Query psy4734
Match_columns 367
No_of_seqs 252 out of 1491
Neff 7.7
Searched_HMMs 46136
Date Sat Aug 17 00:37:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08393 DHC_N2: Dynein heavy 100.0 2.2E-33 4.7E-38 280.0 8.6 137 1-137 216-352 (408)
2 PF07728 AAA_5: AAA domain (dy 99.3 5.8E-12 1.3E-16 106.8 6.3 125 184-329 1-139 (139)
3 COG5245 DYN1 Dynein, heavy cha 99.1 1.3E-09 2.8E-14 118.0 14.3 116 13-131 625-741 (3164)
4 PHA02244 ATPase-like protein 98.9 4.8E-09 1E-13 102.1 9.9 137 175-337 112-261 (383)
5 TIGR02640 gas_vesic_GvpN gas v 98.8 2E-08 4.3E-13 94.6 10.2 141 175-338 14-186 (262)
6 COG5245 DYN1 Dynein, heavy cha 98.8 1.3E-09 2.9E-14 117.9 0.8 145 174-337 1821-1967(3164)
7 COG5271 MDN1 AAA ATPase contai 98.8 2.4E-08 5.2E-13 109.2 9.6 137 178-336 884-1033(4600)
8 PF08393 DHC_N2: Dynein heavy 98.7 6.6E-09 1.4E-13 103.8 3.3 124 66-189 201-353 (408)
9 TIGR01650 PD_CobS cobaltochela 98.6 1.5E-07 3.3E-12 90.6 10.3 134 180-335 62-218 (327)
10 KOG1808|consensus 98.4 2.7E-07 5.8E-12 104.2 5.0 134 180-334 438-583 (1856)
11 PRK11331 5-methylcytosine-spec 98.4 1.2E-05 2.5E-10 80.6 15.8 244 75-337 92-358 (459)
12 COG5271 MDN1 AAA ATPase contai 98.1 3.9E-06 8.4E-11 92.7 7.0 135 179-336 1540-1689(4600)
13 TIGR02903 spore_lon_C ATP-depe 97.6 0.0079 1.7E-07 63.5 21.0 166 183-360 176-377 (615)
14 PRK14961 DNA polymerase III su 97.6 0.00015 3.1E-09 71.7 6.5 139 182-338 38-179 (363)
15 PRK07003 DNA polymerase III su 97.5 0.00027 5.8E-09 74.9 7.8 146 182-351 38-189 (830)
16 PRK14958 DNA polymerase III su 97.5 0.00013 2.8E-09 75.2 5.2 141 181-351 37-193 (509)
17 PF00004 AAA: ATPase family as 97.5 0.0002 4.3E-09 59.1 5.5 113 185-333 1-128 (132)
18 PF13177 DNA_pol3_delta2: DNA 97.4 0.00044 9.6E-09 60.4 7.0 134 181-337 18-161 (162)
19 PRK12323 DNA polymerase III su 97.4 0.00014 3.1E-09 75.9 4.1 141 182-338 38-184 (700)
20 PRK07764 DNA polymerase III su 97.4 0.0003 6.5E-09 76.1 6.5 150 181-351 36-190 (824)
21 PRK07940 DNA polymerase III su 97.3 0.00047 1E-08 68.7 6.5 142 181-350 35-186 (394)
22 PRK14956 DNA polymerase III su 97.3 0.00019 4.2E-09 72.7 3.5 146 183-352 41-192 (484)
23 PRK14951 DNA polymerase III su 97.3 0.00023 5.1E-09 74.5 4.1 152 182-351 38-194 (618)
24 PRK14964 DNA polymerase III su 97.2 0.00083 1.8E-08 68.6 7.6 131 182-338 35-176 (491)
25 COG2812 DnaX DNA polymerase II 97.2 0.00034 7.3E-09 71.5 4.6 136 181-338 37-179 (515)
26 PRK14962 DNA polymerase III su 97.2 0.0019 4.1E-08 66.0 9.8 147 182-351 36-187 (472)
27 cd00009 AAA The AAA+ (ATPases 97.2 0.0012 2.6E-08 54.5 7.1 26 182-207 19-44 (151)
28 PRK06645 DNA polymerase III su 97.2 0.00059 1.3E-08 70.1 6.0 141 183-338 44-188 (507)
29 COG0470 HolB ATPase involved i 97.1 0.0016 3.5E-08 62.4 8.2 130 181-336 23-167 (325)
30 PRK07994 DNA polymerase III su 97.1 0.00064 1.4E-08 71.5 5.5 136 182-338 38-179 (647)
31 PRK12402 replication factor C 97.1 0.0042 9.1E-08 60.1 10.4 60 266-338 124-185 (337)
32 TIGR00635 ruvB Holliday juncti 97.0 0.0024 5.2E-08 61.1 8.4 119 184-337 32-159 (305)
33 PRK05707 DNA polymerase III su 97.0 0.0016 3.5E-08 63.4 7.0 141 181-351 21-176 (328)
34 PRK14957 DNA polymerase III su 97.0 0.0016 3.5E-08 67.4 7.3 136 182-338 38-179 (546)
35 PLN03025 replication factor C 97.0 0.0022 4.7E-08 62.2 7.6 130 184-351 36-169 (319)
36 PF05496 RuvB_N: Holliday junc 97.0 0.003 6.5E-08 57.9 7.8 119 183-335 51-177 (233)
37 PRK05563 DNA polymerase III su 97.0 0.0015 3.3E-08 68.1 6.7 145 182-351 38-189 (559)
38 PRK00080 ruvB Holliday junctio 97.0 0.0028 6.1E-08 61.6 8.1 120 183-337 52-180 (328)
39 PHA02544 44 clamp loader, smal 97.0 0.0034 7.3E-08 60.4 8.6 110 183-336 44-159 (316)
40 PRK14969 DNA polymerase III su 96.9 0.0011 2.4E-08 68.6 5.4 138 182-338 38-179 (527)
41 PRK14960 DNA polymerase III su 96.9 0.00098 2.1E-08 69.9 4.8 135 182-338 37-178 (702)
42 PF00158 Sigma54_activat: Sigm 96.9 0.00019 4E-09 63.2 -0.5 121 173-316 13-142 (168)
43 TIGR02881 spore_V_K stage V sp 96.9 0.0011 2.4E-08 62.3 4.6 26 184-209 44-69 (261)
44 PRK08451 DNA polymerase III su 96.9 0.0075 1.6E-07 62.3 10.8 144 182-351 36-187 (535)
45 TIGR00763 lon ATP-dependent pr 96.9 0.002 4.3E-08 69.8 6.8 131 184-338 349-493 (775)
46 PRK14949 DNA polymerase III su 96.9 0.0007 1.5E-08 73.0 3.2 135 182-338 38-179 (944)
47 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0063 1.4E-07 66.6 10.1 150 185-352 599-783 (852)
48 COG0714 MoxR-like ATPases [Gen 96.8 0.0029 6.3E-08 61.6 6.8 131 179-337 40-189 (329)
49 PRK11034 clpA ATP-dependent Cl 96.8 0.0034 7.4E-08 67.5 7.8 145 184-352 490-669 (758)
50 PRK14952 DNA polymerase III su 96.8 0.0069 1.5E-07 63.3 9.8 149 182-351 35-188 (584)
51 PRK08691 DNA polymerase III su 96.8 0.0021 4.5E-08 67.9 5.8 134 182-337 38-178 (709)
52 PRK14963 DNA polymerase III su 96.7 0.0034 7.3E-08 64.6 7.1 138 183-351 37-186 (504)
53 PRK06871 DNA polymerase III su 96.7 0.0056 1.2E-07 59.5 8.1 141 181-352 23-178 (325)
54 PF12774 AAA_6: Hydrolytic ATP 96.7 0.0042 9.1E-08 57.5 6.7 131 181-349 31-177 (231)
55 PRK06090 DNA polymerase III su 96.7 0.0062 1.3E-07 59.0 8.1 142 181-352 24-179 (319)
56 TIGR02639 ClpA ATP-dependent C 96.7 0.0069 1.5E-07 65.3 9.1 147 184-352 486-665 (731)
57 PRK09111 DNA polymerase III su 96.7 0.0047 1E-07 64.8 7.6 141 181-352 45-203 (598)
58 PRK05564 DNA polymerase III su 96.7 0.0026 5.6E-08 61.4 5.3 134 181-351 25-163 (313)
59 PRK08699 DNA polymerase III su 96.7 0.0039 8.5E-08 60.6 6.6 149 180-351 19-183 (325)
60 PRK09112 DNA polymerase III su 96.6 0.0019 4.1E-08 63.5 3.7 150 181-351 44-211 (351)
61 PRK07133 DNA polymerase III su 96.6 0.0043 9.3E-08 66.0 6.4 137 181-338 39-178 (725)
62 PRK08769 DNA polymerase III su 96.5 0.0086 1.9E-07 58.0 7.9 144 181-352 25-184 (319)
63 PRK05896 DNA polymerase III su 96.5 0.0043 9.4E-08 64.7 6.1 135 182-338 38-179 (605)
64 COG2256 MGS1 ATPase related to 96.5 0.0045 9.7E-08 60.9 5.8 122 175-338 39-164 (436)
65 TIGR00678 holB DNA polymerase 96.5 0.0022 4.7E-08 57.1 3.3 150 182-352 14-167 (188)
66 PRK14970 DNA polymerase III su 96.5 0.021 4.5E-07 56.3 10.4 125 183-337 40-167 (367)
67 PRK06305 DNA polymerase III su 96.5 0.0034 7.4E-08 63.8 4.9 136 182-338 39-181 (451)
68 CHL00181 cbbX CbbX; Provisiona 96.5 0.0028 6E-08 60.6 4.0 139 185-358 62-218 (287)
69 PRK07471 DNA polymerase III su 96.4 0.01 2.2E-07 58.7 7.9 157 181-352 40-212 (365)
70 PRK00440 rfc replication facto 96.4 0.041 8.9E-07 52.7 11.6 117 184-338 40-162 (319)
71 PRK06964 DNA polymerase III su 96.3 0.0066 1.4E-07 59.4 5.6 156 181-351 20-202 (342)
72 PRK14955 DNA polymerase III su 96.3 0.0034 7.3E-08 62.8 3.7 72 266-351 126-197 (397)
73 PRK06647 DNA polymerase III su 96.3 0.0044 9.5E-08 64.6 4.4 134 182-337 38-178 (563)
74 PRK14954 DNA polymerase III su 96.2 0.011 2.4E-07 62.2 7.3 72 266-351 126-197 (620)
75 PRK07993 DNA polymerase III su 96.2 0.02 4.4E-07 55.9 8.4 141 181-351 23-178 (334)
76 PRK04195 replication factor C 96.1 0.041 8.8E-07 56.5 10.7 112 182-338 39-161 (482)
77 PRK14948 DNA polymerase III su 96.1 0.012 2.6E-07 62.1 6.9 135 182-337 38-180 (620)
78 TIGR02397 dnaX_nterm DNA polym 96.1 0.014 3.1E-07 56.9 7.0 127 183-337 37-176 (355)
79 PRK08058 DNA polymerase III su 96.1 0.01 2.2E-07 57.8 5.8 129 181-338 27-170 (329)
80 PRK10865 protein disaggregatio 96.1 0.012 2.7E-07 64.4 6.9 148 184-352 600-782 (857)
81 KOG0989|consensus 96.0 0.0027 5.9E-08 60.3 1.5 57 268-338 130-189 (346)
82 PRK06893 DNA replication initi 96.0 0.01 2.2E-07 54.7 5.3 24 184-207 41-64 (229)
83 PRK07261 topology modulation p 96.0 0.011 2.5E-07 51.9 5.3 22 185-206 3-24 (171)
84 PRK13407 bchI magnesium chelat 96.0 0.0056 1.2E-07 59.7 3.5 142 181-333 28-197 (334)
85 PRK05917 DNA polymerase III su 96.0 0.015 3.3E-07 55.5 6.2 130 181-337 18-154 (290)
86 smart00763 AAA_PrkA PrkA AAA d 95.9 0.009 2E-07 58.6 4.6 29 182-210 78-106 (361)
87 PRK14953 DNA polymerase III su 95.9 0.01 2.2E-07 61.0 4.9 147 182-352 38-190 (486)
