RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4731
(436 letters)
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 46.8 bits (111), Expect = 2e-05
Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 25/180 (13%)
Query: 248 SDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTN 307
S++S+ E AT+ + A SS P +S S S GS D +
Sbjct: 365 SEDSDEEQATEKPPSRNTPPSAPSSNPEPAASSSGSSSSSSGSESSSGS------DSESE 418
Query: 308 DSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDG-----------ADDNASAEPPLK 356
S SD+ N+ P ++P PP+ ++ ++D ++ S+ PP+K
Sbjct: 419 SS------SSDSEENEPPRTASPEPEPPSTNKWQLDNWLNKVNPHKVSPAESVSSNPPIK 472
Query: 357 KTKLSEPENEVANNGESSEAAKPEKNGASEPESVSE--SEAPVTKEGEQKVPVEPTAPVP 414
+ E + + + + E+ +P +S+ + + P + G+QK P + AP
Sbjct: 473 QPMEKEGKVKSSGSQYHPESKEPPPKSSSKEKRRPRTAQKGPESGRGKQKSPAQSEAPPQ 532
>gnl|CDD|221085 pfam11337, DUF3139, Protein of unknown function (DUF3139). This
family of proteins with unknown function appears to be
restricted to Firmicutes.
Length = 85
Score = 40.1 bits (94), Expect = 1e-04
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
+I I+II+I+I + + I++ N+ H + I WY
Sbjct: 5 KVIFIVIILIVISLFVGIVLFFAGNQYQRHKALKAIDWY 43
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 42.7 bits (100), Expect = 3e-04
Identities = 27/153 (17%), Positives = 44/153 (28%), Gaps = 10/153 (6%)
Query: 274 PSEPEDTSSLQSLPSEKSLDDGSIGN---NHTDDVTNDSVMTLGAESDTNTNDLPDPSTP 330
E E + + + G +G N DDV + +D +
Sbjct: 295 ALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVAD 354
Query: 331 TNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGE---SSEAAKPEKNGASEP 387
+ P+ E AD L + + + A E + +EP
Sbjct: 355 RDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEP 414
Query: 388 ESVSESEAPVTKEGEQKVPVEPTAPVPVESKTE 420
E V E AP+ + P E P + E
Sbjct: 415 E-VPEKAAPIPDPAK---PDELAVAGPGDDPAE 443
Score = 36.9 bits (85), Expect = 0.017
Identities = 31/169 (18%), Positives = 51/169 (30%), Gaps = 31/169 (18%)
Query: 243 ALDTCSDESNLEPATQN--NKPDESTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSIGNN 300
A S S + P N+PD+ + E + + + S + D
Sbjct: 305 AAAVASAASAVGPVGPGEPNQPDDVAEAVKA----EVAEVTDEVAAESVVQVAD------ 354
Query: 301 HTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDGADDNASAEPPLKKTKL 360
+ A +T+ D+ AP+ ++D ASA P
Sbjct: 355 -------RDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEA--ASAAP------- 398
Query: 361 SEPENEVANNGESSEAAKPEKNGASEPESVSESEAPVTKEGEQKVPVEP 409
EP + + +E PEK + P + G P EP
Sbjct: 399 EEPAALASEAHDETEPEVPEK---AAPIPDPAKPDELAVAGPGDDPAEP 444
Score = 29.2 bits (65), Expect = 4.3
Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 25/149 (16%)
Query: 206 VAAELKPELLEDIRSLSSNN---TNNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKP 262
VA +K E+ E +++ + + +G ST V T++A D ++ + A Q
Sbjct: 329 VAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEA-DIEREQPG-DLAGQAPAA 386
Query: 263 DESTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTN 322
+ AAS+ P EP +S +E + + + D
Sbjct: 387 HQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAP-----------------IPDP--- 426
Query: 323 DLPDPSTPTNNPPAPSQVEMDGADDNASA 351
PD P++ + D+ S+
Sbjct: 427 AKPDELAVAGPGDDPAEPDGIRRQDDFSS 455
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 39.6 bits (92), Expect = 0.003
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 314 GAESDTNTNDLPDPSTPTNNPPAPSQVEMDGADDNA--SAEPPLKKTKLSEPENEVANNG 371
S + +P+ P ++ P+P+Q + S E P T EP++
Sbjct: 136 PPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQS 195
Query: 372 ESSEAAKPEKNGASEP-----ESVSESEAPVTKEG--EQKVPVEPTAPVPVESKTET 421
E+ ++ P ++ EP + ++ +P T++ + P EP P +
Sbjct: 196 ETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGHRS 252
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 37.8 bits (88), Expect = 0.003
Identities = 7/47 (14%), Positives = 23/47 (48%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
HK+ L F++ + + +I+++++ ++ +I + +S
Sbjct: 84 HKYFLLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSI 130
Score = 31.3 bits (71), Expect = 0.51
Identities = 5/35 (14%), Positives = 17/35 (48%)
Query: 6 KHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
L+F +I+ + II++++ + ++ +
Sbjct: 111 YLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSF 145
Score = 31.3 bits (71), Expect = 0.63
Identities = 2/43 (4%), Positives = 19/43 (44%)
Query: 1 MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
++ ++ + + II++++ + ++ + ++ +
Sbjct: 109 LVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFFHL 151
Score = 29.0 bits (65), Expect = 2.9
Identities = 6/48 (12%), Positives = 22/48 (45%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNE 58
L + II++++ + ++ + ++ + I NI+ + + +
Sbjct: 120 FFLILSLFSSIILLVLSLFFLLFLSFLLFFHLYLILKNITTYEYIKKK 167
>gnl|CDD|148326 pfam06656, Tenui_PVC2, Tenuivirus PVC2 protein. This family
consists of several Tenuivirus PVC2 proteins from Rice
grassy stunt virus, Maize stripe virus and Rice hoja
blanca virus. The function of this family is unknown.
Length = 785
Score = 39.4 bits (92), Expect = 0.003
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 1 MIQNKKHYH--KHHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
I K+Y K + + + II+++III+ I II I+I
Sbjct: 209 FIMRIKNYECSKTYRYSLYSIILLLIIIVCFTGITIINILIF 250
>gnl|CDD|223833 COG0762, COG0762, Predicted integral membrane protein [Function
unknown].
Length = 96
Score = 36.4 bits (85), Expect = 0.003
Identities = 7/38 (18%), Positives = 24/38 (63%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
+++ +++++I+I + I +++I +++ P + IG
Sbjct: 7 LLLSLLVLLILIGVYIFLLLIRALLSWFPPAGETNPIG 44
Score = 33.8 bits (78), Expect = 0.031
Identities = 6/26 (23%), Positives = 22/26 (84%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
F+++I+++ +++++I+I + I +++I
Sbjct: 2 FLMLILLLSLLVLLILIGVYIFLLLI 27
Score = 33.4 bits (77), Expect = 0.036
Identities = 5/27 (18%), Positives = 20/27 (74%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIIN 41
++I+++ +++++I+I + I +++I
Sbjct: 3 LMLILLLSLLVLLILIGVYIFLLLIRA 29
Score = 31.1 bits (71), Expect = 0.29
Identities = 5/28 (17%), Positives = 21/28 (75%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRI 43
+++I+++ +++++I+I + I +++ R
Sbjct: 2 FLMLILLLSLLVLLILIGVYIFLLLIRA 29
Score = 30.3 bits (69), Expect = 0.50
Identities = 5/38 (13%), Positives = 19/38 (50%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
+++++I+I + I +++I ++ + I +
Sbjct: 9 LSLLVLLILIGVYIFLLLIRALLSWFPPAGETNPIGRL 46
Score = 29.9 bits (68), Expect = 0.61
Identities = 5/24 (20%), Positives = 17/24 (70%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIII 36
L +++++I+I + I +++I ++
Sbjct: 8 LLSLLVLLILIGVYIFLLLIRALL 31
>gnl|CDD|201526 pfam00957, Synaptobrevin, Synaptobrevin.
Length = 89
Score = 36.4 bits (85), Expect = 0.003
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
K +W+ + + II+ ++++I+I+IIII+I
Sbjct: 58 KRKMWWKNMKLKIILGLVVLILILIIIIVICG 89
Score = 33.3 bits (77), Expect = 0.036
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 2 IQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIII 34
++ K + L I+ ++++I+I+IIII+I
Sbjct: 57 LKRKMWWKNMKLKIILGLVVLILILIIIIVICG 89
Score = 27.1 bits (61), Expect = 5.1
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 26 IIIIIIIIIIIIIIINRIPI 45
+ II+ ++++I+I+I I I
Sbjct: 68 LKIILGLVVLILILIIIIVI 87
>gnl|CDD|216883 pfam02118, Srg, Srg family chemoreceptor.
Length = 275
Score = 38.7 bits (91), Expect = 0.004
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 8 YHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSN 48
Y K W + +I I+I++ II I+ ++ S
Sbjct: 160 YEKAVPWASTSLFQLIYFILILVFTIITSIVTSYKLAKLSK 200
Score = 28.7 bits (65), Expect = 6.5
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
+ ++III II I I+I + +
Sbjct: 121 SRYYKLVLIIIFIIPFSFIWNILISRVYVNPV 152
>gnl|CDD|205807 pfam13630, SdpI, SdpI/YhfL protein family. This family of
proteins includes the SdpI and YhfL proteins from B.
subtilis. The SdpI protein is a multipass integral
membrane protein that protects toxin-producing cells
from being killed. Killing is mediated by the exported
toxic protein SdpC an extracellular protein that
induces the synthesis of an immunity protein.
Length = 72
Score = 35.6 bits (83), Expect = 0.004
Identities = 7/28 (25%), Positives = 22/28 (78%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIII 40
L+ I +I++++ ++I+ I+ +I++++I
Sbjct: 33 LFIIGGLILLLLGLLILDILFLILLLLI 60
Score = 35.2 bits (82), Expect = 0.005
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
+I+ I+ +I++++I++ +II II
Sbjct: 46 LLILDILFLILLLLILVAVIIPIIYS 71
Score = 34.9 bits (81), Expect = 0.007
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIII 39
I+ I+ +I++++I++ +II II
Sbjct: 46 LLILDILFLILLLLILVAVIIPIIYS 71
Score = 34.5 bits (80), Expect = 0.009
Identities = 7/32 (21%), Positives = 23/32 (71%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIH 46
+++ ++I+ I+ +I++++I++ +II I +
Sbjct: 41 LLLLGLLILDILFLILLLLILVAVIIPIIYSY 72
Score = 32.2 bits (74), Expect = 0.073
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIII 33
+ F+I++++I++ +II II
Sbjct: 49 LDILFLILLLLILVAVIIPIIYS 71
Score = 31.4 bits (72), Expect = 0.11
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIII 38
L + I+ +I++++I++ +II II
Sbjct: 46 LLILDILFLILLLLILVAVIIPIIYS 71
Score = 30.6 bits (70), Expect = 0.23
Identities = 9/38 (23%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 4 NKKHYHK-HHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
N++++ K H + II +I++++ ++I+ I+ +I+
Sbjct: 19 NEENWRKAHRFAGKLFIIGGLILLLLGLLILDILFLIL 56
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 38.6 bits (91), Expect = 0.005
Identities = 6/31 (19%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 20 IIIIIIIIIIIIIIIIIIIIIN----RIPIH 46
I++ +++I++ + +I ++ + RIP+
Sbjct: 213 ILVFLLLIVLFLAVIAFVVFVEQAQRRIPVQ 243
>gnl|CDD|222059 pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 206
Score = 38.0 bits (89), Expect = 0.005
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNIS 50
++ +I+ +I III +I I+ +I I I +
Sbjct: 83 YLFSLILGLIGIIISFLIAFIVSLIFGNITISELLL 118
Score = 35.7 bits (83), Expect = 0.022
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
II+IIII +II II I I+ +I++ I S + I
Sbjct: 148 IILIIIIFLIIFIIFAIFKILNLILSLINNSSLLLIII 185
Score = 33.8 bits (78), Expect = 0.096
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
L+ +I+ +I III +I I+ +I I I I IG
Sbjct: 84 LFSLILGLIGIIISFLIAFIVSLIFGNIT-ISELLLILLIGL 124
Score = 33.8 bits (78), Expect = 0.11
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 6 KHYHKHHLWFIIIIIIIIII-------IIIIIIIIIIIIIIINRIPIHSNISNIGWYQNE 58
K Y K L ++++I+I I I II++I+I+I+++ + S Y
Sbjct: 11 KKYLKILLIIFLLLLIVIFIFLNEDGSIFFIILLILILIMLVLTTFSYDEKSKWNKYLLT 70
Query: 59 LP 60
LP
Sbjct: 71 LP 72
Score = 32.6 bits (75), Expect = 0.24
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 22/62 (35%)
Query: 13 LWFIIIIIIII----------------------IIIIIIIIIIIIIIIIINRIPIHSNIS 50
L I++I +II I+IIII +II II I + + ++
Sbjct: 116 LLLILLIGLIIALIFGAILLPLYYKFGYEKGRIILIIIIFLIIFIIFAIFKILNLILSLI 175
Query: 51 NI 52
N
Sbjct: 176 NN 177
Score = 31.8 bits (73), Expect = 0.52
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIIN 41
F +I + I++II ++++I+I I +N
Sbjct: 7 FYLIKKYLKILLIIFLLLLIVIFIFLN 33
Score = 31.5 bits (72), Expect = 0.57
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
L I+ +I +++III+++IIII+ I
Sbjct: 166 KILNLILSLINNSSLLLIIILLVIIIILYI 195
Score = 31.5 bits (72), Expect = 0.60
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPI 45
+IIII +II II I I+ +I+ +
Sbjct: 149 ILIIIIFLIIFIIFAIFKILNLILSLINNSS 179
Score = 31.5 bits (72), Expect = 0.70
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIII 39
+III+++IIII+ II I + I
Sbjct: 180 LLLIIILLVIIIILYIISYFISLKIY 205
Score = 30.7 bits (70), Expect = 0.98
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIIN 41
++III+++IIII+ II I + I
Sbjct: 181 LLIIILLVIIIILYIISYFISLKIYK 206
Score = 30.7 bits (70), Expect = 1.0
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIII 40
I I +++I++I +II +I I++
Sbjct: 111 ITISELLLILLIGLIIALIFGAILL 135
Score = 30.7 bits (70), Expect = 1.2
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIII 39
I +++I++I +II +I I++
Sbjct: 111 ITISELLLILLIGLIIALIFGAILL 135
Score = 30.3 bits (69), Expect = 1.4
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
I +++I++I +II +I I++ +
Sbjct: 112 TISELLLILLIGLIIALIFGAILLPL 137
Score = 30.3 bits (69), Expect = 1.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIII 40
+++III+++IIII+ II I
Sbjct: 174 LINNSSLLLIIILLVIIIILYIISYFI 200
Score = 30.3 bits (69), Expect = 1.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIII 38
+I +++III+++IIII+ II
Sbjct: 173 SLINNSSLLLIIILLVIIIILYII 196
Score = 29.9 bits (68), Expect = 1.8
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIII 40
+++III+++IIII+ II I + I
Sbjct: 180 LLLIIILLVIIIILYIISYFISLKI 204
Score = 29.9 bits (68), Expect = 2.0
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 1 MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIII 38
I + + +++III+++IIII+ II I
Sbjct: 163 AIFKILNLILSLINNSSLLLIIILLVIIIILYIISYFI 200
Score = 29.9 bits (68), Expect = 2.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPI 45
III +II II I I+ +I+ +I N +
Sbjct: 151 IIIIFLIIFIIFAIFKILNLILSLINNSSLL 181
Score = 29.5 bits (67), Expect = 2.5
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
+++I++I +II +I I++ +
Sbjct: 113 ISELLLILLIGLIIALIFGAILLPLY 138
Score = 29.5 bits (67), Expect = 2.5
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNIS 50
+I + I++II ++++I+I I
Sbjct: 7 FYLIKKYLKILLIIFLLLLIVIFIFLNEDGSIFFI 41
Score = 29.1 bits (66), Expect = 3.2
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 15/44 (34%)
Query: 13 LWFIIIIIIIIIIIII---------------IIIIIIIIIIIIN 41
+ +I III +I I I++I +II +I
Sbjct: 88 ILGLIGIIISFLIAFIVSLIFGNITISELLLILLIGLIIALIFG 131
Score = 29.1 bits (66), Expect = 3.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIII 38
L III+++IIII+ II I + I
Sbjct: 180 LLLIIILLVIIIILYIISYFISLKIY 205
Score = 29.1 bits (66), Expect = 3.4
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIII 40
+++I++I +II +I I++ +
Sbjct: 113 ISELLLILLIGLIIALIFGAILLPLYY 139
Score = 28.8 bits (65), Expect = 4.3
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 18/66 (27%)
Query: 16 IIIIIIIIIIIIII------------------IIIIIIIIIIINRIPIHSNISNIGWYQN 57
+++I++I +II +I II+IIII +II I I N+
Sbjct: 116 LLLILLIGLIIALIFGAILLPLYYKFGYEKGRIILIIIIFLIIFIIFAIFKILNLILSLI 175
Query: 58 ELPKKI 63
+
Sbjct: 176 NNSSLL 181
Score = 28.4 bits (64), Expect = 6.4
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRIPI 45
+++I + I++II ++++I+I I + I
Sbjct: 7 FYLIKKYLKILLIIFLLLLIVIFIFLNEDGSI 38
>gnl|CDD|221975 pfam13197, DUF4013, Protein of unknown function (DUF4013). This is
a family of uncharacterized proteins that is found in
archaea and bacteria.
Length = 167
Score = 37.2 bits (87), Expect = 0.005
Identities = 4/25 (16%), Positives = 17/25 (68%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIII 38
+ + +++I+I +++ ++ +I+ I
Sbjct: 143 YLLAFLVVIVIGLVVGLLGALIVGI 167
Score = 35.7 bits (83), Expect = 0.019
Identities = 4/25 (16%), Positives = 18/25 (72%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIII 39
+++ +++I+I +++ ++ +I+ I
Sbjct: 143 YLLAFLVVIVIGLVVGLLGALIVGI 167
Score = 35.3 bits (82), Expect = 0.023
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIII 35
L F+++I+I +++ ++ +I+ I
Sbjct: 145 LAFLVVIVIGLVVGLLGALIVGI 167
Score = 35.3 bits (82), Expect = 0.027
Identities = 4/25 (16%), Positives = 17/25 (68%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIII 40
++ +++I+I +++ ++ +I+ I
Sbjct: 143 YLLAFLVVIVIGLVVGLLGALIVGI 167
Score = 34.5 bits (80), Expect = 0.045
Identities = 4/31 (12%), Positives = 17/31 (54%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
W ++ +++I+I +++ ++ +I+
Sbjct: 136 SRIGWLAYLLAFLVVIVIGLVVGLLGALIVG 166
Score = 33.0 bits (76), Expect = 0.14
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
L +I ++ +II III+ ++ +++
Sbjct: 51 LKAFVIGLVYLIIPIIILALLALLVGFAA 79
Score = 32.6 bits (75), Expect = 0.19
Identities = 4/29 (13%), Positives = 17/29 (58%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
+ +++I+++I+ I+I +++ +
Sbjct: 87 GLGVFGLLLILLLILAILIALLLPAALAR 115
Score = 31.5 bits (72), Expect = 0.50
Identities = 5/28 (17%), Positives = 18/28 (64%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINR 42
+ +++I+++I+ I+I +++ + R
Sbjct: 88 LGVFGLLLILLLILAILIALLLPAALAR 115
Score = 31.5 bits (72), Expect = 0.54
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
F+I ++ +II III+ ++ +++ + P + + G
Sbjct: 52 KAFVIGLVYLIIPIIILALLALLVGFAASASPGAAGLGVFG 92
Score = 31.1 bits (71), Expect = 0.69
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
+I ++ +II III+ ++ +++
Sbjct: 51 LKAFVIGLVYLIIPIIILALLALLVGFAASASPGAAGLG 89
Score = 30.3 bits (69), Expect = 1.2
Identities = 4/25 (16%), Positives = 17/25 (68%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIII 39
+ + +++I+++I+ I+I +++
Sbjct: 85 AAGLGVFGLLLILLLILAILIALLL 109
Score = 29.1 bits (66), Expect = 2.4
Identities = 4/24 (16%), Positives = 17/24 (70%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIIII 40
+ + +++I+++I+ I+I +++
Sbjct: 86 AGLGVFGLLLILLLILAILIALLL 109
Score = 28.8 bits (65), Expect = 3.3
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
+ +I ++ +II III+ ++ + + ++ G
Sbjct: 51 LKAFVIGLVYLIIPIIILALLALLVGFAASASPG 84
Score = 28.8 bits (65), Expect = 3.6
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
+ +I ++ +II III+ ++ ++ ++ G
Sbjct: 51 LKAFVIGLVYLIIPIIILALLALLVGFAASASPGAAGL 88
Score = 28.4 bits (64), Expect = 5.6
Identities = 3/24 (12%), Positives = 14/24 (58%)
Query: 22 IIIIIIIIIIIIIIIIIIINRIPI 45
++ +++I+I +++ ++ I
Sbjct: 143 YLLAFLVVIVIGLVVGLLGALIVG 166
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular
trafficking and secretion].
Length = 436
Score = 38.4 bits (90), Expect = 0.006
Identities = 7/40 (17%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIIN----RIPIHS 47
+ + I+ +++++++ + II +++ + RIPI
Sbjct: 208 PTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQY 247
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 38.3 bits (90), Expect = 0.008
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 18 IIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNEL-----PKKIKARGKDAHL 72
+I +II I++IIII + +I+ + + I + + EL +++ + K +L
Sbjct: 1 GMIYLIIAIVVIIIIAYLAGLILRK-RNYKRIDELEERKQELENLPVNDELE-KVKKLNL 58
Query: 73 NHEELVQLMKWKQ 85
+ + +W+Q
Sbjct: 59 TGQSEEKFEEWRQ 71
Score = 32.5 bits (75), Expect = 0.52
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 15 FIIIIIIIIIIIIIIIIIIII 35
+II I++IIII + +I+
Sbjct: 3 IYLIIAIVVIIIIAYLAGLIL 23
Score = 32.1 bits (74), Expect = 0.64
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 13 LWFIIIIIIIIIIIIIIIIII 33
++ II I++IIII + +I+
Sbjct: 3 IYLIIAIVVIIIIAYLAGLIL 23
Score = 31.7 bits (73), Expect = 0.71
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 13 LWFIIIIIIIIIIIIIIIIIII 34
+ ++II I++IIII + +I+
Sbjct: 2 MIYLIIAIVVIIIIAYLAGLIL 23
>gnl|CDD|221704 pfam12676, DUF3796, Protein of unknown function (DUF3796). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 120 amino acids in length.
Length = 121
Score = 35.8 bits (83), Expect = 0.009
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 15 FIIIIIIIIIIIIIIII-----IIIIIIIIINRIPIHSNISNIGWYQNELPKK 62
FI+ +++ I+++I+II II ++I I I + + I ++ Y+ K+
Sbjct: 68 FIVALVLGSIMLLIVIIFENLEIIRLLIAISFAIALLTFIISLLIYEYREKKQ 120
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 37.5 bits (88), Expect = 0.010
Identities = 6/47 (12%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 5 KKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIIN----RIPIHS 47
+ ++ I+ ++++++ + +I++++ + RIPI
Sbjct: 130 INLFSLLSSAGGLLSILYLLLLLLATLAVILLVVYLQEARRRIPIQY 176
>gnl|CDD|223072 PHA03393, odv-e66, occlusion-derived virus envelope protein E66;
Provisional.
Length = 682
Score = 38.0 bits (89), Expect = 0.011
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 22 IIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGKDAHLNHEELVQLM 81
+I++I++II+++IIIII++ + ++N N P H++L
Sbjct: 2 MIVLILVIIVVVIIIIILLWQSNNNNNTPNPP-NPPPNPPPPPPPPPTPEDYHDDLDTFE 60
Query: 82 KW-KQTLNY 89
++ K TL
Sbjct: 61 RYYKNTLTQ 69
Score = 30.6 bits (70), Expect = 1.9
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISN 51
+I++II+++IIIII++ P
Sbjct: 3 IVLILVIIVVVIIIIILLWQSNNNNNTPNPPNPPPNPP 40
Score = 29.5 bits (67), Expect = 4.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIP 44
L +II+++IIIII++ P
Sbjct: 5 LILVIIVVVIIIIILLWQSNNNNNTPNPPNPP 36
Score = 29.1 bits (66), Expect = 5.3
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 13 LWFIIIIIIIIIIIIII--IIIIIIIIIIINRIPI 45
+ ++II+++IIIII++ N P
Sbjct: 4 VLILVIIVVVIIIIILLWQSNNNNNTPNPPNPPPN 38
>gnl|CDD|217187 pfam02687, FtsX, FtsX-like permease family. This is a family of
predicted permeases and hypothetical transmembrane
proteins. Buchnera aphidicola lolC has been shown to
transport lipids targeted to the outer membrane across
the inner membrane. Both lolC and Streptococcus
cristatus tptD have been shown to require ATP. This
region contains three transmembrane helices.
Length = 121
Score = 35.3 bits (82), Expect = 0.012
Identities = 6/33 (18%), Positives = 20/33 (60%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPI 45
+ I+I++ +++I++I ++ ++ I +I
Sbjct: 89 IDPIVILLSLLLILLIALLASLLPARRILKISP 121
Score = 34.9 bits (81), Expect = 0.016
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
I I+I++ +++I++I ++ ++ RI
Sbjct: 84 SLPLSIDPIVILLSLLLILLIALLASLLPARRI 116
Score = 33.8 bits (78), Expect = 0.045
Identities = 7/31 (22%), Positives = 21/31 (67%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPI 45
F + + I I+I++ +++I++I ++ + +P
Sbjct: 83 FSLPLSIDPIVILLSLLLILLIALLASLLPA 113
Score = 33.0 bits (76), Expect = 0.094
Identities = 5/27 (18%), Positives = 19/27 (70%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIIIINRI 43
+++ ++I+++ ++I++ ++ I I R
Sbjct: 1 LLLSVLILLLALLILLNLLSISISERR 27
Score = 32.2 bits (74), Expect = 0.14
Identities = 7/38 (18%), Positives = 21/38 (55%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNI 49
L I I+I++ +++I++I ++ ++ R + +
Sbjct: 84 SLPLSIDPIVILLSLLLILLIALLASLLPARRILKISP 121
Score = 30.7 bits (70), Expect = 0.53
Identities = 5/28 (17%), Positives = 17/28 (60%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIII 40
+ I I+I++ +++I++I ++ +
Sbjct: 83 FSLPLSIDPIVILLSLLLILLIALLASL 110
Score = 30.3 bits (69), Expect = 0.76
Identities = 6/31 (19%), Positives = 19/31 (61%)
Query: 23 IIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
+++ ++I+++ ++I++ + I I IG
Sbjct: 1 LLLSVLILLLALLILLNLLSISISERRREIG 31
Score = 29.9 bits (68), Expect = 1.0
Identities = 5/31 (16%), Positives = 18/31 (58%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
+ + + I I+I++ +++I++I ++
Sbjct: 79 SFLGFSLPLSIDPIVILLSLLLILLIALLAS 109
Score = 29.9 bits (68), Expect = 1.0
Identities = 4/23 (17%), Positives = 18/23 (78%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIII 38
+++ ++I+++ ++I++ ++ I I
Sbjct: 1 LLLSVLILLLALLILLNLLSISI 23
Score = 29.1 bits (66), Expect = 1.7
Identities = 4/23 (17%), Positives = 16/23 (69%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIII 36
+ ++I+++ ++I++ ++ I I
Sbjct: 1 LLLSVLILLLALLILLNLLSISI 23
Score = 29.1 bits (66), Expect = 1.8
Identities = 4/23 (17%), Positives = 17/23 (73%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIII 37
++ ++I+++ ++I++ ++ I I
Sbjct: 1 LLLSVLILLLALLILLNLLSISI 23
Score = 28.0 bits (63), Expect = 5.1
Identities = 4/46 (8%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 8 YHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
K ++ ++++ +++ +I ++ +++ ++ + S I++
Sbjct: 38 ASKKQIFKLLLLEALLLGLIGSLLGLLLGFLLA--YLLSSAIASFL 81
>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family. This family
includes a range of acyltransferase enzymes. This domain
is found in many as yet uncharacterized C. elegans
proteins and it is approximately 300 amino acids long.
Length = 326
Score = 37.1 bits (86), Expect = 0.013
Identities = 6/60 (10%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 12 HLWFIIIIIIIIIIIIII------------IIIIIIIIIIINRIPIHSNISNIGWYQNEL 59
HLWF+ + + +++ ++ ++++ +++++ + + N L
Sbjct: 124 HLWFLPALFVFYLLLPLLLRLLRKLKKLLLLLLLALLLLLSLLYILILLVGLPPTVLNLL 183
>gnl|CDD|222381 pfam13789, DUF4181, Domain of unknown function (DUF4181).
Length = 109
Score = 35.0 bits (81), Expect = 0.015
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 6 KHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
KH +K H II++II +II+II I I I +
Sbjct: 24 KHVNKLHKKGEIILLIIFLIILIIFIYIFITEYLYMYY 61
Score = 34.2 bits (79), Expect = 0.030
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 4 NKKHYHKHHLWFIIIIIIIIIIIIIII-------IIIIIIIIIIN 41
NK H + II +II+II I I I +I + +I++
Sbjct: 27 NKLHKKGEIILLIIFLIILIIFIYIFITEYLYMYYLIFLFLILLF 71
>gnl|CDD|223659 COG0586, DedA, Uncharacterized membrane-associated protein
[Function unknown].
Length = 208
Score = 36.1 bits (84), Expect = 0.021
Identities = 3/30 (10%), Positives = 20/30 (66%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIIIIIIIIII 38
HL +++ I+++ ++++++++ ++ +
Sbjct: 170 VLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 33.8 bits (78), Expect = 0.095
Identities = 2/33 (6%), Positives = 22/33 (66%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
+ +++++ I+++ ++++++++ ++ + R
Sbjct: 169 DVLVHLLLVLLGILVLAVLVLVLLLALLWWLRR 201
Score = 32.3 bits (74), Expect = 0.37
Identities = 2/29 (6%), Positives = 17/29 (58%)
Query: 6 KHYHKHHLWFIIIIIIIIIIIIIIIIIII 34
+ L I+++ ++++++++ ++ +
Sbjct: 171 LVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 31.9 bits (73), Expect = 0.42
Identities = 1/27 (3%), Positives = 21/27 (77%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIII 40
+++ ++++++ I+++ ++++++++
Sbjct: 168 IDVLVHLLLVLLGILVLAVLVLVLLLA 194
Score = 31.5 bits (72), Expect = 0.52
Identities = 2/36 (5%), Positives = 18/36 (50%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIP 44
H + I+++ ++++++++ ++ + +
Sbjct: 173 HLLLVLLGILVLAVLVLVLLLALLWWLRRRKKKKAR 208
Score = 31.1 bits (71), Expect = 0.72
Identities = 1/30 (3%), Positives = 22/30 (73%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
+ ++ ++++++ I+++ ++++++++ +
Sbjct: 166 EVIDVLVHLLLVLLGILVLAVLVLVLLLAL 195
Score = 31.1 bits (71), Expect = 0.86
Identities = 2/31 (6%), Positives = 17/31 (54%)
Query: 6 KHYHKHHLWFIIIIIIIIIIIIIIIIIIIII 36
L + I+++ ++++++++ ++ +
Sbjct: 169 DVLVHLLLVLLGILVLAVLVLVLLLALLWWL 199
Score = 29.9 bits (68), Expect = 1.8
Identities = 1/30 (3%), Positives = 22/30 (73%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
+++ ++++++ I+++ ++++++++ +
Sbjct: 167 VIDVLVHLLLVLLGILVLAVLVLVLLLALL 196
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 36.7 bits (85), Expect = 0.025
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
II I+ III++I II+ + + + + + G
Sbjct: 157 AKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGG 198
Score = 34.8 bits (80), Expect = 0.087
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
I II I+ III++I II+ + N G
Sbjct: 158 KINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGG 198
Score = 34.8 bits (80), Expect = 0.090
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 13 LWFIIIIII--------IIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
+ + ++ + I II I+ III++I II+ + N+
Sbjct: 142 IALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNL 189
Score = 34.0 bits (78), Expect = 0.17
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
II I+ III++I II+ + + N +
Sbjct: 161 SIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSF 200
Score = 32.8 bits (75), Expect = 0.33
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
I+ III++I II+ + P + + G
Sbjct: 161 SIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFG 201
Score = 30.1 bits (68), Expect = 2.2
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
L+ + + +++ +I+I III ++ + + +S I
Sbjct: 417 LYALYASGLPPLLLGVILIAGGIIIYLLVYLGLGRLLSAI 456
Score = 29.7 bits (67), Expect = 3.1
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIIN 41
II+ ++I++I+ I+ ++I+ ++
Sbjct: 236 RAIILSLLIVLILYILGALVIVGVLP 261
Score = 28.6 bits (64), Expect = 6.5
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
III++I II+ + + P + I
Sbjct: 165 ILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGIL 204
Score = 28.6 bits (64), Expect = 6.7
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
II+ ++I++I+ I+ ++I + +++
Sbjct: 236 RAIILSLLIVLILYILGALVIVGVLPAGDLAASA 269
Score = 28.6 bits (64), Expect = 7.0
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 19 IIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELP 60
II+ ++I++I+ I+ ++I+ +P ++ P
Sbjct: 236 RAIILSLLIVLILYILGALVIVGVLP----AGDLAASAPSAP 273
Score = 28.6 bits (64), Expect = 7.9
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIIN 41
II+ ++I++I+ I+ ++I+ ++
Sbjct: 237 AIILSLLIVLILYILGALVIVGVLPA 262
>gnl|CDD|221825 pfam12877, DUF3827, Domain of unknown function (DUF3827). This
family contains the human KIAA1549 protein which has
been found to be fused fused to BRAF gene in many cases
of pilocytic astrocytomas. The fusion is due mainly to a
tandem duplication of 2 Mb at 7q34. Although nothing is
known about the function of KIAA1549 protein, the BRAF
protein is a well characterized oncoprotein. It is a
serine/threonine protein kinase which is implicated in
MAP/ERK signalling, a critical pathway for the
regulation of cell division, differentiation and
secretion.
