT 139 (436)
Q Consensus 74 KDELVkLMEWKLt-L~kLVkSN~e~~Ve~~Tkk--AF~~LpDV~aAL~~LTkLKGVGPATASAILAa~~ 139 (436)
..++..+.+ +++ ++.+-. | +-.|+.--++ +.+.|+..-..+..|..|+|||+.||..|--...
T Consensus 17 N~~i~~~L~-~ia~~~e~~g-~-~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 17 NTLLSEALE-TLAEAAGFEA-N-EGRLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp CHHHHHHHH-HHHHHHHHTT-C-HHHHHHHHHHHHHHHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHcC-C-cHHHHHHHHHHHHHHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHH
Confidence 455655554 444 555433 4 4455543333 3345554334445699999999999999987764
No 49
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=38.67 E-value=11 Score=33.67 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=31.2
Q ss_pred cCHHHHHHHhhcCCCCcHHHHHHHHhhcC--CC-CCccccHHHHH
Q psy4731 111 PNLELALSALSNLKGVGTTLASALLAAAT--PE-VAPFMADECLM 152 (436)
Q Consensus 111 pDV~aAL~~LTkLKGVGPATASAILAa~~--Pe-~vPFFSDEAf~ 152 (436)
|+-+...-+||.++|||+.||-.|+..+. |. .+=..+||-..
T Consensus 21 ~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~ 65 (152)
T 3iz6_M 21 DGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMD 65 (152)
T ss_dssp CCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHH
T ss_pred CCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHH
Confidence 33445667889999999999999999874 43 55567776444
No 50
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=38.03 E-value=17 Score=37.48 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.7
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHhh
Q psy4731 114 ELALSALSNLKGVGTTLASALLAA 137 (436)
Q Consensus 114 ~aAL~~LTkLKGVGPATASAILAa 137 (436)
...+..|.++.||||.||-+|++.
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc
Confidence 458889999999999999999986
No 51
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.02 E-value=24 Score=31.50 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHhhcC--CC-CCccccHHHHH
Q psy4731 114 ELALSALSNLKGVGTTLASALLAAAT--PE-VAPFMADECLM 152 (436)
Q Consensus 114 ~aAL~~LTkLKGVGPATASAILAa~~--Pe-~vPFFSDEAf~ 152 (436)
+...-+||.++|||+.||-.|+..+. |. .+=..+||-..
T Consensus 19 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~ 60 (148)
T 3j20_O 19 KQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVK 60 (148)
T ss_dssp SCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHH
T ss_pred CEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHH
Confidence 44556789999999999999998874 43 56667776443
No 52
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=37.97 E-value=29 Score=34.49 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHhhh-hHHHHhhcCHHHHHHHHHH--HHhhCcCHHHHHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731 73 NHEELVQLMKWKQT-LNYLVKVNTPRAVMMETKK--AFKKLPNLELALSALSNLKGVGTTLASALLAAAT 139 (436)
Q Consensus 73 TKDELVkLMEWKLt-L~kLVkSN~e~~Ve~~Tkk--AF~~LpDV~aAL~~LTkLKGVGPATASAILAa~~ 139 (436)
...++..+.+ +++ ++.+-. | +=.|+.--++ +.+.|+..-..+..|.+|+|||+.||..|--...
T Consensus 35 ~N~~i~~~L~-~ia~~~e~~g-~-~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 35 YNQLFTDALD-ILAENDELRE-N-EGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp TTHHHHHHHH-HHHHHHHHTT-C-HHHHHHHHHHHHHHHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHH-HHHHHHHhhC-C-cHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3455665554 444 555533 3 4455543333 3445554334455699999999999999987764
No 53
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=37.73 E-value=19 Score=32.41 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=30.0
Q ss_pred CHHHHHHHhhcCCCCcHHHHHHHHhhcC--CC-CCccccHHHHH
Q psy4731 112 NLELALSALSNLKGVGTTLASALLAAAT--PE-VAPFMADECLM 152 (436)
Q Consensus 112 DV~aAL~~LTkLKGVGPATASAILAa~~--Pe-~vPFFSDEAf~ 152 (436)
+-+...-+|+.++|||+.||-.|+..+. |. .+=..+||-+.