88 PRK14959 DNA polymerase III su 95.9 0.046 9.9E-07 57.5 9.8 134 182-338 38-179 (624)
89 cd01131 PilT Pilus retraction 95.9 0.027 5.8E-07 50.7 7.2 23 185-207 4-26 (198)
90 PRK05818 DNA polymerase III su 95.9 0.023 5E-07 53.3 6.8 131 180-337 5-147 (261)
91 PRK14971 DNA polymerase III su 95.9 0.026 5.7E-07 59.6 7.9 149 182-351 39-191 (614)
92 PF13207 AAA_17: AAA domain; P 95.8 0.005 1.1E-07 50.2 2.1 22 185-206 2-23 (121)
93 PRK13342 recombination factor 95.8 0.021 4.6E-07 57.3 6.8 24 183-206 37-60 (413)
94 PRK08084 DNA replication initi 95.7 0.017 3.6E-07 53.5 5.4 25 183-207 46-70 (235)
95 TIGR03574 selen_PSTK L-seryl-t 95.6 0.0092 2E-07 55.6 3.2 24 185-208 2-25 (249)
96 PRK10787 DNA-binding ATP-depen 95.6 0.052 1.1E-06 58.9 9.2 129 184-337 351-493 (784)
97 PTZ00088 adenylate kinase 1; P 95.6 0.015 3.2E-07 53.8 4.2 23 185-207 9-31 (229)
98 PRK14965 DNA polymerase III su 95.6 0.028 6E-07 59.0 6.8 146 182-351 38-189 (576)
99 TIGR02030 BchI-ChlI magnesium 95.5 0.022 4.7E-07 55.7 5.5 140 182-333 25-200 (337)
100 PRK14088 dnaA chromosomal repl 95.5 0.0087 1.9E-07 60.7 2.5 145 183-360 131-287 (440)
101 COG1419 FlhF Flagellar GTP-bin 95.4 0.033 7.2E-07 55.2 6.2 95 182-276 203-322 (407)
102 PRK06217 hypothetical protein; 95.4 0.015 3.2E-07 51.5 3.5 22 185-206 4-25 (183)
103 PRK05642 DNA replication initi 95.4 0.026 5.7E-07 52.2 5.2 24 183-206 46-69 (234)
104 KOG0741|consensus 95.4 0.021 4.6E-07 58.0 4.8 62 146-207 212-281 (744)
105 PRK07399 DNA polymerase III su 95.3 0.039 8.4E-07 53.4 6.5 155 182-352 26-194 (314)
106 TIGR02902 spore_lonB ATP-depen 95.2 0.045 9.7E-07 56.9 7.0 148 182-337 86-263 (531)
107 TIGR00041 DTMP_kinase thymidyl 95.2 0.03 6.5E-07 49.7 5.1 24 185-208 6-29 (195)
108 PRK00149 dnaA chromosomal repl 95.2 0.026 5.5E-07 57.4 5.1 147 183-364 149-308 (450)
109 KOG0730|consensus 95.2 0.041 8.8E-07 57.3 6.4 174 146-354 427-620 (693)
110 TIGR00362 DnaA chromosomal rep 95.1 0.023 5E-07 56.9 4.3 146 183-363 137-295 (405)
111 PRK14950 DNA polymerase III su 95.1 0.059 1.3E-06 56.7 7.4 61 266-337 119-179 (585)
112 KOG0733|consensus 95.1 0.031 6.7E-07 57.8 5.0 73 179-279 542-615 (802)
113 TIGR01351 adk adenylate kinase 95.0 0.025 5.5E-07 51.2 4.0 22 185-206 2-23 (210)
114 CHL00095 clpC Clp protease ATP 95.0 0.058 1.3E-06 59.0 7.4 105 184-306 541-651 (821)
115 smart00382 AAA ATPases associa 95.0 0.01 2.2E-07 48.2 1.1 26 183-208 3-28 (148)
116 PRK05342 clpX ATP-dependent pr 95.0 0.048 1E-06 54.8 6.1 25 182-206 108-132 (412)
117 TIGR00382 clpX endopeptidase C 94.9 0.067 1.4E-06 53.7 7.0 25 182-206 116-140 (413)
118 PRK08118 topology modulation p 94.9 0.012 2.7E-07 51.5 1.5 23 184-206 3-25 (167)
119 PF13671 AAA_33: AAA domain; P 94.9 0.012 2.6E-07 49.3 1.4 22 185-206 2-23 (143)
120 cd01130 VirB11-like_ATPase Typ 94.8 0.018 4E-07 51.2 2.3 36 171-206 14-49 (186)
121 COG0542 clpA ATP-binding subun 94.8 0.032 7E-07 59.7 4.4 113 184-318 523-643 (786)
122 PF13238 AAA_18: AAA domain; P 94.7 0.018 4E-07 47.0 2.1 22 185-206 1-22 (129)
123 TIGR02031 BchD-ChlD magnesium 94.7 0.047 1E-06 57.4 5.5 126 183-332 17-154 (589)
124 PF00308 Bac_DnaA: Bacterial d 94.7 0.036 7.8E-07 50.8 4.0 144 184-362 36-192 (219)
125 CHL00081 chlI Mg-protoporyphyr 94.6 0.042 9.1E-07 53.9 4.5 144 183-332 39-212 (350)
126 KOG0733|consensus 94.6 0.019 4.2E-07 59.2 2.1 26 181-206 222-247 (802)
127 TIGR02782 TrbB_P P-type conjug 94.5 0.03 6.4E-07 53.9 3.2 37 171-207 121-157 (299)
128 COG3842 PotA ABC-type spermidi 94.5 0.017 3.8E-07 56.5 1.6 25 181-205 28-54 (352)
129 PF01078 Mg_chelatase: Magnesi 94.5 0.013 2.8E-07 53.1 0.6 120 179-312 19-153 (206)
130 TIGR03346 chaperone_ClpB ATP-d 94.4 0.12 2.6E-06 56.9 7.9 116 184-318 597-717 (852)
131 COG3839 MalK ABC-type sugar tr 94.3 0.02 4.4E-07 55.7 1.6 21 185-205 32-52 (338)
132 COG1126 GlnQ ABC-type polar am 94.3 0.022 4.8E-07 51.8 1.6 21 183-203 29-49 (240)
133 TIGR02928 orc1/cdc6 family rep 94.3 0.22 4.8E-06 48.7 8.9 26 183-208 41-66 (365)
134 PRK05703 flhF flagellar biosyn 94.3 0.11 2.4E-06 52.4 6.8 94 183-290 222-326 (424)
135 cd02019 NK Nucleoside/nucleoti 94.3 0.03 6.5E-07 41.4 2.1 22 185-206 2-23 (69)
136 PHA02774 E1; Provisional 94.3 0.17 3.7E-06 52.6 8.2 25 182-206 434-458 (613)
137 PLN02842 nucleotide kinase 94.2 0.098 2.1E-06 53.6 6.3 21 186-206 1-21 (505)
138 PF13173 AAA_14: AAA domain 94.1 0.069 1.5E-06 44.3 4.3 116 183-338 3-123 (128)
139 COG1116 TauB ABC-type nitrate/ 94.1 0.024 5.2E-07 52.6 1.6 23 184-206 31-53 (248)
140 PRK15424 propionate catabolism 94.0 0.077 1.7E-06 55.1 5.2 124 178-316 238-371 (538)
141 PRK13833 conjugal transfer pro 94.0 0.051 1.1E-06 52.8 3.7 35 173-207 135-169 (323)
142 PRK03839 putative kinase; Prov 94.0 0.032 6.8E-07 49.1 2.1 23 185-207 3-25 (180)
143 PF03215 Rad17: Rad17 cell cyc 94.0 0.035 7.6E-07 57.3 2.6 36 172-207 32-70 (519)
144 PRK15455 PrkA family serine pr 94.0 0.093 2E-06 54.6 5.6 28 182-209 103-130 (644)
145 TIGR01420 pilT_fam pilus retra 93.9 0.21 4.5E-06 49.0 7.9 34 174-207 113-147 (343)
146 COG1102 Cmk Cytidylate kinase 93.9 0.031 6.8E-07 48.6 1.7 23 185-207 3-25 (179)
147 TIGR01313 therm_gnt_kin carboh 93.9 0.032 6.9E-07 48.2 1.8 22 185-206 1-22 (163)
148 TIGR01360 aden_kin_iso1 adenyl 93.9 0.036 7.7E-07 48.7 2.1 23 184-206 5-27 (188)
149 TIGR03345 VI_ClpV1 type VI sec 93.8 0.13 2.9E-06 56.4 6.8 25 183-207 209-233 (852)
150 TIGR02322 phosphon_PhnN phosph 93.8 0.033 7.1E-07 48.9 1.8 23 185-207 4-26 (179)
151 PF12775 AAA_7: P-loop contain 93.8 0.019 4E-07 54.5 0.1 41 161-201 12-52 (272)
152 PRK10078 ribose 1,5-bisphospho 93.7 0.031 6.6E-07 49.6 1.5 22 185-206 5-26 (186)
153 COG2805 PilT Tfp pilus assembl 93.7 0.051 1.1E-06 51.8 3.0 37 173-209 115-152 (353)
154 cd00464 SK Shikimate kinase (S 93.7 0.039 8.5E-07 46.8 2.1 22 185-206 2-23 (154)
155 PF03029 ATP_bind_1: Conserved 93.7 0.048 1E-06 50.7 2.7 38 187-233 1-38 (238)
156 TIGR01359 UMP_CMP_kin_fam UMP- 93.7 0.033 7.1E-07 49.0 1.5 22 185-206 2-23 (183)
157 PRK14530 adenylate kinase; Pro 93.6 0.04 8.6E-07 50.1 2.1 24 184-207 5-28 (215)
158 PRK13851 type IV secretion sys 93.6 0.039 8.5E-07 54.1 2.1 36 171-206 151-186 (344)
159 PLN00020 ribulose bisphosphate 93.6 0.046 1E-06 53.8 2.6 127 181-331 147-293 (413)
160 PRK11388 DNA-binding transcrip 93.6 0.11 2.4E-06 55.1 5.7 119 175-316 341-465 (638)
161 TIGR00368 Mg chelatase-related 93.5 0.079 1.7E-06 54.5 4.3 146 175-334 204-387 (499)
162 TIGR02524 dot_icm_DotB Dot/Icm 93.5 0.21 4.5E-06 49.3 7.0 33 175-207 126-159 (358)
163 PF13555 AAA_29: P-loop contai 93.5 0.054 1.2E-06 39.4 2.1 22 185-206 26-47 (62)
164 COG2204 AtoC Response regulato 93.4 0.052 1.1E-06 55.0 2.7 122 174-315 156-283 (464)
165 PRK06851 hypothetical protein; 93.4 1.1 2.3E-05 44.4 11.8 43 165-207 196-239 (367)
166 PRK13900 type IV secretion sys 93.4 0.047 1E-06 53.3 2.2 35 172-206 150-184 (332)
167 cd03115 SRP The signal recogni 93.4 0.16 3.6E-06 44.2 5.5 25 185-209 3-27 (173)
168 PRK00131 aroK shikimate kinase 93.4 0.048 1E-06 47.1 2.1 24 183-206 5-28 (175)
169 PRK06762 hypothetical protein; 93.4 0.048 1E-06 47.2 2.1 22 185-206 5-26 (166)
170 TIGR02442 Cob-chelat-sub cobal 93.3 0.088 1.9E-06 55.9 4.3 138 183-332 26-194 (633)
171 PRK07276 DNA polymerase III su 93.3 0.35 7.6E-06 46.3 8.0 71 265-350 102-172 (290)
172 COG1136 SalX ABC-type antimicr 93.3 0.042 9.2E-07 50.5 1.6 21 184-204 33-53 (226)
173 TIGR02329 propionate_PrpR prop 93.3 0.1 2.2E-06 54.2 4.5 155 175-352 228-404 (526)
174 PRK13949 shikimate kinase; Pro 93.3 0.039 8.5E-07 48.4 1.3 24 184-207 3-26 (169)
175 COG0563 Adk Adenylate kinase a 93.2 0.052 1.1E-06 48.1 2.1 22 185-206 3-24 (178)
176 PF08433 KTI12: Chromatin asso 93.2 0.084 1.8E-06 50.0 3.6 24 185-208 4-27 (270)
177 cd02021 GntK Gluconate kinase 93.2 0.04 8.7E-07 46.8 1.2 22 185-206 2-23 (150)
178 PRK13947 shikimate kinase; Pro 93.1 0.046 9.9E-07 47.5 1.6 24 184-207 3-26 (171)