Length = 684
Score = 36.1 bits (83), Expect = 0.034
Identities = 31/171 (18%), Positives = 51/171 (29%), Gaps = 23/171 (13%)
Query: 258 QNNKPDE------STVPAASSLPSEPEDTSSLQSLPSEKSLDDGS-IGNNHTDDVTNDSV 310
Q+ K DE + +P ED P KS DGS +
Sbjct: 332 QHGKDDEMIIQEPAPLPPLKKESLPIEDAEV--PTPKSKSSQDGSSNKKRRRGRKSPSDG 389
Query: 311 MTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANN 370
+ G+ +N + P+ P A + E KK +E ++
Sbjct: 390 DSEGSSVISNRSSREKSGRPSTTPSVT-------AQQKPTKEEGRKKPAPPSGTDEQLSS 442
Query: 371 GESSEAAKPEKNGASEPESVSESEAPVTKEGEQKVPVEPTAPVPVESKTET 421
E +S+P S + Q + ++P PV + E
Sbjct: 443 ASIFEHVDRLSRPSSDPYDRSSGKI-------QLIAMQPMPAPPVPPRFEP 486
>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter.
This family represents a high-affinity plasma-membrane
choline transporter in C.elegans which is thought to be
rate-limiting for ACh synthesis in cholinergic nerve
terminals.
Length = 327
Score = 35.7 bits (83), Expect = 0.035
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINRIPI 45
I+ II ++ +I++++II + RIP+
Sbjct: 1 IVAIIFTVLTLILLLLIIFLRKRIPL 26
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5
subunit [Transcription].
Length = 548
Score = 36.2 bits (83), Expect = 0.036
Identities = 39/268 (14%), Positives = 82/268 (30%), Gaps = 35/268 (13%)
Query: 152 MAIPEIEGIDYTTKEYLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTHYVAAELK 211
+ P+I ID + V FI++ ++ L K+ + N Q E + H E
Sbjct: 97 LTNPDI--IDPKELKKRDQVLFIHDCLDELQKQLEQYEAQENEEQTERHEF-HIANLENI 153
Query: 212 PELLEDIRSLSSNNTNNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAAS 271
+ L++ + + +V N D ++ E +P S A
Sbjct: 154 LKKLQN-NEMDPEPVEEFQDDIKYYVE-NNDDPDFIEYDTIYEDMGCEIQPSSSNNEA-- 209
Query: 272 SLPSEPEDTSSLQSLPSEKSL----------------DDGSIGNNHTDDVTNDSVMTLGA 315
P E + +SL S+ S K D + + + S+ +
Sbjct: 210 --PKEGNNQTSLSSIRSSKKQERSPKKKAPQRDVSISDRATTPIAPGVESASQSISSTPT 267
Query: 316 ESDTNTNDLPDPSTPTN-------NPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVA 368
T+T P ++ +++++ + K E +
Sbjct: 268 PVSTDTPLHTVKDDSIKFDNSTLGTPTTHVSMKKKESENDSEQQLNFPKDSTDEIRKTIQ 327
Query: 369 NNGESSEAAKPEKNGASEPESVSESEAP 396
++ E++ A + E +
Sbjct: 328 HDVETNAAFQNPL---FNDELKWWLASK 352
>gnl|CDD|222388 pfam13800, Sigma_reg_N, Sigma factor regulator N-terminal. This
domain is found near the N-terminus of a sigma factor
regulator. The N-terminus is responsible for
interaction with the sigma factor.
Length = 95
Score = 33.4 bits (77), Expect = 0.036
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSN 48
I+ II+ II+ ++I+II I+I ++ N
Sbjct: 12 SILRIIVTSIILALLIVIISILISLLYYGNGKLN 45
Score = 30.7 bits (70), Expect = 0.34
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIIIINRIPIHSN 48
II+ II+ ++I+II I+I ++ ++SN
Sbjct: 16 IIVTSIILALLIVIISILISLLYYGNGKLNSN 47
>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel. The
family carries eight putative transmembrane domains,
and, although it has no similarity to other known
channel proteins, it is clearly a calcium-activated
ionic channel. It is expressed in various secretory
epithelia, the retina and sensory neurons, and mediates
receptor-activated chloride currents in diverse
physiological processes.
Length = 449
Score = 35.7 bits (83), Expect = 0.041
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 6 KHY-HKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
+Y L ++ I ++++ I ++I III I I+
Sbjct: 110 PYYPPWKRLLRQLLSIPVVLLFIGLVIGIIIGIFILR 146
Score = 31.0 bits (71), Expect = 1.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
I ++++ I ++I III I I+ I +
Sbjct: 124 SIPVVLLFIGLVIGIIIGIFILRIFL 149
Score = 30.6 bits (70), Expect = 1.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIIN 41
++++ I ++I III I I+ I +
Sbjct: 125 IPVVLLFIGLVIGIIIGIFILRIFLSE 151
Score = 30.6 bits (70), Expect = 1.6
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 6 KHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIP 44
K Y HL ++ +I+ +++++ +I +I IP
Sbjct: 400 KGYLNDHLL-AARLLFFLILEHVVLLLKFLIAWLIPDIP 437
Score = 30.3 bits (69), Expect = 2.5
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIII 39
++++ I ++I III I I+ I +
Sbjct: 125 IPVVLLFIGLVIGIIIGIFILRIFLS 150
Score = 28.3 bits (64), Expect = 7.9
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
+++ I ++I III I I+ I + +
Sbjct: 127 VVLLFIGLVIGIIIGIFILRIFLSEV 152
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 35.5 bits (82), Expect = 0.043
Identities = 25/117 (21%), Positives = 37/117 (31%), Gaps = 25/117 (21%)
Query: 322 NDLPDPSTPTNNPPAPSQVEMDGADDN----------ASAEPPLKKTKLSEPENEVANNG 371
+ LPD PT P D +D+ +E K E
Sbjct: 6 DSLPDEKAPTK-KPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRN 64
Query: 372 ESSEA--------------AKPEKNGASEPESVSESEAPVTKEGEQKVPVEPTAPVP 414
+ AKP K+ S S +S+AP T+ E++ P E P+
Sbjct: 65 PKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIA 121
>gnl|CDD|181988 PRK09609, PRK09609, hypothetical protein; Provisional.
Length = 312
Score = 35.4 bits (82), Expect = 0.044
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 4 NKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIII 39
K + K L F I +II++III+ I ++ +
Sbjct: 158 EKTNEEKSLLNFSWIAALIILVIIILFIYFVVGFLD 193
Score = 35.4 bits (82), Expect = 0.048
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 1 MIQNKKHY----HKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
+++ KK ++ I +II++III+ I ++ ++ + S I
Sbjct: 149 LLEKKKKKLEKTNEEKSLLNFSWIAALIILVIIILFIYFVVGFLDPDFFIQSFSFI 204
Score = 35.4 bits (82), Expect = 0.052
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQN 57
++ I +II++III+ I ++ + I + + +N
Sbjct: 166 LLNFSWIAALIILVIIILFIYFVVGFLDPDFFIQSFSFIKN 206
Score = 29.6 bits (67), Expect = 3.4
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPI 45
I++III+ I ++ + I + I
Sbjct: 177 ILVIIILFIYFVVGFLDPDFFIQSFSFIKN 206
>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease
component [Defense mechanisms].
Length = 286
Score = 35.3 bits (81), Expect = 0.051
Identities = 4/47 (8%), Positives = 21/47 (44%)
Query: 8 YHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
+ + I+ +++ +I +++++I ++ + S + +
Sbjct: 128 VSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLL 174
Score = 31.1 bits (70), Expect = 1.1
Identities = 5/32 (15%), Positives = 18/32 (56%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
W I I ++I+++ ++ +++ +++ R
Sbjct: 249 LGGWRNDGIWISLLILLLFAVVFLLLGLLLLR 280
Score = 30.3 bits (68), Expect = 2.0
Identities = 3/45 (6%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 8 YHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
+ L ++++ +++++ + + +++ +++ S + N+
Sbjct: 164 FLGSLLLLLLLL--LLLLLATVALGLLLSTFAKSQLQCASAVGNL 206
Score = 28.7 bits (64), Expect = 5.1
Identities = 2/42 (4%), Positives = 18/42 (42%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
L ++++++++ + + +++ + N+ +
Sbjct: 168 LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209
>gnl|CDD|220688 pfam10317, 7TM_GPCR_Srd, Serpentine type 7TM GPCR chemoreceptor
Srd. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srd is part of the
larger Str superfamily of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 293
Score = 35.2 bits (82), Expect = 0.051
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPIH 46
+I+I + I + ++I+I ++ + +P+
Sbjct: 121 LILIFFLHYIPSLSQLLIVIFLVPTDFLPVE 151
>gnl|CDD|223701 COG0628, yhhT, Predicted permease, member of the PurR regulon
[General function prediction only].
Length = 355
Score = 35.3 bits (82), Expect = 0.056
Identities = 9/49 (18%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRI-PIHSNISNIGWYQNELPK 61
+++++++I+++I+++ +++I +I +I + N+ + Q L K
Sbjct: 65 LLAVLLVLLLILLLIVLLGLLVIPSLIEQIQNLIKNLPGLDLLQARLAK 113
Score = 31.8 bits (73), Expect = 0.58
Identities = 8/50 (16%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 15 FIIIIIIIIIIIIIIIIIIII---IIIIINRIP-IHSNISNIGWYQNELP 60
++++I+++I+++ +++I + I +I +P + + + LP
Sbjct: 70 LVLLLILLLIVLLGLLVIPSLIEQIQNLIKNLPGLDLLQARLAKLLESLP 119
Score = 28.0 bits (63), Expect = 9.8
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIH 46
W ++++I+ ++I I I+ ++ R+ +H
Sbjct: 268 GGPWGALLVLIVFLVIQQIEGNILRPKLMGKRLGLH 303
>gnl|CDD|224196 COG1277, NosY, ABC-type transport system involved in multi-copper
enzyme maturation, permease component [General function
prediction only].
Length = 278
Score = 34.7 bits (80), Expect = 0.060
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
F+ +++I+III+I I ++ ++++ S+IS +
Sbjct: 110 FLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLL 148
Score = 28.2 bits (63), Expect = 7.4
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 18 IIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
II++++ II +I++ I +++I P + +S +
Sbjct: 183 IILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPL 220
>gnl|CDD|109608 pfam00558, Vpu, Vpu protein. The Vpu protein contains an
N-terminal transmembrane spanning region and a
C-terminal cytoplasmic region. The HIV-1 Vpu protein
stimulates virus production by enhancing the release of
viral particles from infected cells. The VPU protein
binds specifically to CD4.
Length = 81
Score = 32.3 bits (74), Expect = 0.061
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGKD 69
L II +I +I+ +II I++ I+ +I I L K+I+ R +D
Sbjct: 2 LLLEIIGLIALIVALIINIVVWTIVYREYRKIKKQREI-------LRLIKRIRERAED 52
Score = 29.2 bits (66), Expect = 0.92
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIII 37
L I +I +I+ +II I++ I+
Sbjct: 2 LLLEIIGLIALIVALIINIVVWTIVYR 28
>gnl|CDD|177217 MTH00161, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 113
Score = 33.2 bits (77), Expect = 0.067
Identities = 9/24 (37%), Positives = 21/24 (87%)
Query: 18 IIIIIIIIIIIIIIIIIIIIIIIN 41
+I+II++II++I II++I+ +++
Sbjct: 1 MILIILLIILLISIILMILASLLS 24
Score = 32.4 bits (75), Expect = 0.11
Identities = 11/31 (35%), Positives = 24/31 (77%), Gaps = 4/31 (12%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIII----IINR 42
+I+II++II++I II++I+ ++ I++R
Sbjct: 1 MILIILLIILLISIILMILASLLSKKSIMDR 31
Score = 31.3 bits (72), Expect = 0.32
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIII 35
+ II++II++I II++I+ ++
Sbjct: 1 MILIILLIILLISIILMILASLL 23
>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 292
Score = 34.5 bits (79), Expect = 0.075
Identities = 29/148 (19%), Positives = 42/148 (28%), Gaps = 10/148 (6%)
Query: 277 PEDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDP---STPTNN 333
P +SS +EKS+D N ++ + DL P STPT
Sbjct: 34 PSTSSSEAPASAEKSID-----LNGATQANAQQPAPGPTSAENTSQDLSLPPISSTPTQG 88
Query: 334 PPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESVSES 393
+Q + + + N VA SV +
Sbjct: 89 QEPLAQDGQQRVEVQGDLNNAAVQPQNLSQLNNVAVTSTLPTEPATVA--PVRNASVPTA 146
Query: 394 EAPVTKEGEQKVPVEPTAPVPVESKTET 421
E P + V A P +KT T
Sbjct: 147 ERPAITRPVRAQAVSEPAVEPKAAKTAT 174
>gnl|CDD|233631 TIGR01906, integ_TIGR01906, integral membrane protein TIGR01906.
This model represents a family of highly hydrophobic,
uncharacterized predicted integral membrane proteins
found almost entirely in low-GC Gram-positive bacteria,
although a member is also found in the early-branching
bacterium Aquifex aeolicus.
Length = 207
Score = 34.2 bits (79), Expect = 0.079
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 21 IIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKI----KARGKDAHLNHEE 76
I++ I+II I+ + II+ IN P + I N++PK++ + KD L +
Sbjct: 4 ILLFIVIIFFIVSLSIILTINFSPKFHAL-EIQSN-NDIPKRVGLEKEEILKDYSLMIKY 61
Query: 77 LVQLMKWKQTLNYLVKVNTPRAV--MMETKKAFKKL 110
L K+ L + V + K F L
Sbjct: 62 LNN--PKKEVLKLPNFPFSDSGVFHFKDVKNLFSLL 95
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen
and teichoic acid [General function prediction only].
Length = 480
Score = 34.7 bits (80), Expect = 0.090
Identities = 4/47 (8%), Positives = 28/47 (59%)
Query: 3 QNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNI 49
+ ++ L + +++++++ +I+++++++I ++ P+ + +
Sbjct: 73 EYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALL 119
Score = 30.9 bits (70), Expect = 1.4
Identities = 5/38 (13%), Positives = 26/38 (68%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
+I++ +++++++ +I+++++++I PI ++ +
Sbjct: 82 LLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALL 119
Score = 29.7 bits (67), Expect = 3.2
Identities = 6/39 (15%), Positives = 19/39 (48%)
Query: 1 MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIII 39
+ + K L + ++++I I ++ ++++ II
Sbjct: 281 YAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPII 319
>gnl|CDD|147012 pfam04647, AgrB, Accessory gene regulator B. The arg locus
consists of two transcripts: RNAII and RNAIII. RNAII
encodes four genes (agrA, B, C, and D) whose gene
products assemble a quorum sensing system. AgrB and AgrD
are essential for the production of the autoinducing
peptide which functions as a signal for quorum sensing.
AgrB is a transmembrane protein.
Length = 185
Score = 33.7 bits (78), Expect = 0.092
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 2 IQNKKHYHKHHLWFIIIIIIIIIIIIII--------IIIIIIIIIIINRIPI 45
I N++ K + II+++I+++I +I+ +I++ I++ I +PI
Sbjct: 128 ITNEELRKKLKIKSIIVLLILLVISLILSENYFILLLIVLGILLQSITLLPI 179
Score = 31.8 bits (73), Expect = 0.44
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 6 KHYHKHHLWFIIIIIIIIIII--------IIIIIIIIIIIIIINRIPI 45
K + + +I+ ++I ++I I II+ II +III P
Sbjct: 74 KSSLRCFIISLILFVLIPLLIKLISLNNYIAIILFIISLIIIYKYAPA 121
Score = 29.5 bits (67), Expect = 2.2
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 24/68 (35%)
Query: 12 HLWFIIIIIIIIIIIIII------------------------IIIIIIIIIIINRIPIHS 47
+ + II+ II +III II+++I+++I + +
Sbjct: 100 NNYIAIILFIISLIIIYKYAPADTPKKPITNEELRKKLKIKSIIVLLILLVISLILSENY 159
Query: 48 NISNIGWY 55
I +
Sbjct: 160 FILLLIVL 167
>gnl|CDD|177215 MTH00158, ATP8, ATP synthase F0 subunit 8; Provisional.
Length = 32
Score = 30.5 bits (70), Expect = 0.096
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 13 LWFIIIIIIIIIIIIIIIII 32
W I+ I+ +I I+ I+
Sbjct: 8 NWLILFILFLITFILFNILN 27
Score = 27.4 bits (62), Expect = 1.1
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 13 LWFIIIIIIIIIIIIIIIIII 33
+ ++I+ I+ +I I+ I+
Sbjct: 7 MNWLILFILFLITFILFNILN 27
Score = 27.0 bits (61), Expect = 1.8
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 24 IIIIIIIIIIIIIIIIIN 41
+I+ I+ +I I+ I+N
Sbjct: 10 LILFILFLITFILFNILN 27
>gnl|CDD|221690 pfam12650, DUF3784, Domain of unknown function (DUF3784). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria and
archaea. Proteins in this family are typically between
96 and 110 amino acids in length.
Length = 96
Score = 32.2 bits (74), Expect = 0.098
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 14 WFIIIIIIIIIIIIIIIIIII 34
+FII II I+++I ++I +
Sbjct: 70 YFIIAIIAFIVLLIFLVIYLA 90
Score = 32.2 bits (74), Expect = 0.10
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
L + + II II I+++I ++I + +
Sbjct: 62 LLSLFLSKYFIIAIIAFIVLLIFLVIYLAK 91
Score = 31.0 bits (71), Expect = 0.25
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 13/43 (30%)
Query: 13 LWFIIIII-------------IIIIIIIIIIIIIIIIIIIINR 42
L II++I I II I+++I ++I + NR
Sbjct: 52 LIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIYLAKGNR 94
Score = 29.5 bits (67), Expect = 0.86
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 13/51 (25%)
Query: 4 NKKHYHKHHLWFIIIIIIIIII-------------IIIIIIIIIIIIIIIN 41
++K K F+ +I II++I I II I+++I ++I
Sbjct: 38 DEKKLCKFMGNFMFLIGIILLIGALLSLFLSKYFIIAIIAFIVLLIFLVIY 88
Score = 29.5 bits (67), Expect = 0.93
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 11 HHLWFIIIIIIIIIIIIIIIII 32
+ II I+++I ++I +
Sbjct: 69 KYFIIAIIAFIVLLIFLVIYLA 90
>gnl|CDD|148697 pfam07242, DUF1430, Protein of unknown function (DUF1430). This
family represents the C-terminus (approximately 120
residues) of a number of hypothetical bacterial
proteins of unknown function. These are possibly
membrane proteins involved in immunity.
Length = 100
Score = 32.2 bits (74), Expect = 0.10
Identities = 6/29 (20%), Positives = 18/29 (62%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
+W +I+ I+ II++ ++++++I
Sbjct: 50 VWVFGLILAFILTKSNIILLFVLVLLLIE 78
Score = 32.2 bits (74), Expect = 0.11
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
H ++II +I+ + +I+ I+ II+
Sbjct: 40 HKTYLIIQLIVWVFGLILAFILTKSNIIL 68
Score = 29.5 bits (67), Expect = 0.93
Identities = 5/28 (17%), Positives = 20/28 (71%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINR 42
II++ ++++++I +++I++I + +
Sbjct: 65 NIILLFVLVLLLIELLLILLIQMKKEKK 92
Score = 29.1 bits (66), Expect = 1.3
Identities = 4/29 (13%), Positives = 18/29 (62%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIII 39
I++ ++++++I +++I++I +
Sbjct: 62 TKSNIILLFVLVLLLIELLLILLIQMKKE 90
Score = 28.3 bits (64), Expect = 2.8
Identities = 5/29 (17%), Positives = 20/29 (68%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
+ II++ ++++++I +++I++I +
Sbjct: 59 FILTKSNIILLFVLVLLLIELLLILLIQM 87
Score = 28.3 bits (64), Expect = 2.9
Identities = 5/27 (18%), Positives = 19/27 (70%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIIN 41
II++ ++++++I +++I++I +
Sbjct: 64 SNIILLFVLVLLLIELLLILLIQMKKE 90
Score = 26.8 bits (60), Expect = 8.0
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 23 IIIIIIIIIIIIIIIIIINRIPI 45
+II +I+ + +I+ I+ + I
Sbjct: 44 LIIQLIVWVFGLILAFILTKSNI 66
>gnl|CDD|221699 pfam12669, P12, Virus attachment protein p12 family. This family
of proteins are related to Virus attachment protein p12
from the African swine fever virus. The family appears
to contain an N-terminal signal peptide followed by a
short cysteine rich region. The cysteine rich region is
extremely variable and it is possible that only the
N-terminal region is homologous.
Length = 52
Score = 30.8 bits (70), Expect = 0.11
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 16 IIIIIIIIIIIIIIIIIIIII 36
III +II + ++I
Sbjct: 1 TIIIGLIIAAAVAYVLIRKFF 21
Score = 30.8 bits (70), Expect = 0.11
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 17 IIIIIIIIIIIIIIIIIIIII 37
III +II + ++I
Sbjct: 1 TIIIGLIIAAAVAYVLIRKFF 21
Score = 30.8 bits (70), Expect = 0.11
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 18 IIIIIIIIIIIIIIIIIIIII 38
III +II + ++I
Sbjct: 1 TIIIGLIIAAAVAYVLIRKFF 21
Score = 30.8 bits (70), Expect = 0.11
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 19 IIIIIIIIIIIIIIIIIIIII 39
III +II + ++I
Sbjct: 1 TIIIGLIIAAAVAYVLIRKFF 21
Score = 30.8 bits (70), Expect = 0.11
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 20 IIIIIIIIIIIIIIIIIIIII 40
III +II + ++I
Sbjct: 1 TIIIGLIIAAAVAYVLIRKFF 21
Score = 30.4 bits (69), Expect = 0.15
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 24 IIIIIIIIIIIIIIIIINRI 43
III +II + ++I +
Sbjct: 1 TIIIGLIIAAAVAYVLIRKF 20
>gnl|CDD|211933 TIGR04210, bunya_NSm, bunyavirus nonstructural protein NSm. This
model describes a protein region that is cleaved from a
bunyavirus polyprotein to become the nonstructural
protein NSm (encoded by the M segment). It is flanked
by glycoprotein GP2 and glycoprotein GP1.
Length = 173
Score = 33.5 bits (77), Expect = 0.12
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRI 43
I II I +++II+I++ ++ II+ +
Sbjct: 63 EINSIITICLLLIILILLYLLNKIIHLL 90
Score = 31.9 bits (73), Expect = 0.40
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 8 YHKHHLWFIIIIIIIIIIIIIIIIIIII 35
Y W I+I++I ++I+ I++
Sbjct: 145 YKYKIKWVKNILILLIFLLILKNSTIVV 172
Score = 31.5 bits (72), Expect = 0.52
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 18 IIIIIIIIIIIIIIIIIIIIIIINRI 43
I I II I +++II+I++ ++N+I
Sbjct: 61 ICEINSIITICLLLIILILLYLLNKI 86
Score = 31.1 bits (71), Expect = 0.61
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINR 42
I II I +++II+I++ ++ I
Sbjct: 62 CEINSIITICLLLIILILLYLLNKIIH 88
Score = 30.8 bits (70), Expect = 0.78
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPIH 46
II I +++II+I++ ++ II +++ +
Sbjct: 67 IITICLLLIILILLYLLNKIIHLLLKIYYVF 97
Score = 29.6 bits (67), Expect = 1.9
Identities = 8/41 (19%), Positives = 22/41 (53%)
Query: 1 MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
I + + + I +++II+I++ ++ II +++ I
Sbjct: 54 KINIYEQICEINSIITICLLLIILILLYLLNKIIHLLLKIY 94
Score = 27.7 bits (62), Expect = 7.9
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 7 HYHKHHLWFIIIIIIIIIIIIIIIIII 33
Y + I+I++I ++I+ I++
Sbjct: 146 KYKIKWVKNILILLIFLLILKNSTIVV 172
Score = 27.7 bits (62), Expect = 8.0
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIII 40
+++II+I++ ++ II +++ I +
Sbjct: 69 TICLLLIILILLYLLNKIIHLLLKIYYV 96
>gnl|CDD|216774 pfam01901, DUF70, Protein of unknown function DUF70.
Archaebacterial proteins of unknown function. Members
of this family may be transmembrane proteins.
Length = 331
Score = 34.2 bits (79), Expect = 0.13
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 11/44 (25%)
Query: 2 IQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPI 45
I+ KK I +I++II I+ II ++I+ IP+
Sbjct: 53 IKYKKSE-----------KIGLILLIIGILFFIINLLIVGGIPL 85
Score = 31.5 bits (72), Expect = 0.81
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 4 NKKHYHKHHLWFIIIIIIIIIIIIIIIIIII 34
KK +K +I++II I+ II ++I+
Sbjct: 50 LKKIKYKKSEKIGLILLIIGILFFIINLLIV 80
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 33.7 bits (77), Expect = 0.13
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 1/90 (1%)
Query: 324 LPDPSTPTNNP-PAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKN 382
LP P P V + D +A + +++P E G A P+
Sbjct: 57 LPAVVQVVALPTQPPEGVAQEIQDAGDAAAASVDPQPVAQPPVESTPAGVPVAAQTPKPV 116
Query: 383 GASEPESVSESEAPVTKEGEQKVPVEPTAP 412
+ A T + E K EP A
Sbjct: 117 KPPKQPPAGAVPAKPTPKPEPKPVAEPAAA 146
>gnl|CDD|219521 pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling.
This entry represents the transmembrane region of the
7TM-DISM (7TM Receptors with Diverse Intracellular
Signalling Modules).
Length = 207
Score = 33.4 bits (77), Expect = 0.14
Identities = 3/46 (6%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
Query: 5 KKHYHKHHLWFIIIIIIIIIIII----------IIIIIIIIIIIII 40
KK+ + + + ++++++++ + + ++ ++ I+
Sbjct: 92 KKYLPRLDRLLLGLALLLLLLLLLAPLFPYTLSLRLAQLLALLFIL 137
>gnl|CDD|220342 pfam09685, Tic20, Tic20-like protein. Chloroplast function
requires the import of nuclear encoded proteins from
the cytoplasm across the chloroplast double membrane.
This is accomplished by two protein complexes, the Toc
complex located at the outer membrane and the Tic
complex located at the inner membrane. The Toc complex
recognises specific proteins by a cleavable N-terminal
sequence and is primarily responsible for translocation
through the outer membrane, while the Tic complex
translocates the protein through the inner membrane.
This entry represents Tic20, a core member of the Tic
complex. This protein is deeply embedded in the inner
envelope membrane and is thought to function as a
protein- conducting component of the Tic complex. This
family also includes many proteins of unknown function
from non-synthetic organisms.
Length = 104
Score = 32.1 bits (74), Expect = 0.14
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIII 39
I +I+ I+ I+ I +++I++
Sbjct: 49 LLIYTVILGILSFILGFIGFLLLILL 74
Score = 31.7 bits (73), Expect = 0.17
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIII 40
+ I ++I +I+ I+ I+ I +++
Sbjct: 45 FQISLLIYTVILGILSFILGFIGFLLL 71
Score = 31.4 bits (72), Expect = 0.22
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIII 40
L +I+ I+ I+ I +++I++ I
Sbjct: 49 LLIYTVILGILSFILGFIGFLLLILLWI 76
Score = 29.0 bits (66), Expect = 1.6
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
++I +I+ I+ I+ I +++I+
Sbjct: 48 SLLIYTVILGILSFILGFIGFLLLIL 73
Score = 27.1 bits (61), Expect = 6.1
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIII 38
L FI+ I +++I++ I+ ++ II
Sbjct: 59 LSFILGFIGFLLLILLWILSLVFTII 84
>gnl|CDD|222432 pfam13882, Bravo_FIGEY, C-terminal domain of Fibronectin type
III. This is the very C-terminal region of neural
adhesion molecule L1 proteins that are also known as
Bravo or NrCAM. It lies upstream of the IG and Fn3
domains and has the highly conserved motif FIGEY. The
function is not known.
Length = 118
Score = 32.3 bits (74), Expect = 0.15
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 14 WFIIIIIIIIIIIIIIIIIIII 35
WFI ++ I ++++I++I+ I
Sbjct: 7 WFIGLMCAIALLLLILLIVCFI 28
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 33.7 bits (78), Expect = 0.17
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIII 40
W+ + ++++II II +I I +
Sbjct: 158 GWYGDFLKNLVLVIITNIINVITFIKLR 185
Score = 31.0 bits (71), Expect = 0.96
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 7 HYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIII 39
Y K III I II III + +
Sbjct: 101 KYKKIFSIKNTKIIITFIWIIAIIISTLFYFPL 133
Score = 31.0 bits (71), Expect = 1.1
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISN 51
F+ ++++II II +I I + + + S S
Sbjct: 163 FLKNLVLVIITNIINVITFIKLRKFSKKSSLSSEESK 199
Score = 31.0 bits (71), Expect = 1.1
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINR 42
+ ++++II II +I I + ++
Sbjct: 162 DFLKNLVLVIITNIINVITFIKLRKFSK 189
Score = 30.6 bits (70), Expect = 1.4
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIK 64
I + ++++II II +I ++ S S++ E K+ K
Sbjct: 156 EIGWYGDFLKNLVLVIITNIINVITFIKLRKFSKKSSLS--SEESKKRRK 203
Score = 30.2 bits (69), Expect = 1.8
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
K+ F I III I II III +
Sbjct: 100 FKYKKIFSIKNTKIIITFIWIIAIIISTLFYF 131
Score = 28.7 bits (65), Expect = 5.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIII 36
++++II II +I I +
Sbjct: 163 FLKNLVLVIITNIINVITFIKLRK 186
>gnl|CDD|146748 pfam04276, DUF443, Protein of unknown function (DUF443). Family of
uncharacterized proteins.
Length = 197
Score = 33.0 bits (76), Expect = 0.18
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINR 42
+I III II+I+ ++I+ + IN+
Sbjct: 89 LINIIICIIVILGVLILRLYINK 111
Score = 31.4 bits (72), Expect = 0.63
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 19 IIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNE 58
+I III II+I+ ++I+ + I ++ + I N E
Sbjct: 89 LINIIICIIVILGVLILRLYINKKLKL--KIYNRNKNNKE 126
Score = 29.1 bits (66), Expect = 3.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 16 IIIIIIIIIIIIIIIIIIIII 36
+I III II+I+ ++I+ + I
Sbjct: 89 LINIIICIIVILGVLILRLYI 109
Score = 29.1 bits (66), Expect = 3.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 17 IIIIIIIIIIIIIIIIIIIII 37
+I III II+I+ ++I+ + I
Sbjct: 89 LINIIICIIVILGVLILRLYI 109
Score = 29.1 bits (66), Expect = 3.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 18 IIIIIIIIIIIIIIIIIIIII 38
+I III II+I+ ++I+ + I
Sbjct: 89 LINIIICIIVILGVLILRLYI 109
Score = 29.1 bits (66), Expect = 3.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 15 FIIIIIIIIIIIIIIIIIIII 35
I III II+I+ ++I+ + I
Sbjct: 89 LINIIICIIVILGVLILRLYI 109
>gnl|CDD|233317 TIGR01218, Gpos_tandem_5TM, tandem five-transmembrane protein.