T Consensus 24 ~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~ 67 (155)
T 2xzm_M 24 GKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCN 67 (155)
T ss_dssp CSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHH
T ss_pred CCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHH
Confidence 3344566889999999999999999874 43 45556666443
No 54
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=36.33 E-value=19 Score=35.08 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.2
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHhh
Q psy4731 114 ELALSALSNLKGVGTTLASALLAA 137 (436)
Q Consensus 114 ~aAL~~LTkLKGVGPATASAILAa 137 (436)
..+|..|+++.||||.||..+-.-
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHc
Confidence 578999999999999999988654
No 55
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=35.90 E-value=3.4 Score=32.14 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhCcCHH-HHHHHhhcCCCCcHHHHHHHHhhcCCCCCccccHH
Q psy4731 98 AVMMETKKAFKKLPNLE-LALSALSNLKGVGTTLASALLAAATPEVAPFMADE 149 (436)
Q Consensus 98 ~Ve~~TkkAF~~LpDV~-aAL~~LTkLKGVGPATASAILAa~~Pe~vPFFSDE 149 (436)
.+.+....+|..+.++. .+.+.|+.++|++.++|..|...+.- .|+|.+|
T Consensus 19 ~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~--~~w~~~~ 69 (70)
T 1wcn_A 19 LAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN--ICWFGDE 69 (70)
T ss_dssp HHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH--HHTTCTT
T ss_pred HHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH--ccCcccc
Confidence 33444444444444432 46778888888888888888777642 5677554
No 56
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=35.52 E-value=19 Score=34.43 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=18.3
Q ss_pred HHHHHHHhhcCCCCcHHHHHHH
Q psy4731 113 LELALSALSNLKGVGTTLASAL 134 (436)
Q Consensus 113 V~aAL~~LTkLKGVGPATASAI 134 (436)
+..-++.|.+|+||||-||-=+
T Consensus 7 l~~LI~~l~~LPGIG~KSA~Rl 28 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRL 28 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHhHCCCCCHHHHHHH
Confidence 4678899999999999998643
No 57
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=35.21 E-value=22 Score=28.36 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=0.0
Q ss_pred CHHHHHHHHH
Q psy4731 73 NHEELVQLMK 82 (436)
Q Consensus 73 TKDELVkLME 82 (436)
.+||+-+|.+
T Consensus 110 ~~dEi~~L~~ 119 (163)
T 2f95_B 110 REDEIGDLYA 119 (163)
T ss_dssp ----------
T ss_pred CCChHHHHHH
Confidence 3577776654
No 58
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=35.02 E-value=25 Score=28.22 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.8
Q ss_pred HHHHHhhcCCCCcHHHHHHHHhhc
Q psy4731 115 LALSALSNLKGVGTTLASALLAAA 138 (436)
Q Consensus 115 aAL~~LTkLKGVGPATASAILAa~ 138 (436)
.+...|..++||||.+.-.||.-+
T Consensus 15 ~~~s~L~~IpGIG~kr~~~LL~~F 38 (84)
T 1z00_B 15 GPQDFLLKMPGVNAKNCRSLMHHV 38 (84)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHS
T ss_pred cHHHHHHhCCCCCHHHHHHHHHHc
Confidence 467789999999999999999754
No 59
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=33.24 E-value=24 Score=34.64 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.9
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHhh
Q psy4731 113 LELALSALSNLKGVGTTLASALLAA 137 (436)
Q Consensus 113 V~aAL~~LTkLKGVGPATASAILAa 137 (436)
...+|..|+++.||||.||..+-.-
T Consensus 97 ~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 97 RYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred chHHHHHHhCCCCCCHHHHHHHHHc
Confidence 5578999999999999999998654
No 60
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=32.97 E-value=20 Score=31.17 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=29.3
Q ss_pred cCHHHHHHHhhcCCCCcHHHHHHHHhhcC--CC-CCccccHHHHH
Q psy4731 111 PNLELALSALSNLKGVGTTLASALLAAAT--PE-VAPFMADECLM 152 (436)
Q Consensus 111 pDV~aAL~~LTkLKGVGPATASAILAa~~--Pe-~vPFFSDEAf~ 152 (436)
|+-+...-+|+.++|||+.+|-.||..+. |. .+=-.+||-+.