179 KOG2028|consensus 93.1 0.1 2.2E-06 51.1 3.9 128 175-339 153-283 (554)
180 PRK08233 hypothetical protein; 93.1 0.046 1E-06 47.7 1.5 23 185-207 6-28 (182)
181 COG4088 Predicted nucleotide k 93.0 0.07 1.5E-06 48.3 2.6 25 185-209 4-28 (261)
182 PRK14531 adenylate kinase; Pro 93.0 0.051 1.1E-06 48.1 1.7 23 184-206 4-26 (183)
183 COG1117 PstB ABC-type phosphat 93.0 0.051 1.1E-06 49.5 1.7 22 185-206 36-57 (253)
184 PRK14532 adenylate kinase; Pro 93.0 0.045 9.8E-07 48.4 1.4 22 185-206 3-24 (188)
185 PRK13894 conjugal transfer ATP 93.0 0.092 2E-06 51.0 3.5 34 173-206 139-172 (319)
186 KOG0991|consensus 93.0 0.061 1.3E-06 49.6 2.1 25 182-206 48-72 (333)
187 COG3829 RocR Transcriptional r 92.9 0.042 9.1E-07 56.2 1.2 117 178-315 264-388 (560)
188 PF07724 AAA_2: AAA domain (Cd 92.9 0.066 1.4E-06 47.1 2.2 24 184-207 5-28 (171)
189 smart00350 MCM minichromosome 92.9 0.32 6.9E-06 50.3 7.6 137 184-347 238-397 (509)
190 cd02023 UMPK Uridine monophosp 92.9 0.061 1.3E-06 48.1 2.0 22 185-206 2-23 (198)
191 PF00485 PRK: Phosphoribulokin 92.9 0.053 1.1E-06 48.5 1.6 25 185-209 2-26 (194)
192 cd02020 CMPK Cytidine monophos 92.9 0.056 1.2E-06 45.3 1.7 22 185-206 2-23 (147)
193 PF10662 PduV-EutP: Ethanolami 92.8 0.051 1.1E-06 46.4 1.4 22 183-204 2-23 (143)
194 cd00227 CPT Chloramphenicol (C 92.8 0.063 1.4E-06 47.1 2.0 22 185-206 5-26 (175)
195 PF13401 AAA_22: AAA domain; P 92.8 0.073 1.6E-06 43.7 2.3 28 182-209 4-31 (131)
196 KOG0745|consensus 92.8 0.1 2.3E-06 52.0 3.6 85 182-288 226-313 (564)
197 TIGR02880 cbbX_cfxQ probable R 92.7 0.063 1.4E-06 51.2 2.0 29 182-210 58-86 (284)
198 COG1125 OpuBA ABC-type proline 92.7 0.056 1.2E-06 50.5 1.6 24 183-206 28-51 (309)
199 PRK02496 adk adenylate kinase; 92.6 0.071 1.5E-06 47.0 2.1 22 185-206 4-25 (184)
200 COG1084 Predicted GTPase [Gene 92.6 0.46 1E-05 45.9 7.6 71 111-204 117-190 (346)
201 cd01428 ADK Adenylate kinase ( 92.6 0.058 1.3E-06 47.7 1.5 22 185-206 2-23 (194)
202 PRK05480 uridine/cytidine kina 92.6 0.07 1.5E-06 48.1 2.0 22 185-206 9-30 (209)
203 PRK07132 DNA polymerase III su 92.6 0.79 1.7E-05 44.1 9.3 138 181-351 17-160 (299)
204 PF00910 RNA_helicase: RNA hel 92.5 0.1 2.2E-06 42.1 2.6 25 185-209 1-25 (107)
205 PRK05541 adenylylsulfate kinas 92.4 0.084 1.8E-06 46.2 2.3 24 184-207 9-32 (176)
206 PF00448 SRP54: SRP54-type pro 92.4 0.087 1.9E-06 47.5 2.4 25 184-208 3-27 (196)
207 COG1221 PspF Transcriptional r 92.4 0.14 2.9E-06 51.1 3.9 140 174-335 93-245 (403)
208 cd00071 GMPK Guanosine monopho 92.3 0.073 1.6E-06 45.0 1.7 22 185-206 2-23 (137)
209 PRK12726 flagellar biosynthesi 92.3 0.25 5.3E-06 49.1 5.4 95 182-290 206-312 (407)
210 cd00820 PEPCK_HprK Phosphoenol 92.2 0.067 1.4E-06 43.4 1.2 21 183-203 16-36 (107)
211 PRK08181 transposase; Validate 92.2 0.11 2.5E-06 49.1 3.0 87 180-290 104-194 (269)
212 PF00437 T2SE: Type II/IV secr 92.1 0.072 1.6E-06 50.1 1.6 33 175-207 120-152 (270)
213 PRK06547 hypothetical protein; 92.1 0.087 1.9E-06 46.4 2.0 22 185-206 18-39 (172)
214 PRK05537 bifunctional sulfate 92.1 0.22 4.7E-06 52.2 5.2 25 184-208 394-418 (568)
215 cd01672 TMPK Thymidine monopho 92.1 0.1 2.2E-06 45.9 2.5 24 185-208 3-26 (200)
216 cd02025 PanK Pantothenate kina 92.1 0.093 2E-06 48.1 2.2 23 186-208 3-25 (220)
217 TIGR00150 HI0065_YjeE ATPase, 92.1 0.078 1.7E-06 44.7 1.6 34 175-208 15-48 (133)
218 TIGR00235 udk uridine kinase. 92.1 0.09 2E-06 47.5 2.1 23 185-207 9-31 (207)
219 PF01580 FtsK_SpoIIIE: FtsK/Sp 92.1 0.22 4.8E-06 44.7 4.6 47 184-237 40-86 (205)
220 PRK13764 ATPase; Provisional 91.9 0.49 1.1E-05 49.8 7.4 30 178-207 253-282 (602)
221 PRK00625 shikimate kinase; Pro 91.9 0.1 2.2E-06 46.1 2.0 23 185-207 3-25 (173)
222 COG1219 ClpX ATP-dependent pro 91.8 0.082 1.8E-06 50.8 1.6 27 181-207 96-122 (408)
223 PF05729 NACHT: NACHT domain 91.8 0.12 2.6E-06 43.9 2.5 25 185-209 3-27 (166)
224 COG1222 RPT1 ATP-dependent 26S 91.8 0.16 3.4E-06 49.6 3.4 137 162-326 163-308 (406)
225 TIGR03263 guanyl_kin guanylate 91.8 0.082 1.8E-06 46.3 1.4 22 185-206 4-25 (180)
226 PRK14528 adenylate kinase; Pro 91.8 0.09 2E-06 46.8 1.7 22 185-206 4-25 (186)
227 cd02037 MRP-like MRP (Multiple 91.8 0.48 1E-05 41.1 6.3 72 188-278 6-78 (169)
228 PF00406 ADK: Adenylate kinase 91.7 0.093 2E-06 44.7 1.7 20 187-206 1-20 (151)
229 cd02027 APSK Adenosine 5'-phos 91.7 0.11 2.4E-06 44.5 2.1 23 185-207 2-24 (149)
230 PF13191 AAA_16: AAA ATPase do 91.7 0.12 2.7E-06 44.9 2.4 26 183-208 25-50 (185)
231 PRK06696 uridine kinase; Valid 91.6 0.12 2.7E-06 47.2 2.5 24 185-208 25-48 (223)
232 PF13245 AAA_19: Part of AAA d 91.5 0.19 4.1E-06 38.0 3.0 24 183-206 10-35 (76)
233 PRK00300 gmk guanylate kinase; 91.5 0.1 2.2E-06 46.7 1.8 22 185-206 8-29 (205)
234 PTZ00112 origin recognition co 91.5 0.5 1.1E-05 51.6 7.1 88 185-279 784-880 (1164)
235 PRK13808 adenylate kinase; Pro 91.5 0.4 8.7E-06 46.8 6.0 22 185-206 3-24 (333)
236 PRK14527 adenylate kinase; Pro 91.5 0.098 2.1E-06 46.6 1.6 22 185-206 9-30 (191)
237 PRK14738 gmk guanylate kinase; 91.5 0.098 2.1E-06 47.3 1.6 23 183-205 14-36 (206)
238 PTZ00301 uridine kinase; Provi 91.5 0.13 2.8E-06 46.9 2.4 24 185-208 6-29 (210)
239 PRK04040 adenylate kinase; Pro 91.5 0.11 2.5E-06 46.3 2.0 23 185-207 5-27 (188)
240 PRK09435 membrane ATPase/prote 91.4 0.21 4.5E-06 48.8 3.9 48 184-240 58-106 (332)
241 PRK00279 adk adenylate kinase; 91.4 0.1 2.2E-06 47.4 1.7 23 185-207 3-25 (215)
242 cd01129 PulE-GspE PulE/GspE Th 91.4 0.14 3.1E-06 48.2 2.7 33 175-207 72-105 (264)
243 COG2804 PulE Type II secretory 91.3 0.14 3.1E-06 52.1 2.7 32 175-206 250-282 (500)
244 PRK13975 thymidylate kinase; P 91.3 0.12 2.7E-06 45.8 2.1 23 185-207 5-27 (196)
245 COG4525 TauB ABC-type taurine 91.3 0.11 2.3E-06 46.9 1.6 26 181-206 30-55 (259)
246 PRK03992 proteasome-activating 91.3 0.12 2.6E-06 51.5 2.2 26 181-206 164-189 (389)
247 KOG1970|consensus 91.2 0.11 2.3E-06 53.3 1.8 23 185-207 113-135 (634)
248 TIGR03689 pup_AAA proteasome A 91.2 0.11 2.5E-06 53.4 2.0 27 181-207 215-241 (512)
249 COG4178 ABC-type uncharacteriz 91.2 0.29 6.3E-06 51.2 4.9 22 183-204 420-441 (604)
250 TIGR01242 26Sp45 26S proteasom 91.1 0.1 2.3E-06 51.4 1.6 26 181-206 155-180 (364)
251 PRK14086 dnaA chromosomal repl 91.1 0.44 9.6E-06 50.1 6.1 26 183-208 315-340 (617)
252 PF03193 DUF258: Protein of un 91.0 0.15 3.2E-06 44.5 2.2 30 175-205 29-58 (161)
253 cd02028 UMPK_like Uridine mono 91.0 0.15 3.2E-06 45.2 2.3 24 185-208 2-25 (179)
254 PF08298 AAA_PrkA: PrkA AAA do 91.0 0.29 6.3E-06 47.9 4.5 25 185-209 91-115 (358)
255 COG0703 AroK Shikimate kinase 91.0 0.11 2.4E-06 45.7 1.5 24 184-207 4-27 (172)
256 PF14532 Sigma54_activ_2: Sigm 90.9 0.049 1.1E-06 45.9 -0.9 35 170-204 9-43 (138)
257 PRK05057 aroK shikimate kinase 90.9 0.13 2.9E-06 45.1 1.8 23 184-206 6-28 (172)
258 PRK09270 nucleoside triphospha 90.9 0.18 3.9E-06 46.3 2.8 25 185-209 36-60 (229)
259 PLN02200 adenylate kinase fami 90.9 0.12 2.6E-06 47.8 1.6 22 185-206 46-67 (234)
260 KOG1533|consensus 90.8 0.26 5.6E-06 45.5 3.6 39 184-231 4-42 (290)
261 CHL00195 ycf46 Ycf46; Provisio 90.7 0.12 2.6E-06 53.1 1.6 26 181-206 258-283 (489)
262 PRK03731 aroL shikimate kinase 90.7 0.13 2.9E-06 44.6 1.7 25 183-207 3-27 (171)
263 PF08477 Miro: Miro-like prote 90.7 0.15 3.2E-06 41.0 1.9 20 185-204 2-21 (119)
264 PRK10536 hypothetical protein; 90.7 0.35 7.6E-06 45.4 4.5 157 179-351 71-260 (262)
265 TIGR02173 cyt_kin_arch cytidyl 90.7 0.12 2.6E-06 44.6 1.3 22 185-206 3-24 (171)
266 PTZ00454 26S protease regulato 90.7 0.13 2.8E-06 51.5 1.7 26 181-206 178-203 (398)
267 KOG0727|consensus 90.6 0.19 4E-06 47.0 2.5 42 164-205 169-212 (408)
268 TIGR02788 VirB11 P-type DNA tr 90.6 0.13 2.8E-06 49.7 1.6 34 173-206 135-168 (308)
269 PRK00698 tmk thymidylate kinas 90.6 0.18 3.9E-06 44.9 2.5 24 185-208 6-29 (205)
270 PF00005 ABC_tran: ABC transpo 90.6 0.11 2.4E-06 43.1 1.0 22 185-206 14-35 (137)