Members of this family of proteins, with average length
of 210, have no invariant residues but five predicted
transmembrane segments. Strangely, most members occur in
groups of consecutive paralogous genes. A striking
example is a set of eleven encoded consecutively,
head-to-tail, in Staphylococcus aureus strain COL.
Length = 208
Score = 33.0 bits (76), Expect = 0.18
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
I I II+ +I I+++ ++ I I N+ +++ + N
Sbjct: 95 IFIKIILFLISILLVYLLRIYINKKNKKKLYNRLPNN 131
Score = 30.3 bits (69), Expect = 1.7
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIII----IIIINRIPIHSN 48
FI II+ +I I+++ ++ I I + NR+P ++
Sbjct: 92 SQSIFIKIILFLISILLVYLLRIYINKKNKKKLYNRLPNNNK 133
Score = 29.9 bits (68), Expect = 2.1
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 5 KKHYHKHHLWFIIIIIIII-------------IIIIIIIIIIIIIIIIINRIPI 45
K+ +I + + I II++I II + ++IN +PI
Sbjct: 144 FKYRIFILFLYIFFLGLSIFLFYLFINNGGENIILVINGIIFLFFFLLINMLPI 197
>gnl|CDD|213900 TIGR04287, exosort_XrtK, exosortase K. Members of this protein
family are exosortase K, a bacterial branch of the
archaeosortase/exosortase family of protein-processing
enzymes (see TIGR04178). All members of the seed
alignment are encoded next to a member of family
TIGR04286, which has the putative processing signal
MSEP-CTERM (see family TIGR04286) at the extreme
C-terminus.
Length = 163
Score = 32.7 bits (75), Expect = 0.18
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 2 IQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIP------IHSNISNI 52
I+N + + K L + +I+ + II+ II I R+ IH I I
Sbjct: 86 IKNFEGFIKKILRIPLSLILAYFLTIIVNTFRIIAAIPFARLEFFHAFLIHEIIGII 142
>gnl|CDD|149215 pfam08006, DUF1700, Protein of unknown function (DUF1700). This
family contains many hypothetical bacterial proteins and
two putative membrane proteins.
Length = 181
Score = 33.0 bits (76), Expect = 0.19
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
FIII+I II+I++++ + II ++++
Sbjct: 93 FIIILIPFIILILLVLSLWIIGLVLL 118
Score = 31.4 bits (72), Expect = 0.57
Identities = 8/26 (30%), Positives = 20/26 (76%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
II+I II+I++++ + II +++++
Sbjct: 94 IIILIPFIILILLVLSLWIIGLVLLL 119
Score = 30.3 bits (69), Expect = 1.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
F III+I II+I++++ + II ++
Sbjct: 91 FNFIIILIPFIILILLVLSLWIIGLV 116
Score = 29.9 bits (68), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIII 40
L III+I II+I++++ + II +
Sbjct: 88 LGLFNFIIILIPFIILILLVLSLWIIGL 115
Score = 29.9 bits (68), Expect = 2.0
Identities = 7/27 (25%), Positives = 19/27 (70%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIII 39
I+I II+I++++ + II +++++
Sbjct: 93 FIIILIPFIILILLVLSLWIIGLVLLL 119
>gnl|CDD|153009 pfam12575, DUF3753, Protein of unknown function (DUF3753). This
family of proteins is found in viruses. Proteins in
this family are approximately 70 amino acids in length.
There is a conserved YLK sequence motif. There are two
completely conserved residues (D and F) that may be
functionally important.
Length = 72
Score = 30.7 bits (70), Expect = 0.21
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIII 38
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
Score = 27.6 bits (62), Expect = 2.4
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIII 40
II+II II ++II+++ + +
Sbjct: 45 NSNWIILIITIIAVVIIVLLTFLYL 69
>gnl|CDD|222574 pfam14159, DUF4308, Domain of unknown function (DUF4308). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is approximately 90 amino acids in length. The domain
is found in several amino-acyl tRNA synthetase enzymes
as well as in isolation in single domain proteins.
Length = 90
Score = 31.0 bits (71), Expect = 0.21
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPI 45
++ + II +I+ + + ++ I+ IP+
Sbjct: 18 PLLGVGAIIAVIVALWLSAAVLDAIDSIPL 47
>gnl|CDD|201515 pfam00934, PE, PE family. This family named after a PE motif near
to the amino terminus of the domain. The PE family of
proteins all contain an amino-terminal region of about
110 amino acids. The carboxyl terminus of this family
are variable and fall into several classes. The largest
class of PE proteins is the highly repetitive PGRS class
which have a high glycine content. The function of these
proteins is uncertain but it has been suggested that
they may be related to antigenic variation of
Mycobacterium tuberculosis.
Length = 94
Score = 31.3 bits (72), Expect = 0.22
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 114 ELALSALSNLKGVGTTLASALLAAATP--EVAPFMADE 149
E +A ++L G+G+ L++A AAA P V ADE
Sbjct: 9 EALAAAAADLAGIGSALSAANAAAAAPTTGVLAAAADE 46
>gnl|CDD|223692 COG0619, CbiQ, ABC-type cobalt transport system, permease
component CbiQ and related transporters [Inorganic ion
transport and metabolism].
Length = 252
Score = 33.1 bits (76), Expect = 0.23
Identities = 7/37 (18%), Positives = 27/37 (72%), Gaps = 4/37 (10%)
Query: 13 LWFIIIIIIIIII----IIIIIIIIIIIIIIINRIPI 45
L ++II++ ++ +++II+++ ++++++ +IP+
Sbjct: 23 LLLFLLIILVFLLNDLVLLLIILLLTLLLVVLAKIPL 59
>gnl|CDD|224735 COG1822, COG1822, Predicted archaeal membrane protein [Function
unknown].
Length = 349
Score = 33.1 bits (76), Expect = 0.23
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
L + I I+ I ++II I +I + I
Sbjct: 68 LLSLLSIFFILGIQLLIIGAIPLIPLAIR 96
Score = 32.7 bits (75), Expect = 0.33
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSN 48
++ ++ ++ I I+ I ++II I +I I N
Sbjct: 64 DIFLLLSLLSIFFILGIQLLIIGAIPLIPLAIRPLLN 100
Score = 28.5 bits (64), Expect = 7.8
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIII 36
++FI+ I ++II I +I + I
Sbjct: 71 LLSIFFILGIQLLIIGAIPLIPLAIRP 97
>gnl|CDD|235617 PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.
Length = 227
Score = 32.8 bits (76), Expect = 0.24
Identities = 4/30 (13%), Positives = 16/30 (53%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIIIII 39
+HHL +++ +++ ++I+++
Sbjct: 2 EHHLIIGFGGFNFDSLLLSVLLGVLILLLF 31
Score = 28.6 bits (65), Expect = 5.5
Identities = 3/33 (9%), Positives = 15/33 (45%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
H I +++ +++ ++I+++ +
Sbjct: 2 EHHLIIGFGGFNFDSLLLSVLLGVLILLLFALV 34
>gnl|CDD|221739 pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 230
Score = 32.7 bits (75), Expect = 0.24
Identities = 2/34 (5%), Positives = 20/34 (58%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSN 48
++++I+ ++ ++++++ +I +++ +
Sbjct: 96 LLVLLILSLLASLLLLLLSLIAGLLLGGSGFSLS 129
Score = 31.6 bits (72), Expect = 0.56
Identities = 3/52 (5%), Positives = 24/52 (46%)
Query: 4 NKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
++ L ++I+ ++ ++++++ +I +++ + + + +
Sbjct: 87 SRGKIFLAKLLVLLILSLLASLLLLLLSLIAGLLLGGSGFSLSLLLGALLLL 138
Score = 31.6 bits (72), Expect = 0.67
Identities = 4/44 (9%), Positives = 20/44 (45%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
+I++I+ +++ ++ +++ + P +S+ +
Sbjct: 9 RTKIFLILLILPLLLALLALLLFGVNGDTGLSPGSLLLSSFSFL 52
Score = 28.9 bits (65), Expect = 4.2
Identities = 4/50 (8%), Positives = 20/50 (40%)
Query: 5 KKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
K ++I+ +++ ++ +++ + + + S+ S +
Sbjct: 5 LKLKRTKIFLILLILPLLLALLALLLFGVNGDTGLSPGSLLLSSFSFLSA 54
Score = 28.5 bits (64), Expect = 6.7
Identities = 7/46 (15%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELP 60
+ I I +++I++ +++ + + ++ P S + I L
Sbjct: 162 SAVAIGIGLLLILLGLLLGSLPLWLL--FPW-SYLPLIVLLSLSLN 204
Score = 27.7 bits (62), Expect = 9.6
Identities = 3/29 (10%), Positives = 15/29 (51%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
++ + + + ++I I+ ++++R
Sbjct: 43 SLLLSSFSFLSALFLPLLIAILASLLVSR 71
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 33.1 bits (76), Expect = 0.25
Identities = 6/36 (16%), Positives = 18/36 (50%)
Query: 7 HYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
I I+ I+ +++ +I+II++ +++
Sbjct: 134 IRGIKESAKIQNILGIVKLLLPLILIILLGLVLALG 169
Score = 31.5 bits (72), Expect = 0.88
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 12/54 (22%)
Query: 13 LWFIIII------------IIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
L +I I+ I+ +++ +I+II++ ++ + N+ W
Sbjct: 126 LIIFALINIRGIKESAKIQNILGIVKLLLPLILIILLGLVLALGGGFNLLPNSW 179
Score = 30.7 bits (70), Expect = 1.4
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 19/46 (41%)
Query: 14 WFIIIIIIIIIIIIIII-------------------IIIIIIIIII 40
W I I I+II +I +++ +I+II+
Sbjct: 116 WLTYGIAIAILIIFALINIRGIKESAKIQNILGIVKLLLPLILIIL 161
>gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family. The
members of this family are integral membrane protein
cytidylyltransferases. The family includes
phosphatidate cytidylyltransferase EC:2.7.7.41 as well
as Sec59 from yeast. Sec59 is a dolichol kinase
EC:2.7.1.108.
Length = 259
Score = 32.7 bits (75), Expect = 0.26
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 12 HLWFIIIIIIII-----IIIIIIIIIIIII---IIIINRIPIHS 47
H+ I+I +I++ I ++++ III+ +I + R+ S
Sbjct: 7 HIVLILIFLILLFLGPLIFLLLVAAIIILALYELIRLLRLKFSS 50
Score = 32.0 bits (73), Expect = 0.55
Identities = 7/31 (22%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 13 LWFIIIIIIIIIIII---IIIIIIIIIIIII 40
++I+I +I++ + I ++++ III+
Sbjct: 6 THIVLILIFLILLFLGPLIFLLLVAAIIILA 36
>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 316
Score = 33.0 bits (75), Expect = 0.27
Identities = 6/52 (11%), Positives = 24/52 (46%)
Query: 1 MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
+ K +++I++ ++++++I++I ++I + S +
Sbjct: 17 IFLLKLLLRLLLYVLNGLLLILLRKLLLLLLILLIAFLLIAYLVKLLLRSLL 68
Score = 31.4 bits (71), Expect = 0.75
Identities = 6/43 (13%), Positives = 25/43 (58%)
Query: 1 MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
+I K + L+ + +++I++ ++++++I++I ++
Sbjct: 16 LIFLLKLLLRLLLYVLNGLLLILLRKLLLLLLILLIAFLLIAY 58
Score = 29.9 bits (67), Expect = 2.5
Identities = 5/34 (14%), Positives = 21/34 (61%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIH 46
L + ++++++I++I ++I ++ ++ R +
Sbjct: 36 LILLRKLLLLLLILLIAFLLIAYLVKLLLRSLLL 69
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated.
Length = 417
Score = 33.0 bits (76), Expect = 0.28
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIII---INRIPIHS----NISNIGWYQNELPKKI 63
I I+ I++++ + I +I II + I +IP+ S S+ + LP ++
Sbjct: 198 ITILSILLLLFLFFITLIGIIFLQEAIRKIPLISAKQLGKSSRLASNSYLPLRL 251
>gnl|CDD|214445 MTH00166, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 160
Score = 31.7 bits (73), Expect = 0.32
Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 24/69 (34%)
Query: 14 WFIIIIIIIII------------------------IIIIIIIIIIIIIIIINRIPIHSNI 49
WF I+ +I + ++I+ ++++++++ + SN
Sbjct: 47 WFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLILFLLMLLLMLNNFIKNSEMSNF 106
Query: 50 SNIGWYQNE 58
+N +
Sbjct: 107 NNNFNFFEN 115
Score = 30.5 bits (70), Expect = 0.82
Identities = 2/38 (5%), Positives = 17/38 (44%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
++I+ ++++++++ I + + ++
Sbjct: 80 LKLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSF 117
Score = 29.8 bits (68), Expect = 1.6
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 18 IIIIIIIIIIIIIIIIIIIIIIINRIPI 45
+I + +II +++ +I+++ I I + P+
Sbjct: 129 LITLFMIIYLLLTLIVVVKITNIFKGPL 156
Score = 29.0 bits (66), Expect = 2.9
Identities = 4/38 (10%), Positives = 16/38 (42%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
++I+ ++++++++ I + N S
Sbjct: 81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFS 118
Score = 29.0 bits (66), Expect = 3.2
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
L+ ++I + +II +++ +I+++ I N
Sbjct: 122 LYNFPTMLITLFMIIYLLLTLIVVVKITN 150
Score = 29.0 bits (66), Expect = 3.3
Identities = 6/44 (13%), Positives = 21/44 (47%)
Query: 18 IIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPK 61
+ ++I+ ++++++++ I + + +N N L K
Sbjct: 78 FSLKLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSK 121
Score = 28.2 bits (64), Expect = 5.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIII 37
I + +II +++ +I+++ I I
Sbjct: 128 MLITLFMIIYLLLTLIVVVKITNI 151
Score = 27.8 bits (63), Expect = 7.0
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIII 38
+I + +II +++ +I+++ I I
Sbjct: 128 MLITLFMIIYLLLTLIVVVKITNI 151
Score = 27.8 bits (63), Expect = 8.0
Identities = 4/38 (10%), Positives = 17/38 (44%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
+I+ ++++++++ I + N N ++
Sbjct: 82 LLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSL 119
>gnl|CDD|219123 pfam06653, Claudin_3, Tight junction protein, Claudin-like. This
is a family of probable membrane tight junction,
Claudin-like, proteins.
Length = 165
Score = 32.0 bits (73), Expect = 0.36
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 5 KKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
KK+ + H+ + +I ++ ++I I+ ++ I+I IN
Sbjct: 83 KKNGYSHYQRKLFFLIALLSLLIAILTVVAFILIAIN 119
>gnl|CDD|204398 pfam10110, GPDPase_memb, Membrane domain of glycerophosphoryl
diester phosphodiesterase. Members of this family
comprise the membrane domain of the prokaryotic enzyme
glycerophosphoryl diester phosphodiesterase.
Length = 149
Score = 31.8 bits (73), Expect = 0.36
Identities = 8/21 (38%), Positives = 18/21 (85%)
Query: 10 KHHLWFIIIIIIIIIIIIIII 30
K +LW I+++++++++II II
Sbjct: 129 KGNLWRILLLLLLLLLIIGII 149
Score = 28.3 bits (64), Expect = 4.5
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 14 WFIIIIIIIIIIIIIIII--IIIIIIIIINRIPIHSNI 49
W I+++++ +II + I I + +II+ +
Sbjct: 84 WLIVLLLLFYLIIFYLGIRLIFTLPLIILEHKSAREAL 121
>gnl|CDD|203782 pfam07853, DUF1648, Protein of unknown function (DUF1648).
Members of this family are hypothetical proteins
expressed by either bacterial or archaeal species. Some
of these are annotated as being transmembrane proteins,
and in fact many of these sequences contain a high
proportion of hydrophobic residues.
Length = 51
Score = 29.4 bits (67), Expect = 0.38
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 22 IIIIIIIIIIIIIIIIIIINRIPIHSNISN 51
++II++ +II I++ + IP H N +
Sbjct: 1 LLIILLTLIIGIVLYPNLPEEIPTHWNANG 30
>gnl|CDD|221454 pfam12175, WSS_VP, White spot syndrome virus structural envelope
protein VP. This family of proteins is found in
viruses. Proteins in this family are approximately 210
amino acids in length. There is a conserved NNT
sequence motif. These proteins are structural envelope
proteins in viruses. This is the beta barrel C terminal
domain. There is a protruding N terminal domain which
completes the proteins. Three of four envelope proteins
in white spot syndrome virus share sequence homology
with each other and are present in this family - VP24,
VP26 and VP28. VP19 is the other major envelope protein
but shares no sequence homology with the other
proteins. These proteins are essential for entry into
cells of the crustacean host.
Length = 206
Score = 31.8 bits (72), Expect = 0.41
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 16/69 (23%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGKDAH 71
H+W + + I+ I+ +I+++I+I++ EL KK+ + KDA+
Sbjct: 2 HMWNLTGVYAAILAILTLILVVIVIVV----------------TNIELNKKLDKKDKDAY 45
Query: 72 LNHEELVQL 80
N +E+++L
Sbjct: 46 PNEDEIIRL 54
>gnl|CDD|222582 pfam14184, YrvL, Regulatory protein YrvL. YrvL prevents
expression and activity of the YrvI sigma factor. It
may function as an anti-sigma factor.
Length = 134
Score = 31.1 bits (71), Expect = 0.41
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
II III + +II+ II + + I +
Sbjct: 4 KFIIFIIIALALIIVFAIIFFVGVGIFSL 32
Score = 28.0 bits (63), Expect = 4.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIII 38
+ I III + +II+ II + + I
Sbjct: 3 EKFIIFIIIALALIIVFAIIFFVGVGI 29
Score = 27.6 bits (62), Expect = 6.5
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIII 37
K III + +II+ II + + I
Sbjct: 2 KEKFIIFIIIALALIIVFAIIFFVGVGI 29
>gnl|CDD|222537 pfam14093, DUF4271, Domain of unknown function (DUF4271). This
family of integral membrane proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
221 and 326 amino acids in length.
Length = 207
Score = 31.8 bits (73), Expect = 0.42
Identities = 6/37 (16%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 13 LWFIIIIIIIIII------IIIIIIIIIIIIIIINRI 43
+ +++ +++++ I +II++II+++ +I
Sbjct: 131 YFGLLLFPLVLLLVYFDSLSFYIAVIILLIILLLGKI 167
Score = 31.4 bits (72), Expect = 0.72
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIII---IIIIINR 42
I +II++II+++ I+++ I +
Sbjct: 147 DSLSFYIAVIILLIILLLGKILLLYKYYKIFFRK 180
Score = 29.9 bits (68), Expect = 2.0
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIII---IIIIIINRIPIH 46
L F I +II++II+++ I+++ I
Sbjct: 147 DSLSFYIAVIILLIILLLGKILLLYKYYKIFFRKLFSFL 185
Score = 28.3 bits (64), Expect = 5.6
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
+I+ +I + + I++ I+ +I +
Sbjct: 82 VQLIVFGLIFGGVFLFILLKYILYRLIGWL 111
>gnl|CDD|224900 COG1989, PulO, Type II secretory pathway, prepilin signal
peptidase PulO and related peptidases [Cell motility
and secretion / Posttranslational modification, protein
turnover, chaperones / Intracellular trafficking and
secretion].
Length = 254
Score = 32.4 bits (74), Expect = 0.42
Identities = 8/66 (12%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISN-------IGWYQNELP--KKIKA 65
+++ ++ ++ +I+ + ++I + +++ I S + +P +
Sbjct: 1 KMVVFLLFLLGLILGSFLNVVIRRLPDKLSISLPRSLCPFCGRGLKLLDL-IPLLSYLLL 59
Query: 66 RGKDAH 71
RGK
Sbjct: 60 RGKCRI 65
>gnl|CDD|221116 pfam11457, DUF3021, Protein of unknown function (DUF3021). This is
a bacterial family of uncharacterized proteins.
Length = 134
Score = 31.1 bits (71), Expect = 0.43
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIII 40
WF + I +++ II I+I +II +I+
Sbjct: 93 WFPLSGIALLLFTIIFILIYLIIWLIL 119
Score = 29.2 bits (66), Expect = 2.3
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIII------IINRI 43
I +++ II I+I +II +I+ I +I
Sbjct: 92 GWFPLSGIALLLFTIIFILIYLIIWLILYLRIKKDIKKI 130
>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane
protein. Models TIGR03110, TIGR03111, and TIGR03112
describe a three-gene system found in several
Gram-positive bacteria, where TIGR03110 (XrtG) is
distantly related to a putative transpeptidase,
exosortase (TIGR02602). This model describes a small
clade that correlates by both gene clustering and
phyletic pattern, although imperfectly, to the three
gene system. Both this narrow clade, and the larger set
of full-length homologous integral membrane proteins,
have an especially well-conserved region near the
C-terminus with an invariant tyrosine. The function is
unknown.
Length = 483
Score = 32.6 bits (75), Expect = 0.44
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIIII-----IINRIPIHSNISNIGWY 55
+H II+I I+++I+ +I++ + +I ++ SN S+I Y
Sbjct: 62 RHKGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNY 112
Score = 31.1 bits (71), Expect = 1.2
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
++++I+II +I+III + + H ++ I
Sbjct: 29 TTLIVLLLILIIFLILIIIYFWKKVKKRYRFLMRHKGVTIIV 70
>gnl|CDD|112384 pfam03563, Bunya_G2, Bunyavirus glycoprotein G2. Bunyavirus has
three genomic segments: small (S), middle-sized (M), and
large (L). The S segment encodes the nucleocapsid and a
non-structural protein. The M segment codes for two
glycoproteins, G1 and G2, and another non-structural
protein (NSm). The L segment codes for an RNA
polymerase. This family contains the G2 glycoprotein
which interacts with the pfam03557 G1 glycoprotein.
Length = 286
Score = 32.0 bits (73), Expect = 0.47
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI-GWYQNELPKKIK 64
+II+ I+ +II I +II+ I IPI I+ + GW N+ KK K
Sbjct: 190 LIILTILTLIIFIFLIILTKTYICYLLIPIFYPIAYLYGWLYNKSCKKCK 239
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and
metabolism].
Length = 541
Score = 32.2 bits (74), Expect = 0.50
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNI 49
WF I ++ II II + IIII I N
Sbjct: 188 WFSSIKVLTIIGFII-LGIIIICGGGPTHGYIGFNY 222
>gnl|CDD|215912 pfam00423, HN, Haemagglutinin-neuraminidase.
Length = 545
Score = 32.3 bits (74), Expect = 0.50
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISN 51
F++I++++ +II+I IIII I I+ I + ++
Sbjct: 2 FVLIVLLLSLIILIAIIIIRIHSATISTGEIQNILNT 38
Score = 30.8 bits (70), Expect = 1.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIII 36
I++++ +II+I IIII I
Sbjct: 2 FVLIVLLLSLIILIAIIIIRIHSA 25
>gnl|CDD|220693 pfam10325, 7TM_GPCR_Srz, Serpentine type 7TM GPCR chemoreceptor
Srz. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of
proteins which are of the serpentine type. Srz is a
solo families amongst the superfamilies of
chemoreceptors. Chemoperception is one of the central
senses of soil nematodes like C. elegans which are
otherwise 'blind' and 'deaf'. The genes encoding Srz
appear to be under strong adaptive evolutionary
pressure.
Length = 266
Score = 31.8 bits (73), Expect = 0.51
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 6 KHYHK-----HHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
H++K + L+ +II +I+I II + +++
Sbjct: 41 NHFYKMVKITYFLFIFLIIFLILIFFFTKNSIIGFLFLLL 80
Score = 30.2 bits (69), Expect = 1.7
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
++F II + ++++ +I+ I+ II
Sbjct: 64 IFFFTKNSIIGFLFLLLLFLILYILYIIT 92
Score = 29.9 bits (68), Expect = 2.5
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
II + ++++ +I+ I+ II + +
Sbjct: 65 FFFTKNSIIGFLFLLLLFLILYILYIITQVFHL 97
>gnl|CDD|219503 pfam07666, MpPF26, M penetrans paralogue family 26. These proteins
include those ascribed to M penetrans paralogue family
26 in.
Length = 133
Score = 30.8 bits (70), Expect = 0.52
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 4 NKKH--YHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
KH + K L I++II I I+ I II I++ I +
Sbjct: 93 KGKHPEFKKVSLHKILLIIGIFILPIFSIIDCFILVSKIKK 133
Score = 30.1 bits (68), Expect = 1.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
+ I++ II+ I I+ II+ I I+ +
Sbjct: 62 VLLILLDDIIVFFYIANFILEIILTIKISLL 92
Score = 28.1 bits (63), Expect = 4.2
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 12 HLWFI-----IIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNE 58
+ I III+ I+ +++ + +II I+I ++ S+ + E
Sbjct: 4 LIKKIKKISWTIIILYILATLLLFVSLIIYIVISSKSNSTSSDYYLESSPLE 55
Score = 27.4 bits (61), Expect = 8.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIII 40
I +++I++ II+ I I+ II
Sbjct: 58 LLIGVLLILLDDIIVFFYIANFILEII 84
>gnl|CDD|222017 pfam13273, DUF4064, Protein of unknown function (DUF4064).
Length = 96
Score = 30.3 bits (69), Expect = 0.53
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 18 IIIIIIIIIIIIIIIIIIIIIIINR 42
+ + I II+ I+ II I++ +
Sbjct: 53 LGTGLGIGAIILSILGIIGSILVKK 77
Score = 29.2 bits (66), Expect = 1.2
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 13 LWFIIIIIIIIIIIIIIIIIII--------IIIII 39
+ I II+ I+ II I++ I+ II
Sbjct: 54 GTGLGIGAIILSILGIIGSILVKKKPKLSGILFII 88
Score = 28.0 bits (63), Expect = 3.2
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIII 37
+ I II+ I+ II I++
Sbjct: 53 LGTGLGIGAIILSILGIIGSILV 75
Score = 27.6 bits (62), Expect = 4.2
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIII 36
+ I II+ I+ II I++
Sbjct: 53 LGTGLGIGAIILSILGIIGSILV 75
Score = 27.6 bits (62), Expect = 4.6
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIII--------IIIII 40
L + I II+ I+ II I++ I+ II
Sbjct: 51 STLGTGLGIGAIILSILGIIGSILVKKKPKLSGILFII 88
>gnl|CDD|165327 PHA03029, PHA03029, hypothetical protein; Provisional.
Length = 92
Score = 30.2 bits (68), Expect = 0.56
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRI--PIHSNISN--IGWY 55
+ II III II+I+ II II ++ IN+I I NI + G Y
Sbjct: 8 FLIIAIIIYIILILAIIGIIWGFLLSINKIRAAIDQNIRSRRKGLY 53
>gnl|CDD|218678 pfam05656, DUF805, Protein of unknown function (DUF805). This
family consists of several bacterial proteins of
unknown function.
Length = 112
Score = 30.3 bits (69), Expect = 0.57
Identities = 5/29 (17%), Positives = 18/29 (62%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
WF++ I+I ++++I+ ++ +++
Sbjct: 15 WWFVLFNILITLVLLILAALLSGSSSLLS 43
>gnl|CDD|223076 PHA03399, pif3, per os infectivity factor 3; Provisional.
Length = 200
Score = 31.4 bits (72), Expect = 0.57
Identities = 4/26 (15%), Positives = 17/26 (65%)
Query: 18 IIIIIIIIIIIIIIIIIIIIIIINRI 43
+I +++++II++I+ + + ++
Sbjct: 1 MIWGLLVLLIILLIVYYYTLKFVQQL 26
Score = 29.1 bits (66), Expect = 3.8
Identities = 3/21 (14%), Positives = 12/21 (57%)
Query: 13 LWFIIIIIIIIIIIIIIIIII 33
++++II++I+ + +
Sbjct: 3 WGLLVLLIILLIVYYYTLKFV 23
Score = 28.7 bits (65), Expect = 4.5
Identities = 4/22 (18%), Positives = 15/22 (68%)
Query: 13 LWFIIIIIIIIIIIIIIIIIII 34
+W +++++II++I+ + +
Sbjct: 2 IWGLLVLLIILLIVYYYTLKFV 23
Score = 28.7 bits (65), Expect = 5.2
Identities = 4/23 (17%), Positives = 15/23 (65%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIII 38
+I +++++II++I+ + +
Sbjct: 1 MIWGLLVLLIILLIVYYYTLKFV 23
Score = 28.7 bits (65), Expect = 5.2
Identities = 4/23 (17%), Positives = 15/23 (65%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIII 39
+I +++++II++I+ + +
Sbjct: 1 MIWGLLVLLIILLIVYYYTLKFV 23
Score = 27.9 bits (63), Expect = 7.6
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINR 42
I +++++II++I+ + + +N
Sbjct: 2 IWGLLVLLIILLIVYYYTLKFVQQLNL 28
>gnl|CDD|221617 pfam12517, DUF3720, Protein of unknown function (DUF3720). This
domain family is found in eukaryotes, and is
approximately 100 amino acids in length. There are two
completely conserved A residues that may be functionally
important.
Length = 98
Score = 30.1 bits (68), Expect = 0.58
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 353 PPLKKTKLSEPENEVANNGESSEAAKPEKNGAS---EPESVSESEAPVTKEGEQKVPV 407
PL+ TK S P+N++ N E S A G + T E K+ V
Sbjct: 17 DPLEDTKESSPDNKLGANTEGSGAPGLGGGGVAGQPAAALPPGPGGSGTGGQEGKLEV 74
>gnl|CDD|146581 pfam04021, Class_IIIsignal, Class III signal peptide. This
family of archaeal proteins contains. an amino terminal
motif QXSXEXXXL that has been suggested to be part of a
class III signal sequence. With the Q being the +1
residue of the signal peptidase cleavage site. Two
members of this family are cleaved by a type IV
pilin-like signal peptidase.
Length = 28
Score = 28.0 bits (64), Expect = 0.59
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 15 FIIIIIIIIIIIIIIIIIII 34
F+++I+ ++++ II I
Sbjct: 9 FLLLILAVLVVAIIAIYYYT 28
Score = 26.5 bits (60), Expect = 2.5
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 16 IIIIIIIIIIIIIIIIIIII 35
+++I+ ++++ II I
Sbjct: 9 FLLLILAVLVVAIIAIYYYT 28
Score = 26.5 bits (60), Expect = 2.5
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 17 IIIIIIIIIIIIIIIIIIII 36
+++I+ ++++ II I
Sbjct: 9 FLLLILAVLVVAIIAIYYYT 28
Score = 26.5 bits (60), Expect = 2.5
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 18 IIIIIIIIIIIIIIIIIIII 37
+++I+ ++++ II I
Sbjct: 9 FLLLILAVLVVAIIAIYYYT 28
Score = 26.5 bits (60), Expect = 2.5
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 19 IIIIIIIIIIIIIIIIIIII 38
+++I+ ++++ II I
Sbjct: 9 FLLLILAVLVVAIIAIYYYT 28
Score = 26.5 bits (60), Expect = 2.5
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 20 IIIIIIIIIIIIIIIIIIII 39
+++I+ ++++ II I
Sbjct: 9 FLLLILAVLVVAIIAIYYYT 28
Score = 26.5 bits (60), Expect = 2.5
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 21 IIIIIIIIIIIIIIIIIIII 40
+++I+ ++++ II I
Sbjct: 9 FLLLILAVLVVAIIAIYYYT 28
>gnl|CDD|213562 TIGR00810, secG, protein translocase, SecG subunit. This family
of proteins forms a complex with SecY and SecE. SecA
then recruits the SecYEG complex to form an active
protein translocation channel [Protein fate, Protein
and peptide secretion and trafficking].