T Consensus 10 ~~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~ 54 (126)
T 2vqe_M 10 PRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVV 54 (126)
T ss_dssp CCSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHH
T ss_pred CCCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHH
Confidence 33344556789999999999999998864 43 44445665444
No 61
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=32.32 E-value=24 Score=36.29 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.6
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHhh
Q psy4731 114 ELALSALSNLKGVGTTLASALLAA 137 (436)
Q Consensus 114 ~aAL~~LTkLKGVGPATASAILAa 137 (436)
...+..|+++.||||.||-++|+.
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHh
Confidence 357889999999999999999986
No 62
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=30.30 E-value=29 Score=28.42 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=35.5
Q ss_pred HHHhhcCCCCcHHHHHHHHhhcCCCCCccc---cHHHHHhcCCCCCCccCHHHHHHHHHHHH
Q psy4731 117 LSALSNLKGVGTTLASALLAAATPEVAPFM---ADECLMAIPEIEGIDYTTKEYLKFVNFIN 175 (436)
Q Consensus 117 L~~LTkLKGVGPATASAILAa~~Pe~vPFF---SDEAf~~lpg~~kIKYTlKEYlell~~vr 175 (436)
|..|+.|++|||+++-.+-.++.-..-=|. ++|+|..+... ...=++.-|..|..+++
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~-~~~~c~~~L~aL~gAi~ 63 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWEN-DSSVCMSELYALEGAVQ 63 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHH
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHH-CCCCCHHHHHHHHHHHc
Confidence 456889999999999999888753211121 35666665432 34445555555555543
No 63
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=29.45 E-value=60 Score=31.96 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=42.2
Q ss_pred cCCCCcHHHHHHHHhhcC----------CCCCccccHHHHHhc--CC---CCCCccCHHHHHHHHHHHHHHHHHHhhhcc
Q psy4731 122 NLKGVGTTLASALLAAAT----------PEVAPFMADECLMAI--PE---IEGIDYTTKEYLKFVNFINNTVERLNKESK 186 (436)
Q Consensus 122 kLKGVGPATASAILAa~~----------Pe~vPFFSDEAf~~l--pg---~~kIKYTlKEYlell~~vr~LakRLn~e~~ 186 (436)
.++||||-||--+|.-+- ...+||=.+|+...+ |. ...+++.......+.+.+.+ +
T Consensus 255 GVpGIG~KtA~kLl~~~gsle~il~~~~~~~~~~~~~~~~~~f~~p~v~~~~~~~w~~pd~~~l~~fl~~---~------ 325 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYGGIEKIPKPILKSPIEVDVIAIKKYFLQPQVTDNYRIEWHTPDPDAVKRILVD---E------ 325 (363)
T ss_dssp CSTTCCHHHHHHHHHHHTSSTTSCGGGCCCSSCCCHHHHHHHHHSCCCCSCCCCCCCCCCHHHHHHHHTT---T------
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHhcccccCCCCHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHh---c------
Confidence 467999999999998753 124566556776654 32 12355555555444444221 2
Q ss_pred CCCCCcChhHHHHHH
Q psy4731 187 NGTGTWNAHQVELAL 201 (436)
Q Consensus 187 ~g~~~wT~~dVEKAL 201 (436)
..|+..+|.+++
T Consensus 326 ---~~f~~~rv~~~~ 337 (363)
T 3ory_A 326 ---HDFSIDRVSTAL 337 (363)
T ss_dssp ---TCCCHHHHHHHH
T ss_pred ---cCCCHHHHHHHH
Confidence 468888888875
No 64
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=29.43 E-value=2.4e+02 Score=23.25 Aligned_cols=148 Identities=12% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCcccccchhhHHhhcchhHhhcCCCCCcCHHHHHHHHHH--------hhh------hHHHHhhcCHHHHH-HHHHHHHh
Q psy4731 44 PIHSNISNIGWYQNELPKKIKARGKDAHLNHEELVQLMKW--------KQT------LNYLVKVNTPRAVM-METKKAFK 108 (436)
Q Consensus 44 p~~~L~eLD~WryeELP~~Ik~R~k~~~LTKDELVkLMEW--------KLt------L~kLVkSN~e~~Ve-~~TkkAF~ 108 (436)
+.....+|-+ +. .-.+..+++|+.+||.+++.- +++ +...+..|....|. ..-...+.