271 COG1124 DppF ABC-type dipeptid 90.6 0.13 2.8E-06 47.6 1.5 22 184-205 35-56 (252)
272 PF13086 AAA_11: AAA domain; P 90.5 0.21 4.4E-06 44.9 2.8 22 185-206 20-41 (236)
273 PRK00091 miaA tRNA delta(2)-is 90.5 0.14 3.1E-06 49.4 1.8 23 185-207 7-29 (307)
274 PRK11545 gntK gluconate kinase 90.5 0.15 3.3E-06 44.3 1.8 20 188-207 1-20 (163)
275 PRK12727 flagellar biosynthesi 90.5 0.62 1.3E-05 48.2 6.5 107 182-300 350-468 (559)
276 KOG0736|consensus 90.5 1.1 2.4E-05 47.9 8.3 27 177-203 700-726 (953)
277 PRK12724 flagellar biosynthesi 90.4 0.63 1.4E-05 46.8 6.3 23 184-206 225-247 (432)
278 PRK09825 idnK D-gluconate kina 90.4 0.16 3.4E-06 44.9 1.9 22 185-206 6-27 (176)
279 TIGR02639 ClpA ATP-dependent C 90.4 0.32 7E-06 52.6 4.6 26 182-207 203-228 (731)
280 PRK14737 gmk guanylate kinase; 90.4 0.15 3.3E-06 45.5 1.7 22 185-206 7-28 (186)
281 PRK00889 adenylylsulfate kinas 90.3 0.18 3.9E-06 44.1 2.2 23 185-207 7-29 (175)
282 PRK05022 anaerobic nitric oxid 90.3 0.27 5.9E-06 50.8 3.8 120 174-316 202-330 (509)
283 PHA02530 pseT polynucleotide k 90.3 0.14 3E-06 48.8 1.5 22 185-206 5-26 (300)
284 PF07726 AAA_3: ATPase family 90.3 0.083 1.8E-06 44.3 -0.0 99 185-317 2-111 (131)
285 PRK04182 cytidylate kinase; Pr 90.3 0.13 2.9E-06 44.6 1.3 23 185-207 3-25 (180)
286 PF02456 Adeno_IVa2: Adenoviru 90.2 0.37 8E-06 46.2 4.2 19 186-204 91-109 (369)
287 PRK14529 adenylate kinase; Pro 90.2 0.16 3.4E-06 46.8 1.8 23 185-207 3-25 (223)
288 PRK07667 uridine kinase; Provi 90.2 0.18 3.8E-06 45.2 2.0 24 185-208 20-43 (193)
289 PF03205 MobB: Molybdopterin g 90.2 0.21 4.5E-06 42.4 2.4 24 185-208 3-26 (140)
290 COG4619 ABC-type uncharacteriz 90.1 0.16 3.5E-06 44.7 1.6 22 185-206 32-53 (223)
291 PF03266 NTPase_1: NTPase; In 90.1 0.22 4.7E-06 43.8 2.5 27 267-293 95-126 (168)
292 PF01926 MMR_HSR1: 50S ribosom 90.1 0.16 3.5E-06 41.0 1.5 19 185-203 2-20 (116)
293 PRK14526 adenylate kinase; Pro 90.1 0.18 3.9E-06 46.0 2.0 22 185-206 3-24 (211)
294 COG1703 ArgK Putative periplas 90.0 0.43 9.3E-06 45.6 4.5 49 183-240 52-101 (323)
295 PRK10436 hypothetical protein; 90.0 0.2 4.3E-06 51.1 2.5 32 175-206 210-242 (462)
296 PF02562 PhoH: PhoH-like prote 90.0 0.67 1.5E-05 42.1 5.6 32 178-211 15-46 (205)
297 PRK06526 transposase; Provisio 90.0 0.19 4.1E-06 47.2 2.1 87 180-290 96-186 (254)
298 TIGR00390 hslU ATP-dependent p 89.9 0.16 3.4E-06 51.0 1.6 24 183-206 48-71 (441)
299 PRK13946 shikimate kinase; Pro 89.8 0.19 4E-06 44.6 1.8 25 183-207 11-35 (184)
300 PF03308 ArgK: ArgK protein; 89.8 0.3 6.6E-06 45.7 3.3 48 184-240 31-79 (266)
301 cd03264 ABC_drug_resistance_li 89.8 0.17 3.7E-06 45.6 1.6 22 185-206 28-49 (211)
302 KOG0743|consensus 89.8 0.14 3.1E-06 51.2 1.2 26 181-206 234-259 (457)
303 PRK10820 DNA-binding transcrip 89.7 0.62 1.3E-05 48.3 5.9 156 174-352 219-395 (520)
304 COG2884 FtsE Predicted ATPase 89.7 0.19 4.1E-06 45.1 1.8 24 183-206 29-52 (223)
305 PTZ00361 26 proteosome regulat 89.7 0.18 3.9E-06 51.1 1.8 26 181-206 216-241 (438)
306 cd03255 ABC_MJ0796_Lo1CDE_FtsE 89.6 0.17 3.8E-06 45.7 1.6 23 184-206 32-54 (218)
307 PRK15177 Vi polysaccharide exp 89.6 0.18 3.9E-06 45.8 1.6 23 184-206 15-37 (213)
308 COG0194 Gmk Guanylate kinase [ 89.6 0.2 4.3E-06 44.6 1.8 22 185-206 7-28 (191)
309 cd01120 RecA-like_NTPases RecA 89.6 0.25 5.4E-06 41.6 2.4 24 185-208 2-25 (165)
310 TIGR02525 plasmid_TraJ plasmid 89.6 0.28 6E-06 48.7 3.0 28 181-208 147-175 (372)
311 PRK08356 hypothetical protein; 89.5 0.2 4.3E-06 44.8 1.8 19 185-203 8-26 (195)
312 cd01918 HprK_C HprK/P, the bif 89.5 0.19 4.1E-06 43.3 1.6 23 182-204 14-36 (149)
313 cd03269 ABC_putative_ATPase Th 89.5 0.19 4E-06 45.3 1.6 22 185-206 29-50 (210)
314 cd03292 ABC_FtsE_transporter F 89.5 0.18 4E-06 45.4 1.6 23 184-206 29-51 (214)
315 PRK09862 putative ATP-dependen 89.5 0.35 7.7E-06 49.8 3.8 136 180-336 208-387 (506)
316 cd03226 ABC_cobalt_CbiO_domain 89.5 0.18 3.9E-06 45.2 1.5 22 185-206 29-50 (205)
317 PRK10751 molybdopterin-guanine 89.5 0.23 5E-06 43.8 2.1 23 185-207 9-31 (173)
318 cd03238 ABC_UvrA The excision 89.5 0.18 3.9E-06 44.6 1.5 19 185-203 24-42 (176)
319 PRK06620 hypothetical protein; 89.5 0.19 4.1E-06 45.9 1.7 22 183-204 45-66 (214)
320 PRK01184 hypothetical protein; 89.4 0.2 4.4E-06 44.0 1.8 23 268-290 80-102 (184)
321 cd03222 ABC_RNaseL_inhibitor T 89.4 0.18 3.8E-06 44.7 1.4 23 184-206 27-49 (177)
322 PRK10416 signal recognition pa 89.4 0.24 5.1E-06 48.1 2.4 25 183-207 115-139 (318)
323 PF13521 AAA_28: AAA domain; P 89.4 0.18 3.9E-06 43.5 1.4 21 185-205 2-22 (163)
324 TIGR00017 cmk cytidylate kinas 89.4 0.22 4.7E-06 45.6 2.0 23 185-207 5-27 (217)
325 PF09439 SRPRB: Signal recogni 89.4 0.2 4.3E-06 44.6 1.7 23 182-204 3-25 (181)
326 KOG0744|consensus 89.4 0.2 4.2E-06 48.4 1.7 27 181-207 176-202 (423)
327 TIGR03420 DnaA_homol_Hda DnaA 89.4 0.25 5.4E-06 44.8 2.4 25 182-206 38-62 (226)
328 KOG1534|consensus 89.4 0.27 5.9E-06 44.6 2.5 41 183-232 4-44 (273)
329 PHA00729 NTP-binding motif con 89.3 0.23 5E-06 45.7 2.1 24 184-207 19-42 (226)
330 TIGR03499 FlhF flagellar biosy 89.3 0.25 5.5E-06 47.0 2.5 26 183-208 195-220 (282)
331 COG4136 ABC-type uncharacteriz 89.3 0.21 4.6E-06 43.1 1.7 22 185-206 31-52 (213)
332 TIGR00960 3a0501s02 Type II (G 89.3 0.19 4.1E-06 45.5 1.5 22 185-206 32-53 (216)
333 TIGR01166 cbiO cobalt transpor 89.3 0.19 4.2E-06 44.5 1.5 22 185-206 21-42 (190)
334 PRK08939 primosomal protein Dn 89.3 0.21 4.5E-06 48.2 1.9 84 182-290 156-245 (306)
335 TIGR00554 panK_bact pantothena 89.3 0.24 5.2E-06 47.4 2.2 24 185-208 65-88 (290)
336 TIGR02315 ABC_phnC phosphonate 89.3 0.19 4.2E-06 46.3 1.6 23 184-206 30-52 (243)
337 cd02024 NRK1 Nicotinamide ribo 89.2 0.21 4.5E-06 44.7 1.7 22 185-206 2-23 (187)
338 cd02036 MinD Bacterial cell di 89.2 0.67 1.4E-05 40.1 4.9 43 188-239 6-48 (179)
339 cd03225 ABC_cobalt_CbiO_domain 89.2 0.2 4.3E-06 45.1 1.6 22 185-206 30-51 (211)
340 COG0283 Cmk Cytidylate kinase 89.2 0.2 4.4E-06 45.5 1.6 23 185-207 7-29 (222)
341 PLN03210 Resistant to P. syrin 89.2 1.5 3.3E-05 49.9 9.0 23 184-206 209-231 (1153)
342 cd03261 ABC_Org_Solvent_Resist 89.1 0.2 4.3E-06 46.0 1.6 22 185-206 29-50 (235)
343 TIGR02533 type_II_gspE general 89.1 0.22 4.8E-06 51.1 2.1 32 175-206 234-266 (486)
344 PRK12723 flagellar biosynthesi 89.1 0.42 9.1E-06 47.7 3.9 43 183-230 175-217 (388)
345 cd03258 ABC_MetN_methionine_tr 89.1 0.2 4.4E-06 45.8 1.6 24 183-206 32-55 (233)
346 cd03224 ABC_TM1139_LivF_branch 89.1 0.2 4.3E-06 45.5 1.5 22 185-206 29-50 (222)
347 TIGR02673 FtsE cell division A 89.1 0.2 4.4E-06 45.1 1.6 22 185-206 31-52 (214)
348 TIGR03608 L_ocin_972_ABC putat 89.1 0.21 4.5E-06 44.8 1.6 23 184-206 26-48 (206)
349 PF00625 Guanylate_kin: Guanyl 89.1 0.23 5E-06 43.8 1.9 24 183-206 3-26 (183)
350 COG1120 FepC ABC-type cobalami 89.1 0.16 3.4E-06 47.7 0.8 23 185-207 31-53 (258)
351 TIGR02538 type_IV_pilB type IV 89.1 0.3 6.4E-06 51.2 3.0 32 175-206 308-340 (564)
352 PRK06761 hypothetical protein; 89.0 0.22 4.7E-06 47.5 1.7 23 185-207 6-28 (282)
353 PF13604 AAA_30: AAA domain; P 89.0 0.38 8.3E-06 43.1 3.3 34 175-208 10-44 (196)
354 cd03259 ABC_Carb_Solutes_like 89.0 0.21 4.6E-06 45.1 1.6 22 185-206 29-50 (213)
355 KOG2035|consensus 89.0 1.8 4E-05 41.1 7.7 136 185-337 37-186 (351)
356 PRK13531 regulatory ATPase Rav 88.9 0.4 8.7E-06 49.0 3.7 33 175-207 32-64 (498)
357 PF00931 NB-ARC: NB-ARC domain 88.9 0.53 1.1E-05 44.2 4.3 25 181-205 18-42 (287)
358 PRK15429 formate hydrogenlyase 88.9 0.32 6.9E-06 52.2 3.1 119 175-316 392-519 (686)
359 cd03262 ABC_HisP_GlnQ_permease 88.9 0.22 4.7E-06 44.9 1.6 22 185-206 29-50 (213)
360 cd03256 ABC_PhnC_transporter A 88.8 0.22 4.7E-06 45.8 1.6 22 185-206 30-51 (241)
361 PF02367 UPF0079: Uncharacteri 88.8 0.26 5.6E-06 41.0 1.9 35 175-209 8-42 (123)
362 TIGR02211 LolD_lipo_ex lipopro 88.8 0.22 4.8E-06 45.1 1.6 22 185-206 34-55 (221)
363 TIGR01241 FtsH_fam ATP-depende 88.8 0.23 5E-06 51.1 1.9 25 181-205 87-111 (495)