Length = 73
Score = 29.4 bits (67), Expect = 0.60
Identities = 4/23 (17%), Positives = 16/23 (69%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINR 42
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLLQS 23
Score = 29.0 bits (66), Expect = 0.79
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 16 IIIIIIIIIIIIIIIIIIIII 36
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 29.0 bits (66), Expect = 0.79
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 17 IIIIIIIIIIIIIIIIIIIII 37
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 29.0 bits (66), Expect = 0.79
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 18 IIIIIIIIIIIIIIIIIIIII 38
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 29.0 bits (66), Expect = 0.79
Identities = 4/21 (19%), Positives = 16/21 (76%)
Query: 19 IIIIIIIIIIIIIIIIIIIII 39
+++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
Score = 29.0 bits (66), Expect = 0.92
Identities = 4/21 (19%), Positives = 17/21 (80%)
Query: 15 FIIIIIIIIIIIIIIIIIIII 35
+ +++I+ II+ +++I ++++
Sbjct: 1 YTVLLILHIIVAVLLIGLVLL 21
>gnl|CDD|216594 pfam01594, UPF0118, Domain of unknown function DUF20. This
transmembrane region is found in putative permeases and
predicted transmembrane proteins it has no known
function. It is not clear what source suggested that
these proteins may be permeases and this information
should be treated with caution.
Length = 327
Score = 31.8 bits (73), Expect = 0.63
Identities = 7/71 (9%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELP---KKIKARGKDA 70
I++++++ ++ ++++ +++I ++I ++ I ++ Y + L ++
Sbjct: 50 SLAILLVLLLFLVALVLLGLLLIPLLIIQLT--QLIKSLPQYIDSLLNWLNELPELLPFL 107
Query: 71 HLNHEELVQLM 81
++L +
Sbjct: 108 ENVIQQLDSSL 118
Score = 29.9 bits (68), Expect = 2.7
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 14 WFIIIIIIIIIII---IIIIIIIIIIIIIINRIP 44
I+I I I ++ I +I++I +++I +I
Sbjct: 240 VIILIPIAIYALLTGGIWAGLIVLIGVLLIQQIE 273
>gnl|CDD|217759 pfam03845, Spore_permease, Spore germination protein.
Length = 320
Score = 31.8 bits (73), Expect = 0.65
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPI 45
F II I++II++ I+I + I N P+
Sbjct: 139 FCFIIPILLIILLFILIFSLKQAHIKNLRPV 169
Score = 29.1 bits (66), Expect = 5.0
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 22/63 (34%)
Query: 8 YHKHHLWFIIIIIIII------------------IIIIIIIIIIIIIIIIINRIPIHSNI 49
W II+ ++++ II I++II++ I+I + ++I
Sbjct: 108 LPDTPTWIIILTLLLVSIYLISKGIEVLAREFCFIIPILLIILLFILIFSLK----QAHI 163
Query: 50 SNI 52
N+
Sbjct: 164 KNL 166
Score = 28.0 bits (63), Expect = 9.4
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 13 LWFIIIII--IIIIIIIIIIIIIIIIIIIINRIPIHSN 48
L+ + I + +++I+I II II+ IP + N
Sbjct: 281 LYAASLGISRLFKKKNKSLLVILIGIIFIISSIPKNPN 318
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 31.7 bits (73), Expect = 0.68
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 6 KHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
+ Y+ + + IIIII +I + +I II++
Sbjct: 106 ERYYSKGVRILSAIIIIIFLIGYLAAQLIGGGIILS 141
Score = 29.4 bits (67), Expect = 3.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 5 KKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIII 39
+++Y K IIIII +I + +I II+
Sbjct: 106 ERYYSKGVRILSAIIIIIFLIGYLAAQLIGGGIIL 140
Score = 29.0 bits (66), Expect = 4.7
Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 13 LWFIIIIIIIIIII-------------------IIIIIIIIIIIIIINRI 43
W II+ +I+I+ +++I +I++ ++++
Sbjct: 148 YWTGAIILAVIVILYTVFGGLRAVAWTDVIQGVLMLIGVILLAFFALSKV 197
Score = 29.0 bits (66), Expect = 5.9
Identities = 2/27 (7%), Positives = 15/27 (55%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIII 40
+++ ++ +++ + II+++ +
Sbjct: 360 IATVVVGVLALLLALFPPSIILLLSLA 386
Score = 28.3 bits (64), Expect = 9.2
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 21 IIIIIIIIIIIIIIIIIIIINR 42
I +II+I+ ++I++ I + +
Sbjct: 1 IDLIIVIVYLLILLGIGLYSRK 22
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA.
During the bacterial cell cycle, the tubulin-like
cell-division protein FtsZ polymerises into a ring
structure that establishes the location of the nascent
division site. EzrA modulates the frequency and
position of FtsZ ring formation.
Length = 559
Score = 31.8 bits (73), Expect = 0.71
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 22 IIIIIIIIIIIIIIIIIIINR 42
+II II+I+I+ + + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFLRK 21
Score = 29.8 bits (68), Expect = 3.6
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 21 IIIIIIIIIIIIIIIIIIIINRI 43
+II II+I+I+ + + +I
Sbjct: 1 LIIGIIVIVIVAYLAGYFLRKKI 23
Score = 29.5 bits (67), Expect = 4.6
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 16 IIIIIIIIIIIIIIIIIII 34
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 29.5 bits (67), Expect = 4.6
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 17 IIIIIIIIIIIIIIIIIII 35
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 29.5 bits (67), Expect = 4.6
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 18 IIIIIIIIIIIIIIIIIII 36
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 29.5 bits (67), Expect = 4.6
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 19 IIIIIIIIIIIIIIIIIII 37
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 29.5 bits (67), Expect = 4.6
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 20 IIIIIIIIIIIIIIIIIII 38
+II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 29.1 bits (66), Expect = 5.3
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 15 FIIIIIIIIIIIIIIIIII 33
II II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
Score = 28.7 bits (65), Expect = 7.8
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 14 WFIIIIIIIIIIIIIIIII 32
I II+I+I+ + +
Sbjct: 1 LIIGIIVIVIVAYLAGYFL 19
>gnl|CDD|221569 pfam12420, DUF3671, Protein of unknown function. This domain
family is found in eukaryotes, and is typically between
96 and 116 amino acids in length.
Length = 106
Score = 30.0 bits (68), Expect = 0.72
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIII 34
+ ++FII+ I++++II I+I +I
Sbjct: 80 NGIFFIILATIVLLVIIYILIKVI 103
Score = 28.4 bits (64), Expect = 2.8
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIII 40
I+ + I II+ I++++II I
Sbjct: 72 IPYILPGLNGIFFIILATIVLLVIIYI 98
Score = 28.4 bits (64), Expect = 2.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 15 FIIIIIIIIIIIIIIIIIIII 35
F II+ I++++II I+I +I
Sbjct: 83 FFIILATIVLLVIIYILIKVI 103
Score = 27.7 bits (62), Expect = 4.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIII 38
I II+ I++++II I+I +I
Sbjct: 81 GIFFIILATIVLLVIIYILIKVI 103
Score = 27.7 bits (62), Expect = 4.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIII 39
I II+ I++++II I+I +I
Sbjct: 81 GIFFIILATIVLLVIIYILIKVI 103
Score = 27.7 bits (62), Expect = 4.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 18 IIIIIIIIIIIIIIIIIIIIIII 40
I II+ I++++II I+I +I
Sbjct: 81 GIFFIILATIVLLVIIYILIKVI 103
Score = 27.3 bits (61), Expect = 6.0
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIII 40
+ + I II+ I++++II I+I
Sbjct: 76 LPGLNGIFFIILATIVLLVIIYILI 100
Score = 26.9 bits (60), Expect = 8.4
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIII 40
I+ + I II+ I++++II I+
Sbjct: 75 ILPGLNGIFFIILATIVLLVIIYIL 99
>gnl|CDD|201180 pfam00361, Oxidored_q1, NADH-Ubiquinone/plastoquinone (complex I),
various chains. This family is part of complex I which
catalyzes the transfer of two electrons from NADH to
ubiquinone in a reaction that is associated with proton
translocation across the membrane.
Length = 270
Score = 31.4 bits (72), Expect = 0.72
Identities = 9/51 (17%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIII----------INRIPIHSNISNIGWY 55
+ +I I++I+ I+ +++ I ++ +S+IS++G+
Sbjct: 132 LSNLFSSSNLISYILLILGILSMLLGSLGALNQTDIKKLLAYSSISHMGFM 182
>gnl|CDD|165187 PHA02845, PHA02845, hypothetical protein; Provisional.
Length = 91
Score = 29.7 bits (67), Expect = 0.73
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
HH F I + I +I++II++I ++I I+ R
Sbjct: 33 NHHYLFRPFIRLTIDLILLIIVMIFLMIRILKR 65
Score = 27.4 bits (61), Expect = 4.9
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 2 IQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIII 39
I+N HY L+ I + I +I++II++I ++I I+
Sbjct: 30 IENNHHY----LFRPFIRLTIDLILLIIVMIFLMIRIL 63
>gnl|CDD|240242 PTZ00046, PTZ00046, rifin; Provisional.
Length = 358
Score = 31.8 bits (73), Expect = 0.74
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINR 42
II I+ I++I++I++II +I R
Sbjct: 317 IIASIVAIVVIVLIMVIIYLILR 339
Score = 31.1 bits (71), Expect = 1.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 16 IIIIIIIIIIIIIIIIIIIII 36
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.1 bits (71), Expect = 1.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 17 IIIIIIIIIIIIIIIIIIIII 37
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.1 bits (71), Expect = 1.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 18 IIIIIIIIIIIIIIIIIIIII 38
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
Score = 31.1 bits (71), Expect = 1.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 19 IIIIIIIIIIIIIIIIIIIII 39
II I+ I++I++I++II +I
Sbjct: 317 IIASIVAIVVIVLIMVIIYLI 337
>gnl|CDD|201496 pfam00895, ATP-synt_8, ATP synthase protein 8.
Length = 54
Score = 28.8 bits (65), Expect = 0.74
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 14 WFIIIIIIIIIIIIIIIIII 33
WF+I + + ++III + I
Sbjct: 9 WFLIFLSSWLTLLIIIQLKI 28
>gnl|CDD|223843 COG0772, FtsW, Bacterial cell division membrane protein [Cell
division and chromosome partitioning].
Length = 381
Score = 31.8 bits (73), Expect = 0.74
Identities = 7/41 (17%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 13 LWFIIIIIIII-------IIIIIIIIIIIIIIIIINRIPIH 46
L F I++ ++ I+ ++++ + +I+I I +
Sbjct: 174 LLFAILLFMLFLAGLRWRWILALLVLALAGFVILILFIFLK 214
Score = 30.3 bits (69), Expect = 2.2
Identities = 5/30 (16%), Positives = 16/30 (53%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
W + ++++ + +I+I+ I + R+
Sbjct: 192 WILALLVLALAGFVILILFIFLKPYQKKRV 221
Score = 30.3 bits (69), Expect = 2.4
Identities = 8/55 (14%), Positives = 26/55 (47%), Gaps = 14/55 (25%)
Query: 7 HYHKHHL-WFIIIIIIIIIII-------------IIIIIIIIIIIIIINRIPIHS 47
++ L W ++ +I+ +++I I++ +II++++++ S
Sbjct: 48 YFLIRQLVWLLLGLILALLVILRLPLRFLRKRSFAILLYVIILLLLVLVLFFGSS 102
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters, SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 481
Score = 31.8 bits (73), Expect = 0.78
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 19/55 (34%)
Query: 13 LWFIIIIIIIIIII-------------------IIIIIIIIIIIIIINRIPIHSN 48
LW+ I++I +I+II II + I + ++ +P+
Sbjct: 147 LWYTILLIGVIVIIYTVLGGIKAVIWTDVIQMVIIFAGLFIALGFLLKGLPVGFT 201
>gnl|CDD|223937 COG1005, NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H)
[Energy production and conversion].
Length = 332
Score = 31.5 bits (72), Expect = 0.79
Identities = 5/32 (15%), Positives = 16/32 (50%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
++ I+ I++I+I +++ ++ R
Sbjct: 6 DMDIPLLFTILKIVVILIGLLVAGAFLVWFER 37
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 30.9 bits (70), Expect = 0.80
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Query: 325 PDPSTPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGA 384
+P+T + VE G + PP P A ++ P K A
Sbjct: 103 SEPATENKPAEVTTPVEPMGLPET----PPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRA 158
Query: 385 SEPESVSESEAPVTKEGEQKVPVEPTA-PVPVESKTET 421
P +++ T+ K + A P P KT T
Sbjct: 159 KSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTAT 196
>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane].
Length = 424
Score = 31.7 bits (72), Expect = 0.84
Identities = 9/79 (11%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKI-KARGKDAH 71
+I+++ + ++++++ ++++ ++ + + I+ +G E + + G D+
Sbjct: 219 ALLALILLLALFLVLLLLRRVLLLGLLAALLAL-ILIALVGIELFEPLELLLARLGTDSS 277
Query: 72 LNHEELVQLMKWKQTLNYL 90
L + W+ L +
Sbjct: 278 LTGRLDI----WEAALEAI 292
>gnl|CDD|220221 pfam09402, MSC, Man1-Src1p-C-terminal domain. MAN1 is an integral
protein of the inner nuclear membrane which binds to
chromatin associated proteins and plays a role in
nuclear organisation. The C terminal nucleoplasmic
region forms a DNA binding winged helix and binds to
Smad. This C-terminal tail is also found in S.
cerevisiae and is thought to consist of three conserved
helices followed by two downstream strands.
Length = 326
Score = 31.3 bits (71), Expect = 0.84
Identities = 5/31 (16%), Positives = 17/31 (54%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
L+ ++++ +II+++++ I I +
Sbjct: 204 RLFLKRYRLLLLGLIILLLVVFYIRYRIKKK 234
Score = 30.5 bits (69), Expect = 1.6
Identities = 5/29 (17%), Positives = 17/29 (58%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
+ + ++++ +II+++++ I RI
Sbjct: 203 VRLFLKRYRLLLLGLIILLLVVFYIRYRI 231
>gnl|CDD|200429 TIGR04178, exo_archaeo, exosortase/archaeosortase family protein.
This model represents the most conserved region of the
multitransmembrane protein family of exosortases and
archaeosortases. The region includes nearly invariant
motifs at the ends of three predicted transmembrane
helices on the extracytoplasmic face: a Cys (often
Cys-Xaa-Gly), Asn-Xaa-Xaa-Arg, and His. This model is
much broader than the bacterial exosortase model
(TIGR02602), and has in intended scope similar to (or
broader than) pfam09721.
Length = 97
Score = 29.5 bits (67), Expect = 0.85
Identities = 6/29 (20%), Positives = 18/29 (62%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIIII 38
+ L +++ + II + I+ I+++I++
Sbjct: 32 RRKLLLLLLGVPIIYLANILRIVLLILLG 60
>gnl|CDD|220687 pfam10316, 7TM_GPCR_Srbc, Serpentine type 7TM GPCR chemoreceptor
Srbc. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srbc is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 272
Score = 31.3 bits (72), Expect = 0.88
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 8 YHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
YH + II+I+ I + ++ N I I N N G
Sbjct: 115 YHNYRPKIPNFIILILAISYGLFEQYVLFGFCDNVIDIPLNCDNFG 160
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 31.0 bits (70), Expect = 0.88
Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 13/123 (10%)
Query: 284 QSLPSEKSLDDGSIGNNHTDDVTNDSVMTLG------AESDTNTNDLPDPSTPTNNPPAP 337
Q +E G+ +D+ ++ D P ++
Sbjct: 65 QQPVTEDGAAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATD 124
Query: 338 SQVEMDGADDNASAEP-------PLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESV 390
A A P P + P +GE + P+ + A ++
Sbjct: 125 EAATDPPATAAARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGTLQAA 184
Query: 391 SES 393
ES
Sbjct: 185 RES 187
Score = 29.5 bits (66), Expect = 2.9
Identities = 24/121 (19%), Positives = 35/121 (28%), Gaps = 7/121 (5%)
Query: 238 NGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSI 297
G SD + + +P A S P E TS+ E + D +
Sbjct: 78 AGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSA----TDEAATDPPA- 132
Query: 298 GNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDGADDNASAEPPLKK 357
D T D T + + PP PS + A +A L +
Sbjct: 133 TAAARDGPTPDP--TAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGTLQAARESLVE 190
Query: 358 T 358
T
Sbjct: 191 T 191
>gnl|CDD|221501 pfam12273, RCR, Chitin synthesis regulation, resistance to Congo
red. RCR proteins are ER membrane proteins that
regulate chitin deposition in fungal cell walls.
Although chitin, a linear polymer of beta-1,4-linked
N-acetylglucosamine, constitutes only 2% of the cell
wall it plays a vital role in the overall protection of
the cell wall against stress, noxious chemicals and
osmotic pressure changes. Congo red is a cell
wall-disrupting benzidine-type dye extensively used in
many cell wall mutant studies that specifically targets
chitin in yeast cells and inhibits growth. RCR proteins
render the yeasts resistant to Congo red by diminishing
the content of chitin in the cell wall. RCR proteins
are probably regulating chitin synthase III interact
directly with ubiquitin ligase Rsp5, and the VPEY motif
is necessary for this, via interaction with the WW
domains of Rsp5.
Length = 124
Score = 30.1 bits (68), Expect = 0.90
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 21 IIIIIIIIIIIIIIIIIIIINR 42
++ I II ++I+ + INR
Sbjct: 3 VLFAIFIIALLILFFLTARINR 24
Score = 28.6 bits (64), Expect = 2.7
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 14 WFIIIIIIIIIIIIIIIIIII 34
W + I II ++I+ + I
Sbjct: 2 WVLFAIFIIALLILFFLTARI 22
>gnl|CDD|222119 pfam13425, O-antigen_lig, O-antigen ligase like membrane protein.
Length = 136
Score = 30.4 bits (69), Expect = 0.90
Identities = 5/39 (12%), Positives = 20/39 (51%), Gaps = 9/39 (23%)
Query: 14 WFIIIIIIIIII---------IIIIIIIIIIIIIIINRI 43
++I +++++ I++ I+ +I ++++ R
Sbjct: 24 LLALLIALLLLLLLKKRRKLLILLAILGVIALLVLSGRF 62
Score = 30.0 bits (68), Expect = 1.2
Identities = 7/39 (17%), Positives = 20/39 (51%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISN 51
L ++I++ I+ +I ++++ +RI S+ +
Sbjct: 35 LLLKKRRKLLILLAILGVIALLVLSGRFSRIIAGSDERD 73
Score = 30.0 bits (68), Expect = 1.2
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 8 YHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
K I++ I+ +I ++++ II +
Sbjct: 37 LKKRRKLLILLAILGVIALLVLSGRFSRIIAGSD 70
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED
MODIFIER (SUMO); Provisional.
Length = 490
Score = 31.4 bits (71), Expect = 0.91
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 396 PVTKEGEQKVPVEPTAPVPVESKTETLRVMLINNSSSLL 434
P KE ++VP EP P+ E +TE R NN +L
Sbjct: 242 PKPKEPVEEVPREPFIPLTREEETEVKRAFSANNRRKVL 280
>gnl|CDD|148722 pfam07280, DUF1443, Protein of unknown function (DUF1443). This
family consists of several Baculovirus proteins of
around 55 residues in length. The function of this
family is unknown.
Length = 43
Score = 27.9 bits (63), Expect = 0.93
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 22 IIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQ-NELPK 61
++II+I ++ I I+ I+ +NR + + +YQ +P+
Sbjct: 1 VLIIVIFLVCIYILYILKLNRGQVRRLL----YYQYKYIPE 37
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 31.7 bits (72), Expect = 0.93
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
L +I I++++I++I+++I II R
Sbjct: 10 LLMLIAIVVVVILVILVLIFFGKRFYIIAR 39
>gnl|CDD|226122 COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases
[Carbohydrate transport and metabolism].
Length = 343
Score = 31.2 bits (71), Expect = 0.94
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQ--NELPKKIKARG 67
L + + I++I+ +III ++ Y EL +K+ +G
Sbjct: 291 ILNLSTSYLAFLPILLIVSLIIIAVLS--------RVFLKTLLYLPVIELRRKVLLKG 340
>gnl|CDD|149146 pfam07907, YibE_F, YibE/F-like protein. The sequences featured
in this family are similar to two proteins expressed by
Lactococcus lactis, YibE and YibF. Most of the members
of this family are annotated as being putative membrane
proteins, and in fact the sequences contain a high
proportion of hydrophobic residues.
Length = 244
Score = 30.9 bits (71), Expect = 0.96
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 13 LWFIIIIII------IIIIIIIIIIIIIIIIIIIN 41
L+ ++I II I++ II+ III + + ++N
Sbjct: 36 LFLVLIPIILAGFNPILVTIILAIIITAVTLFLVN 70
Score = 30.1 bits (69), Expect = 1.7
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 8/34 (23%)
Query: 15 FIIIIIIII--------IIIIIIIIIIIIIIIII 40
F+++ +++I I++ II+ III + +
Sbjct: 33 FVLLFLVLIPIILAGFNPILVTIILAIIITAVTL 66
Score = 28.9 bits (66), Expect = 4.9
Identities = 7/35 (20%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 14 WFIIIIIII--------IIIIIIIIIIIIIIIIII 40
+ ++ +++I I++ II+ III + +
Sbjct: 33 FVLLFLVLIPIILAGFNPILVTIILAIIITAVTLF 67
>gnl|CDD|222043 pfam13314, DUF4083, Domain of unknown function (DUF4083). This
is a family of very short, approximately 60 residue,
proteins from Firmicutes, that are all putatively
annotated as being MutT/Nudix. However, the
characteristic Nudix motif of GX(5)EX(7)REUXEE is
absent.
Length = 58
Score = 28.5 bits (64), Expect = 0.97
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINRIPIHSNISN 51
I +I++II+I++I + I R+ S
Sbjct: 7 IYLIVVIILIVLIGASFTLFIRRLLHTSAAKK 38
Score = 26.2 bits (58), Expect = 6.9
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
+I++II+I++I + I ++
Sbjct: 6 SIYLIVVIILIVLIGASFTLFIRRLLHT 33
>gnl|CDD|224537 COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases,
subunit 2 [Energy production and conversion].
Length = 247
Score = 31.2 bits (71), Expect = 0.97
Identities = 4/26 (15%), Positives = 17/26 (65%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIII 39
II+ +++++I++ +I++++
Sbjct: 32 DLIILSTLLMLVIVLPVIVLLVYFAW 57
Score = 29.3 bits (66), Expect = 3.7
Identities = 4/30 (13%), Positives = 18/30 (60%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
+II+ +++++I++ +I++++
Sbjct: 28 AEQRDLIILSTLLMLVIVLPVIVLLVYFAW 57
Score = 28.9 bits (65), Expect = 4.6
Identities = 3/31 (9%), Positives = 17/31 (54%)
Query: 7 HYHKHHLWFIIIIIIIIIIIIIIIIIIIIII 37
+ L + +++++I++ +I++++
Sbjct: 27 AAEQRDLIILSTLLMLVIVLPVIVLLVYFAW 57
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases
[Amino acid transport and metabolism].
Length = 462
Score = 31.4 bits (72), Expect = 0.97
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIH-SNISNIG 53
WF +I + II I++ I+++ SN+ + G
Sbjct: 154 FWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHG 195
>gnl|CDD|147775 pfam05803, Chordopox_L2, Chordopoxvirus L2 protein. This family
consists of several Chordopoxvirus L2 proteins.
Length = 87
Score = 29.2 bits (66), Expect = 0.99
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
+ H + ++I ++I++I+I I ++ R
Sbjct: 31 KQQHFILRPFLRLLIDVLILVIVINDFTIRLLKR 64
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 30.7 bits (70), Expect = 1.0
Identities = 5/37 (13%), Positives = 18/37 (48%)
Query: 4 NKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
++ + ++ I++ + I ++ II ++I+
Sbjct: 83 ERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIV 119
>gnl|CDD|233790 TIGR02227, sigpep_I_bact, signal peptidase I, bacterial type.
This model represents signal peptidase I from most
bacteria. Eukaryotic sequences are likely organellar.
Several bacteria have multiple paralogs, but these
represent isozymes of signal peptidase I. Virtually all
known bacteria may be presumed to A related model finds
a simlar protein in many archaea and a few bacteria, as
well as a microsomal (endoplasmic reticulum) protein in
eukaryotes [Protein fate, Protein and peptide secretion
and trafficking].
Length = 163
Score = 30.3 bits (69), Expect = 1.0
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 19 IIIIIIIIIIIIIIIIIIIIIINRIPIHS 47
+I+ ++I I++ ++I + ++P S
Sbjct: 1 LILSLLIAILLALLIRTFVFFPYKVPGGS 29
Score = 28.7 bits (65), Expect = 3.7
Identities = 4/26 (15%), Positives = 14/26 (53%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIIN 41
+I+ ++I I++ ++I + +
Sbjct: 1 LILSLLIAILLALLIRTFVFFPYKVP 26
Score = 28.7 bits (65), Expect = 4.2
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIII 39
I+ ++I I++ ++I + +
Sbjct: 1 LILSLLIAILLALLIRTFVFFPYKV 25
Score = 28.0 bits (63), Expect = 6.3
Identities = 3/25 (12%), Positives = 12/25 (48%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIII 38
+ ++I I++ ++I + +
Sbjct: 1 LILSLLIAILLALLIRTFVFFPYKV 25
>gnl|CDD|214438 MTH00154, COX2, cytochrome c oxidase subunit II; Provisional.
Length = 227
Score = 31.0 bits (71), Expect = 1.0
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
++I+I+I I++ ++I ++ NR + I W
Sbjct: 26 HTMMILIMITILVGYMMISLLFNKFTNRFLLEGQEIEIIW 65
>gnl|CDD|218933 pfam06195, DUF996, Protein of unknown function (DUF996). Family
of uncharacterized bacterial and archaeal proteins.
Length = 139
Score = 30.3 bits (69), Expect = 1.0
Identities = 5/42 (11%), Positives = 19/42 (45%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
FI+ +I ++ I++++ + ++ + + + I
Sbjct: 33 SFILALIGSVVFIVLLVALAGVLPVKGSLGAAANPYLFISPL 74
Score = 27.2 bits (61), Expect = 8.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIII 37
I I++II++ +III++ I
Sbjct: 117 LYWIGAILLIILVGLIIILVGWI 139
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 31.7 bits (72), Expect = 1.0
Identities = 18/158 (11%), Positives = 39/158 (24%), Gaps = 12/158 (7%)
Query: 263 DESTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTN 322
+ + V + + P + + + + S + + + +
Sbjct: 49 ELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESR--STPTWSLSTLAPASPAREG-S 105
Query: 323 DLPDPSTPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKN 382
P + + PP L+ P +S A
Sbjct: 106 PTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLR------PVGSPGPPPAASPPAAGASP 159
Query: 383 GASEPESVSESE-APVTKEGEQKV--PVEPTAPVPVES 417
A ++ S + A E+ P P A P +
Sbjct: 160 AAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPST 197
>gnl|CDD|236502 PRK09410, ulaA, PTS system ascorbate-specific transporter subunit
IIC; Reviewed.
Length = 452
Score = 31.4 bits (72), Expect = 1.0
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 13 LWFIIIIIIIII--IIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
I++ + + II III+I + ++++ R +
Sbjct: 408 APGILLGFLAKLFGIIGIIIVIALALLVLAGRALRKKEDAEKQLA 452
Score = 28.3 bits (64), Expect = 9.5
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIII 36
L+ II III+I + ++++ +
Sbjct: 418 KLFGIIGIIIVIALALLVLAGRALR 442
>gnl|CDD|217202 pfam02723, NS3_envE, Non-structural protein NS3/Small envelope
protein E. This is a family of small non-structural
proteins, well conserved among Coronavirus strains.
This protein is also found in murine hepatitis virus as
small envelope protein E.
Length = 82
Score = 28.9 bits (65), Expect = 1.0
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
++ II+ +++ II +++ I + +I
Sbjct: 11 GLVVNIILWLLVCIIFLLVSIAFLTLIK 38
>gnl|CDD|220689 pfam10318, 7TM_GPCR_Srh, Serpentine type 7TM GPCR chemoreceptor
Srh. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srh is part of the Str
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 302
Score = 31.0 bits (71), Expect = 1.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
+ +I I+I+I+I+II I+ + + I
Sbjct: 184 TYFLISIVILILILIIQILFFVFLTIYY 211
Score = 29.4 bits (67), Expect = 3.1
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHS----NISNI 52
F+I +II + I +I+I+I +I + ++ N++ I
Sbjct: 231 FLIALIIQVSIPLIVILIPLIYFLYSIIFGYYNQALNNLAFI 272
Score = 29.0 bits (66), Expect = 4.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
K L +II + I +I+I+I +I + II
Sbjct: 228 QKKFLIALIIQVSIPLIVILIPLIYFLYSIIFG 260
Score = 28.3 bits (64), Expect = 7.5
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 1 MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIII-------IIIINRIP 44
+ NK + +I II ++ +I I + I + ++ ++P
Sbjct: 114 LFTNKFRITWKKTRVLYLIFNYIIALLFLIPIYLNIPDQEEAKLKVLKKLP 164
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 31.1 bits (70), Expect = 1.1
Identities = 4/38 (10%), Positives = 21/38 (55%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNIS 50
++ +++ ++ ++ II +++I++ + +N+
Sbjct: 311 FSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLLANVI 348
Score = 28.4 bits (63), Expect = 7.8
Identities = 5/43 (11%), Positives = 23/43 (53%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
FI+++ +++ +++ ++ ++ II + I + ++ +
Sbjct: 303 GYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLLA 345
>gnl|CDD|223469 COG0392, COG0392, Predicted integral membrane protein [Function
unknown].
Length = 322
Score = 31.2 bits (71), Expect = 1.1
Identities = 4/33 (12%), Positives = 18/33 (54%)
Query: 8 YHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
Y + L ++ I+ +++ + ++++ ++I
Sbjct: 118 YSRLGLSVALVSRILAFLLLTFGLGLLLLFLLI 150
Score = 29.3 bits (66), Expect = 3.7
Identities = 2/40 (5%), Positives = 17/40 (42%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
I+ +++ + ++++ ++I++ + +
Sbjct: 130 RILAFLLLTFGLGLLLLFLLILLFVPLKLALFLLLLTLLL 169
Score = 29.3 bits (66), Expect = 3.9
Identities = 4/43 (9%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIII-------IIIIINRIPI 45
+ + I+ ++ +++ I+++ I++ + ++ + I +
Sbjct: 10 RSIIKKILGLLAVLLAIVLLFILLRLFGLDLKEVLAALKGINL 52
Score = 29.3 bits (66), Expect = 4.4
Identities = 2/33 (6%), Positives = 17/33 (51%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHS 47
I+ +++ + ++++ ++I++ + +
Sbjct: 128 VSRILAFLLLTFGLGLLLLFLLILLFVPLKLAL 160
>gnl|CDD|226227 COG3704, VirB6, Type IV secretory pathway, VirB6 components
[Intracellular trafficking and secretion].
Length = 406
Score = 31.3 bits (71), Expect = 1.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIII 40
I++ I+ +I+I +I II+ I
Sbjct: 189 GNGGILVAILAFWVIVISLIGYAIILYI 216
Score = 29.4 bits (66), Expect = 4.2
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIII 39
+ ++ I+ +I+I +I II+ I+
Sbjct: 189 GNGGILVAILAFWVIVISLIGYAIILYIM 217
Score = 29.0 bits (65), Expect = 5.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPI 45
I++ I+ +I+I +I II+ I+ I I
Sbjct: 193 ILVAILAFWVIVISLIGYAIILYIMAFIAI 222
Score = 28.2 bits (63), Expect = 9.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIII 40
W I+I +I II+ I+ I I++++
Sbjct: 200 FWVIVISLIGYAIILYIMAFIAIVVLLG 227
>gnl|CDD|216211 pfam00953, Glycos_transf_4, Glycosyl transferase family 4.
Length = 158
Score = 30.2 bits (69), Expect = 1.1
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
L + + +++ I++ + I+ +IN
Sbjct: 47 TSLGLPFGGGLELGLVLSILLTLFAIVGVIN 77
>gnl|CDD|218173 pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein.