T Consensus 28 ~~~~~~~l~~-F~------~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~eF~~~~~ 100 (198)
T 1juo_A 28 PGQTQDPLYG-YF------AAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWA 100 (198)
T ss_dssp TTCCCCTTHH-HH------HHHHTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHH
T ss_pred CccccHHHHH-HH------HHhCCCCCcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCCCCCCeECHHHHHHHHH
Q ss_pred hCcCHHHHHHHhh-cCCC-CcHHHHHHHHhhcCCCCCccccHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHHhhhcc
Q psy4731 109 KLPNLELALSALS-NLKG-VGTTLASALLAAATPEVAPFMADECLMAIPEIEGIDYTTKEYLKFVNFINNTVERLNKESK 186 (436)
Q Consensus 109 ~LpDV~aAL~~LT-kLKG-VGPATASAILAa~~Pe~vPFFSDEAf~~lpg~~kIKYTlKEYlell~~vr~LakRLn~e~~ 186 (436)
.+..+..+++.+- .=.| |-..-=-.+|.........---++.|..+ ...-+-+..||..++..++.+.+....-+.
T Consensus 101 ~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~--d~dg~i~~~eF~~~~~~~~~~~~~F~~~D~ 178 (198)
T 1juo_A 101 VLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY--STNGKITFDDYIACCVKLRALTDSFRRRDT 178 (198)
T ss_dssp HHHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHHT--CSSSSEEHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh--CCCCeEcHHHHHHHHHHHHHHHHHHHHhCC
Q ss_pred CCCCCcChhHHHHHH
Q psy4731 187 NGTGTWNAHQVELAL 201 (436)
Q Consensus 187 ~g~~~wT~~dVEKAL 201 (436)
+++|.++.. ++..+
T Consensus 179 d~~G~is~~-~~~~l 192 (198)
T 1juo_A 179 AQQGVVNFP-YDDFI 192 (198)
T ss_dssp TCCSEEEEE-HHHHH
T ss_pred CCCCeEeec-HHHHH
No 65
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=29.19 E-value=31 Score=34.26 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.8
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHhh
Q psy4731 113 LELALSALSNLKGVGTTLASALLAA 137 (436)
Q Consensus 113 V~aAL~~LTkLKGVGPATASAILAa 137 (436)
...+|..|+++.||||.||..+-.-
T Consensus 116 ~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 116 RYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred chhHHHHHHccCCCCHHHHHHHHHc
Confidence 4568999999999999999998654
No 66
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=28.58 E-value=16 Score=30.12 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=33.5
Q ss_pred HHHHhhcCCCCcHHHHHHHHhhcCCCCCccc---cHHHHHhcCCCCCCccCHHHHHHHHHHHH
Q psy4731 116 ALSALSNLKGVGTTLASALLAAATPEVAPFM---ADECLMAIPEIEGIDYTTKEYLKFVNFIN 175 (436)
Q Consensus 116 AL~~LTkLKGVGPATASAILAa~~Pe~vPFF---SDEAf~~lpg~~kIKYTlKEYlell~~vr 175 (436)
+|..|+.|++|||+++-.+-.++-....-|. ++|||..+.. ....=++.-|-.|..+++
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rLk~-~~~~~~~~~L~aL~gAi~ 63 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWE-NDSSVCMSELYALEGAVQ 63 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHH-HCTTCCHHHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHc
Confidence 3567899999999999999988853221111 2556655421 111223444444444444
No 67
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=27.49 E-value=30 Score=33.70 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=19.9