364 cd03229 ABC_Class3 This class 88.7 0.23 4.9E-06 43.7 1.6 24 183-206 27-50 (178)
365 cd03293 ABC_NrtD_SsuB_transpor 88.7 0.22 4.8E-06 45.2 1.6 22 185-206 33-54 (220)
366 PRK09183 transposase/IS protei 88.7 0.26 5.7E-06 46.3 2.1 27 180-206 100-126 (259)
367 cd03265 ABC_DrrA DrrA is the A 88.7 0.23 4.9E-06 45.1 1.6 22 185-206 29-50 (220)
368 TIGR03015 pepcterm_ATPase puta 88.7 0.23 4.9E-06 46.3 1.6 23 184-206 45-67 (269)
369 cd03301 ABC_MalK_N The N-termi 88.7 0.23 4.9E-06 44.8 1.6 23 184-206 28-50 (213)
370 PLN02674 adenylate kinase 88.6 0.22 4.8E-06 46.4 1.5 23 184-206 33-55 (244)
371 cd03283 ABC_MutS-like MutS-lik 88.6 0.29 6.3E-06 44.1 2.2 24 183-206 26-49 (199)
372 cd03263 ABC_subfamily_A The AB 88.5 0.23 5.1E-06 44.9 1.6 22 185-206 31-52 (220)
373 TIGR00064 ftsY signal recognit 88.5 0.48 1E-05 44.9 3.7 25 183-207 73-97 (272)
374 cd04159 Arl10_like Arl10-like 88.5 0.23 4.9E-06 41.4 1.4 20 185-204 2-21 (159)
375 cd03257 ABC_NikE_OppD_transpor 88.5 0.23 5E-06 45.2 1.5 22 185-206 34-55 (228)
376 PRK04132 replication factor C 88.5 1.3 2.8E-05 48.5 7.3 112 190-338 574-690 (846)
377 cd03235 ABC_Metallic_Cations A 88.5 0.22 4.7E-06 45.0 1.3 22 185-206 28-49 (213)
378 TIGR01978 sufC FeS assembly AT 88.4 0.23 5.1E-06 45.6 1.6 21 185-205 29-49 (243)
379 PRK03846 adenylylsulfate kinas 88.4 0.29 6.3E-06 43.8 2.1 24 184-207 26-49 (198)
380 PF01583 APS_kinase: Adenylyls 88.4 0.36 7.7E-06 41.9 2.6 25 185-209 5-29 (156)
381 PRK12377 putative replication 88.4 0.37 8E-06 45.1 2.8 26 182-207 101-126 (248)
382 cd03219 ABC_Mj1267_LivG_branch 88.3 0.23 4.9E-06 45.6 1.4 22 185-206 29-50 (236)
383 cd03260 ABC_PstB_phosphate_tra 88.3 0.25 5.4E-06 45.0 1.6 22 185-206 29-50 (227)
384 COG3638 ABC-type phosphate/pho 88.2 0.25 5.5E-06 45.6 1.6 21 185-205 33-53 (258)
385 PRK11629 lolD lipoprotein tran 88.2 0.25 5.5E-06 45.3 1.6 22 185-206 38-59 (233)
386 cd03266 ABC_NatA_sodium_export 88.2 0.25 5.5E-06 44.7 1.6 22 185-206 34-55 (218)
387 PRK13768 GTPase; Provisional 88.2 0.51 1.1E-05 44.2 3.7 39 184-231 4-42 (253)
388 cd03273 ABC_SMC2_euk Eukaryoti 88.2 0.3 6.6E-06 45.4 2.1 24 184-207 27-50 (251)
389 cd03232 ABC_PDR_domain2 The pl 88.1 0.26 5.7E-06 43.8 1.6 21 184-204 35-55 (192)
390 KOG3354|consensus 88.1 0.33 7.1E-06 42.1 2.0 24 184-207 14-37 (191)
391 cd03230 ABC_DR_subfamily_A Thi 88.1 0.27 5.7E-06 43.0 1.6 23 184-206 28-50 (173)
392 cd03218 ABC_YhbG The ABC trans 88.0 0.26 5.7E-06 45.0 1.6 22 185-206 29-50 (232)
393 PRK08903 DnaA regulatory inact 88.0 0.31 6.8E-06 44.4 2.1 25 182-206 42-66 (227)
394 PRK13948 shikimate kinase; Pro 88.0 0.29 6.3E-06 43.5 1.8 25 183-207 11-35 (182)
395 TIGR03819 heli_sec_ATPase heli 88.0 0.35 7.7E-06 47.3 2.6 37 170-206 166-202 (340)
396 cd03216 ABC_Carb_Monos_I This 88.0 0.27 5.9E-06 42.6 1.6 23 184-206 28-50 (163)
397 COG1763 MobB Molybdopterin-gua 88.0 1.9 4.2E-05 37.6 6.8 92 186-301 6-101 (161)
398 TIGR00176 mobB molybdopterin-g 88.0 0.37 8.1E-06 41.6 2.4 23 185-207 2-24 (155)
399 PRK13541 cytochrome c biogenes 88.0 0.27 5.9E-06 43.8 1.6 22 185-206 29-50 (195)
400 COG1118 CysA ABC-type sulfate/ 88.0 0.27 5.8E-06 47.2 1.6 24 183-206 29-52 (345)
401 cd04155 Arl3 Arl3 subfamily. 87.9 0.27 5.9E-06 42.2 1.6 22 183-204 15-36 (173)
402 TIGR03410 urea_trans_UrtE urea 87.9 0.26 5.6E-06 45.0 1.5 23 184-206 28-50 (230)
403 TIGR02974 phageshock_pspF psp 87.9 0.15 3.3E-06 49.7 -0.1 158 172-352 12-190 (329)
404 cd03268 ABC_BcrA_bacitracin_re 87.9 0.27 5.9E-06 44.1 1.6 23 184-206 28-50 (208)
405 PRK11124 artP arginine transpo 87.9 0.27 5.9E-06 45.3 1.6 23 184-206 30-52 (242)
406 cd03116 MobB Molybdenum is an 87.8 0.36 7.8E-06 42.0 2.2 25 184-208 3-27 (159)
407 COG1474 CDC6 Cdc6-related prot 87.8 0.77 1.7E-05 45.4 4.8 26 185-210 45-70 (366)
408 cd03297 ABC_ModC_molybdenum_tr 87.8 0.28 6E-06 44.4 1.6 24 183-206 24-47 (214)
409 PRK14974 cell division protein 87.8 0.36 7.9E-06 47.2 2.5 26 183-208 141-166 (336)
410 COG0572 Udk Uridine kinase [Nu 87.8 0.29 6.3E-06 44.7 1.7 22 186-207 12-33 (218)
411 COG0529 CysC Adenylylsulfate k 87.7 0.35 7.7E-06 42.8 2.1 27 184-210 25-51 (197)
412 cd03296 ABC_CysA_sulfate_impor 87.7 0.28 6.1E-06 45.2 1.6 23 184-206 30-52 (239)
413 TIGR01447 recD exodeoxyribonuc 87.7 4.9 0.00011 42.4 10.9 28 182-209 160-187 (586)
414 cd03254 ABCC_Glucan_exporter_l 87.7 0.28 6.1E-06 44.7 1.6 22 185-206 32-53 (229)
415 TIGR03864 PQQ_ABC_ATP ABC tran 87.6 0.29 6.3E-06 45.0 1.6 23 184-206 29-51 (236)
416 PRK14242 phosphate transporter 87.6 0.29 6.3E-06 45.5 1.6 22 185-206 35-56 (253)
417 PRK14722 flhF flagellar biosyn 87.6 0.35 7.5E-06 48.0 2.2 26 181-206 136-161 (374)
418 TIGR00174 miaA tRNA isopenteny 87.6 0.31 6.7E-06 46.6 1.8 22 185-206 2-23 (287)
419 cd03237 ABC_RNaseL_inhibitor_d 87.6 0.29 6.3E-06 45.6 1.6 22 185-206 28-49 (246)
420 PRK13540 cytochrome c biogenes 87.6 0.3 6.4E-06 43.7 1.6 23 183-205 28-50 (200)
421 cd03247 ABCC_cytochrome_bd The 87.6 0.3 6.4E-06 42.9 1.6 22 185-206 31-52 (178)
422 PRK10584 putative ABC transpor 87.5 0.3 6.4E-06 44.6 1.6 24 183-206 37-60 (228)
423 PRK10247 putative ABC transpor 87.5 0.3 6.4E-06 44.6 1.6 22 185-206 36-57 (225)
424 KOG0738|consensus 87.5 0.29 6.4E-06 48.3 1.6 22 182-203 245-266 (491)
425 cd03246 ABCC_Protease_Secretio 87.5 0.31 6.6E-06 42.6 1.6 22 185-206 31-52 (173)
426 PRK05201 hslU ATP-dependent pr 87.5 0.33 7.1E-06 48.8 2.0 24 183-206 51-74 (443)
427 PRK11248 tauB taurine transpor 87.5 0.29 6.3E-06 45.7 1.6 22 185-206 30-51 (255)
428 PF13476 AAA_23: AAA domain; P 87.5 0.39 8.5E-06 42.1 2.3 24 185-208 22-45 (202)
429 PRK10908 cell division protein 87.5 0.3 6.4E-06 44.4 1.6 23 184-206 30-52 (222)
430 PRK06995 flhF flagellar biosyn 87.5 0.34 7.4E-06 49.6 2.2 24 184-207 258-281 (484)
431 cd03215 ABC_Carb_Monos_II This 87.4 0.3 6.5E-06 43.0 1.5 23 184-206 28-50 (182)
432 PF06414 Zeta_toxin: Zeta toxi 87.4 0.33 7.2E-06 43.5 1.8 81 184-285 17-111 (199)
433 PRK11608 pspF phage shock prot 87.3 0.33 7.1E-06 47.2 1.8 155 172-352 19-197 (326)
434 TIGR01969 minD_arch cell divis 87.3 1.1 2.4E-05 41.1 5.3 43 188-239 7-49 (251)
435 cd00046 DEXDc DEAD-like helica 87.2 0.42 9.1E-06 38.5 2.2 24 184-207 2-25 (144)
436 TIGR01184 ntrCD nitrate transp 87.2 0.32 6.8E-06 44.6 1.6 22 185-206 14-35 (230)
437 smart00072 GuKc Guanylate kina 87.2 0.34 7.4E-06 42.8 1.8 22 184-205 4-25 (184)
438 cd03295 ABC_OpuCA_Osmoprotecti 87.2 0.32 6.9E-06 44.9 1.6 23 184-206 29-51 (242)
439 PRK14250 phosphate ABC transpo 87.2 0.31 6.8E-06 45.0 1.6 22 185-206 32-53 (241)
440 cd03228 ABCC_MRP_Like The MRP 87.1 0.33 7.1E-06 42.3 1.6 24 183-206 29-52 (171)
441 TIGR02323 CP_lyasePhnK phospho 87.1 0.32 6.8E-06 45.2 1.6 23 184-206 31-53 (253)
442 PRK14240 phosphate transporter 87.1 0.32 6.9E-06 45.1 1.6 22 185-206 32-53 (250)
443 COG2255 RuvB Holliday junction 87.1 0.35 7.7E-06 45.9 1.8 114 185-333 55-176 (332)
444 COG1122 CbiO ABC-type cobalt t 87.1 0.3 6.6E-06 45.3 1.4 24 184-207 32-55 (235)
445 cd03234 ABCG_White The White s 87.1 0.33 7.1E-06 44.3 1.6 23 184-206 35-57 (226)
446 PRK13538 cytochrome c biogenes 87.1 0.32 7E-06 43.6 1.6 22 185-206 30-51 (204)
447 PRK14247 phosphate ABC transpo 87.0 0.32 7E-06 45.1 1.6 22 185-206 32-53 (250)
448 PRK13539 cytochrome c biogenes 87.0 0.33 7.2E-06 43.7 1.6 22 185-206 31-52 (207)
449 TIGR01189 ccmA heme ABC export 87.0 0.33 7.2E-06 43.3 1.6 23 184-206 28-50 (198)
450 cd03298 ABC_ThiQ_thiamine_tran 87.0 0.33 7.1E-06 43.7 1.6 22 185-206 27-48 (211)
451 PRK11247 ssuB aliphatic sulfon 87.0 0.33 7.1E-06 45.5 1.6 23 184-206 40-62 (257)
452 cd03221 ABCF_EF-3 ABCF_EF-3 E 86.9 0.32 6.9E-06 41.3 1.4 23 183-205 27-49 (144)
453 cd03223 ABCD_peroxisomal_ALDP 86.9 0.34 7.3E-06 42.1 1.6 23 184-206 29-51 (166)
454 TIGR03265 PhnT2 putative 2-ami 86.9 0.32 7E-06 47.8 1.6 23 184-206 32-54 (353)
455 PRK13543 cytochrome c biogenes 86.9 0.33 7.1E-06 44.0 1.5 24 183-206 38-61 (214)