Length = 223
Score = 30.6 bits (70), Expect = 1.2
Identities = 1/27 (3%), Positives = 16/27 (59%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIIIINRI 43
+ ++ + ++++ + +++++ +I
Sbjct: 102 ALAGLLAWLGVLLLFFVAAVVLLVAKI 128
Score = 30.2 bits (69), Expect = 1.5
Identities = 0/28 (0%), Positives = 14/28 (50%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIII 40
+ ++ + ++++ + +++++
Sbjct: 100 GAALAGLLAWLGVLLLFFVAAVVLLVAK 127
Score = 30.2 bits (69), Expect = 1.7
Identities = 0/27 (0%), Positives = 13/27 (48%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIII 40
+ ++ + ++++ + ++++
Sbjct: 98 GIGAALAGLLAWLGVLLLFFVAAVVLL 124
Score = 29.8 bits (68), Expect = 2.3
Identities = 2/28 (7%), Positives = 16/28 (57%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIII 40
W ++++ + +++++ I + +++
Sbjct: 108 AWLGVLLLFFVAAVVLLVAKIELALLLA 135
Score = 29.4 bits (67), Expect = 2.6
Identities = 1/26 (3%), Positives = 14/26 (53%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
++ + ++++ + +++++ I
Sbjct: 103 LAGLLAWLGVLLLFFVAAVVLLVAKI 128
Score = 29.1 bits (66), Expect = 3.9
Identities = 0/27 (0%), Positives = 15/27 (55%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIII 39
+ + ++ + ++++ + +++++
Sbjct: 99 IGAALAGLLAWLGVLLLFFVAAVVLLV 125
Score = 28.7 bits (65), Expect = 5.5
Identities = 1/27 (3%), Positives = 13/27 (48%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIII 40
I + ++ + ++++ + +++
Sbjct: 97 PGIGAALAGLLAWLGVLLLFFVAAVVL 123
Score = 28.3 bits (64), Expect = 6.1
Identities = 2/29 (6%), Positives = 12/29 (41%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
L I + ++ + ++++ + +
Sbjct: 94 LNGPGIGAALAGLLAWLGVLLLFFVAAVV 122
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 31.3 bits (70), Expect = 1.2
Identities = 32/196 (16%), Positives = 49/196 (25%), Gaps = 22/196 (11%)
Query: 232 NSTTHV--NGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTS--SLQSLP 287
+ HV + T T S T + S P ++ + PEDTS S +
Sbjct: 436 YTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSA 495
Query: 288 SEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDP--STPTNNPPAPSQVEMDGA 345
+ + N + T SDT P P T +P
Sbjct: 496 TPNATSPTP-----AVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPP------- 543
Query: 346 DDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESVSESEAPVTKEGEQKV 405
T E NN + S + + +
Sbjct: 544 ---TGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGI 600
Query: 406 PVEPTAPVPVESKTET 421
P + P + T T
Sbjct: 601 P-SSSHSTPRSNSTST 615
>gnl|CDD|215952 pfam00499, Oxidored_q3, NADH-ubiquinone/plastoquinone
oxidoreductase chain 6.
Length = 140
Score = 29.9 bits (68), Expect = 1.2
Identities = 9/55 (16%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 1 MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
+ N+K K F++++++++ I+++ ++ + +N I SN++ +
Sbjct: 61 LSPNEKFKFKKKSKFLLLLLLLLFILLLFFLLFSNLSFSLNSISS-SNVNLLSLL 114
Score = 28.4 bits (64), Expect = 4.6
Identities = 5/22 (22%), Positives = 14/22 (63%)
Query: 14 WFIIIIIIIIIIIIIIIIIIII 35
I I++ ++++I +I +I +
Sbjct: 119 SLIFILLSLLLLIALIGVIKLA 140
>gnl|CDD|217907 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily.
This superfamily includes fatty acid and carotene
hydroxylases and sterol desaturases. Beta-carotene
hydroxylase is involved in zeaxanthin synthesis by
hydroxylating beta-carotene, but the enzyme may be
involved in other pathways. This family includes C-5
sterol desaturase and C-4 sterol methyl oxidase.
Members of this family are involved in cholesterol
biosynthesis and biosynthesis a plant cuticular wax.
These enzymes contain two copies of a HXHH motif.
Members of this family are integral membrane proteins.
Length = 114
Score = 29.4 bits (66), Expect = 1.2
Identities = 6/45 (13%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 12 HLWFIIIIIIIIIIIIIII-------IIIIIIIIIINRIPIHSNI 49
H +++ +I +++++++ I++ +++ + + IHS +
Sbjct: 47 HPLEALLLALIPLLLLLLLFGLHLLVILLGLLLGTLLYLFIHSGL 91
>gnl|CDD|222946 PHA02935, PHA02935, Hypothetical protein; Provisional.
Length = 349
Score = 30.8 bits (69), Expect = 1.2
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISN 51
+I+I++I ++ IIIIII++I I + + +S+I +
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAMYKRSKYSHIDD 348
Score = 30.0 bits (67), Expect = 2.3
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINR 42
I+I++I ++ IIIIII++I I + R
Sbjct: 313 LIMIVLITMLSIIIIIIVVIAAIAMYKR 340
>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette
(ABC) transporters which generally bind type 2 PBPs.
These types of transporters consist of a PBP, two TMs,
and two cytoplasmic ABC ATPase subunits, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. For these transporters the ABCs and TMs are on
independent polypeptide chains. These systems transport
a diverse range of substrates. Most are specific for a
single substrate or a group of related substrates;
however some transporters are more promiscuous,
transporting structurally diverse substrates such as the
histidine/lysine and arginine transporter in
Enterobacteriaceae. In the latter case, this is achieved
through binding different PBPs with different
specificities to the TMs. For other promiscuous
transporters such as the multiple-sugar transporter Msm
of Streptococcus mutans, the PBP has a wide substrate
specificity. These transporters include the
maltose-maltodextrin, phosphate and sulfate
transporters, among others.
Length = 190
Score = 30.3 bits (69), Expect = 1.2
Identities = 5/42 (11%), Positives = 13/42 (30%)
Query: 1 MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
L +I+ +++I +I + I +
Sbjct: 60 FGVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPK 101
Score = 29.2 bits (66), Expect = 3.5
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIP 44
L + + +I+ +++I +I + IP
Sbjct: 69 LPGLGLPALILALLLIAPFARLIRRAALESIP 100
>gnl|CDD|235881 PRK06870, secG, preprotein translocase subunit SecG; Reviewed.
Length = 76
Score = 28.6 bits (65), Expect = 1.2
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 16 IIIIIIIIIIIIIIIIIIIIII 37
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 28.6 bits (65), Expect = 1.2
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 17 IIIIIIIIIIIIIIIIIIIIII 38
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 28.6 bits (65), Expect = 1.2
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 18 IIIIIIIIIIIIIIIIIIIIII 39
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 28.6 bits (65), Expect = 1.2
Identities = 3/22 (13%), Positives = 19/22 (86%)
Query: 19 IIIIIIIIIIIIIIIIIIIIII 40
+ +++++++I+ +++II++++
Sbjct: 1 MYTLLLVLLLIVALLLIILVLL 22
Score = 27.9 bits (63), Expect = 2.1
Identities = 3/21 (14%), Positives = 19/21 (90%)
Query: 15 FIIIIIIIIIIIIIIIIIIII 35
+ +++++++I+ +++II++++
Sbjct: 2 YTLLLVLLLIVALLLIILVLL 22
>gnl|CDD|218875 pfam06053, DUF929, Domain of unknown function (DUF929). Family
of proteins from the archaeon Sulfolobus, with
undetermined function.
Length = 249
Score = 30.5 bits (69), Expect = 1.2
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 23 IIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
+I+I I+++II+III + P+++ + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLSAPVYNALVEL 32
Score = 30.5 bits (69), Expect = 1.3
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
+I+I I+++II+III + + + + + +
Sbjct: 3 LIVIAIVVLIIVIIIGVYLSAPVYNALVELSQQVYAT 39
Score = 29.7 bits (67), Expect = 2.5
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 21 IIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNE 58
+I+I I+++II+III + + + + Y
Sbjct: 3 LIVIAIVVLIIVIIIGVYLSAPVYNALVELSQQVYATV 40
>gnl|CDD|224671 COG1757, NhaC, Na+/H+ antiporter [Energy production and
conversion].
Length = 485
Score = 31.1 bits (71), Expect = 1.3
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 7 HYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
+ III+I + ++ + ++I++ I
Sbjct: 62 RGLGFNYKDIIILIFLGLLGALTALLILLGIGAA 95
>gnl|CDD|132697 TIGR03658, IsdH_HarA, haptoglobin-binding heme uptake protein HarA.
HarA is a heme-binding NEAT-domain (NEAr Transporter,
pfam05031) protein which has been shown to bind to the
haptoglobin-hemoglobin complex in order to extract heme
from it. HarA has also been reported to bind hemoglobin
directly. HarA (also known as IsdH) contains three NEAT
domains as well as a sortase A C-terminal signal for
localization to the cell wall. The heme bound at the
third of these NEAT domains has been shown to be
transferred to the IsdA protein also localized at the
cell wall, presumably through an additional specific
protein-protein interaction. Haptoglobin is a hemoglobin
carrier protein involved in scavenging hemoglobin in the
blood following red blood cell lysis and targetting it
to the liver.
Length = 895
Score = 31.4 bits (70), Expect = 1.3
Identities = 29/129 (22%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 220 SLSSNNTNNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPED 279
++ +N+ ++++ ++ T+ N +NQ T ++ +N AT N S P++P+
Sbjct: 237 AVVTNDQSSSDASNQTNTNTSNQNTSTINNANNQPQATTN-----------MSQPAQPKS 285
Query: 280 TSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQ 339
+++ S+ + + S GN T+D TN+S +SD N P + + P+
Sbjct: 286 SANADQASSQPAHETNSNGN--TNDKTNES----SNQSDVNQQYPPADESLQDAIKNPAI 339
Query: 340 VEMDGADDN 348
++ + DN
Sbjct: 340 IDKEHTADN 348
>gnl|CDD|233180 TIGR00912, 2A0309, spore germination protein (amino acid permease).
This model describes spore germination protein GerKB
and paralogs from Bacillus subtilis, Clostridium tetani,
and other known or predicted endospore-forming members
of the Firmicutes (low-GC Gram positive bacteria).
Members show some similarity to amino acid permeases
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 359
Score = 30.7 bits (70), Expect = 1.3
Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 14 WFIIIIIIIIIIIIIIIIIIII-IIIIINRIPI 45
I++II +I+ I+++I++ + I N +P+
Sbjct: 140 TAEILLIIFLILFILVLILLAPKLGNIKNLLPV 172
Score = 29.2 bits (66), Expect = 4.2
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 17/56 (30%)
Query: 13 LWFIIIIIIII----------------IIIIIIIIIIIIIIIIINRIPIHSNISNI 52
+ III+III+ I++II +I+ I+++I+ + NI N+
Sbjct: 115 IIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLILLAPKLG-NIKNL 169
Score = 28.4 bits (64), Expect = 7.1
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 16 IIIIIIIIIIIIIII------------IIIIIIIIIINRIPIHSNISNIGWYQNELP 60
II+III+III+ I I I++II +I+ + + +G +N LP
Sbjct: 115 IIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLILLAPKLGNIKNLLP 171
>gnl|CDD|217757 pfam03840, SecG, Preprotein translocase SecG subunit.
Length = 74
Score = 28.6 bits (65), Expect = 1.3
Identities = 5/21 (23%), Positives = 18/21 (85%)
Query: 15 FIIIIIIIIIIIIIIIIIIII 35
+ I++++ +I+ I++II++++
Sbjct: 1 YTILLVLHVIVAILLIILVLL 21
Score = 27.8 bits (63), Expect = 2.0
Identities = 5/21 (23%), Positives = 17/21 (80%)
Query: 16 IIIIIIIIIIIIIIIIIIIII 36
I++++ +I+ I++II++++
Sbjct: 1 YTILLVLHVIVAILLIILVLL 21
Score = 27.8 bits (63), Expect = 2.0
Identities = 5/21 (23%), Positives = 17/21 (80%)
Query: 17 IIIIIIIIIIIIIIIIIIIII 37
I++++ +I+ I++II++++
Sbjct: 1 YTILLVLHVIVAILLIILVLL 21
Score = 27.8 bits (63), Expect = 2.0
Identities = 5/21 (23%), Positives = 17/21 (80%)
Query: 18 IIIIIIIIIIIIIIIIIIIII 38
I++++ +I+ I++II++++
Sbjct: 1 YTILLVLHVIVAILLIILVLL 21
Score = 27.8 bits (63), Expect = 2.0
Identities = 5/21 (23%), Positives = 17/21 (80%)
Query: 19 IIIIIIIIIIIIIIIIIIIII 39
I++++ +I+ I++II++++
Sbjct: 1 YTILLVLHVIVAILLIILVLL 21
Score = 27.8 bits (63), Expect = 2.0
Identities = 5/21 (23%), Positives = 17/21 (80%)
Query: 20 IIIIIIIIIIIIIIIIIIIII 40
I++++ +I+ I++II++++
Sbjct: 1 YTILLVLHVIVAILLIILVLL 21
Score = 27.1 bits (61), Expect = 4.3
Identities = 4/20 (20%), Positives = 16/20 (80%)
Query: 14 WFIIIIIIIIIIIIIIIIII 33
++++ +I+ I++II++++
Sbjct: 2 TILLVLHVIVAILLIILVLL 21
>gnl|CDD|151190 pfam10694, DUF2500, Protein of unknown function (DUF2500). The
members of this family are largely confined to the
Gammaproteobacteria. The function is not known.
Length = 107
Score = 29.1 bits (66), Expect = 1.4
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 22 IIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
+ I++II II + I + + + I I N
Sbjct: 2 LFFILVIIAIIGLAIFVFVRQ--IRKWIKNE 30
Score = 28.3 bits (64), Expect = 3.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 13 LWFIIIIIIIIIIIIIIII 31
L+FI++II II + I + +
Sbjct: 2 LFFILVIIAIIGLAIFVFV 20
Score = 28.0 bits (63), Expect = 3.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 14 WFIIIIIIIIIIIIIIIII 32
F I++II II + I + +
Sbjct: 2 LFFILVIIAIIGLAIFVFV 20
>gnl|CDD|202397 pfam02790, COX2_TM, Cytochrome C oxidase subunit II,
transmembrane domain. The N-terminal domain of
cytochrome C oxidase contains two transmembrane
alpha-helices.
Length = 83
Score = 28.7 bits (65), Expect = 1.4
Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
H ++I+ +I+I++ I++ ++ + NR + I W
Sbjct: 24 HD--HTMMILTLILILVSYILVSLLFNKLTNRYLLEGQTIEIIW 65
>gnl|CDD|233430 TIGR01477, RIFIN, variant surface antigen, rifin family. This
model represents the rifin branch of the rifin/stevor
family (pfam02009) of predicted variant surface antigens
as found in Plasmodium falciparum. This model is based
on a set of rifin sequences kindly provided by Matt
Berriman from the Sanger Center. This is a global model
and assesses a penalty for incomplete sequence.
Additional fragmentary sequences may be found with the
fragment model and a cutoff of 20 bits.
Length = 353
Score = 30.9 bits (70), Expect = 1.4
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINR 42
II II I+II++I++II +I R
Sbjct: 312 IIASIIAILIIVLIMVIIYLILR 334
Score = 30.5 bits (69), Expect = 1.9
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIII 38
++ II II I+II++I++II +I
Sbjct: 308 YYTPIIASIIAILIIVLIMVIIYLI 332
Score = 30.1 bits (68), Expect = 2.5
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 19 IIIIIIIIIIIIIIIIIIIII 39
II II I+II++I++II +I
Sbjct: 312 IIASIIAILIIVLIMVIIYLI 332
>gnl|CDD|234460 TIGR04084, rSAM_AF0577, putative peptide-modifying radical SAM
enzyme, AF0577 family. This radical SAM family contains
a C-terminal region motif CXXCX5CX3C that is found in
PqqE and other radical SAM enzymes that act on peptide
substrates. Members of this family are found primarily
in the Archaea, but also several eukaryotes (Trichomonas
vaginalis G3, Entamoeba dispar SAW760, Giardia
intestinalis ATCC 50581, etc.). The function is unknown.
Length = 347
Score = 30.9 bits (70), Expect = 1.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 141 EVAPFMADECLMAIPE----IEG---IDYTTKEYLKFVNFINNTVERLNKESK 186
E + CL AI E EG +D TKEYL+ V I +E L +
Sbjct: 276 EYRRYCGGRCLYAIKERYWGEEGFKAVDEVTKEYLRTVLEIIPEIESLVDKGV 328
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 31.2 bits (71), Expect = 1.4
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 10/126 (7%)
Query: 302 TDDVTNDSVMTLGAESDTNTNDLPDP---STPTNNPPAPSQVEMDGADDNASAEPPLKKT 358
+ V V+ + + P + P P + +D + E
Sbjct: 892 AEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQV----ITESDVAVAQEVAEHAE 947
Query: 359 KLSEPENEVANNGESSEAAKPEKNGASEPESVSESEAPVTKEGEQKVPVEPTAPVPVESK 418
+ EP++E A+ E++E A+ +EPE V++ APV E +V V
Sbjct: 948 PVVEPQDETADIEEAAETAEVV---VAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPA 1004
Query: 419 TETLRV 424
Sbjct: 1005 QVPEAT 1010
>gnl|CDD|216390 pfam01252, Peptidase_A8, Signal peptidase (SPase) II.
Length = 143
Score = 29.7 bits (68), Expect = 1.4
Identities = 5/32 (15%), Positives = 16/32 (50%)
Query: 23 IIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
+ +I ++ I+ ++ + R+ S ++ I
Sbjct: 54 WFLSLIALLAILALLYYLLRLKKRSRLAAIAL 85
>gnl|CDD|223646 COG0573, PstC, ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 310
Score = 30.7 bits (70), Expect = 1.4
Identities = 5/32 (15%), Positives = 18/32 (56%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRIPI 45
++ +I+++ +++I++ ++I IP
Sbjct: 19 KLFKALLFAAAVIVVLALLLILVFLLIEAIPA 50
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 30.9 bits (70), Expect = 1.5
Identities = 27/186 (14%), Positives = 58/186 (31%), Gaps = 15/186 (8%)
Query: 222 SSNNTNNTNGNSTTHVNGTNQALDT---------CSDESNLEPATQNNKPDESTVPAASS 272
+S +T++ + + + N +NQ + SD +N+ N P T
Sbjct: 51 TSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLP--QTNINQLL 108
Query: 273 LPSEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTN 332
++ +D SL +L + I + + S SD++ T T
Sbjct: 109 TKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSI----KNDTDTQ 164
Query: 333 NPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESVSE 392
+ N + K S + + + +S ++ S
Sbjct: 165 SSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSM 224
Query: 393 SEAPVT 398
S++ +
Sbjct: 225 SDSALD 230
Score = 30.9 bits (70), Expect = 1.5
Identities = 29/253 (11%), Positives = 70/253 (27%), Gaps = 39/253 (15%)
Query: 216 EDIRSLSSNNTNNTNGNSTTH----------VNGTNQALDTCSDESNLEPATQNNKP--- 262
+ + +++N +N + +T ++ + L + L ++
Sbjct: 61 DKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLT 120
Query: 263 -------------DESTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDS 309
+ P S + + +S S+ ++ S + + S
Sbjct: 121 TLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTD-TQSSKQDKADNQKAPSS 179
Query: 310 VMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDGADD------NASAEPPLKKTKLSEP 363
T + S+ N +N S + ++ L
Sbjct: 180 NNTKPSTSNKQPNSPKPTQPNQSNSQPASD--DTANQKSSSKDNQSMSDSALDSILDQYS 237
Query: 364 ENEVANNGE---SSEAAKPEKNGASEPESVSESEAPVTKEGEQKVPVE-PTAPVPVESKT 419
E+ + S+ K E + P+ ++ E + Q + + S
Sbjct: 238 EDAKKTQKDYASQSKKDKTETSNTKNPQLPTQDELKHKSKPAQSFENDVNQSNTRSTSLF 297
Query: 420 ETLRVMLINNSSS 432
ET + N+ S
Sbjct: 298 ETGPSLSNNDDSG 310
Score = 29.4 bits (66), Expect = 4.6
Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 29/163 (17%)
Query: 214 LLEDIRSLSSNNT------------------NNTNGNSTTHVNGTNQALDTCSDESNLEP 255
L I++L + N+ N + +S + T + +D P
Sbjct: 119 LTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQK-AP 177
Query: 256 ATQNNKPDESTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSIGNNHT-DDVTNDSVMTLG 314
++ N KP S S P++P ++S Q + + S +N + D DS++
Sbjct: 178 SSNNTKPSTSNKQPNSPKPTQPNQSNS-QPASDDTANQKSSSKDNQSMSDSALDSILDQY 236
Query: 315 AESDTNTNDLPDPSTPTN--------NPPAPSQVEMDGADDNA 349
+E T + + NP P+Q E+ A
Sbjct: 237 SEDAKKTQKDYASQSKKDKTETSNTKNPQLPTQDELKHKSKPA 279
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 31.0 bits (71), Expect = 1.5
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIP 44
WF+ +I + ++I+I+I ++ + +
Sbjct: 434 QPWFMDLIKLAAGALLILILIFFVLRPRLRPLL 466
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense
mechanisms].
Length = 455
Score = 30.7 bits (70), Expect = 1.6
Identities = 3/37 (8%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 5 KKHYH--KHHLWFIIIIIIIIIIIIIIIIIIIIIIII 39
K L +++ +++ +++ I+++ ++
Sbjct: 86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLL 122
>gnl|CDD|213361 cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily
of the Escherichia coli CorA-Salmonella typhimurium ZntB
family. A uncharacterized subfamily of the Escherichia
coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like)
family of the MIT superfamily of essential membrane
proteins involved in transporting divalent cations
(uptake or efflux) across membranes.The EcCorA-ZntB-like
family includes the Mg2+ transporters Escherichia coli
and Salmonella typhimurium CorAs, which can also
transport Co2+, and Ni2+. Structures of the
intracellular domain of EcCorA-ZntB-like family members,
Vibrio parahaemolyticus and Salmonella typhimurium ZntB,
form funnel-shaped homopentamers, the tip of the funnel
is formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA. Natural
variants such as GVN and GIN, such as occur in some ZntB
family proteins, may be associated with the transport of
different divalent cations, such as zinc and cadmium.
The functional diversity of MIT transporters may also be
due to minor structural differences regulating gating,
substrate selection, and transport.
Length = 289
Score = 30.5 bits (70), Expect = 1.6
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIIIIII 34
F II++I +++ +I+ +I+
Sbjct: 259 ADSPYAFWIILLISLLLSVIVALILR 284
>gnl|CDD|233780 TIGR02210, rodA_shape, rod shape-determining protein RodA. This
protein is a member of the FtsW/RodA/SpoVE family
(pfam01098). It is found only in species with rod (or
spiral) shapes. In many species, mutation of rodA has
been shown to correlate with loss of the normal rod
shape. Note that RodA homologs are found, scoring below
the cutoffs for this model, in a number of both
rod-shaped and coccoid bacteria, including four proteins
in Bacillus anthracis, for example [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Cellular processes, Cell division].
Length = 352
Score = 30.6 bits (70), Expect = 1.6
Identities = 7/54 (12%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 2 IQNKKHYHKHHLWFIIIIIIIIIIII---------IIIIIIIIIIIIINRIPIH 46
K L +I+I++ ++I ++I+ I + ++ + +
Sbjct: 116 RPLDKPPRLKDLLKALILILVPALLILKQPDLGTALVILAIGLFVLFLAGLSWK 169
>gnl|CDD|205242 pfam13061, DUF3923, Protein of unknown function (DUF3923). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 80 amino acids in
length.
Length = 66
Score = 28.0 bits (63), Expect = 1.6
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIIIINR 42
+I + ++ + +II+I +I +II +
Sbjct: 40 LITLAVLGVAFLIILIGQLIWLIILK 65
>gnl|CDD|165311 PHA03011, PHA03011, hypothetical protein; Provisional.
Length = 120
Score = 29.1 bits (65), Expect = 1.7
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 18 IIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISN 51
+ + I+II+I IIIII+ IIN P SNI N
Sbjct: 1 MKLFFILIILISSIIIIILYKIINIPPYESNILN 34
>gnl|CDD|215647 pfam00002, 7tm_2, 7 transmembrane receptor (Secretin family). This
family is known as Family B, the secretin-receptor
family or family 2 of the G-protein-coupled receptors
(GCPRs).They have been described in many animal species,
but not in plants, fungi or prokaryotes. Three distinct
sub-families are recognised. Subfamily B1 contains
classical hormone receptors, such as receptors for
secretin and glucagon, that are all involved in
cAMP-mediated signalling pathways. Subfamily B2 contains
receptors with long extracellular N-termini, such as the
leukocyte cell-surface antigen CD97 ;
calcium-independent receptors for latrotoxin, and
brain-specific angiogenesis inhibitors amongst others.
Subfamily B3 includes Methuselah and other Drosophila
proteins. Other than the typical seven-transmembrane
region, characteristic structural features include an
amino-terminal extracellular domain involved in ligand
binding, and an intracellular loop (IC3) required for
specific G-protein coupling.
Length = 239
Score = 30.3 bits (69), Expect = 1.7
Identities = 7/32 (21%), Positives = 19/32 (59%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
W+I ++++I++ I I I+ I++ ++
Sbjct: 148 GFWWIFKGPVLLVILVNFIFFINILRILVQKL 179
Score = 29.1 bits (66), Expect = 3.8
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIIIIIIIIIII 39
+ W ++++I++ I I I+ I++
Sbjct: 146 NGGFWWIFKGPVLLVILVNFIFFINILRILV 176
>gnl|CDD|220280 pfam09529, Intg_mem_TP0381, Integral membrane protein
(intg_mem_TP0381). This entry represents a family of
hydrophobic proteins with seven predicted transmembrane
alpha helices. Members are found in Bacillus subtilis
(ywaF), TP0381 from Treponema pallidum (TP0381),
Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Length = 225
Score = 30.3 bits (69), Expect = 1.7
Identities = 9/62 (14%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 12 HLWFIIIIIIIIIIIIII-----------IIIIIIIIIIINRIPIHSNISNIGWY--QNE 58
H+ + + +++II+++++ I I++++ I ++ +G++
Sbjct: 11 HISILAVFVLLIILLVLLGRRQTERQKRLFRRIFAILLLLQEIALYLWYIYLGYFPLSES 70
Query: 59 LP 60
LP
Sbjct: 71 LP 72
>gnl|CDD|218918 pfam06161, DUF975, Protein of unknown function (DUF975). Family of
uncharacterized bacterial proteins.
Length = 251
Score = 30.1 bits (68), Expect = 1.7
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 24/66 (36%)
Query: 13 LWFIIIIIIIIIIII-------------------IIIIIIIIIIIIINRIPIHSNISNIG 53
LW +I I ++IIII I I+I +++I++I I I
Sbjct: 119 LWSLIATIGLLIIIISSHLALSSSEIEDNLMVFGIGILISLLLILLIPGI-----IIGYA 173
Query: 54 WYQNEL 59
+ Q E
Sbjct: 174 YSQVEY 179
Score = 28.2 bits (63), Expect = 8.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHS 47
L +I+ I + + +I I ++IIII + + + S
Sbjct: 107 LLLLILKGIFLFLWSLIATIGLLIIIISSHLALSS 141
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 30.4 bits (69), Expect = 1.7
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 2/101 (1%)
Query: 327 PSTPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGASE 386
P P PP A P+++ + S + A + S
Sbjct: 101 PRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSA 160
Query: 387 PESVSESEAPVTK--EGEQKVPVEPTAPVPVESKTETLRVM 425
P+ ++ P + + EP + + E + VM
Sbjct: 161 PQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEAVIVM 201
>gnl|CDD|226884 COG4478, COG4478, Predicted membrane protein [Function unknown].
Length = 210
Score = 30.1 bits (68), Expect = 1.7
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 28/112 (25%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGKDAHLNH 74
+I I ++III + +++ I + I + IH Q E + K N+
Sbjct: 4 KLIFIFSLLIIIALSVLLTIFLAWWIYPLEIH-------SLQLE--SSVNMSLKKIGHNY 54
Query: 75 EELVQLMKWKQTLNYLVKVNTPRAVMMETKKAFKKLPNLELALSALSNLKGV 126
L +NYL KK LPN + S L + V
Sbjct: 55 SIL---------INYLTN----------PKKTDLNLPNFPSSASGLHHFADV 87
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 30.6 bits (70), Expect = 1.7
Identities = 2/39 (5%), Positives = 20/39 (51%)
Query: 4 NKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
+ L ++++++ I++ ++ + ++ ++ ++
Sbjct: 278 DLSSLLLSLLLLVLLLLVAILLGKLLGVFLLARLLGLSL 316
Score = 29.1 bits (66), Expect = 5.5
Identities = 3/43 (6%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
L +++++++++ I++ ++ + ++ + + + + +G+
Sbjct: 283 LLSLLLLVLLLLVAILLGKLLGVFLLARLLGLSLREALI-VGF 324
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed.
Length = 434
Score = 30.7 bits (69), Expect = 1.7
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPIH--SNISNIGWYQ----NELPKKIKARG 67
II +++I ++I+ I++ +I I + +IPI +S YQ LP K+ + G
Sbjct: 214 IIKMLLIGLVILAIVVGVIYIQQAVRKIPIQYAKAVSGNNQYQGAKNTHLPLKVNSAG 271
>gnl|CDD|220572 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocytoplasmic
transport domain. Brr6_like_C_C is the highly
conserved C-terminal region of a group of proteins
found in fungi. It carries four highly conserved
cysteine residues. It is suggested that members of the
family interact with each other via di-sulfide bridges
to form a complex which is involved in
nucleocytoplasmic transport. Brr6 in yeast is an
essential integral membrane protein of the NE-ER, wit
two predicted transmembrane domains, and is a dosage
suppressor of Apq12, pfam12716.
Length = 135
Score = 29.5 bits (67), Expect = 1.8
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIII---IINRIPIHS 47
+ +I II++ II+ ++ I I I ++I
Sbjct: 2 SSYLQLIFNIILVSIILYLVFSFIKTIRKDIQHKIEEQK 40
>gnl|CDD|220496 pfam09972, DUF2207, Predicted membrane protein (DUF2207). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 503
Score = 30.8 bits (70), Expect = 1.8
Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 4 NKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIP--IHSNISNIG-----WYQ 56
++K ++ + + ++ + I+ +II+I+ I+I + + + + IG
Sbjct: 381 DRKGLFDNYRYLKMGSLLGLSILTLIILILSFILISLVLAALVLLAIVLVIGSVIAAILP 440
Query: 57 NELPKKIKARGKDAHLNHEELVQLMKWKQTLN 88
+L + G EE ++ +K L
Sbjct: 441 RKLFGRWTPEGA------EEYLEWKGFKNYLK 466
>gnl|CDD|233873 TIGR02454, CbiQ_TIGR, cobalt ABC transporter, permease protein
CbiQ. This model represents the permease component of
the cobalt-specific ABC transporter. This model finds
permeases which are generally next to the other
subunits of the complex (CbiN and CbiO) or the
cobalamin biosynthesis protein CbiM which is a
transmembrane protein which likely interacts with the
complex in some manner. In genomes which possess all of
these subunits the ATPase is most likely running in the
direction of import (for the biosynthesis of coenzyme
B12). In other genomes, this subunit may be involved in
the export of cobalt and/or other closely related heavy
metals [Transport and binding proteins, Cations and
iron carrying compounds].
Length = 198
Score = 29.9 bits (68), Expect = 1.8
Identities = 5/37 (13%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 13 LWFIIIIIIII---IIIIIIIIIIIIIIIIINRIPIH 46
++++ ++ I ++I+ I ++++ + IP+
Sbjct: 9 SALALLVLAVLLPNPIALLILAIFALLLVGLAGIPLR 45
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 30.5 bits (69), Expect = 1.8
Identities = 4/38 (10%), Positives = 21/38 (55%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNI 49
+ ++ I+++++ ++ +++ ++I II+ +
Sbjct: 13 YKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGE 50
Score = 29.7 bits (67), Expect = 3.2
Identities = 4/33 (12%), Positives = 19/33 (57%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHS 47
F + + +I+++I+ ++ +++ ++ + S
Sbjct: 148 FSLSWRLALILLLILPLLALVLSLLARKSRKLS 180
Score = 28.9 bits (65), Expect = 6.0
Identities = 7/47 (14%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 12 HLWFIIIIIIIIIIII----------IIIIIIIIIIIIINRIPIHSN 48
L F I+++I +++ I+++I+ ++ ++++ + S
Sbjct: 131 VLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSR 177
>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family.