Q ss_pred HHHHHhhcCCCCcHHHHHHHHhh
Q psy4731 115 LALSALSNLKGVGTTLASALLAA 137 (436)
Q Consensus 115 aAL~~LTkLKGVGPATASAILAa 137 (436)
..++.|+++.||||.||..+-.-
T Consensus 93 p~l~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 93 PVLELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHT
T ss_pred HHHHHHhcCCCcCHHHHHHHHHc
Confidence 38888999999999999988654
No 68
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=25.89 E-value=14 Score=34.78 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCcHHHHHHHHhh
Q psy4731 116 ALSALSNLKGVGTTLASALLAA 137 (436)
Q Consensus 116 AL~~LTkLKGVGPATASAILAa 137 (436)
....|..++||||.+|-.||..
T Consensus 13 ~~~~L~~IpGIGpk~a~~Ll~~ 34 (241)
T 1vq8_Y 13 EYTELTDISGVGPSKAESLREA 34 (241)
T ss_dssp ----------------------
T ss_pred chhHHhcCCCCCHHHHHHHHHc
Confidence 4456788999999999999976
No 69
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=25.70 E-value=2.5e+02 Score=22.28 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=30.0
Q ss_pred CCccCHHHHHHHHHHHHHHHHHHhhhccCCCCCcChhHHHHH
Q psy4731 159 GIDYTTKEYLKFVNFINNTVERLNKESKNGTGTWNAHQVELA 200 (436)
Q Consensus 159 kIKYTlKEYlell~~vr~LakRLn~e~~~g~~~wT~~dVEKA 200 (436)
.-+-+..||..++..+..+.+....-+.+++|.++.. ++..
T Consensus 120 dg~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~-~~~~ 160 (167)
T 1gjy_A 120 SGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFS-YDDF 160 (167)
T ss_dssp TTBEEHHHHHHHHHHHHHHHHHHHHHCTTCCSEEEEE-HHHH
T ss_pred CCcCcHHHHHHHHHHHHHHHHHHHHhCCCCCeeEEee-HHHH
Confidence 3456778999988877777777766677777888877 6554
No 70
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=25.63 E-value=76 Score=25.59 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=20.2
Q ss_pred hhCcCHHHHHHHhhcCCCCcHHHHHHHH
Q psy4731 108 KKLPNLELALSALSNLKGVGTTLASALL 135 (436)
Q Consensus 108 ~~LpDV~aAL~~LTkLKGVGPATASAIL 135 (436)
+..|..-..-+.+..|+||||.+|.-|=
T Consensus 48 k~~P~~i~s~~e~~~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 48 QRYPLPLRSGKEAKILQHFGDRLCRMLD 75 (87)
T ss_dssp HHCCSCCCSHHHHHTCTTTCHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHhhcccHHHHHHHH
Confidence 4445544555666799999999998763
No 71
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=24.90 E-value=80 Score=30.52 Aligned_cols=11 Identities=27% Similarity=0.133 Sum_probs=8.5
Q ss_pred CCcChhHHHHH
Q psy4731 190 GTWNAHQVELA 200 (436)
Q Consensus 190 ~~wT~~dVEKA 200 (436)
+.+|..+.+.|
T Consensus 247 g~It~~e~~~A 257 (263)
T 3vmt_A 247 NYINETQYQQA 257 (263)
T ss_dssp TSSCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 57888888776
No 72
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=24.05 E-value=49 Score=29.44 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.0
Q ss_pred HHHHhhcCCCCcHHHHHHHHhhcC
Q psy4731 116 ALSALSNLKGVGTTLASALLAAAT 139 (436)
Q Consensus 116 AL~~LTkLKGVGPATASAILAa~~ 139 (436)
....|..++||||.+|-.|+..+.
