RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4731
(436 letters)
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter
MsbA, N-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 319
Score = 36.4 bits (82), Expect = 0.005
Identities = 5/50 (10%), Positives = 18/50 (36%)
Query: 6 KHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWY 55
I+ I +I+ ++ ++ +++ ++ S + W
Sbjct: 9 PTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWM 58
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS
(YggB), transmembrane region {Escherichia coli [TaxId:
562]}
Length = 86
Score = 31.5 bits (72), Expect = 0.035
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNIS 50
+ + I+ + III+ +II +I +NR+ I I
Sbjct: 1 YAVNIVAALAIIIVGLIIARMISNAVNRLMISRKID 36
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 31.9 bits (71), Expect = 0.15
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 7 HYHKHHLW-FIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNI 52
Y+ W F ++ + ++I++ I + + + + N
Sbjct: 28 QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNY 74
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
{Escherichia coli [TaxId: 562]}
Length = 501
Score = 31.9 bits (72), Expect = 0.16
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISN------IGWYQN 57
H + I ++I + I+ ++I + + I +R + + W +
Sbjct: 441 HTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATS 493
Score = 31.5 bits (71), Expect = 0.23
Identities = 8/48 (16%), Positives = 21/48 (43%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGWYQNEL 59
H +I ++I + I+ ++I + + I + +++ W L
Sbjct: 441 HTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTL 488
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase
subunit II {Paracoccus denitrificans [TaxId: 266]}
Length = 107
Score = 29.5 bits (66), Expect = 0.25
Identities = 5/41 (12%), Positives = 17/41 (41%)
Query: 4 NKKHYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIP 44
+ + +I ++ ++I++ I + I+ +P
Sbjct: 67 VPARFTHNTPIEVIWTLVPVLILVAIGAFSLPILFRSQEMP 107
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase,
subunit II {Escherichia coli [TaxId: 562]}
Length = 91
Score = 28.6 bits (64), Expect = 0.36
Identities = 3/24 (12%), Positives = 12/24 (50%)
Query: 13 LWFIIIIIIIIIIIIIIIIIIIII 36
+ +++I++I I++ +
Sbjct: 18 ILTAFGLMLIVVIPAILMAVGFAW 41
Score = 27.4 bits (61), Expect = 1.2
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 11 HHLWFIIIIIIIIIIIIIIIIIII 34
F +++I++I I++ +
Sbjct: 18 ILTAFGLMLIVVIPAILMAVGFAW 41
Score = 26.6 bits (59), Expect = 1.7
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIII 35
L +++I++I I++ +
Sbjct: 18 ILTAFGLMLIVVIPAILMAVGFAW 41
Score = 25.5 bits (56), Expect = 4.7
Identities = 3/24 (12%), Positives = 10/24 (41%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIIII 32
++I++I I++ +
Sbjct: 18 ILTAFGLMLIVVIPAILMAVGFAW 41
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 56
Score = 27.8 bits (62), Expect = 0.40
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 118 SALSNLKGVGTTLASALLAA-ATPEVAPFMADECLMAIPEI 157
S+L ++GVG LL + + E + +P I
Sbjct: 2 SSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 42
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase,
subunit II {Cow (Bos taurus) [TaxId: 9913]}
Length = 90
Score = 28.6 bits (64), Expect = 0.45
Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 7 HYHKHHLWFIIIIIIIIIIIIIIIIIIIIIIIIINRIPIHSNISNIGW 54
H+H H ++I+ +I +++ II +++ + + + + W
Sbjct: 22 HFHDH----TLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIW 65
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Length = 509
Score = 28.6 bits (63), Expect = 1.5
Identities = 2/34 (5%), Positives = 13/34 (38%)
Query: 2 IQNKKHYHKHHLWFIIIIIIIIIIIIIIIIIIII 35
I +++ ++ I + +++++
Sbjct: 432 INRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAR 465
Score = 27.8 bits (61), Expect = 2.7
Identities = 2/28 (7%), Positives = 11/28 (39%)