Length = 221
Score = 30.1 bits (68), Expect = 1.8
Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 19/51 (37%)
Query: 9 HKHHLWFIIIIIIIIIIIIIII-------------------IIIIIIIIII 40
+ + I+II++ +II+++ I+++I+ I+
Sbjct: 39 LNDSIRALYILIIVLGVIILLVGFLGCCGAIKESRCLLLTYFILLLILFIL 89
Score = 29.7 bits (67), Expect = 2.8
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
II + + I +I ++ II+ + +
Sbjct: 190 KKNLKIIGGVGLGIAVIQLLGIILACCLCRS 220
Score = 29.3 bits (66), Expect = 3.1
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 21 IIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQN 57
I+++I+ I+ I I+ + R + S++ Y++
Sbjct: 80 FILLLILFILEIAAGILAFVYRDKLESSLKEGLNYKD 116
Score = 29.3 bits (66), Expect = 3.1
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIIIINRI 43
II + + I +I ++ II+ + I
Sbjct: 195 IIGGVGLGIAVIQLLGIILACCLCRSI 221
Score = 29.3 bits (66), Expect = 3.4
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIII 35
L + I+++I+ I+ I I+ +
Sbjct: 77 LTYFILLLILFILEIAAGILAFV 99
Score = 28.9 bits (65), Expect = 4.4
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIIIII 39
K ++ I+++I+ I+ I I+ +
Sbjct: 70 KESRCLLLTYFILLLILFILEIAAGILAFV 99
Score = 28.5 bits (64), Expect = 6.0
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNE 58
FI+++I+ I+ I I+ + + + + N + + +
Sbjct: 80 FILLLILFILEIAAGILAFVYRDKLESSLKEGLNYKDKSYNDDP 123
>gnl|CDD|218994 pfam06333, Med13_C, Mediator complex subunit 13 C-terminal.
Mediator is a large complex of up to 33 proteins that is
conserved from plants through fungi to humans - the
number and representation of individual subunits varying
with species. It is arranged into four different
sections, a core, a head, a tail and a kinase-activity
part, and the number of subunits within each of these is
what varies with species. Overall, Mediator regulates
the transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Med13 is part of the
ancillary kinase module, together with Med12, CDK8 and
CycC, which in yeast is implicated in transcriptional
repression, though most of this activity is likely
attributable to the CDK8 kinase. The large Med12 and
Med13 proteins are required for specific developmental
processes in Drosophila, zebrafish, and Caenorhabditis
elegans but their biochemical functions are not
understood.
Length = 406
Score = 30.4 bits (69), Expect = 1.8
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 15/114 (13%)
Query: 276 EPEDTSSLQSLPSEKSL--------DDGSIGNNHTDDVTNDSVMTLGAESDTNT-NDLPD 326
E + + L S + + + D + D T + S+++T P
Sbjct: 202 ELKHWTRLSSKYNPRIISLCLVSVDTDPKL---VPDPPTQPIPFSRFNTSNSSTPQSTPC 258
Query: 327 PS---TPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAA 377
+P AP+ + +DNA P S+P++ + + + +
Sbjct: 259 TLSFPSPDQFGNAPTPPLGENGNDNAPPVTPPGSPSESDPDSILVDIDDETWGV 312
>gnl|CDD|114838 pfam06143, Baculo_11_kDa, Baculovirus 11 kDa family. Family of
uncharacterized Baculovirus proteins that are all about
11 kDa in size.
Length = 84
Score = 28.4 bits (64), Expect = 1.8
Identities = 6/27 (22%), Positives = 19/27 (70%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIIN 41
F+++I ++ ++I++ I++++ I N
Sbjct: 36 FVLVICGFVVFVMIVLFILLLVNINKN 62
>gnl|CDD|233015 TIGR00544, lgt, prolipoprotein diacylglyceryl transferase. The
conversion of lipoprotein precursors into lipoproteins
consists of three steps. First, the enzyme described by
this model transfers a diacylglyceryl moiety from
phosphatidylglycerol to the side chain of a Cys that
will become the new N-terminus. Second, the signal
peptide is removed by signal peptidase II. Finally, the
free amino group of the new N-terminal Cys is acylated
by apolipoprotein N-acyltransferase [Protein fate,
Protein modification and repair].
Length = 278
Score = 30.4 bits (69), Expect = 1.9
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNIS 50
F+ I + I+ +++I I+II+++
Sbjct: 241 FSFLNISMGQILSLLMIAGILIIMLLAYKLSDKWKENK 278
>gnl|CDD|219372 pfam07314, DUF1461, Protein of unknown function (DUF1461). This
family contains a number of hypothetical bacterial
proteins of unknown function approximately 200 residues
long. These are possibly integral membrane proteins.
Length = 180
Score = 29.9 bits (68), Expect = 1.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 6 KHYHKHHLWFIIIIIIIIIIIIIIIIIIIIII 37
K W +++ II++I+ +II +I +I
Sbjct: 112 YLLKKKKKWKLLLKTSIILLILPLIIGLIALI 143
>gnl|CDD|224209 COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy
production and conversion].
Length = 381
Score = 30.4 bits (69), Expect = 1.9
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 6 KHYHKHHLWFIIIIIIIIIII---IIIIIIIIIIIIIINRI 43
+ ++ I +I I+ I ++ + I I RI
Sbjct: 320 RSPRDRPVFTGIGVIFIVSFIVLTVLGALPGIPATTWIGRI 360
>gnl|CDD|202705 pfam03626, COX4_pro, Prokaryotic Cytochrome C oxidase subunit IV.
Cytochrome c oxidase (COX) is a multi-subunit enzyme
complex that catalyzes the final step of electron
transfer through the respiratory chain on the
mitochondrial inner membrane. This family is composed
of cytochrome c oxidase subunit 4 from prokaryotes.
Length = 75
Score = 28.2 bits (64), Expect = 1.9
Identities = 5/23 (21%), Positives = 18/23 (78%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIII 31
H+ L+ ++I++I+++ ++I++
Sbjct: 53 HEPRLFRLLILLILVLGSLLIML 75
Score = 27.8 bits (63), Expect = 2.1
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 12 HLWFIIIIIIIIIIIIIIIII 32
F ++I++I+++ ++I++
Sbjct: 55 PRLFRLLILLILVLGSLLIML 75
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 30.2 bits (67), Expect = 2.0
Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 330 PTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAA--KPEKNGASE- 386
P A G + A AEP + K E E E+ A K E+ A E
Sbjct: 196 PGEEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEEA 255
Query: 387 PESVSESEAPVTKEGEQKVPVEPTAP 412
S + EAP E E EP AP
Sbjct: 256 GASSAAQEAPAA-EQEAAPAEEPAAP 280
>gnl|CDD|225813 COG3274, COG3274, Predicted O-acyltransferase [General function
prediction only].
Length = 332
Score = 30.4 bits (69), Expect = 2.0
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 2 IQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIII 34
+Q YH LWF+ I+ I +I +I +I++
Sbjct: 110 LQKPVFYH---LWFLFAILGIYLISPLIQVILV 139
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed.
Length = 404
Score = 30.4 bits (69), Expect = 2.1
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 16 IIIIIIIIIIIIIIIIIIIIII----IIINRIPIHSN 48
I+II++I+++II + + I + I N I H+
Sbjct: 188 IVIILLILLVIITLFFLYFIELVEYRIPYNDIMNHNR 224
>gnl|CDD|177155 MTH00092, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 111
Score = 28.7 bits (65), Expect = 2.1
Identities = 5/50 (10%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNIS-------NIGWYQN 57
+++I + + +++++++ ++ + + +S ++G QN
Sbjct: 1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQN 50
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 30.3 bits (69), Expect = 2.1
Identities = 6/55 (10%), Positives = 20/55 (36%), Gaps = 17/55 (30%)
Query: 6 KHYHKHHLWFIIIIIIIIIIIII-----------------IIIIIIIIIIIINRI 43
+ I +++ ++ I I I+++I++ + + R+
Sbjct: 123 ARLRRRLRRLIWVLVPLLFISIFAENLPDGLARDVLGRLAFILLLILLSLFLWRL 177
>gnl|CDD|223248 COG0170, SEC59, Dolichol kinase [Lipid metabolism].
Length = 216
Score = 29.7 bits (67), Expect = 2.1
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 4 NKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
K + + I ++ ++ I + I I+++
Sbjct: 88 EKNGPGLGGIIYFIGGGLLASLLFPIEVAIAGILVLA 124
>gnl|CDD|218853 pfam06011, TRP, Transient receptor potential (TRP) ion channel.
This family of proteins are transient receptor potential
(TRP) ion channels. They are essential for cellular
viability and are involved in cell growth and cell wall
synthesis. The genes for these proteins are homologous
to polycystic kidney disease related ion channel genes.
Length = 531
Score = 30.3 bits (69), Expect = 2.2
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 21/66 (31%)
Query: 7 HYHKHHLWFIIIIIIII-----------------IIIIIIIIIIIIIIIIINRIPIH--- 46
Y WF+++ + + ++ ++II ++ +I++I R P
Sbjct: 386 QYRADAYWFVVVPLAYMFVRGLFIGALQGSGKAQVVGLLIIEVLYLILLIWFR-PYMDKR 444
Query: 47 SNISNI 52
+N NI
Sbjct: 445 TNALNI 450
Score = 29.9 bits (68), Expect = 3.3
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIII 37
++F+I+I +I++++I I+ ++
Sbjct: 253 FIFFLIVIALIVVLVIQFKFILELLA 278
Score = 29.5 bits (67), Expect = 4.4
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
FI +I+I +I++++I I+ ++
Sbjct: 253 FIFFLIVIALIVVLVIQFKFILELLA 278
>gnl|CDD|224596 COG1682, TagG, ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 263
Score = 29.9 bits (68), Expect = 2.2
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 15 FIIIIIIII---IIIIIIIIIIIIIIIIINRIPI 45
I+ + + +I +III+I +II+ P
Sbjct: 108 LILPVARTLSRLFNFLIHLIIILIFLIILGVEPS 141
Score = 28.7 bits (65), Expect = 5.8
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIII 39
L + +I +III+I +II+ +
Sbjct: 114 RTLSRLFNFLIHLIIILIFLIILGVEPSW 142
>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport
system inner membrane component. The alignments cover
the most conserved region of the proteins, which is
thought to be located in a cytoplasmic loop between two
transmembrane domains. The members of this family have
a variable number of transmembrane helices.
Length = 183
Score = 29.6 bits (67), Expect = 2.2
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
H II+ ++ +I + +
Sbjct: 49 GHGILPAIILALLGWAGYARLIRRAALRSLPS 80
Score = 28.8 bits (65), Expect = 3.5
Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 22/142 (15%)
Query: 12 HLWFIIIIIIIIIIIII------IIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKA 65
I++++I I+ I+ II+ ++ R+ + + ++ ++L + +A
Sbjct: 32 SFVLAILLVVISILSILGHGILPAIILALLGWAGYARLIRRAALRSL---PSDLVEAARA 88
Query: 66 RGKDAHLNHEELVQLMKWKQTLNYLVKVNTPRAVMMETKKAFKKLPNLELALSALSNLKG 125
G Q ++ N ++ AF + L L + G
Sbjct: 89 LG-------------ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG 135
Query: 126 VGTTLASALLAAATPEVAPFMA 147
+G L A+L PE+ +
Sbjct: 136 LGLLLIEAILGYDYPEIQGPVL 157
Score = 27.6 bits (62), Expect = 9.4
Identities = 4/25 (16%), Positives = 16/25 (64%)
Query: 19 IIIIIIIIIIIIIIIIIIIIIINRI 43
I ++ +I++++ +++ I+ R+
Sbjct: 152 IQGPVLAAALILLLLNLLVDILQRL 176
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 30.7 bits (69), Expect = 2.2
Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 31/118 (26%)
Query: 255 PATQNNKPDESTVPAASSLPS--------EPEDTSSLQSLPSEKSLDDGSIGNNHTDDVT 306
PA+ ++ SS S +P S Q+L D T
Sbjct: 2989 PASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTL--------------WPPDDT 3034
Query: 307 NDSVMTLGAESDTNTNDL-------PDPSTPTNNPPAPSQVEMDGADDNAS--AEPPL 355
DS +SD+ +DL P+P P + P P+ E + +S PPL
Sbjct: 3035 EDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEAGARESPSSQFGPPPL 3092
>gnl|CDD|206207 pfam14037, YoqO, YoqO-like protein. The YoqO-like protein family
includes the B. subtilis YoqO protein, which is
functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are approximately 120 amino acids in length.
There are two completely conserved residues (I and Y)
that may be functionally important.
Length = 117
Score = 28.8 bits (65), Expect = 2.3
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 6 KHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKI 63
K Y + L III I +I+I+ I +++ ++ IPI GW KI
Sbjct: 49 KTYSRKSL--IIIGIEFVILILTIPFLLLKGQDQMDSIPI-----FQGW---LTIAKI 96
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 30.0 bits (68), Expect = 2.3
Identities = 13/73 (17%), Positives = 19/73 (26%), Gaps = 6/73 (8%)
Query: 340 VEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESV-SESEAPVT 398
E+D PP + E +AA P + + + P
Sbjct: 116 SEID-----TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPE 170
Query: 399 KEGEQKVPVEPTA 411
K P P A
Sbjct: 171 PAPAAKPPPTPVA 183
>gnl|CDD|234881 PRK00972, PRK00972, tetrahydromethanopterin S-methyltransferase
subunit E; Provisional.
Length = 292
Score = 29.9 bits (68), Expect = 2.3
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 13 LWFIII--IIIIIIIIIIIIIIIIIIIIIINRI 43
W I+ I+ II+ +II++I+IIINR
Sbjct: 247 GWRTIVFNIVGGGWGAIIVGLIIVLILIIINRK 279
>gnl|CDD|219354 pfam07264, EI24, Etoposide-induced protein 2.4 (EI24). This family
contains a number of eukaryotic etoposide-induced 2.4
(EI24) proteins approximately 350 residues long as well
as bacterial CysZ proteins (formerly known as DUF540).
In cells treated with the cytotoxic drug etoposide, EI24
is induced by p53. It has been suggested to play an
important role in negative cell growth control.
Length = 205
Score = 29.5 bits (67), Expect = 2.4
Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 28/126 (22%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGKDAHLN 73
W + I+ ++++++++ + +++ +I ++ +L +K++ R H
Sbjct: 57 WLLWILAVLLLLVLLWFLFVVVASLIAA-----------PFWTPDLAEKVEKR----HYP 101
Query: 74 HEELVQLMKWKQTLNYLVKVNTPRAVMMETKKAFKKLPNLELALSALSNLKGVGTTLASA 133
E + PR++ KK L L L L + VG LA
Sbjct: 102 DLEPALGG------------SLPRSLADSLKKLLLFLL-FLLLLLPLYFIPVVGLVLAPV 148
Query: 134 LLAAAT 139
L
Sbjct: 149 LWFLLN 154
>gnl|CDD|220507 pfam09991, DUF2232, Predicted membrane protein (DUF2232). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 290
Score = 29.9 bits (68), Expect = 2.4
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 8 YHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
K +I + ++ I+I + I + I+ I I
Sbjct: 78 LKKKKSPERTLIAGTLAFLLGILIAFALYIKFLGINLINQVIEMI 122
>gnl|CDD|177117 MTH00042, ND3, NADH dehydrogenase subunit 3; Validated.
Length = 116
Score = 28.8 bits (65), Expect = 2.4
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 22 IIIIIIIIIIIIIIIIIIINRIPIHS 47
+I ++II+I+ ++++ + +P S
Sbjct: 4 LIFFLLIILILTSLLLLAGHFLPSRS 29
Score = 27.6 bits (62), Expect = 5.5
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 18 IIIIIIIIIIIIIIIIIIIIIIINRIP 44
+I ++II+I+ ++++ + +R P
Sbjct: 4 LIFFLLIILILTSLLLLAGHFLPSRSP 30
>gnl|CDD|215966 pfam00517, GP41, Retroviral envelope protein. This family includes
envelope protein from a variety of retroviruses. It
includes the GP41 subunit of the envelope protein
complex from human and simian immunodeficiency viruses
(HIV and SIV) which mediate membrane fusion during viral
entry. The family also includes bovine immunodeficiency
virus, feline immunodeficiency virus and Equine
infectious anaemia (EIAV). The family also includes the
Gp36 protein from mouse mammary tumour virus (MMTV) and
human endogenous retroviruses (HERVs).
Length = 204
Score = 29.7 bits (67), Expect = 2.4
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
+ +I I I+I++III++ I+ ++
Sbjct: 154 ISYIKIGILILLIIIVLRILPGVLRNCRR 182
Score = 28.9 bits (65), Expect = 4.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIII 38
W I I I+I++III++ I+ ++
Sbjct: 153 WISYIKIGILILLIIIVLRILPGVL 177
>gnl|CDD|227120 COG4781, COG4781, Membrane domain of membrane-anchored
glycerophosphoryl diester phosphodiesterase [Energy
production and conversion].
Length = 340
Score = 30.1 bits (68), Expect = 2.4
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 5 KKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
KK+ +I++ II+++ +II I++ ++++I
Sbjct: 211 KKNVFFLAWKLFLILLKIILLLSLIISGILLAQDLVDKI 249
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit.
Members of this protein family are the SecY component of
the SecYEG translocon, or protein translocation pore,
which is driven by the ATPase SecA. This model does not
discriminate bacterial from archaeal forms [Protein
fate, Protein and peptide secretion and trafficking].
Length = 410
Score = 29.9 bits (68), Expect = 2.5
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIII---INRIPIHS 47
L + + ++ +I II+ +++ + +IPI S
Sbjct: 192 LISFLQNLPFLLYLIATIIVFAVVVFVQQARRKIPIQS 229
>gnl|CDD|227703 COG5416, COG5416, Uncharacterized integral membrane protein
[Function unknown].
Length = 98
Score = 28.5 bits (64), Expect = 2.5
Identities = 7/21 (33%), Positives = 16/21 (76%)
Query: 13 LWFIIIIIIIIIIIIIIIIII 33
W +II+ I+I+++++I +I
Sbjct: 23 QWTVIIVGILILLLLLIFAVI 43
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 30.0 bits (68), Expect = 2.5
Identities = 6/35 (17%), Positives = 22/35 (62%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNI 49
+++ I+ +++ +I ++II++++ IP + +
Sbjct: 139 YLLGKILGDLLVGLIQLLIILLLLFGLGIPFGNLL 173
Score = 29.6 bits (67), Expect = 2.8
Identities = 4/26 (15%), Positives = 15/26 (57%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIII 37
I+ +++ +I ++II++++
Sbjct: 138 KYLLGKILGDLLVGLIQLLIILLLLF 163
Score = 28.8 bits (65), Expect = 4.5
Identities = 6/21 (28%), Positives = 16/21 (76%)
Query: 14 WFIIIIIIIIIIIIIIIIIII 34
F+II +++ I++I+++ +I
Sbjct: 2 SFLIITLLLPILLILLLGLIF 22
>gnl|CDD|223674 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 317
Score = 29.8 bits (68), Expect = 2.5
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIII 38
L +II ++ I + I+ + ++
Sbjct: 2 LKYIIKRLLQAIPTLFIVSTLTFFLL 27
Score = 29.0 bits (66), Expect = 5.2
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIP 44
II ++ I + I+ + ++ IP
Sbjct: 2 LKYIIKRLLQAIPTLFIVSTLTFFLLRLIP 31
>gnl|CDD|216802 pfam01944, DUF95, Integral membrane protein DUF95. Members of
this family have several predicted transmembrane
regions. The function of this family is unknown.
Length = 162
Score = 29.1 bits (66), Expect = 2.5
Identities = 4/25 (16%), Positives = 14/25 (56%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIIIIN 41
+ + +++ + I + + I+I+ N
Sbjct: 49 LKVALLMFALGITLGLPSILILFFN 73
Score = 27.9 bits (63), Expect = 6.2
Identities = 4/27 (14%), Positives = 14/27 (51%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIII 36
++L +++ + I + + I+I+
Sbjct: 46 TNNLKVALLMFALGITLGLPSILILFF 72
>gnl|CDD|223670 COG0597, LspA, Lipoprotein signal peptidase [Cell envelope
biogenesis, outer membrane / Intracellular trafficking
and secretion].
Length = 167
Score = 29.1 bits (66), Expect = 2.5
Identities = 5/21 (23%), Positives = 14/21 (66%)
Query: 11 HHLWFIIIIIIIIIIIIIIII 31
WF++I +++I+ ++ +I
Sbjct: 68 QSGWFLLIALLVILGLLYFLI 88
>gnl|CDD|151331 pfam10882, DUF2679, Protein of unknown function (DUF2679). This
family of proteins with unknown function appear to be
restricted to Clostridium spp.
Length = 286
Score = 29.7 bits (67), Expect = 2.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 4 NKKHYHKHHLWFIIIIIIIIIIIIIIIIIII 34
+ K +FI II I+I+II +I I
Sbjct: 168 KNVNLSKDKRFFIPFIITSILILIITLIPFI 198
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 30.2 bits (67), Expect = 2.6
Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 15/183 (8%)
Query: 215 LEDIRSLSSNNTNNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLP 274
++ + + ++ + T + E L+P +P + A +
Sbjct: 237 TRELEPQDDSEDDYVIPDAEIISSPTLEVTAPKEVEQPLQP-----EPVDEETVAETKAE 291
Query: 275 SEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNP 334
EP+ T ++++ P+ + T T S T P T P
Sbjct: 292 EEPQPTQTVETKPTSAPESTVEENLPEINQPTQAVQPTSETISTT-----PVEPTDQLKP 346
Query: 335 PAPSQV--EMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESVSE 392
Q+ E+ + E P KK L E + + + N EPE E
Sbjct: 347 KEVDQIQEELKKTKEIEVEELPTKKNDLVEINFDDLEELKFELV---QTNQEKEPEKAVE 403
Query: 393 SEA 395
+ A
Sbjct: 404 NWA 406
>gnl|CDD|129470 TIGR00374, TIGR00374, conserved hypothetical protein. This model
is built on a superfamily of proteins in the Archaea and
in Aquifex aeolicus. The authenticity of homology can be
seen in the presence of motifs in the alignment that
include residues relatively rare among these sequences,
even though the alignment includes long regions of
low-complexity hydrophobic sequences. One apparent
fusion protein contains a Glycos_transf_2 region in the
N-terminal half of the protein and a region homologous
to this superfamily in the C-terminal region [Unknown
function, General].
Length = 319
Score = 30.0 bits (68), Expect = 2.6
Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIII---IIINRI 43
+ I +I+I+I +++ +II+ I I+ +I
Sbjct: 137 PKLFIYLILILITLLLFLIILYIFGNKKILQKI 169
>gnl|CDD|226354 COG3833, MalG, ABC-type maltose transport systems, permease
component [Carbohydrate transport and metabolism].
Length = 282
Score = 29.9 bits (68), Expect = 2.6
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 1 MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIII 37
M+ ++K K L +++II+ IIII ++ +++
Sbjct: 1 MMMSQKKKRKLRLLLTYLLLIILAIIIIFPLLWVVLT 37
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein).
This family consists of several brain acid soluble
protein 1 (BASP1) or neuronal axonal membrane protein
NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 29.4 bits (65), Expect = 2.8
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 336 APSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESVSESEA 395
A E +G + A+A+ K + + E E +A+ PE+ A+ P + EA
Sbjct: 67 ANKTEEKEGEKEAAAAKEEAPKAEPEKTEGAAEAKAEPPKASDPEQEPAAAPGPAAGGEA 126
Query: 396 PVTKEGEQKVPVEPTAPVPVESKTE 420
P E + P E AP E K++
Sbjct: 127 PKASEASSQ-PAESAAPAKEEEKSK 150
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 29.9 bits (68), Expect = 2.8
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGKDAHLNH 74
+I++ I + ++I +I ++ ++ S + E K I +
Sbjct: 296 TLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQS--FLVETIKGI----ETVKALA 349
Query: 75 EELVQLMKWKQTLNYLVKVN 94
E +W L V +
Sbjct: 350 AEPRFRSQWDNRLAKQVNIG 369
Score = 29.5 bits (67), Expect = 3.7
Identities = 6/38 (15%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 15 FIIIIIIIIII-------IIIIIIIIIIIIIIINRIPI 45
F +I + ++ + I++ I + ++I +I + +
Sbjct: 280 FALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLL 317
>gnl|CDD|224618 COG1704, LemA, Uncharacterized conserved protein [Function
unknown].
Length = 185
Score = 29.2 bits (66), Expect = 2.8
Identities = 5/26 (19%), Positives = 16/26 (61%)
Query: 19 IIIIIIIIIIIIIIIIIIIIIINRIP 44
+ +II+ +I+I++++ + N +
Sbjct: 1 LRRFLIILAVIVILLLLAVGGYNGLV 26
>gnl|CDD|217178 pfam02674, Colicin_V, Colicin V production protein. Colicin V
production protein is required in E. Coli for colicin V
production from plasmid pColV-K30. This protein is
coded for in the purF operon.
Length = 145
Score = 29.0 bits (66), Expect = 2.9
Identities = 6/44 (13%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
II ++I +++++I ++ +++ + +S +G
Sbjct: 54 LSPALAAIIAFLLIFLLVLLIGSLLGVLLRKLV----KLSGLGG 93
>gnl|CDD|234335 TIGR03732, lanti_perm_MutE, lantibiotic protection ABC transporter
permease subunit, MutE/EpiE family. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family is largely restricted to
gallidermin-family lantibiotic cassettes, but also
include orphan transporter cassettes in species that
lack candidate lantibiotic precursor and synthetase
genes. In most species, this subunit is paralogous to an
adjacent gene, modeled separately.
Length = 241
Score = 29.6 bits (67), Expect = 2.9
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRIPI 45
++I I ++I II+ I +++I +I I
Sbjct: 91 LVIAIYLLISCIILFIGLVLIGFVIPPSNI 120
Score = 28.4 bits (64), Expect = 6.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNIS 50
+W I++I I ++I II+ I +++I IP NIS
Sbjct: 83 KKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPS-NIS 121
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 29.9 bits (67), Expect = 3.0
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 349 ASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESVSESEAPVTKEGEQKVPVE 408
+ A P K K EP+ + AKPE GA E S + AP EQ+ PV
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPD--RHPGPAKPEAPGARPAELPSPASAPTP---EQQPPVA 437
Query: 409 PTAPVPVESKTETLR 423
+AP+P + R
Sbjct: 438 RSAPLPPSPQASAPR 452
>gnl|CDD|219993 pfam08733, PalH, PalH/RIM21. PalH (also known as RIM21) is a
transmembrane protein required for proteolytic cleavage
of Rim101/PacC transcription factors which are activated
by C terminal proteolytic processing. Rim101/PacC family
proteins play a key role in pH-dependent responses and
PalH has been implicated as a pH sensor.
Length = 346
Score = 29.6 bits (67), Expect = 3.0
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 8 YHKHHLWFI---IIIIIIIIIIIIIIIIIIIIIIIIN 41
K L + II + ++ I++I++ ++ I+ I N
Sbjct: 251 ISKKKLCYSYKKIIPLALLTILLILLPVVFFILDISN 287
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 30.0 bits (68), Expect = 3.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 6 KHYHKHHLWFIIIIIIIIIIIIIIIIIIII 35
K Y + WF +I +I II II+ II +
Sbjct: 133 KGYGEAEFWFALIKVIAIIGFIIVGFIIPL 162
Score = 28.5 bits (64), Expect = 7.5
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINR 42
F +I +I II II+ II +
Sbjct: 140 FWFALIKVIAIIGFIIVGFIIPLSGGGP 167
>gnl|CDD|213360 cd12826, EcCorA_ZntB-like_u1, uncharacterized bacterial subfamily
of the Escherichia coli CorA-Salmonella typhimurium ZntB
family. A uncharacterized subfamily of the Escherichia
coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like)
family of the MIT superfamily of essential membrane
proteins involved in transporting divalent cations
(uptake or efflux) across membranes. The
EcCorA-ZntB_like family includes the Mg2+ transporters
Escherichia coli and Salmonella typhimurium CorAs, which
can also transport Co2+, and Ni2+. Structures of the
intracellular domain of EcCorA-ZntB_like family members,
Vibrio parahaemolyticus and Salmonella typhimurium ZntB,
form funnel-shaped homopentamers, the tip of the funnel
is formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA. Natural
variants such as GVN and GIN, as in some ZntB family
proteins, may be associated with the transport of
different divalent cations, such as zinc and cadmium.
The functional diversity of MIT transporters may also be
due to minor structural differences regulating gating,
substrate selection, and transport.
Length = 281
Score = 29.5 bits (67), Expect = 3.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 16 IIIIIIIIIIIIIIIII 32
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.5 bits (67), Expect = 3.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 17 IIIIIIIIIIIIIIIII 33
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.5 bits (67), Expect = 3.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 18 IIIIIIIIIIIIIIIII 34
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.5 bits (67), Expect = 3.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 19 IIIIIIIIIIIIIIIII 35
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.5 bits (67), Expect = 3.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 20 IIIIIIIIIIIIIIIII 36
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.5 bits (67), Expect = 3.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 21 IIIIIIIIIIIIIIIII 37
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.5 bits (67), Expect = 3.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 22 IIIIIIIIIIIIIIIII 38
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.5 bits (67), Expect = 3.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 23 IIIIIIIIIIIIIIIII 39
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.5 bits (67), Expect = 3.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 24 IIIIIIIIIIIIIIIII 40
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
Score = 29.5 bits (67), Expect = 3.4
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 15 FIIIIIIIIIIIIIIII 31
++II+ I+I++I II
Sbjct: 258 PVVIILSILIVVIEIIY 274
>gnl|CDD|235692 PRK06076, PRK06076, NADH:ubiquinone oxidoreductase subunit H;
Provisional.
Length = 322
Score = 29.8 bits (68), Expect = 3.1
Identities = 4/28 (14%), Positives = 19/28 (67%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINR 42
+++I++ ++I++++++ + +I R
Sbjct: 8 LLLLILLKAVVILVVVLLCVAFLIWFER 35
Score = 28.2 bits (64), Expect = 8.3
Identities = 4/29 (13%), Positives = 17/29 (58%)
Query: 8 YHKHHLWFIIIIIIIIIIIIIIIIIIIII 36
L +I++ ++I++++++ + +I
Sbjct: 3 LFGPDLLLLILLKAVVILVVVLLCVAFLI 31
>gnl|CDD|218916 pfam06157, DUF973, Protein of unknown function (DUF973). This
family consists of several hypothetical archaeal
proteins of unknown function.
Length = 283
Score = 29.7 bits (67), Expect = 3.2
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 13 LWFIIIIIIIIIIIII---------IIIIIIIIIIIINRIPIHSNISNIG-WYQNELPK 61
+ +IIII ++ I+ II+ I I+ +I I I I IG Y L K
Sbjct: 91 IVGYVIIIIGALLTIVGLLSLVGGVIILFIGGILGLIGYILIGLGIYRIGEIYNENLVK 149
Score = 28.9 bits (65), Expect = 5.1
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 17/50 (34%)
Query: 13 LWFIIIIIIIIIIIIIII-----------------IIIIIIIIIINRIPI 45
L+ II I+ I III+I I ++II +++ I
Sbjct: 14 LYLIIAEILGFIGIIIVISVSSSIASVILNGLIVSIFLLIIGLVLLIIGF 63
>gnl|CDD|233744 TIGR02138, phosphate_pstC, phosphate ABC transporter, permease
protein PstC. The typical operon for the high affinity
inorganic phosphate ABC transporter encodes an
ATP-binding protein, a phosphate-binding protein, and
two permease proteins. This family consists of one of
the two permease proteins, PstC, which is homologous to
PstA (TIGR00974). In the model bacterium Escherichia
coli, this transport system is induced when the
concentration of extrallular inorganic phosphate is
low. A constitutive, lower affinity transporter
operates otherwise [Transport and binding proteins,
Anions].
Length = 295
Score = 29.5 bits (67), Expect = 3.2
Identities = 7/54 (12%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG------WYQNELPKK 62
+++ +II++++++I++ ++ IP + W P +
Sbjct: 3 IFKGLLLFSAVIIVLVLLLIVLFLLYEAIPAFEKNGILNFLTGTVWDPGSGPVQ 56
>gnl|CDD|237817 PRK14791, PRK14791, lipoprotein signal peptidase; Provisional.