456 KOG0731|consensus 86.9 0.32 7E-06 52.0 1.6 23 181-203 343-365 (774)
457 cd03214 ABC_Iron-Siderophores_ 86.9 0.34 7.4E-06 42.6 1.6 22 184-205 27-48 (180)
458 PLN02459 probable adenylate ki 86.9 0.35 7.6E-06 45.5 1.7 22 185-206 32-53 (261)
459 cd03245 ABCC_bacteriocin_expor 86.9 0.34 7.3E-06 43.9 1.6 22 185-206 33-54 (220)
460 PRK11264 putative amino-acid A 86.9 0.34 7.3E-06 44.9 1.6 22 185-206 32-53 (250)
461 PRK14241 phosphate transporter 86.9 0.33 7.3E-06 45.2 1.6 22 185-206 33-54 (258)
462 PF01656 CbiA: CobQ/CobB/MinD/ 86.9 1 2.2E-05 39.5 4.6 43 188-239 5-47 (195)
463 PRK09087 hypothetical protein; 86.8 0.38 8.1E-06 44.3 1.9 21 184-204 46-66 (226)
464 PRK11432 fbpC ferric transport 86.8 0.33 7.2E-06 47.7 1.6 23 184-206 34-56 (351)
465 cd01673 dNK Deoxyribonucleosid 86.8 0.41 8.8E-06 42.4 2.0 22 185-206 2-23 (193)
466 cd03114 ArgK-like The function 86.8 0.88 1.9E-05 38.9 4.0 24 185-208 2-25 (148)
467 cd01385 MYSc_type_IX Myosin mo 86.8 0.85 1.8E-05 49.0 4.7 56 155-210 57-122 (692)
468 cd03278 ABC_SMC_barmotin Barmo 86.7 0.42 9.2E-06 42.9 2.1 58 266-338 134-194 (197)
469 PRK10895 lipopolysaccharide AB 86.7 0.35 7.5E-06 44.6 1.6 22 185-206 32-53 (241)
470 PRK11650 ugpC glycerol-3-phosp 86.7 0.34 7.3E-06 47.8 1.6 22 185-206 33-54 (356)
471 COG1618 Predicted nucleotide k 86.7 0.49 1.1E-05 41.3 2.3 27 183-209 6-32 (179)
472 TIGR00750 lao LAO/AO transport 86.7 0.77 1.7E-05 44.0 4.0 28 181-208 33-60 (300)
473 TIGR01448 recD_rel helicase, p 86.7 0.69 1.5E-05 49.9 4.1 26 184-209 340-365 (720)
474 smart00175 RAB Rab subfamily o 86.7 0.36 7.9E-06 40.8 1.6 19 185-203 3-21 (164)
475 cd03251 ABCC_MsbA MsbA is an e 86.6 0.35 7.6E-06 44.2 1.6 52 266-332 155-209 (234)
476 cd03290 ABCC_SUR1_N The SUR do 86.6 0.35 7.7E-06 43.8 1.6 22 185-206 30-51 (218)
477 PF01695 IstB_IS21: IstB-like 86.6 0.37 8.1E-06 42.6 1.7 87 180-290 45-135 (178)
478 cd03233 ABC_PDR_domain1 The pl 86.6 0.32 6.9E-06 43.7 1.2 23 184-206 35-57 (202)
479 PRK14267 phosphate ABC transpo 86.6 0.35 7.6E-06 44.9 1.6 22 185-206 33-54 (253)
480 PRK10771 thiQ thiamine transpo 86.6 0.35 7.5E-06 44.3 1.5 23 184-206 27-49 (232)
481 PRK10744 pstB phosphate transp 86.6 0.35 7.7E-06 45.2 1.6 22 185-206 42-63 (260)
482 TIGR02858 spore_III_AA stage I 86.6 0.36 7.8E-06 45.7 1.6 33 175-207 102-136 (270)
483 PRK14274 phosphate ABC transpo 86.5 0.38 8.3E-06 44.9 1.8 22 185-206 41-62 (259)
484 PLN02748 tRNA dimethylallyltra 86.5 0.6 1.3E-05 47.6 3.3 71 185-261 25-104 (468)
485 TIGR02324 CP_lyasePhnL phospho 86.5 0.36 7.8E-06 43.9 1.6 22 185-206 37-58 (224)
486 smart00173 RAS Ras subfamily o 86.4 0.4 8.7E-06 40.7 1.7 19 185-203 3-21 (164)
487 TIGR02770 nickel_nikD nickel i 86.4 0.36 7.8E-06 44.2 1.5 23 185-207 15-37 (230)
488 cd03252 ABCC_Hemolysin The ABC 86.4 0.36 7.9E-06 44.3 1.5 22 185-206 31-52 (237)
489 PRK14273 phosphate ABC transpo 86.4 0.37 8E-06 44.8 1.6 23 184-206 35-57 (254)
490 COG3950 Predicted ATP-binding 86.3 0.36 7.9E-06 46.9 1.5 33 179-211 21-53 (440)
491 cd03294 ABC_Pro_Gly_Bertaine T 86.3 0.37 8E-06 45.4 1.6 24 183-206 51-74 (269)
492 PRK13648 cbiO cobalt transport 86.3 0.37 8E-06 45.3 1.6 23 184-206 37-59 (269)
493 TIGR03005 ectoine_ehuA ectoine 86.3 0.37 8E-06 44.7 1.5 23 184-206 28-50 (252)
494 PLN02165 adenylate isopentenyl 86.3 0.33 7.2E-06 47.3 1.2 23 185-207 46-68 (334)
495 PRK09452 potA putrescine/sperm 86.3 0.36 7.9E-06 47.9 1.6 22 185-206 43-64 (375)
496 PRK13645 cbiO cobalt transport 86.2 0.37 8E-06 45.9 1.5 22 185-206 40-61 (289)
497 PRK14262 phosphate ABC transpo 86.2 0.38 8.2E-06 44.6 1.6 22 185-206 32-53 (250)
498 PRK13632 cbiO cobalt transport 86.2 0.37 8.1E-06 45.4 1.6 22 185-206 38-59 (271)
499 TIGR00455 apsK adenylylsulfate 86.2 0.48 1E-05 41.7 2.2 24 184-207 20-43 (184)
500 TIGR00972 3a0107s01c2 phosphat 86.2 0.38 8.2E-06 44.5 1.6 22 185-206 30-51 (247)
No 1
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=2.2e-33 Score=279.97 Aligned_cols=137 Identities=53% Similarity=0.914 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHhhhhhhhcccCchhhhhhChHHHhhHHHhHHHHHHHHHHhhcCCcchhhhhhhHHHHHHHHHHHHHHH
Q psy4734 1 MQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLEL 80 (367)
Q Consensus 1 ~~~~l~~w~~~Q~~W~~L~~if~~~di~~~lp~e~~~f~~i~~~~~~i~~~~~~~~~~l~~~~~~~~l~~l~~~~~~Le~ 80 (367)
++++|+.|..||++|+||++||+++||+++||.|+++|+.|++.|+.+|..+.++|+++.+|..+++.+.|+.++..|+.
T Consensus 216 ~~~il~~w~~~Q~~W~yL~~if~~~di~~~lp~e~~~F~~i~~~~~~i~~~~~~~~~v~~~~~~~~~~~~l~~~~~~l~~ 295 (408)
T PF08393_consen 216 IQEILEEWMEVQRKWMYLEPIFSSSDIKKQLPKEAKKFSSIDKEWRSIMKRAQKDPNVLSVCSNPDLLEKLESINESLEK 295 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCHCCCTHHHHHHHHHHHHHHHHHHHHHHCT-CCHHHCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcChHHHHHHHHHHhCcchhHHhhHhhHHHHHHHHHHHHHH
Confidence 46899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCcccccCHHHHHHHhhcCCCccchhhhHHHHHHHhHhhhhh
Q psy4734 81 IQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEASMALISG 137 (367)
Q Consensus 81 i~k~L~~yLe~KR~~FPRfyFLsdedLl~il~~~~~~~~i~~~l~k~f~~i~~l~~~ 137 (367)
|+++|.+|||+||..|||||||||+||+++||.++||..+++|++|||+||..+.++
T Consensus 296 i~k~L~~~Le~kR~~FPRfyFlsd~eLl~ils~~~~~~~i~~~l~k~F~~i~~l~~~ 352 (408)
T PF08393_consen 296 IQKSLNDYLESKREAFPRFYFLSDDELLEILSQSKDPEQIQPHLKKCFPGIKSLEFD 352 (408)
T ss_dssp HHHHHHHHHHHHHHHSCCHHHC-HHHHHHHHHTTTTCHHHHHHHHHCCSSEEEEEE-
T ss_pred HHHHHhHHHHHHHhhccceeecCcHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999998754
No 2
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.27 E-value=5.8e-12 Score=106.78 Aligned_cols=125 Identities=25% Similarity=0.299 Sum_probs=94.7
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecc--cccccccchHHHHHHHHh
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDS--ASHEWRDGILAKTFREMA 261 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~--~~~~W~dGil~~~~r~~~ 261 (367)
.|+++||+|+|||++++.+++.++ .++... --+...+..+|+|.+++ ...+|.+|.+..++++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~------------~~~~~i-~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~- 66 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG------------RPVIRI-NCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKG- 66 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT------------CEEEEE-E-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEE-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh------------cceEEE-Eeccccccccceeeeeecccccccccccccccccce-
Confidence 378999999999999999998872 122222 22334678899999986 45679999999999844
Q ss_pred cCCCCCceEEEEcCC--CChHhhhhhhhccCCCCceeecccceeecCCC------CeEEEecCCCC----ccCcchhhce
Q psy4734 262 VSTTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNT------MNLIFECENLE----FASPATVSRV 329 (367)
Q Consensus 262 ~~~~~~~~wivfDG~--~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~------~~~ifE~~~l~----~asPatvsRc 329 (367)
.|+|+|.- .++...+.|++++++.+......++.++.++. +++|.-...-. ..+||+.+||
T Consensus 67 -------~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 67 -------GILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -------EEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred -------eEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 89999964 36899999999999988887777788887774 88888887777 8999999996
No 3
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.09 E-value=1.3e-09 Score=117.98 Aligned_cols=116 Identities=10% Similarity=0.028 Sum_probs=101.5
Q ss_pred hhhhhhhcccC-chhhhhhChHHHhhHHHhHHHHHHHHHHhhcCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4734 13 GTWMYLEPIFS-SEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQKGLNDYLEK 91 (367)
Q Consensus 13 ~~W~~L~~if~-~~di~~~lp~e~~~f~~i~~~~~~i~~~~~~~~~~l~~~~~~~~l~~l~~~~~~Le~i~k~L~~yLe~ 91 (367)
-.|+.+..+.. ..|++..+|.+..+|..+...++.|.+++..-...+.....|.. +.|.-..+.+..|..++..+|+.