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~fg 183 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILERFG 183 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcC
Confidence 344678999999999999998763
No 73
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=23.92 E-value=68 Score=28.30 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=36.2
Q ss_pred CCcCHHHHHHHHHHhhh--hHHHHhhcCHHHHHHH---HHHHH-hhCcCHHHHHHHhh-cCCCCcHH
Q psy4731 70 AHLNHEELVQLMKWKQT--LNYLVKVNTPRAVMME---TKKAF-KKLPNLELALSALS-NLKGVGTT 129 (436)
Q Consensus 70 ~~LTKDELVkLMEWKLt--L~kLVkSN~e~~Ve~~---TkkAF-~~LpDV~aAL~~LT-kLKGVGPA 129 (436)
+|+|.+||..|..+==+ =.++++.+| ...++. +..-- +.+|.+.+.+..+. +|.++|||
T Consensus 78 ~~fT~~El~~l~~FY~sp~Gkk~~~~~p-~~~~~~~~~~q~~~~~~~p~~~~~~~em~kel~~~~~~ 143 (147)
T 3oao_A 78 TNFTESELKDLNAFYQSPLGKKVLEKMP-RLTAESAQLTQAKLQGAVEPVNKLMADMDKELGVAAPA 143 (147)
T ss_dssp HHSCHHHHHHHHHHHHSHHHHHHHHHHH-HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHTTCC---
T ss_pred HHCCHHHHHHHHHHHCCHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 59999999999988766 666666664 323221 11111 23355667777775 79999886
No 74
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=21.86 E-value=44 Score=35.36 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=9.4
Q ss_pred CcCHHHHHHHHHHhhh
Q psy4731 71 HLNHEELVQLMKWKQT 86 (436)
Q Consensus 71 ~LTKDELVkLMEWKLt 86 (436)
+|++++|.+|=.|+-+
T Consensus 476 ~L~~~~L~~l~g~geK 491 (586)
T 4glx_A 476 KLTAGKLTGLERMGPK 491 (586)
T ss_dssp TCCHHHHHTSTTCCHH
T ss_pred CCCHHHHhcccCccHH
Confidence 4677776666445443
No 75
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=21.58 E-value=3e+02 Score=21.69 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=30.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhhhccCCCCCcChhHHHHHHH
Q psy4731 161 DYTTKEYLKFVNFINNTVERLNKESKNGTGTWNAHQVELALW 202 (436)
Q Consensus 161 KYTlKEYlell~~vr~LakRLn~e~~~g~~~wT~~dVEKALW 202 (436)
.-+..||..++..+..+..-...-+.++.|.++..++.+++-
T Consensus 56 ~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~ 97 (165)
T 1k94_A 56 KMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIG 97 (165)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHCTTCCSBCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCCCCceECHHHHHHHHH
Confidence 456678887777666666666666666777888888887753
No 76
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=21.12 E-value=2.6e+02 Score=22.23 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=31.1
Q ss_pred CccCHHHHHHHHHHHHHHHHHHhhhccCCCCCcChhHHHHHH
Q psy4731 160 IDYTTKEYLKFVNFINNTVERLNKESKNGTGTWNAHQVELAL 201 (436)
Q Consensus 160 IKYTlKEYlell~~vr~LakRLn~e~~~g~~~wT~~dVEKAL 201 (436)
-.-+..||..++..+..+..-...-+.+++|.++..++.+++
T Consensus 57 g~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l 98 (167)
T 1gjy_A 57 GTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKAL 98 (167)
T ss_dssp SCBCHHHHHHHHHHHHHHHHHHHHHCTTCCSEECHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHH
Confidence 345678888887777666666666676777889999888875
Done!