Length = 146
Score = 28.8 bits (65), Expect = 3.3
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Query: 1 MIQNKKHYHKHHLWFIIIIIIIIIIIIIIII 31
++QNK L+ I+I II+I+ +I II
Sbjct: 51 ILQNKT------LFLILITIIVILGLIYYII 75
>gnl|CDD|234205 TIGR03426, shape_MreD, rod shape-determining protein MreD. Members
of this protein family are the MreD protein of bacterial
cell shape determination. Most rod-shaped bacteria
depend on MreB and RodA to achieve either a rod shape or
some other non-spherical morphology such as coil or
stalk formation. MreD is encoded in an operon with MreB,
and often with RodA and PBP-2 as well. It is highly
hydrophobic (therefore somewhat low-complexity) and
highly divergent, and therefore sometimes tricky to
discover by homology, but this model finds most examples
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 154
Score = 28.7 bits (65), Expect = 3.4
Identities = 8/63 (12%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 1 MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSN---------ISN 51
+ + + LW +II +++I+ +++ +I+ ++ + + N
Sbjct: 83 AASLFQRFRQFDLWQQALIIFLLLILGELLVFLILTLLGNAFFSLEYFWLFRLLPTLLLN 142
Query: 52 IGW 54
+ W
Sbjct: 143 LLW 145
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 29.8 bits (68), Expect = 3.4
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 3/97 (3%)
Query: 325 PDPSTPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGA 384
P S P P P + ++ A + + E+ +
Sbjct: 402 PPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLAS 461
Query: 385 SEPESVSESEAPVTKEGEQKVPVEPTAPVPVESKTET 421
P + +AP KE + T PV V+ +
Sbjct: 462 VRPAPSALEKAPAKKEA---YRWKATNPVEVKKEPVA 495
>gnl|CDD|223650 COG0577, SalY, ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms].
Length = 419
Score = 29.7 bits (66), Expect = 3.4
Identities = 5/41 (12%), Positives = 17/41 (41%)
Query: 7 HYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHS 47
+I++ +I+ +++ +I ++ PI +
Sbjct: 375 ALPILLSPLLILLALIVALLVGVIAGLLPARKAAKLDPIEA 415
Score = 29.3 bits (65), Expect = 4.0
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 1 MIQNKKHYHK---HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQN 57
+++N K K L I +I +I+ I I I+++ ++ R + +G +
Sbjct: 271 VLENLKSILKSIQLLLGVDKAIAVISLIVGAIGIYNILLVSVLERTREIGILKALGATRR 330
Query: 58 EL 59
E+
Sbjct: 331 EI 332
Score = 28.2 bits (62), Expect = 9.1
Identities = 5/48 (10%), Positives = 21/48 (43%)
Query: 8 YHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
+ + +I+ +I ++ I++ + + +++ + I S +
Sbjct: 330 REILLQFLLEALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALP 377
>gnl|CDD|216994 pfam02361, CbiQ, Cobalt transport protein. This family consists
of various cobalt transport proteins Most of which are
found in Cobalamin (Vitamin B12) biosynthesis operons.
In Salmonella the cbiN cbiQ (product CbiQ in this
family) and cbiO are likely to form an active cobalt
transport system.
Length = 217
Score = 29.2 bits (66), Expect = 3.4
Identities = 4/29 (13%), Positives = 20/29 (68%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
L ++++++++ ++ + ++III +++
Sbjct: 13 KLIWLLLLVLLAVLPPGPVGLLIIIALLL 41
Score = 28.5 bits (64), Expect = 5.3
Identities = 4/37 (10%), Positives = 22/37 (59%)
Query: 4 NKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
++ +W ++++++ ++ + ++III ++++
Sbjct: 6 HRLDPRVKLIWLLLLVLLAVLPPGPVGLLIIIALLLL 42
>gnl|CDD|234739 PRK00376, lspA, lipoprotein signal peptidase; Reviewed.
Length = 160
Score = 28.6 bits (65), Expect = 3.4
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 14 WFIIIIIIIIIIIIIIIII 32
WF I I I ++++ ++
Sbjct: 69 WFFTGIAIGISVVLVYLLY 87
>gnl|CDD|214442 MTH00160, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 335
Score = 29.4 bits (67), Expect = 3.4
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 32/75 (42%)
Query: 12 HLWFIII-----------------IIIIIIIIIIIIIIIIIIIIIIN------------- 41
H WF + I +I++ +I IIIIII++
Sbjct: 107 HFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAIIGAIGGLNQTS 166
Query: 42 --RIPIHSNISNIGW 54
+I +S+I+++GW
Sbjct: 167 LRKILAYSSINHLGW 181
Score = 29.0 bits (66), Expect = 5.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
LW I +I II + II++ I +N++ +N S
Sbjct: 192 LWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKK 231
>gnl|CDD|239486 cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family
of phosphatases and haloperoxidases. This subgroup,
which is specific to bacteria, lacks functional
characterization and may act as a membrane-associated
lipid phosphatase.
Length = 182
Score = 29.1 bits (66), Expect = 3.5
Identities = 5/38 (13%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 15 FIIIIIIIII---------IIIIIIIIIIIIIIIINRI 43
+ ++ I+++I+ I+I+++ ++R+
Sbjct: 114 LYGFLAYLLARRLPRRRVRILLLILAAILILLVGLSRL 151
>gnl|CDD|219520 pfam07694, 5TM-5TMR_LYT, 5TMR of 5TMR-LYT. This entry represents
the transmembrane region of the 5TM-LYT (5TM Receptors
of the LytS-YhcK type).
Length = 169
Score = 28.7 bits (65), Expect = 3.5
Identities = 4/32 (12%), Positives = 15/32 (46%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
++ I + +I++ + + ++II +
Sbjct: 138 DLALELVSTIALPMILVNSLGTALFLLIIRDV 169
Score = 28.0 bits (63), Expect = 6.6
Identities = 8/50 (16%), Positives = 25/50 (50%)
Query: 1 MIQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNIS 50
+I + K W + ++I ++ I+ +++I+++ + + S I+
Sbjct: 99 LIHRRLKRRKKISWLVALLIGLLAEILQMLLILLLAKPFDLALELVSTIA 148
Score = 27.6 bits (62), Expect = 8.4
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
L ++ I + +I++ + + ++II +
Sbjct: 137 FDLALELVSTIALPMILVNSLGTALFLLIIRDV 169
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family
contains Sodium, Potassium, Calcium ion channels. This
family is 6 transmembrane helices in which the last two
helices flank a loop which determines ion selectivity.
In some sub-families (e.g. Na channels) the domain is
repeated four times, whereas in others (e.g. K
channels) the protein forms as a tetramer in the
membrane. A bacterial structure of the protein is known
for the last two helices but is not the Pfam family due
to it lacking the first four helices.
Length = 194
Score = 29.2 bits (66), Expect = 3.6
Identities = 6/39 (15%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 5 KKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
K+ Y + W I+ ++++ ++ +I+ ++ + R+
Sbjct: 24 KRKYFRS-PWNILDFLVVLPSLVSLILFLLGEDSGLLRV 61
>gnl|CDD|218142 pfam04549, CD47, CD47 transmembrane region. This family
represents the transmembrane region of CD47 leukocyte
antigen.
Length = 156
Score = 28.8 bits (65), Expect = 3.6
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQ 56
I ++ I + I +I+++ + I NI +G Q
Sbjct: 31 KIYLLYAIGLWITLIVLVGQYLFIPTEYSFINIIGLGLIQ 70
Score = 28.4 bits (64), Expect = 4.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 16 IIIIIIIIIIIIIIIIIIIIIIIIINRI 43
I+I+I +II II++ I + N++
Sbjct: 1 ILIVIFLIIYIILLWGQIGTLTFKYNKV 28
>gnl|CDD|216842 pfam02009, Rifin_STEVOR, Rifin/stevor family. Several multicopy
gene families have been described in Plasmodium
falciparum, including the stevor family of subtelomeric
open reading frames and the rif interspersed repetitive
elements. Both families contain three predicted
transmembrane segments. It has been proposed that stevor
and rif are members of a larger superfamily that code
for variant surface antigens.
Length = 290
Score = 29.2 bits (66), Expect = 3.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINR 42
I I I+II+++++II +I R
Sbjct: 249 IYASAIAILIIVLVMLIIYLILR 271
Score = 29.2 bits (66), Expect = 4.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 16 IIIIIIIIIIIIIIIIIIIII 36
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 4.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 17 IIIIIIIIIIIIIIIIIIIII 37
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 4.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 18 IIIIIIIIIIIIIIIIIIIII 38
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
Score = 29.2 bits (66), Expect = 4.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 19 IIIIIIIIIIIIIIIIIIIII 39
I I I+II+++++II +I
Sbjct: 249 IYASAIAILIIVLVMLIIYLI 269
>gnl|CDD|220179 pfam09323, DUF1980, Domain of unknown function (DUF1980).
Members of this family are found in a set of
prokaryotic hypothetical proteins. Their exact
function, has not, as yet, been defined.
Length = 179
Score = 28.9 bits (65), Expect = 3.7
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 2 IQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISN 51
+ KK H H ++ +I II ++I + + ++ S+I+
Sbjct: 54 FKTKKKKHSHEESKPKKLVSYLIFIIPLLIGFLFPPVSLD-----SSIAA 98
>gnl|CDD|112398 pfam03579, SHP, Small hydrophobic protein. The small hydrophobic
integral membrane protein, SH (previously designated
1A) is found to have a variety of glycosylated forms.
This protein is a component of the mature virion.
Length = 64
Score = 27.2 bits (60), Expect = 3.8
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISN 51
W ++ +I+ II +III I+I I+N++ ++ N
Sbjct: 14 FWPYFTLVHMILTIISFLIIISIMIAILNKLCELNDFHN 52
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 29.6 bits (66), Expect = 3.9
Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 8/160 (5%)
Query: 222 SSNNTNNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTS 281
+ + T G+ T N + + + T +N ++ P PS+ +
Sbjct: 194 TPQSQPATQGHQTATANQRLSSTEPVGTQGT---TTSSNPEPQTEPP-----PSQRGPSG 245
Query: 282 SLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVE 341
S Q PS S D + G+ + ++ P P+T P+
Sbjct: 246 SPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRP 305
Query: 342 MDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEK 381
+S + P + + + + KP
Sbjct: 306 TATTQSGSSPPHSSPPGVQANPTTQNLVDCKELDPPKPNS 345
>gnl|CDD|216055 pfam00674, DUP, DUP family. This family consists of several
yeast proteins of unknown functions. Swiss-prot
annotates these as belonging to the DUP family. Several
members of this family contain an internal duplication
of this region.
Length = 108
Score = 28.0 bits (63), Expect = 3.9
Identities = 6/33 (18%), Positives = 19/33 (57%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
H +++ +++++II+++++I RI
Sbjct: 5 HDNVVFSALLVFSLLVLLIILLMVVISFYNKRI 37
>gnl|CDD|215648 pfam00003, 7tm_3, 7 transmembrane sweet-taste receptor of 3 GCPR.
This is a domain of seven transmembrane regions that
forms the C-terminus of some subclass 3
G-coupled-protein receptors. It is often associated with
a downstream cysteine-rich linker domain, NCD3G
pfam07562, which is the human sweet-taste receptor, and
the N-terminal domain, ANF_receptor pfam01094. The seven
TM regions assemble in such a way as to produce a
docking pocket into which such molecules as cyclamate
and lactisole have been found to bind and consequently
confer the taste of sweetness.
Length = 238
Score = 29.1 bits (66), Expect = 3.9
Identities = 4/31 (12%), Positives = 15/31 (48%)
Query: 4 NKKHYHKHHLWFIIIIIIIIIIIIIIIIIII 34
+ I++ + ++ +II +I +++
Sbjct: 93 PRLKSLPKGQLLIVLGLTLVQVIICVIWLVV 123
>gnl|CDD|225965 COG3431, COG3431, Predicted membrane protein [Function unknown].
Length = 142
Score = 28.3 bits (64), Expect = 3.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
FII I++ ++II + II++I + +
Sbjct: 20 FIIDILLFVLIIGLFIIMLIELFTMF 45
Score = 28.3 bits (64), Expect = 4.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
I II I++ ++II + II++I +
Sbjct: 15 VKVLIFIIDILLFVLIIGLFIIMLIELFT 43
Score = 28.0 bits (63), Expect = 5.1
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 11 HHLWF------IIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNI 49
L ++I II I++ ++II + II++I S +
Sbjct: 5 DALRLFEKLVVKVLIFIIDILLFVLIIGLFIIMLIELFTMFFSLL 49
Score = 27.6 bits (62), Expect = 7.4
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIIIIIIIIIIII 40
+ + ++I II I++ ++II + II++I +
Sbjct: 10 FEKLVVKVLIFIIDILLFVLIIGLFIIMLIEL 41
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 478
Score = 29.6 bits (67), Expect = 4.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 14 WFIIIIIIIIIIIIIIIIIII 34
WF I I+ II II+ II+
Sbjct: 146 WFSSIKILAIIGFIILSIILN 166
>gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism].
Length = 461
Score = 29.6 bits (67), Expect = 4.1
Identities = 6/27 (22%), Positives = 18/27 (66%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIII 40
W + I+ I++II++++I ++ ++
Sbjct: 434 WKVGFILSIVLIIVLLVIGLLWWPVLG 460
Score = 28.4 bits (64), Expect = 7.8
Identities = 6/24 (25%), Positives = 18/24 (75%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIII 38
FI+ I++II++++I ++ ++ +
Sbjct: 438 FILSIVLIIVLLVIGLLWWPVLGL 461
>gnl|CDD|147008 pfam04639, Baculo_E56, Baculoviral E56 protein, specific to ODV
envelope. This family represents the E56 protein, which
is localises to the occlusion derived virus (ODV)
envelope, but not to the budded virus (BV) envelope.
Length = 308
Score = 29.2 bits (66), Expect = 4.1
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 22 IIIIIIIIIIIIIIIIIIINRI 43
II++I +++++ I +I R+
Sbjct: 282 IILVIGGVLLLVFIGYVIFKRL 303
Score = 28.8 bits (65), Expect = 5.4
Identities = 5/28 (17%), Positives = 17/28 (60%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINR 42
+ II++I +++++ I +I ++ +
Sbjct: 279 LLPIILVIGGVLLLVFIGYVIFKRLMKK 306
Score = 28.0 bits (63), Expect = 8.8
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 13 LWFIIIIIIIIIIIIIIIIIII 34
L II++I +++++ I +I
Sbjct: 279 LLPIILVIGGVLLLVFIGYVIF 300
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 29.6 bits (67), Expect = 4.1
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 22 IIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGK 68
I+ I+II ++ +++ ++ R P NI I WY L I GK
Sbjct: 195 ILFILIIYLLYLLLSLLTGQRGPFVLNILFILWYYI-LRNYISWIGK 240
>gnl|CDD|226404 COG3887, COG3887, Predicted signaling protein consisting of a
modified GGDEF domain and a DHH domain [Signal
transduction mechanisms].
Length = 655
Score = 29.6 bits (67), Expect = 4.2
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 5 KKHYHKHHLWFIIIIIIIIIIIIIIII-----IIIIIIIII 40
K YHK L +I + +I II+II+ + I +++
Sbjct: 2 NKFYHKRLLSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLL 42
>gnl|CDD|190398 pfam02714, DUF221, Domain of unknown function DUF221. This
family consists of hypothetical transmembrane proteins
none of which have any function, the aligned region is
at 538 residues at maximum length.
Length = 325
Score = 29.0 bits (66), Expect = 4.3
Identities = 6/39 (15%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
I+ +++ ++II I + + ++ SN+ +
Sbjct: 53 RLIVNLLLFLLIIFWAIPVAFVGLL--------SNLETL 83
>gnl|CDD|224233 COG1314, SecG, Preprotein translocase subunit SecG [Intracellular
trafficking and secretion].
Length = 86
Score = 27.2 bits (61), Expect = 4.3
Identities = 5/24 (20%), Positives = 20/24 (83%)
Query: 19 IIIIIIIIIIIIIIIIIIIIIINR 42
++ ++++I+I++ + +II++++ R
Sbjct: 1 MMTLLLVILIVVALALIILVLLQR 24
>gnl|CDD|109985 pfam00950, ABC-3, ABC 3 transport family.
Length = 258
Score = 29.1 bits (66), Expect = 4.4
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 23 IIIIIIIIIIIIIIIIIINR 42
+I I II II++++++ +
Sbjct: 127 LIQIAIITAIILLLLLLFWK 146
>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism].
Length = 265
Score = 29.2 bits (66), Expect = 4.4
Identities = 3/31 (9%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 13 LWFIIIIIIIIIIII---IIIIIIIIIIIII 40
+ I+++I+ ++ ++ + ++++++ I+
Sbjct: 7 ITAIVLLILFLLALLVGGLYFALLVLLLAIL 37
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 28.4 bits (62), Expect = 4.4
Identities = 21/71 (29%), Positives = 28/71 (39%)
Query: 341 EMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESVSESEAPVTKE 400
+ +G D + E + E E E E E +PE+ G EPE E E E
Sbjct: 54 DTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPE 113
Query: 401 GEQKVPVEPTA 411
E + EP A
Sbjct: 114 PEPEPEPEPGA 124
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 29.6 bits (66), Expect = 4.4
Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 355 LKKTKLSEPENEVANNGESSEAAKPEKNGASEPESVSESEAPVTKEGEQKVPVEPTAPVP 414
L K ++E E+ GE E E S EA E E K E +P
Sbjct: 630 LSKGDVAEAEHTGERTGEEGE---RPTEAEGENGEESGGEAEQEGETETKGENESEGEIP 686
Query: 415 VESKTET 421
E K E
Sbjct: 687 AERKGEQ 693
>gnl|CDD|224945 COG2034, COG2034, Predicted membrane protein [Function unknown].
Length = 85
Score = 27.2 bits (61), Expect = 4.5
Identities = 5/24 (20%), Positives = 18/24 (75%)
Query: 19 IIIIIIIIIIIIIIIIIIIIIINR 42
+ II +++ +I++I+ +++ ++ R
Sbjct: 62 MAIISVVLALILMILWLLLFLLGR 85
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 29.2 bits (66), Expect = 4.5
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 19/99 (19%)
Query: 58 ELPKKIKARGKDAHLNHEELVQ-----LMKWKQTLNYLVKVNTPRAVMMETKKAFKK--- 109
EL ++A+ A ELV+ + LN V V+ A+ + A
Sbjct: 11 ELAALLRAKELSA----VELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLA 66
Query: 110 -------LPNLELALSALSNLKGVGTTLASALLAAATPE 141
L + +A+ + G+ TT S L P
Sbjct: 67 AGEPLGPLAGVPIAVKDNIDTAGLPTTAGSKALEDYVPP 105
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 274
Score = 29.2 bits (66), Expect = 4.5
Identities = 4/39 (10%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 13 LWFIIIIIIII--------IIIIIIIIIIIIIIIIINRI 43
L ++ I++ ++++ I+ ++I++ ++ +
Sbjct: 126 LATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKK 164
Score = 28.4 bits (64), Expect = 6.2
Identities = 5/40 (12%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 13 LWFIIIIIIIIIIIII---------IIIIIIIIIIIINRI 43
L+F + ++ I++ +++ I+ ++I+++ +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAV 160
>gnl|CDD|203274 pfam05552, TM_helix, Conserved TM helix. This alignment
represents a conserved transmembrane helix as well as
some flanking sequence. It is often found in
association with pfam00924.
Length = 53
Score = 26.6 bits (60), Expect = 4.5
Identities = 6/31 (19%), Positives = 19/31 (61%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
L ++ +I I+I+++ +I I+ ++ ++
Sbjct: 12 LAYLPNLIAAILILLVGWLIAKIVRRLVTKL 42
>gnl|CDD|220321 pfam09624, DUF2393, Protein of unknown function (DUF2393). The
function of this protein is unknown. It is always found
as part of a two-gene operon with IPR013416, a protein
that appears to span the membrane seven times. It has
so far been found in the bacteria Nostoc sp. PCC 7120,
Agrobacterium tumefaciens, Rhizobium meliloti, and
Gloeobacter violaceus.
Length = 149
Score = 28.4 bits (64), Expect = 4.7
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIII 36
L +II II++I+I I
Sbjct: 18 LALSLIIASIILLILIPFFGYKWI 41
Score = 27.7 bits (62), Expect = 6.6
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISN 51
K + +II II++I+I I + P + S
Sbjct: 14 KKKSLALSLIIASIILLILIPFFGYKWIDKYTKKPELTLTST 55
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 29.2 bits (65), Expect = 4.7
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 207 AAELKPELLEDIRSLSSNNTNNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDEST 266
A + +++ ++ L N+N NGNS+ + + + S L P +P+ +
Sbjct: 795 AGSKRKKVVSNVGGLMPRNSNMRNGNSSIPPS------NNMGNGSGLVP-----RPNLNM 843
Query: 267 VPAASSLPSEPEDTSSLQSLPSEKSLDDGS 296
+ +PS + +S PS S+ +GS
Sbjct: 844 GNGSGLVPSSNLNMTSGLLPPSNLSIGNGS 873
>gnl|CDD|217379 pfam03125, Sre, C. elegans Sre G protein-coupled chemoreceptor.
Caenorhabditis elegans Sre proteins are candidate
chemosensory receptors. There are four main recognised
groups of such receptors: Odr-10, Sra, Sro, and Srg. Sre
(this family), Sra pfam02117 and Srb pfam02175 comprise
the Sra group. All of the above receptors are thought to
be G protein-coupled seven transmembrane domain
proteins. The existence of several different
chemosensory receptors underlies the fact that in spite
of having only 20-30 chemosensory neurones, C. elegans
detects hundreds of different chemicals, with the
ability to discern individual chemicals among
combinations.
Length = 363
Score = 29.2 bits (66), Expect = 4.7
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQ-NELPKKIK 64
L+ + ++ I++ II II +I+ + I R N WY+ E P++ +
Sbjct: 184 FLFNKLPVLFIVLPWIICNIISVIVYLFIRRY-------NQKWYKEIENPRRKR 230
Score = 28.4 bits (64), Expect = 7.8
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPI 45
++ +++ II++ I+ + +I
Sbjct: 250 GKRLVFVVLFIIVLCGSGILALSFDLIPLLRTF 282
>gnl|CDD|177210 MTH00153, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 511
Score = 29.1 bits (66), Expect = 4.7
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 13 LWFIIIII--IIIIIIIIIIIIIIIIIIIINRIPI--HSNISNIGWYQN 57
W +I I I +I I+ I II +I R + + S+I W QN
Sbjct: 447 SWNVISSIGSTISLISILFFIFIIWESMISKRPVLFSLNLSSSIEWLQN 495
>gnl|CDD|218735 pfam05760, IER, Immediate early response protein (IER). This
family consists of several eukaryotic immediate early
response (IER) 2 and 5 proteins. The role of IER5 is
unclear although it play an important role in mediating
the cellular response to mitogenic signals. Again,
little is known about the function of IER2 although it
is thought to play a role in mediating the cellular
responses to a variety of extracellular signals.
Length = 272
Score = 29.1 bits (65), Expect = 4.9
Identities = 24/163 (14%), Positives = 42/163 (25%), Gaps = 25/163 (15%)
Query: 242 QALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSIGNNH 301
Q + ++ P E +PA ++ P E + S + G
Sbjct: 63 QPMVPPPEQQPGAPRLHPPSGAEPPLPARAASPEEEQPAPEPAFYRPSVSEGFPASGERP 122
Query: 302 TDDVTNDSVMTLGAESDTNTN----------------DLPDPSTPTNNPP----APSQVE 341
T + D +T+ D S
Sbjct: 123 DATSTGSGQCSQTTVLDLDTHVVTTVESPYLHQDCPCQAEDGQPAPPAVCKRKRRSSGYG 182
Query: 342 MDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGA 384
D + + P K+ + + E E G SE A+ + G
Sbjct: 183 SDSGEASGFV--PCKRARREDFEPES---GGESEDAEEMETGN 220
>gnl|CDD|220694 pfam10326, 7TM_GPCR_Str, Serpentine type 7TM GPCR chemoreceptor
Str. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Str is a member of the
Str superfamily of chemoreceptors. Almost a quarter
(22.5%) of str and srj family genes and pseudogenes in
C. elegans appear to have been newly formed by gene
duplications since the species split. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 307
Score = 29.0 bits (66), Expect = 4.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIII 36
W I ++I+ I+ I III
Sbjct: 192 WKSFIGLLILTFIMGISFSIIIY 214
>gnl|CDD|227725 COG5438, COG5438, Predicted multitransmembrane protein [Function
unknown].
Length = 385
Score = 29.2 bits (66), Expect = 4.9
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 15 FIIIIIIIIII-----IIIIIIIIIIIIIIINRIPIHS 47
F IIII+I +I I++ II+ +II I ++
Sbjct: 162 FAIIIILIPLIINGFNPILVFIILCVIITAITLFMVNG 199
Score = 28.1 bits (63), Expect = 8.9
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 16/47 (34%)
Query: 15 FIIIIIIIIIIIII----------------IIIIIIIIIIIINRIPI 45
FI++I+ I+++II+ IIII+I +IIN
Sbjct: 132 FILLILFIVLMIIVGGKRGLKSLIGLVVNLFAIIIILIPLIINGFNP 178
>gnl|CDD|216818 pfam01970, TctA, Tripartite tricarboxylate transporter TctA family.
This family, formerly known as DUF112, is a family of
bacterial and archaeal tripartite tricarboxylate
transporters of the extracytoplasmic solute binding
receptor-dependent transporter group of families,
distinct from the ABC and TRAP-T families. TctA is part
of the tripartite TctABC system which, as characterized
in S. typhimurium, is a secondary carrier that depends
for activity on the extracytoplasmic
tricarboxylate-binding receptor TctC as well as two
integral membrane proteins, TctA and TctB. complete
three-component systems are found only in bacteria. TctA
is a large transmembrane protein with up to 12 predicted
membrane spanning regions in bacteria and up to 11 such
in archaea, with the N-terminal within the cytoplasm.
TctA is thought to be a permease, and in most other
bacteria functions without TctB and TctC molecules.
Length = 418
Score = 29.0 bits (66), Expect = 5.0
Identities = 7/39 (17%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 9 HKHHLWFIIIIIIIIIIIIIII-IIIIIIIIIINRIPIH 46
+ ++ +I ++I ++++I+ + +I + + RIP
Sbjct: 331 NPDLVYGLIASLLIANLLLLILGLPLIRLFARLLRIPYR 369
>gnl|CDD|203788 pfam07875, Coat_F, Coat F domain. The Coat F proteins, which
contribute to the Bacillales spore coat. It occurs
multiple times in the genomes it is found in.
Length = 64
Score = 26.7 bits (60), Expect = 5.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 114 ELALSALSNLKGVGTTLASALLAAATPEV 142
++A LS+ K + A+A+ A PE+
Sbjct: 4 DIANDLLSSAKAAASAYATAITETANPEL 32
>gnl|CDD|233663 TIGR01974, NDH_I_L, proton-translocating NADH-quinone
oxidoreductase, chain L. This model describes the 12th
(based on E. coli) structural gene, L, of bacterial NADH
dehydrogenase I, as well as chain 5 of the corresponding
mitochondrial complex I and subunit 5 (or F) of the
chloroplast NAD(P)H-plastoquinone dehydrogenase complex
[Energy metabolism, Electron transport].
Length = 609
Score = 29.2 bits (66), Expect = 5.1
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 2 IQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIII-----IIIIINRI-PIHSNISNIGWY 55
+ +H I + I+ I++ ++ + I R ++ + N WY
Sbjct: 486 AEPALEHHHVPALEIWSPTAVAILGILLAYLLYLGNPTLPAKIAQRHSGLYRLLLN-KWY 544
Query: 56 QNELPKKIKARG 67
+EL K+ +
Sbjct: 545 FDELYDKVFVKP 556
>gnl|CDD|227108 COG4767, VanZ, Glycopeptide antibiotics resistance protein
[Defense mechanisms].
Length = 199
Score = 28.5 bits (64), Expect = 5.1
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 6 KHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
K K L + I+ +I++I++ + +I+ ++ + S I
Sbjct: 24 KKGLKSVLATLSFIVYLIVLILLTLFPLILFAKLLWGPKKNRLGSLINL 72
>gnl|CDD|100080 cd06159, S2P-M50_PDZ_Arch, Uncharacterized Archaeal homologs of
Site-2 protease (S2P), zinc metalloproteases (MEROPS
family M50) which cleave transmembrane domains of
substrate proteins, regulating intramembrane
proteolysis (RIP) of diverse signal transduction
mechanisms. Members of the S2P/M50 family of RIP
proteases use proteolytic activity within the membrane
to transfer information across membranes to integrate
gene expression with physiologic stresses occurring in
another cellular compartment. In eukaryotic cells they
regulate such processes as sterol and lipid metabolism,
and endoplasmic reticulum stress responses. In
prokaryotes they regulate such processes as
sporulation, cell division, stress response, and cell
differentiation. This group appears to be limited to
Archaeal S2P/M50s homologs with additional putative
N-terminal transmembrane spanning regions, relative to
the core protein, and either one or two PDZ domains
present.
Length = 263
Score = 28.8 bits (65), Expect = 5.1
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 14 WFIIIIIIIIIIIII--IIIIIIIIIIIINRIP 44
F I I I + +I +++I++ III++ P
Sbjct: 57 AFGNIGIPIAFVGMIFMLLLILLSAIIILSGPP 89
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 28.9 bits (65), Expect = 5.1
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 354 PLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESVSESEAPVTKEG---EQKVPVEPT 410
PL + EP + A EA ++ A E +E+ T++ E PV+P
Sbjct: 194 PLDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPP 253
Query: 411 APVPVESKTET 421
P P S E
Sbjct: 254 VPKPYISPDEY 264
>gnl|CDD|216054 pfam00672, HAMP, HAMP domain.
Length = 70
Score = 26.8 bits (60), Expect = 5.1
Identities = 3/28 (10%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 21 IIIIIIIIIIIIIIIIIIIINRI--PIH 46
++++++I +++++++ ++ R+ P+
Sbjct: 1 LLLVLLIALLLLLLLAWLLARRLLRPLR 28
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator. Shisa is a
transcription factor-type molecule that physically
interacts with immature forms of the Wnt receptor
Frizzled and the FGF receptor within the endoplasmic
reticulum to inhibit their post-translational
maturation and trafficking to the cell surface.
Length = 177
Score = 28.6 bits (64), Expect = 5.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIII 38
F +I+ II ++ I+ III
Sbjct: 74 FGTNLIVGIICGVVFIVTIIICFT 97
>gnl|CDD|222964 PHA03042, PHA03042, CD47-like protein; Provisional.
Length = 286
Score = 28.9 bits (65), Expect = 5.3
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 12 HLWF-----IIIIIIIIIIIIIIIIIIIIIIIIINRI 43
WF +I+ ++ I III+ II + IN++
Sbjct: 106 IKWFTSEEINVILSLLSIYIIILWGTIITLTFKINKL 142
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 28.6 bits (64), Expect = 5.4
Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 35/161 (21%)
Query: 264 ESTVPAASSLPSEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTND 323
+ + A ++ E E S DD ++ DD + S
Sbjct: 16 QPALAAQAAAEYPDERYLDE-----EGSGDDDEFIDDEMDDEYSGSGS------------ 58
Query: 324 LPDPSTPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNG 383
+TP+++ D SA PP T S P N+ S++
Sbjct: 59 ---GATPSDDE--------DSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKT------S 101
Query: 384 ASEPESVSESEAPVTKEGEQKVPVEPTA-PVPVESKTETLR 423
+ +V+ + +P + E+ T P S T
Sbjct: 102 PTVSTTVTTTTSPSETDTEEATTTVSTETPTEGGSSAATDP 142
>gnl|CDD|223548 COG0472, Rfe, UDP-N-acetylmuramyl pentapeptide
phosphotransferase/UDP-N- acetylglucosamine-1-phosphate
transferase [Cell envelope biogenesis, outer membrane].
Length = 319
Score = 28.8 bits (65), Expect = 5.8
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 7 HYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
+ I + ++ I+ + I+ N
Sbjct: 121 PIKFLDIPLGIPFFKLPGPLLFILFAVFAIVGASN 155
>gnl|CDD|226657 COG4194, COG4194, Predicted membrane protein [General function
prediction only].