Query: 9 HKHHLWFIIIIIIIIIIIIIIIIIIIII 36
K + ++ I + +++++
Sbjct: 438 IKVPRIYYYVMRYITPAFLAVLLVVWAR 465
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
subunit I {Thermus thermophilus [TaxId: 274]}
Length = 549
Score = 28.4 bits (63), Expect = 1.7
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 13 LWFIIIIIIIIIIIIIIIIIII 34
WF + I++++ ++ +
Sbjct: 516 FWFAVAAILVVLAYGPTLVQLF 537
>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 100
Score = 26.7 bits (59), Expect = 1.8
Identities = 6/44 (13%), Positives = 21/44 (47%)
Query: 161 DYTTKEYLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTH 204
+++ K + + F++ + K + + ++V++ L +H
Sbjct: 34 EFSFKNFNQAFGFMSRVALQAEKMNHHPEWFNVYNKVQITLTSH 77
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease
protein MetI {Escherichia coli [TaxId: 562]}
Length = 203
Score = 28.1 bits (62), Expect = 1.8
Identities = 2/21 (9%), Positives = 13/21 (61%)
Query: 14 WFIIIIIIIIIIIIIIIIIII 34
++ ++++++I++ +I
Sbjct: 181 ATVMNTVLVLLVILVYLIQFA 201
Score = 26.6 bits (58), Expect = 4.9
Identities = 2/23 (8%), Positives = 14/23 (60%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIII 37
+ ++ ++++++I++ +I
Sbjct: 179 YNATVMNTVLVLLVILVYLIQFA 201
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 28.2 bits (62), Expect = 2.0
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 15 FIIIIIIIIIIIIIIIIIIIIIIIIINRIP 44
++ + I I I+ ++ I + +
Sbjct: 350 LLVQLESIAITIVWSGVVAFIGYKLADLTV 379
>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase
(PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 99
Score = 26.4 bits (58), Expect = 2.3
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 161 DYTTKEYLKFVNFINNTVERLNKESKNGTGTWNAHQVELALWTH 204
+ K++ + F+ + K + ++V + L TH
Sbjct: 32 QFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTH 75
>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type
3, strain Sabin [TaxId: 12086]}
Length = 334
Score = 27.5 bits (61), Expect = 3.0
Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 222 SSNNTNNTNGNSTTHVNGTNQALDTCSDESNLEPATQNNKPDESTVPAASSLPSEPEDTS 281
+ N+N G ST + N D+ S+ ++ + +Q+ P + T P L +
Sbjct: 11 AHENSNRAYGGSTINYTTINYYKDSASNAASKQDYSQD--PSKFTEPLKDVL---IKTAP 65
Query: 282 SLQSLPSEKSLDDGSIGNNHTDDVTNDSVMTLGAESDTNTNDLPDPSTPTNNPPAP 337
+L + + ++GN+ T ++ ++ A D + P + P P
Sbjct: 66 ALNACGYSDRVLQLTLGNSTI--TTQEAANSVVAYGRWPEFIRDDEANPVDQPTEP 119
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 27.0 bits (58), Expect = 4.8
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 58 ELPKKIKARGKDAHLNHEELVQ-----LMKWKQTLNYLVKVNTPRAVMMETKKAFKKLPN 112
+L +K+++ L+ E + + + N + T + L
Sbjct: 45 QLVQKLQSG----ELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGLLYG 100
Query: 113 LELALSALSNLKGVGTTLASALLAAATPE 141
+ ++L + KG +TL +L E
Sbjct: 101 VPVSLKECFSYKGHDSTLGLSLNEGMPSE 129
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 538
Score = 26.7 bits (59), Expect = 5.6
Identities = 4/53 (7%), Positives = 14/53 (26%), Gaps = 7/53 (13%)
Query: 12 HLWFIIIIIIIIIIIIIIIIIIIIIIIIINR-------IPIHSNISNIGWYQN 57
W + + + + + +I + R + + + W
Sbjct: 478 ATWNFVSSLGAFLSFASFLFFLGVIFYTLTRGARVTANNYWNEHADTLEWTLT 530
>d1j2ga2 d.96.1.4 (A:159-312) Urate oxidase (uricase) {Bacillus sp.,
strain TB-90 [TaxId: 1409]}
Length = 154
Score = 25.6 bits (56), Expect = 7.9
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 146 MADECLMAIPEIEGIDYT--TKEYLKFVNFI---NNTV 178
+ L P+++ + + + K V I V
Sbjct: 98 IGRRILERFPQLQEVYFESQNHTWDKIVEEIPESEGKV 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.126 0.352
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,528,439
Number of extensions: 69104
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 36
Length of query: 436
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 348
Effective length of database: 1,199,356
Effective search space: 417375888
Effective search space used: 417375888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (24.8 bits)