T Consensus 625 ~~~ld~y~~~~~~~dl~~~ip~~~~~~~sl~s~~~~i~~r~~~~~~~i~~i~~~~~-d~l~l~~~~~~~v~~si~~~l~~ 703 (3164)
T COG5245 625 LRRLDEYLMMMSLEDLMPLIPHAVHRKMSLVSGVRGIYKRVVSGCEAINTILEDVG-DDLDLFYKEMDQVFMSIEKVLGL 703 (3164)
T ss_pred HHHHHHHHHHhhhhhhcccccHHHHHHHHHHhhhhhhhhhhhcccchhheeeccCC-chHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999996 59999999999999999999999999999776666666655544 33677788899999999999999
Q ss_pred HhhhcCcccccCHHHHHHHhhcCCCccchhhhHHHHHHHh
Q psy4734 92 KRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEAS 131 (367)
Q Consensus 92 KR~~FPRfyFLsdedLl~il~~~~~~~~i~~~l~k~f~~i 131 (367)
+|..||| |+++|||+++++..++-....+++.|.|..+
T Consensus 704 ~~r~~~r--~~~~~~l~~~v~~~~~~~~~~~f~~k~~~~~ 741 (3164)
T COG5245 704 RWREVER--ASEVEELMDRVRELENRVYSYRFFVKKIAKE 741 (3164)
T ss_pred HHHhhhh--hcchHHHHHHHhcccchHHHHHHHHHHHhhH
Confidence 9999999 9999999999999999999999999987654
No 4
>PHA02244 ATPase-like protein
Probab=98.92 E-value=4.8e-09 Score=102.10 Aligned_cols=137 Identities=16% Similarity=0.236 Sum_probs=102.4
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHH
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILA 254 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~ 254 (367)
+.+.+.....+++.||+|+|||++.+.++..++ +.++.+|. -.+..++.|..+. .+.|.||.+.
T Consensus 112 i~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg--------------~pfv~In~-l~d~~~L~G~i~~-~g~~~dgpLl 175 (383)
T PHA02244 112 IAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD--------------LDFYFMNA-IMDEFELKGFIDA-NGKFHETPFY 175 (383)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEec-ChHHHhhcccccc-cccccchHHH
Confidence 445667788899999999999999999887642 12334441 1234456776543 4589999999
Q ss_pred HHHHHHhcCCCCCceEEEEcC--CCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCC-----------Ccc
Q psy4734 255 KTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL-----------EFA 321 (367)
Q Consensus 255 ~~~r~~~~~~~~~~~wivfDG--~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l-----------~~a 321 (367)
++++++ .|+++|. ...+.-...|++++++. .+.+. |+++..++++++|+=.... ...
T Consensus 176 ~A~~~G--------gvLiLDEId~a~p~vq~~L~~lLd~r-~l~l~-g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L 245 (383)
T PHA02244 176 EAFKKG--------GLFFIDEIDASIPEALIIINSAIANK-FFDFA-DERVTAHEDFRVISAGNTLGKGADHIYVARNKI 245 (383)
T ss_pred HHhhcC--------CEEEEeCcCcCCHHHHHHHHHHhccC-eEEec-CcEEecCCCEEEEEeeCCCccCcccccCCCccc
Confidence 998766 7999993 34577788999999874 56665 7789999999998865542 567
Q ss_pred CcchhhceeeEEeccc
Q psy4734 322 SPATVSRVGMIYFELK 337 (367)
Q Consensus 322 sPatvsRcg~v~~~~~ 337 (367)
.+|+++|+..|+++-.
T Consensus 246 ~~AllDRFv~I~~dyp 261 (383)
T PHA02244 246 DGATLDRFAPIEFDYD 261 (383)
T ss_pred CHHHHhhcEEeeCCCC
Confidence 8999999999998753
No 5
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.82 E-value=2e-08 Score=94.64 Aligned_cols=141 Identities=17% Similarity=0.177 Sum_probs=98.4
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecc-----------
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDS----------- 243 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~----------- 243 (367)
+..++.....+++.||+|+|||++.+.+++.++ .++.....++ ..+..+++|.+..
T Consensus 14 ~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg------------~~~~~i~~~~-~~~~~dllg~~~~~~~~~~~~~~~ 80 (262)
T TIGR02640 14 ALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRD------------RPVMLINGDA-ELTTSDLVGSYAGYTRKKVHDQFI 80 (262)
T ss_pred HHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhC------------CCEEEEeCCc-cCCHHHHhhhhcccchhhHHHHHH
Confidence 344556667799999999999999999886442 1232222333 3444566665421
Q ss_pred ---------cccccccchHHHHHHHHhcCCCCCceEEEEcCC--CChHhhhhhhhccCCCCceeecc----cceeecCCC
Q psy4734 244 ---------ASHEWRDGILAKTFREMAVSTTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLIN----GEIIKMSNT 308 (367)
Q Consensus 244 ---------~~~~W~dGil~~~~r~~~~~~~~~~~wivfDG~--~d~~wie~lnsvlddn~~l~L~~----ge~i~l~~~ 308 (367)
...+|.+|.+..++++. .|+++|.- .++.....|+++|++ +.+++++ ++.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~g~l~~A~~~g--------~~lllDEi~r~~~~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~~~~~ 151 (262)
T TIGR02640 81 HNVVKLEDIVRQNWVDNRLTLAVREG--------FTLVYDEFTRSKPETNNVLLSVFEE-GVLELPGKRGTSRYVDVHPE 151 (262)
T ss_pred HHhhhhhcccceeecCchHHHHHHcC--------CEEEEcchhhCCHHHHHHHHHHhcC-CeEEccCCCCCCceEecCCC
Confidence 12369999998888643 69999943 567788888999986 6777765 467889999
Q ss_pred CeEEEecCCCC------ccCcchhhceeeEEecccC
Q psy4734 309 MNLIFECENLE------FASPATVSRVGMIYFELKC 338 (367)
Q Consensus 309 ~~~ifE~~~l~------~asPatvsRcg~v~~~~~~ 338 (367)
+++|+ |+|-. ..++|...||..++++--+
T Consensus 152 frvIa-TsN~~~~~g~~~l~~aL~~R~~~i~i~~P~ 186 (262)
T TIGR02640 152 FRVIF-TSNPVEYAGVHETQDALLDRLITIFMDYPD 186 (262)
T ss_pred CEEEE-eeCCccccceecccHHHHhhcEEEECCCCC
Confidence 98877 44422 3477999999999987543
No 6
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.78 E-value=1.3e-09 Score=117.89 Aligned_cols=145 Identities=28% Similarity=0.535 Sum_probs=115.0
Q ss_pred hHHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchH
Q psy4734 174 HLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGIL 253 (367)
Q Consensus 174 ~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil 253 (367)
.+..++..+.++..+|-.|-||..+...-..+..-.+ -+||- ++-|++|.-+..+++|.|-+.
T Consensus 1821 ~l~HiLr~~R~l~~vggh~~l~g~~~~g~~~~~efvc---------------wlN~~--~m~e~~~hr~~~~~Df~d~lk 1883 (3164)
T COG5245 1821 ALLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVC---------------WLNPR--NMREIFGHRDELTGDFRDSLK 1883 (3164)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHHHH---------------HhCcc--chhhhhcccccchhhHHHHHH
Confidence 3555677777777777666666655443222211111 14554 567999999999999999999
Q ss_pred HHHHHHHhcCCCCCceEEEEcC-CCChHhhhhhhhccCCCCceeeccc-ceeecCCCCeEEEecCCCCccCcchhhceee
Q psy4734 254 AKTFREMAVSTTPDRKWIMFDG-PIDAVWIENMNTVLDDNKKLCLING-EIIKMSNTMNLIFECENLEFASPATVSRVGM 331 (367)
Q Consensus 254 ~~~~r~~~~~~~~~~~wivfDG-~~d~~wie~lnsvlddn~~l~L~~g-e~i~l~~~~~~ifE~~~l~~asPatvsRcg~ 331 (367)
...+|.. ..+....|+|+|| ++.+.|+|.||++||.|+.+||.+| |++++++|.|.+||...|..-||+|+.|.-|
T Consensus 1884 ~~~~~~~--~~~~r~Cl~I~Esi~~es~fLe~~N~LL~n~~~~~lf~gne~~~I~~nlr~~~es~~L~~dTe~tlt~vFl 1961 (3164)
T COG5245 1884 VQDLRRN--IHGGRECLFIFESIPVESSFLEDFNPLLDNNRFLCLFSGNERIRIPENLRFVFESTSLEKDTEATLTRVFL 1961 (3164)
T ss_pred HHHHhcc--ccCCceEEEEecCCccchHHHHHhhhhhhccccchhccchhHHHHHHHHHhhhhccccccCCHHHHHHHHH
Confidence 8888754 3456679999999 9999999999999999999999999 9999999999999999999999999999888
Q ss_pred EEeccc
Q psy4734 332 IYFELK 337 (367)
Q Consensus 332 v~~~~~ 337 (367)
+||..+
T Consensus 1962 ~~~~~N 1967 (3164)
T COG5245 1962 VYMEEN 1967 (3164)
T ss_pred HHHHhc
Confidence 877543
No 7
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.77 E-value=2.4e-08 Score=109.24 Aligned_cols=137 Identities=23% Similarity=0.332 Sum_probs=103.9
Q ss_pred HHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeC-CCCCcccccccee---cccccccccchH
Q psy4734 178 IFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIIN-PKSITMGQLYGEF---DSASHEWRDGIL 253 (367)
Q Consensus 178 ~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~in-pka~t~~~l~G~~---d~~~~~W~dGil 253 (367)
+...+-.+++.||+.||||+.+..|++.... ....|| ...-..+++.|.| |..+-++++|++
T Consensus 884 ~s~~~fP~LiQGpTSSGKTSMI~yla~~tgh--------------kfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvL 949 (4600)
T COG5271 884 ASLSNFPLLIQGPTSSGKTSMILYLARETGH--------------KFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVL 949 (4600)
T ss_pred HhhcCCcEEEecCCCCCcchHHHHHHHHhCc--------------cEEEecCcccchHHHHhhceeecCCCceeeehhHH
Confidence 3445566888899999999999988865421 123454 4555699999998 333347999999
Q ss_pred HHHHHHHhcCCCCCceEEEEcCC--CChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCC-------CCccCcc
Q psy4734 254 AKTFREMAVSTTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-------LEFASPA 324 (367)
Q Consensus 254 ~~~~r~~~~~~~~~~~wivfDG~--~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~-------l~~asPa 324 (367)
.-++|++ .|||+|-- ..+.-.|.||.+||||+.|..|..+.+..|..=..+|.|.+ =++.|-|
T Consensus 950 VeAlR~G--------yWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrA 1021 (4600)
T COG5271 950 VEALRRG--------YWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRA 1021 (4600)
T ss_pred HHHHhcC--------cEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHH
Confidence 9999998 99999932 34558899999999999999999977776766668999998 2346677
Q ss_pred hhhceeeEEecc
Q psy4734 325 TVSRVGMIYFEL 336 (367)
Q Consensus 325 tvsRcg~v~~~~ 336 (367)
.-.|.--+|++.
T Consensus 1022 FRNRFlE~hFdd 1033 (4600)
T COG5271 1022 FRNRFLEMHFDD 1033 (4600)
T ss_pred HHhhhHhhhccc
Confidence 777766666653
No 8
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.71 E-value=6.6e-09 Score=103.82 Aligned_cols=124 Identities=35% Similarity=0.495 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCcccccCH-----------------HHHHHHhhc-CCCcc--------
Q psy4734 66 DMLKNFNKCNLMLELIQKGLNDYLEKKRL-FFPRFFFLSN-----------------DELLEILSE-TKDPL-------- 118 (367)
Q Consensus 66 ~~l~~l~~~~~~Le~i~k~L~~yLe~KR~-~FPRfyFLsd-----------------edLl~il~~-~~~~~-------- 118 (367)
.+......+...|..++..|+.|.+.||. .+-.-.|-++ .+...++.. .++|.
T Consensus 201 ~~~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~if~~~di~~~lp~e~~~F~~i~~~~~~i~~~~~~~~~v~~~~~~~ 280 (408)
T PF08393_consen 201 PFRDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEPIFSSSDIKKQLPKEAKKFSSIDKEWRSIMKRAQKDPNVLSVCSNP 280 (408)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHCCCTHHHHHHHHHHHHHHHHHHHHHHCT-CCHHHCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcChHHHHHHHHHHhCcchhHHhhHh
Confidence 34556778888999999999999999998 2222233332 122333222 12222
Q ss_pred chhhhHHHHHHHhHhhhhhhhhhh--cccCCCceeecchHHHHHHHHhcCCcccchhhHHHHHhhhhhheecc
Q psy4734 119 RVQPHLKKIFEASMALISGLVATL--NLLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEVRHGLMVVG 189 (367)
Q Consensus 119 ~i~~~l~k~f~~i~~l~~~l~~~~--~~~~fprf~f~s~~~Ll~ils~~~~~~~lq~~l~k~~~~~~~v~~~g 189 (367)
.+...+..+......+..++.+.+ +|..||||||+||+||++++|.+++|..+++|+.|||.+.+.+.+..