Length = 350
Score = 28.9 bits (65), Expect = 5.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNIS 50
K + ++I+ III ++I I+ N++P H NIS
Sbjct: 117 GKLKFPWTWFLVILGIIIFTLVIGIVYYPSAPNKMPTHVNIS 158
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins;
solute binding domain. LeuT is a bacterial amino acid
transporter with specificity for the hydrophobic amino
acids glycine, alanine, methionine, and leucine. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family; LeuT has been used as a structural
template for understanding fundamental aspects of SLC6
function. It has an arrangement of 12 transmembrane
helices (TMs), which appears to be a common motif for
eukaryotic and some prokaryotic and archaeal SLC6s: an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12.
Length = 500
Score = 28.8 bits (65), Expect = 5.8
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 8 YHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINR 42
+ W I +II + + + ++ + I
Sbjct: 465 FEVLIPWVNIARFVIIGVFLFLTFLVYLAIKRKYH 499
>gnl|CDD|224479 COG1563, COG1563, Predicted subunit of the Multisubunit Na+/H+
antiporter [Inorganic ion transport and metabolism].
Length = 87
Score = 27.0 bits (60), Expect = 5.9
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINRIPIHSNI 49
+I +I I++++ ++ I R +++ I
Sbjct: 8 GNLIEYLITILLLLSALLAIFQRDLLNAVI 37
>gnl|CDD|222484 pfam13974, YebO, YebO-like protein. This short protein is
uncharacterized. It seems likely to be of phage origin
as it is found in Bacteriophage HK022 Gp20 and
Bacteriophage HK97 Gp15. The protein is also found in a
variety of enteric bacteria.
Length = 80
Score = 26.9 bits (60), Expect = 6.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 23 IIIIIIIIIIIIIIIIIINRIPIHSN 48
+ IIII +I +I+ +NR + +N
Sbjct: 1 LGIIIIGALIGLIVWFFVNRASVRAN 26
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 29.0 bits (65), Expect = 6.1
Identities = 27/142 (19%), Positives = 38/142 (26%), Gaps = 30/142 (21%)
Query: 279 DTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPS 338
T+S LP E ++ + + + P P PT PAPS
Sbjct: 342 RTTSYGQLPLELAVIEALL--------VPVPAPQPAKPTAA----APSPVRPT---PAPS 386
Query: 339 QVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESVSESEAPVT 398
A N + P+++T P P E AP
Sbjct: 387 TRPKAAAAANIPPKEPVRETATPPP--------VPPRPVAPPVPHTPES-------APKL 431
Query: 399 KEGEQKVPVEPTAPVPVESKTE 420
V +P P K E
Sbjct: 432 TRAAIPVDEKPKYTPPAPPKEE 453
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 28.7 bits (64), Expect = 6.2
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 11/105 (10%)
Query: 326 DPSTPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGAS 385
P PP S A +P +P E EA P+ ++
Sbjct: 98 QIKIPVPQPPQISDPP-------AHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPVHSA 150
Query: 386 EPESVSESEAPVTKEGEQKV-PVEPTAPVPV-ESKTETLRVMLIN 428
P+ ++ P EQ+V P E P P + V+++N
Sbjct: 151 APQPAVQTVQP--AVPEQQVQPEEVVEPAPEVKRPPRKDTVIILN 193
>gnl|CDD|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein. The CorA
transport system is the primary Mg2+ influx system of
Salmonella typhimurium and Escherichia coli. CorA is
virtually ubiquitous in the Bacteria and Archaea. There
are also eukaryotic relatives of this protein. The
family includes the MRS2 protein from yeast that is
thought to be an RNA splicing protein. However its
membership of this family suggests that its effect on
splicing is due to altered magnesium levels in the cell.
Length = 291
Score = 28.4 bits (64), Expect = 6.4
Identities = 3/28 (10%), Positives = 15/28 (53%)
Query: 7 HYHKHHLWFIIIIIIIIIIIIIIIIIII 34
+ + I++ +++++ I++I+
Sbjct: 262 ELDWPYGYPFWIVLGLMLLLAILLILYF 289
>gnl|CDD|237462 PRK13665, PRK13665, hypothetical protein; Provisional.
Length = 316
Score = 28.7 bits (65), Expect = 6.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIII 34
L +III ++III +I+ +
Sbjct: 3 TLIGLIIIAVLIIIFLIVFFSFV 25
Score = 27.9 bits (63), Expect = 10.0
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINRIPI 45
+ +I +III ++III +I+ + +P+
Sbjct: 2 MTLIGLIIIAVLIIIFLIVFFSFVPV 27
>gnl|CDD|152726 pfam12291, DUF3623, Protein of unknown function (DUF3623). This
family of proteins is found in bacteria. Proteins in
this family are typically between 261 and 345 amino
acids in length.
Length = 261
Score = 28.4 bits (64), Expect = 6.5
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 113 LELALSALSNLKGVGTTLASALLAAATPE----VAPF 145
E AL+A + VG L +AL A A E V P
Sbjct: 204 AERALAAGTPADTVGFALLAALTALALLEHWFMVLPL 240
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD. These
permeases have been shown to translocate sodium,
arsenate, antimonite, sulfate and organic anions across
biological membranes in all three kingdoms of life. A
typical anion permease contains 8-13 transmembrane
helices and can function either independently as a
chemiosmotic transporter or as a channel-forming subunit
of an ATP-driven anion pump.
Length = 396
Score = 28.8 bits (65), Expect = 6.6
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 18/80 (22%)
Query: 94 NTPRAVMM-ETKKAFKKLPNLELALSALSNLKGVGTTLASA--LLAAATPEVAPFMADEC 150
N P ++ + LAL+ S L G T + S L+ E A
Sbjct: 316 NVPTVALLLPIAASLAPPEPAWLALALGSTLGGNLTLIGSLANLIPLGAAENA------- 368
Query: 151 LMAIPEIEGIDYTTKEYLKF 170
G+ + E+LK
Sbjct: 369 --------GVGISFGEFLKV 380
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 28.6 bits (64), Expect = 6.7
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 14/99 (14%)
Query: 320 NTNDLPDPSTPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKP 379
L P+ P P + + +PP + EP + E KP
Sbjct: 45 AAKVLEAPTEEPQPEPEPPEEQ---------PKPPTEPETPPEPTPP-----KPKEKPKP 90
Query: 380 EKNGASEPESVSESEAPVTKEGEQKVPVEPTAPVPVESK 418
EK P K Q P +P + ++
Sbjct: 91 EKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
>gnl|CDD|224094 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 289
Score = 28.4 bits (64), Expect = 6.7
Identities = 3/27 (11%), Positives = 17/27 (62%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIIN 41
+++ I+++ I+ ++ +I+ + ++
Sbjct: 133 SLLLAILLVAILGPGLLNLILALALVG 159
>gnl|CDD|222420 pfam13858, DUF4199, Protein of unknown function (DUF4199). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are typically between 167 and 182 amino
acids in length.
Length = 162
Score = 28.0 bits (63), Expect = 6.9
Identities = 5/34 (14%), Positives = 17/34 (50%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIG 53
+I +I+I++ ++ ++ + IP + +
Sbjct: 4 LIFGLILILLWLLSYLLGLHDLHIPTLPLLGLLL 37
>gnl|CDD|216188 pfam00916, Sulfate_transp, Sulfate transporter family. Mutations
in human SLC26A2 lead to several human diseases.
Length = 279
Score = 28.3 bits (64), Expect = 7.1
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIIIIIII-----IIIIINRIP 44
L++I ++ +I+ +I I + II IP
Sbjct: 87 RLKKLFWIPAPAPLVAVIVATVISYIFLADRYGVSIIGEIP 127
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 28.5 bits (64), Expect = 7.1
Identities = 35/182 (19%), Positives = 54/182 (29%), Gaps = 37/182 (20%)
Query: 274 PSEPEDTSSLQSLPSEKSLD-----DGSIGNNHTDDVTNDSVMTLGAESDTNTN---DLP 325
P+E E S + +EK++D S GN + N++ A NT D+
Sbjct: 61 PTEHESQQSSNNAGAEKNIDLSGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDIS 120
Query: 326 DP---STPTNNPPAPS-----QVEMDG-------------------ADDNASAEPPLKKT 358
P TPT P + ++E+ G A N S P T
Sbjct: 121 APPISPTPTQAAPPQTPNGQQRIELPGNISDALSQQQGQVNAASQNAQGNTSTLPTAPAT 180
Query: 359 KLSEPENEVANNGESSEAAKPEKNGASEPESVSESEAPVTKEGE-QKVPVEPTAPVPVES 417
++ + + P+K +P A V P A S
Sbjct: 181 -VAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASARALS 239
Query: 418 KT 419
Sbjct: 240 SA 241
>gnl|CDD|220287 pfam09546, Spore_III_AE, Stage III sporulation protein AE
(spore_III_AE). This represents the stage III
sporulation protein AE, which is encoded in a spore
formation operon spoIIIAABCDEFGH under the control of
sigma G. A comparative genome analysis of all sequenced
genomes of Firmicutes shows that the proteins are
strictly conserved among the sub-set of
endospore-forming species.
Length = 328
Score = 28.7 bits (65), Expect = 7.2
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 17 IIIIIIIIIIIIIIIIIIIIIIIINRI 43
I +III+ I +I I+ + I ++
Sbjct: 250 IAGLIIIVGICAFPLIKILALAFIYKL 276
>gnl|CDD|221072 pfam11309, DUF3112, Protein of unknown function (DUF3112). This
eukaryotic family of proteins has no known function.
Length = 160
Score = 28.0 bits (63), Expect = 7.2
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIIN 41
F I +I++ ++++ ++I+ II +
Sbjct: 6 RRLFWIFMILLYLLVVGVLIMTIITSAVPY 35
>gnl|CDD|193205 pfam12729, 4HB_MCP_1, Four helix bundle sensory module for signal
transduction. This family is a four helix bundle that
operates as a ubiquitous sensory module in prokaryotic
signal-transduction. The 4HB_MCP is always found
between two predicted transmembrane helices indicating
that it detects only extracellular signals. In many
cases the domain is associated with a cytoplasmic HAMP
domain suggesting that most proteins carrying the
bundle might share the mechanism of transmembrane
signalling which is well-characterized in E coli
chemoreceptors.
Length = 181
Score = 28.0 bits (63), Expect = 7.2
Identities = 8/41 (19%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELP 60
+I++ +++ +++II+ I+ + + I+ N + Y++ L
Sbjct: 8 LILLFLLLALLLIIVGIVGLYSLKKINKNSETM--YEDRLL 46
>gnl|CDD|222319 pfam13687, DUF4153, Domain of unknown function (DUF4153). Members
of this family are annotated as putative inner membrane
proteins.
Length = 216
Score = 28.3 bits (64), Expect = 7.3
Identities = 8/44 (18%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Query: 13 LWFIIIIIIII-------IIIIIIIIIIIIIIIIIN--RIPIHS 47
+W +I+I+ ++ I + + I++++ + +N I ++S
Sbjct: 165 IWLLIVIVYLLFRKKQRWIPLSLSILLLLSSVGPLNAFSISVNS 208
>gnl|CDD|234235 TIGR03503, TIGR03503, TIGR03503 family protein. This set of
conserved hypothetical protein has a phylogenetic range
that closely matches that of TIGR03501, a putative
C-terminal protein targeting signal.
Length = 374
Score = 28.5 bits (64), Expect = 7.6
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIII 36
F IIII+ ++I+++ I +
Sbjct: 346 KFWIIIIVGNVVILLLGGIGFFV 368
>gnl|CDD|225711 COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 755
Score = 28.7 bits (64), Expect = 7.7
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 15/107 (14%)
Query: 293 DDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAPSQVEMDGADDNASAE 352
D S+ + V D + + L DP+ P
Sbjct: 618 DAASVAEAFGETVQAD--LDFADDLSALLQPLDDPAVSAKAPRLA-----------DLEL 664
Query: 353 PPLKKTKLSEPENEVANNGESSEAAKPE--KNGASEPESVSESEAPV 397
K + EP E A ES A+P+ K+ EP +VS EA +
Sbjct: 665 LLAGKAEAEEPAVEEAELNESEADAEPDFLKDDEPEPATVSIEEANI 711
>gnl|CDD|215939 pfam00482, T2SF, Type II secretion system (T2SS), protein F. The
original family covered both the regions found by the
current model. The splitting of the family has allowed
the related FlaJ_arch (archaeal FlaJ family) to be
merged with it. Proteins with this domain in form a
platform for the machiney of the Type II secretion
system, as well as the Type 4 pili and the archaeal
flagella. This domain seems to show some similarity to
PF00664 but this may just be due to similarities in the
TM helices (personal obs: C Yeats).
Length = 124
Score = 27.3 bits (61), Expect = 7.8
Identities = 3/27 (11%), Positives = 19/27 (70%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIII 40
++ +I++++ +++++I++ I++
Sbjct: 97 ILAALLYPLILLVVALLVLLILLAILL 123
Score = 27.3 bits (61), Expect = 7.8
Identities = 3/24 (12%), Positives = 18/24 (75%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIII 38
+ +I++++ +++++I++ I++
Sbjct: 101 LLYPLILLVVALLVLLILLAILLP 124
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 28.7 bits (64), Expect = 7.8
Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 6/102 (5%)
Query: 323 DLPDPSTPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNG--ESSEAAKPE 380
D A ++ D D A+PP S P ++ + E + A
Sbjct: 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAP 499
Query: 381 KNGASEPESVSESEAPVTKEGEQKVPVEP----TAPVPVESK 418
+ + A ++E P P P +
Sbjct: 500 SAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAA 541
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of
proteins which are of the serpentine type. Srv is a
member of the Srg superfamily of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 283
Score = 28.4 bits (64), Expect = 8.0
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 15 FIIIIIIIIIIIIIIIIIIIII 36
F + I+ + + +I+I ++ +
Sbjct: 1 FYGLSIVTLPLYFLILICLLKL 22
>gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional.
Length = 744
Score = 28.8 bits (64), Expect = 8.1
Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 332 NNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAKPEKNGASEPESVS 391
++ P+ M A A + P +++ S P+ GE+ +A + N ++
Sbjct: 2 SSRPSAFDALMSNARAAAKKKQPQTQSQSSSPKKR--KIGETQDANLGKTN--VSEGTLP 57
Query: 392 ESEAPVTKEGEQKVPVEPTAPVPVESKTETLR 423
++E + + + P T+ + +SKT T +
Sbjct: 58 KTEDTIEPKSDSAKPRSSTSSIAEDSKTGTKK 89
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 28.0 bits (62), Expect = 8.1
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 325 PDPSTPTNNPPAPSQVEMDGADDNASAEPPL--KKTKLSEPENEVANNGESSEAAKPEKN 382
P P +P + P D + + + +PP KK + + E E G PE
Sbjct: 65 PCPPSPGHPPQTN-----DTHEKDLALQPPPGGKKKEKKKKETEKPAQGGEKPDQGPEAK 119
Query: 383 GASE---PESVSESEAPVTKEGEQKV 405
G E PE + P GE +V
Sbjct: 120 GEGEGHEPEDPPPEDTPPPPGGEGEV 145
>gnl|CDD|225743 COG3202, COG3202, ATP/ADP translocase [Energy production and
conversion].
Length = 509
Score = 28.4 bits (64), Expect = 8.1
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINR 42
I ++ +I III ++ I + +N+
Sbjct: 465 VRAISPVLAVIFIIICVLWIYAVKYLNK 492
>gnl|CDD|227084 COG4741, COG4741, Predicted secreted endonuclease distantly
related to archaeal Holliday junction resolvase
[Nucleotide transport and metabolism].
Length = 175
Score = 27.8 bits (62), Expect = 8.2
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 23 IIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNELPKKIKARGKDAHLNHEELVQLMK 82
+I+I+I+I+ I+ +++ + R I S + EL + ++ ++ +N + + +
Sbjct: 2 LIVILILIVFILALVLYLLRAYIRSLQGKVESKARELEETLQKAERERLVNEAQARKEEE 61
Query: 83 WK 84
WK
Sbjct: 62 WK 63
>gnl|CDD|119320 cd06574, TM_PBP1_branched-chain-AA_like, Transmembrane subunit (TM)
of Periplasmic Binding Protein (PBP)-dependent
ATP-Binding Cassette (ABC) transporters which are
involved in the uptake of branched-chain amino acids
(AAs), as well as TMs of transporters involved in the
uptake of monosaccharides including ribose, galactose,
and arabinose. These transporters generally bind type 1
PBPs. PBP-dependent ABC transporters consist of a PBP,
two TMs, and two cytoplasmic ABCs, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. This group includes Escherichia coli LivM and
LivH, two TMs which heterodimerize to form the
translocation pathway of the E. coli branched-chain AA
LIV-1/LS transporter. This transporter is comprised of
two TMs (LivM and LivH), two ABCs (LivG and LivF), and
one of two alternative PBPs, LivJ (LIV-BP) and LivK
(LS-BP). In addition to transporting branched-chain AAs
including leucine, isoleucine and valine, the E. coli
LIV-1/LS transporter is involved in the uptake of the
aromatic AA, phenylalanine. Included in this group are
proteins from transport systems that contain a single TM
which homodimerizes to generate the transmembrane pore;
for example E. coli RbsC, AlsC, and MglC, the TMs of the
high affinity ribose transporter, the D-allose
transporter and the galactose transporter, respectively.
The D-allose transporter may also to be involved in low
affinity ribose transport.
Length = 266
Score = 28.0 bits (63), Expect = 8.2
Identities = 6/30 (20%), Positives = 19/30 (63%)
Query: 10 KHHLWFIIIIIIIIIIIIIIIIIIIIIIII 39
L F I + I +++++I+++++ ++I
Sbjct: 109 GLLLLFGISGTLSIPVVLLLIVLLVLFLVI 138
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion].
Length = 280
Score = 28.3 bits (63), Expect = 8.2
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 14 WFIIIIIIIIIIIIIIIIIIIIIIIIINRI 43
I IIII+I++++ ++ ++ RI
Sbjct: 251 IRCYGICFIIIIVIVVVVFKVVPFVVFTRI 280
>gnl|CDD|227057 COG4713, COG4713, Predicted membrane protein [Function unknown].
Length = 489
Score = 28.3 bits (63), Expect = 8.2
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINRIPIHSNI 49
I I ++I + II N PI
Sbjct: 399 IFIYFGYLVISLGIIYAASYDNWTPIGELS 428
>gnl|CDD|220626 pfam10192, GpcrRhopsn4, Rhodopsin-like GPCR transmembrane domain.
This region of 270 amino acids is the seven
transmembrane alpha-helical domains included within five
GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor
(GPCR) protein, conserved from nematodes to humans.
GPCRs are integral membrane receptors whose
intracellular actions are mediated by signalling
pathways involving G proteins and downstream secondary
messengers.
Length = 256
Score = 28.0 bits (63), Expect = 8.3
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 19 IIIIIIIIIIIIIIIIIIIIIINRIP-----IHSNISNIGW 54
+I++ II++I++ +I++I I H S G+
Sbjct: 135 VILLPIIVLIVVFQVILVIWYIKYFFDPASKFHLYESWPGY 175
>gnl|CDD|215884 pfam00375, SDF, Sodium:dicarboxylate symporter family.
Length = 388
Score = 28.3 bits (64), Expect = 8.3
Identities = 2/26 (7%), Positives = 14/26 (53%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIIIII 38
F++ + + + I + ++ +++ +
Sbjct: 206 GKFVLTVYLALAIHLFVVYPLLLKFL 231
>gnl|CDD|165431 PHA03160, PHA03160, hypothetical protein; Provisional.
Length = 499
Score = 28.5 bits (63), Expect = 8.7
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 320 NTNDLPDP-STPTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGESSEAAK 378
N + L P + P P V+ A PP++ + +P + +G S+EA K
Sbjct: 408 NDHHLLPPLACSQQLPMQPLHVQQAPMQAPHVAPPPMQPPHVQQPRVLPSTDGASNEAPK 467
Query: 379 PEKNGASEPESVSES--EAPVTK 399
P A EP + S + PV+K
Sbjct: 468 PS---AQEPVHIDASFAQDPVSK 487
>gnl|CDD|224194 COG1275, TehA, Tellurite resistance protein and related permeases
[Inorganic ion transport and metabolism].
Length = 329
Score = 28.1 bits (63), Expect = 8.9
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 8 YHKHHLWFIIIIIIIIIIIIIII 30
H+L I+ +I I I++++
Sbjct: 286 GVFHYLGLILGTFLIFIWIVLLV 308
>gnl|CDD|220520 pfam10011, DUF2254, Predicted membrane protein (DUF2254). Members
of this family of bacterial proteins comprises various
hypothetical and putative membrane proteins. Their exact
function, has not, as yet, been defined.
Length = 369
Score = 28.3 bits (64), Expect = 9.0
Identities = 6/62 (9%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 20 IIIIIIIIIIIIIIIIIIIIINRIP----IHSNISNIGWYQNELPKKIKARGKDAHLNHE 75
+ +++ I++ ++ + +I I+ + + + I + I + L
Sbjct: 125 LSVLVTILLAVLSVAALIYFIHHLARLIQVDNIIDRVE---EATRAAIDRLFPEPCLGAR 181
Query: 76 EL 77
Sbjct: 182 PP 183
>gnl|CDD|191128 pfam04923, Ninjurin, Ninjurin. Ninjurin (nerve injury-induced
protein) is involved in nerve regeneration and in the
formation and function in some tissues.
Length = 100
Score = 26.7 bits (60), Expect = 9.0
Identities = 8/46 (17%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 7 HYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
+ H F ++ ++ I I++ +++ I++++I+R+ I+ ++
Sbjct: 33 EVGEEH-SFYYFLLTLLSISIVLQVVVGILLLLISRLNINKRKADR 77
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 28.3 bits (63), Expect = 9.1
Identities = 23/156 (14%), Positives = 40/156 (25%), Gaps = 25/156 (16%)
Query: 214 LLEDIRSLSSNNTNNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSL 273
+L D +S ++ S + + ++DT S + P S +
Sbjct: 364 VLRDSQSSKIQQIRDSISVSGSDYSNPGSSIDTPS-----------SSPSSSVIMTPPDS 412
Query: 274 PSEPEDTSSLQSLPSEKS-------LDDGSIGNNHTDDVTNDSVMTLGAESDTNT----- 321
+S P KS L +I E +
Sbjct: 413 GPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTLASIPDEKPSNISVFEDSETSPNSST 472
Query: 322 --NDLPDPSTPTNNPPAPSQVEMDGADDNASAEPPL 355
D P + P+ + S+ PPL
Sbjct: 473 LLRDPPPKKCGEESGHLPNNPFFNKLKLTLSSIPPL 508
>gnl|CDD|217407 pfam03176, MMPL, MMPL family. Members of this family are putative
integral membrane proteins from bacteria. Several of the
members are mycobacterial proteins. Many of the proteins
contain two copies of this aligned region. The function
of these proteins is not known, although it has been
suggested that they may be involved in lipid transport.
Length = 332
Score = 28.0 bits (63), Expect = 9.1
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 24 IIIIIIIIIIIIIIIIINRIPI 45
+I + +++I II++I+ R +
Sbjct: 146 LIEAVTLVVIFIILLIVYRSVV 167
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.4 bits (64), Expect = 9.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
F ++ ++ I +I II+ III I
Sbjct: 573 FNLMAGLLPPSIGVIGIIVGIIIFIF 598
>gnl|CDD|217065 pfam02489, Herpes_glycop_H, Herpesvirus glycoprotein H.
Herpesvirus glycoprotein H (gH) is a virion associated
envelope glycoprotein. Complex formation between gH and
gL has been demonstrated in both virions and infected
cells.
Length = 655
Score = 28.5 bits (64), Expect = 9.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 16 IIIIIIIIIIIIIIIIIIIIII 37
II+II+ I I+ + ++ I
Sbjct: 634 IILIILYFIGAILALFLLYKIF 655
Score = 28.5 bits (64), Expect = 9.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 17 IIIIIIIIIIIIIIIIIIIIII 38
II+II+ I I+ + ++ I
Sbjct: 634 IILIILYFIGAILALFLLYKIF 655
Score = 28.5 bits (64), Expect = 9.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 18 IIIIIIIIIIIIIIIIIIIIII 39
II+II+ I I+ + ++ I
Sbjct: 634 IILIILYFIGAILALFLLYKIF 655
Score = 28.5 bits (64), Expect = 9.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 19 IIIIIIIIIIIIIIIIIIIIII 40
II+II+ I I+ + ++ I
Sbjct: 634 IILIILYFIGAILALFLLYKIF 655
>gnl|CDD|187756 cd09299, TDT, The Tellurite-resistance/Dicarboxylate Transporter
(TDT) family. The Tellurite-resistance/Dicarboxylate
Transporter (TDT) family includes members from all three
kingdoms, but only three members of the family have been
functionally characterized: the TehA protein of E. coli
functioning as a tellurite-resistance uptake permease,
the Mae1 protein of S. pombe functioning in the uptake
of malate and other dicarboxylates, and the sulfite
efflux pump (SSU1) of Saccharomyces cerevisiae. In
plants, the plasma membrane protein SLAC1 (Slow Anion
Channel-Associated 1), which is preferentially expressed
in guard cells, encodes a distant homolog of fungal and
bacterial dicarboxylate/malic acid transport proteins.
SLAC1 is essential in mediating stomatal responses to
physiological and stress stimuli. Members of the TDT
family exhibit 10 putative transmembrane alpha-helical
spanners (TMSs).
Length = 326
Score = 28.1 bits (63), Expect = 9.2
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 6 KHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHS 47
+ + +I + + I + I I II +R+ I+
Sbjct: 158 PYSPGGAIQLSVIFLGYLFFGIGFFLFIFIGAIIFSRLVINK 199
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 28.3 bits (63), Expect = 9.3
Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 18/203 (8%)
Query: 212 PELLEDIRSLSSNNTNNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAAS 271
P ED ++ + T N G S H + E T+NN+ + S+
Sbjct: 530 PSQREDKLAIPTEGTQNLQGISD-HPEQFEFQNELSPLE------TKNNESNLSSDAETE 582
Query: 272 SLPSEPEDTSSLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPS--T 329
P+ PE S ++LD N T + +N + AE+ T ++ + +
Sbjct: 583 GSPN-PEMPSWSSVTVPSEALD-----NYETTNPSNAKEVRNFAETGIQTTNVGESADLL 636
Query: 330 PTNNPPAPSQVEMDGADDNASAEPPLKKTKLSEPENEVANNGES---SEAAKPEKNGASE 386
+NP +E + + + + S E +V + + SE K + E
Sbjct: 637 LISNPMEVEPMESEKEESESDGSFIEVDSVSSTLELQVPSKSQPTDESEENAENKVASIE 696
Query: 387 PESVSESEAPVTKEGEQKVPVEP 409
E E E + E E+ V
Sbjct: 697 GEHRKEIEDLLFDESEEDNIVGM 719
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 27.9 bits (63), Expect = 9.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIII 40
F I + +II +I++I+ II+III
Sbjct: 146 FRIFTLSSVIINVIVLIVYIILIIIF 171
>gnl|CDD|147877 pfam05961, Chordopox_A13L, Chordopoxvirus A13L protein. This
family consists of A13L proteins from the
Chordopoxviruses. A13L or p8 is one of the three most
abundant membrane proteins of the intracellular mature
Vaccinia virus.
Length = 68
Score = 25.9 bits (57), Expect = 9.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 18 IIIIIIIIIIIIIIIIIIIIIIINRIPIHSN 48
+I +I++II + II +I+ I N+
Sbjct: 1 MIGDLILVIICVAIIGLIVYGIYNKKTTTQQ 31
>gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The
sodium/dicarboxylate cotransporter NaDC-1 has been shown
to translocate Krebs cycle intermediates such as
succinate, citrate, and alpha-ketoglutarate across
plasma membranes rabbit, human, and rat kidney. It is
related to renal and intestinal Na+/sulfate
cotransporters and a few putative bacterial permeases.
The SLC13-type proteins belong to the ArsB/NhaD
superfamily of permeases that translocate sodium and
various anions across biological membranes in all three
kingdoms of life. A typical ArsB/NhaD permease is
composed of 8-13 transmembrane helices.
Length = 382
Score = 28.3 bits (64), Expect = 9.6
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 15/57 (26%)
Query: 13 LWFIIIIIIIIIIII---------------IIIIIIIIIIIIINRIPIHSNISNIGW 54
LWFI + ++II I+ + I I I+++ + + +I W
Sbjct: 185 LWFIFRLAVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVFGGVLLTKEDYKSIDW 241
>gnl|CDD|217005 pfam02378, PTS_EIIC, Phosphotransferase system, EIIC. The
bacterial phosphoenolpyruvate: sugar phosphotransferase
system (PTS) is a multi-protein system involved in the
regulation of a variety of metabolic and transcriptional
processes. The sugar-specific permease of the PTS
consists of three domains (IIA, IIB and IIC). The IIC
domain catalyzes the transfer of a phosphoryl group from
IIB to the sugar substrate.
Length = 313
Score = 28.1 bits (63), Expect = 9.6
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIIN 41
F+ II + +++I ++ +I I
Sbjct: 153 FVPIITGFVTLLVIGPVLGLIWPAIQG 179
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and
metabolism / General function prediction only].
Length = 493
Score = 28.4 bits (64), Expect = 9.7
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIII 36
+ +I++I +I+I I+++I+
Sbjct: 183 FIQGLIMLIALIVIPILVLILFGGF 207
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 28.4 bits (64), Expect = 9.8
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 87 LNYLVKVNTPRAVMMETKKAFKK----LPNLELALSALSNLKGVGTTLASALLA-AATPE 141
L ++ + TP AV E AF + L + + A+ G +ALLA T
Sbjct: 94 LRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAVRGAPGGPAIAFAALLATPPTAA 153
Query: 142 VA 143
V
Sbjct: 154 VD 155
>gnl|CDD|235682 PRK06041, PRK06041, flagellar assembly protein J; Reviewed.
Length = 553
Score = 28.3 bits (64), Expect = 9.9
Identities = 9/35 (25%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 12 HLWFIIIIII-IIIIIIIIIIIIIIIIIIINRIPI 45
II + + I++++++++ II I+I++IP+
Sbjct: 264 RKLLIISVPLSAILVLLLLLLGFIIGPILIDKIPL 298
>gnl|CDD|222918 PHA02687, PHA02687, ORF061 late transcription factor VLTF-4;
Provisional.
Length = 231
Score = 27.7 bits (61), Expect = 10.0
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 315 AESDTNTNDLPDPSTPTNNPPAPSQVEMDGADDNASAEPPLKKT----KLSEP---ENEV 367
+E + LP P + PPAP + A A+ P K KL P +++
Sbjct: 63 SEQECQQEQLPVPESV---PPAPVKTPKRRTKKKAKADKPEKSPKAVEKLCPPDDRDDKN 119
Query: 368 ANNGESSEAAKPEKNGASE 386
+ EA + E++G +E
Sbjct: 120 EEKEPTEEAQRNEESGDAE 138
>gnl|CDD|221309 pfam11912, DUF3430, Protein of unknown function (DUF3430). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 209 to 265 amino acids in
length.
Length = 204
Score = 27.9 bits (62), Expect = 10.0
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 19 IIIIIIIIIIIIIIIIIIIIIINRIP 44
++ +I++I++I+ +I IN IP
Sbjct: 3 LLFSLILLILLILNFVISQQYINFIP 28
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins. Escherichia
coli Wzx and related proteins from other gram-negative
bacteria are thought to act as flippases, assisting in
the membrane translocation of lipopolysaccharides
including those containing O-antigens. Proteins from the
MATE family are involved in exporting metabolites across
the cell membrane and are often responsible for
multidrug resistance (MDR).
Length = 402
Score = 28.3 bits (64), Expect = 10.0
Identities = 5/46 (10%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 5 KKHYHKHHLWFIIIIIIIIII-IIIIIIIIIIIIIIINRIPIHSNI 49
+ K +++ +I+ I+ ++++ + +I P +
Sbjct: 66 RYRKEKIREIISTSLVLKLILGILALLLLFLFAFLIAFYDPELVLL 111
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.126 0.352
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,628,013
Number of extensions: 2077582
Number of successful extensions: 16831
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12983
Number of HSP's successfully gapped: 987
Length of query: 436
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 336
Effective length of database: 6,502,202
Effective search space: 2184739872
Effective search space used: 2184739872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (26.8 bits)