T Consensus 281 ~~~~~l~~~~~~l~~i~k~L~~~Le~kR~~FPRfyFlsd~eLl~ils~~~~~~~i~~~l~k~F~~i~~l~~~~ 353 (408)
T PF08393_consen 281 DLLEKLESINESLEKIQKSLNDYLESKREAFPRFYFLSDDELLEILSQSKDPEQIQPHLKKCFPGIKSLEFDE 353 (408)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHC-HHHHHHHHHTTTTCHHHHHHHHHCCSSEEEEEE-T
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccceeecCcHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 234455556666666677777755 88899999999999999999999999999999999999999988854
No 9
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.65 E-value=1.5e-07 Score=90.61 Aligned_cols=134 Identities=21% Similarity=0.253 Sum_probs=94.3
Q ss_pred hhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCcccccccee--c--ccc--cccccchH
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEF--D--SAS--HEWRDGIL 253 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~--d--~~~--~~W~dGil 253 (367)
.....+++.|++|+|||++.+.+++.++. ++.....++. ++..++.|.. . ... .+|.||.+
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~------------~~~rV~~~~~-l~~~DliG~~~~~l~~g~~~~~f~~GpL 128 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNW------------PCVRVNLDSH-VSRIDLVGKDAIVLKDGKQITEFRDGIL 128 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCC------------CeEEEEecCC-CChhhcCCCceeeccCCcceeEEecCcc
Confidence 44567999999999999999999988752 1221222333 5667788863 2 111 47999999
Q ss_pred HHHHHHHhcCCCCCceEEEEcC--CCChHhhhhhhhccCCCCceeecc-cceeecCCCCeEEEecCCC-C----------
Q psy4734 254 AKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLIN-GEIIKMSNTMNLIFECENL-E---------- 319 (367)
Q Consensus 254 ~~~~r~~~~~~~~~~~wivfDG--~~d~~wie~lnsvlddn~~l~L~~-ge~i~l~~~~~~ifE~~~l-~---------- 319 (367)
+.+++.. .|+++|. ..++.-...||++||+.+.+++.. |+.|..+|.+++| -|.|- .
T Consensus 129 ~~A~~~g--------~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~Frvi-AT~Np~g~Gd~~G~y~G 199 (327)
T TIGR01650 129 PWALQHN--------VALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLF-ATANTIGLGDTTGLYHG 199 (327)
T ss_pred hhHHhCC--------eEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEE-EeeCCCCcCCCCcceee
Confidence 9999865 8999992 235556677888999988999864 6777777777655 45553 1
Q ss_pred --ccCcchhhceeeE-Eec
Q psy4734 320 --FASPATVSRVGMI-YFE 335 (367)
Q Consensus 320 --~asPatvsRcg~v-~~~ 335 (367)
...+|+..|..++ .++
T Consensus 200 t~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 200 TQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred eecCCHHHHhheeeEeeCC
Confidence 1357999999876 354
No 10
>KOG1808|consensus
Probab=98.39 E-value=2.7e-07 Score=104.18 Aligned_cols=134 Identities=22% Similarity=0.356 Sum_probs=103.8
Q ss_pred hhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccce-eccccc--ccccchHHHH
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGE-FDSASH--EWRDGILAKT 256 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~-~d~~~~--~W~dGil~~~ 256 (367)
..+-.+.|.||++||||.+++-|+++.+.-. ....|....+..++.|. +...++ .|++|++..+
T Consensus 438 ~~~~pillqG~tssGKtsii~~la~~~g~~~-------------vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~A 504 (1856)
T KOG1808|consen 438 SGKFPILLQGPTSSGKTSIIKELARATGKNI-------------VRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQA 504 (1856)
T ss_pred cCCCCeEEecCcCcCchhHHHHHHHHhccCc-------------eehhccccchHHHHHHhhhcCCCCCeeeehhHHHHH
Confidence 3445688999999999999999998874211 12345566689999994 433344 5999999999
Q ss_pred HHHHhcCCCCCceEEEEcC-C-CChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCC-------ccCcchhh
Q psy4734 257 FREMAVSTTPDRKWIMFDG-P-IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-------FASPATVS 327 (367)
Q Consensus 257 ~r~~~~~~~~~~~wivfDG-~-~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~-------~asPatvs 327 (367)
+|++ .|+|||| . ....-+|.||.++|||+.|.++.|.|..-+....++|-|.+-. ..|-|..+
T Consensus 505 lr~G--------~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~ 576 (1856)
T KOG1808|consen 505 LRNG--------DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRN 576 (1856)
T ss_pred HHhC--------CEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccc
Confidence 9999 9999998 3 4666899999999999999999999999888888999887754 24445555
Q ss_pred ceeeEEe
Q psy4734 328 RVGMIYF 334 (367)
Q Consensus 328 Rcg~v~~ 334 (367)
|...+++
T Consensus 577 rf~e~~f 583 (1856)
T KOG1808|consen 577 RFIELHF 583 (1856)
T ss_pred cchhhhh
Confidence 5555554
No 11
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.37 E-value=1.2e-05 Score=80.64 Aligned_cols=244 Identities=16% Similarity=0.181 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC----cccccCHHHHHHHhhcCCCccchhhhHHHHHHHhHhhhhhhhhhhcccCCCce
Q psy4734 75 NLMLELIQKGLNDYLEKKRLFFP----RFFFLSNDELLEILSETKDPLRVQPHLKKIFEASMALISGLVATLNLLFFPRF 150 (367)
Q Consensus 75 ~~~Le~i~k~L~~yLe~KR~~FP----RfyFLsdedLl~il~~~~~~~~i~~~l~k~f~~i~~l~~~l~~~~~~~~fprf 150 (367)
......|.+...+|+..+.-..| +.|.-++-|+.+ .-++..++..|...-.++..+...-.+. .-|.-
T Consensus 92 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~~~~~~~s~~~~----~~p~~ 163 (459)
T PRK11331 92 WQFSSDIPKTIAEYFQATSGVYPKKYGQSYYACSQKVSQ----GLDYTRFASMLDNIINDYKLIFNSGKSV----IPPMS 163 (459)
T ss_pred HHHHhhHHHHHHHHHhcccCCCccccCceeEeecccccc----CCCHHHHHHHHhhHHHHHHHhhcccccc----CCchh
Confidence 34446688889999988655555 455555655433 3344444444333333333222111111 11110
Q ss_pred eecchHHHHHHHHhcCCcccchhhHHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCC
Q psy4734 151 FFLSNDELLEILSETKDPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK 230 (367)
Q Consensus 151 ~f~s~~~Ll~ils~~~~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpk 230 (367)
- ...-.+...+++..-+......+...+.....+++.||||+|||++.+.++..+..-. ...++....+.|
T Consensus 164 ~-~~~y~~~~~l~d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~-------~~~~v~~VtFHp- 234 (459)
T PRK11331 164 K-TESYCLEDALNDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEK-------APQRVNMVQFHQ- 234 (459)
T ss_pred c-ccchhHHHHhhcccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCc-------ccceeeEEeecc-
Confidence 0 0000111222222222222333444556678899999999999999999887764210 012344433443
Q ss_pred CCccccccceeccc--ccccccchHHHHHHHHhcCCCCCceEEEEc----CCCChHhhhhhhhccCCCC-----ceeec-
Q psy4734 231 SITMGQLYGEFDSA--SHEWRDGILAKTFREMAVSTTPDRKWIMFD----GPIDAVWIENMNTVLDDNK-----KLCLI- 298 (367)
Q Consensus 231 a~t~~~l~G~~d~~--~~~W~dGil~~~~r~~~~~~~~~~~wivfD----G~~d~~wie~lnsvlddn~-----~l~L~- 298 (367)
..+..++.|.+.|. ...|.+|+|.++.+++... ...+.++|+| |+++..+=|.+ ++|+..+ .+.|+
T Consensus 235 sySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~-p~~~~vliIDEINRani~kiFGel~-~lLE~~~rg~~~~v~l~y 312 (459)
T PRK11331 235 SYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ-PEKKYVFIIDEINRANLSKVFGEVM-MLMEHDKRGENWSVPLTY 312 (459)
T ss_pred cccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc-ccCCcEEEEehhhccCHHHhhhhhh-hhccccccccccceeeec
Confidence 34556666555443 3468999999998887543 3456899999 44444444443 3555321 23332
Q ss_pred ---ccceeecCCCCeEEEecCC----CCccCcchhhceeeEEeccc
Q psy4734 299 ---NGEIIKMSNTMNLIFECEN----LEFASPATVSRVGMIYFELK 337 (367)
Q Consensus 299 ---~ge~i~l~~~~~~ifE~~~----l~~asPatvsRcg~v~~~~~ 337 (367)
+++.+.+|+++++|-=+.. +....+|..-|-..|.+.|.
T Consensus 313 ~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 313 SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred cccccccccCCCCeEEEEecCccccchhhccHHHHhhhheEEecCC
Confidence 2578999999987755433 33578899999999999985
No 12
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.14 E-value=3.9e-06 Score=92.74 Aligned_cols=135 Identities=17% Similarity=0.297 Sum_probs=107.3
Q ss_pred HhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC-ccccccceecccc--c--ccccchH
Q psy4734 179 FEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGEFDSAS--H--EWRDGIL 253 (367)
Q Consensus 179 ~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~-t~~~l~G~~d~~~--~--~W~dGil 253 (367)
+++..++++.|.||.|||+++..||...+. ....||-... .+-+|||..-|+. + .|.|..|
T Consensus 1540 mqv~kpilLEGsPGVGKTSlItaLAr~tG~--------------kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapf 1605 (4600)
T COG5271 1540 MQVGKPILLEGSPGVGKTSLITALARKTGK--------------KLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPF 1605 (4600)
T ss_pred HhcCCceeecCCCCccHHHHHHHHHHHhcC--------------ceEEeeccccchHHHHhCCCCCcccCceeEecccHH
Confidence 567788999999999999999988765432 2445776655 4778999987765 3 3999999
Q ss_pred HHHHHHHhcCCCCCceEEEEcCC--CChHhhhhhhhccCCCCceeecccce-eecCCCCeEEEecCCCCc-------cCc
Q psy4734 254 AKTFREMAVSTTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEI-IKMSNTMNLIFECENLEF-------ASP 323 (367)
Q Consensus 254 ~~~~r~~~~~~~~~~~wivfDG~--~d~~wie~lnsvlddn~~l~L~~ge~-i~l~~~~~~ifE~~~l~~-------asP 323 (367)
..+||.+ .|+++|-- ....-+|.||++||+.+....|.-+. ..+.|+++ +|.+.+-.+ ...
T Consensus 1606 L~amr~G--------~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~Hpnfr-VFAaqNPq~qggGRKgLPk 1676 (4600)
T COG5271 1606 LHAMRDG--------GWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFR-VFAAQNPQDQGGGRKGLPK 1676 (4600)
T ss_pred HHHhhcC--------CEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCee-eeeecCchhcCCCcccCCH
Confidence 9999988 99999932 35678999999999999999987764 45778875 667777543 455
Q ss_pred chhhceeeEEecc
Q psy4734 324 ATVSRVGMIYFEL 336 (367)
Q Consensus 324 atvsRcg~v~~~~ 336 (367)
+.+.|..+|||+.
T Consensus 1677 SF~nRFsvV~~d~ 1689 (4600)
T COG5271 1677 SFLNRFSVVKMDG 1689 (4600)
T ss_pred HHhhhhheEEecc
Confidence 9999999999985
No 13
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.62 E-value=0.0079 Score=63.51 Aligned_cols=166 Identities=18% Similarity=0.232 Sum_probs=81.5
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCcc------ccccceecccccccccchHHH-
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITM------GQLYGEFDSASHEWRDGILAK- 255 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~------~~l~G~~d~~~~~W~dGil~~- 255 (367)
..+.|.||+|+||||+.+.+............ .....+..++...+.. ..++|.. .+.....
T Consensus 176 ~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~----~~~~~fv~i~~~~l~~d~~~i~~~llg~~-------~~~~~~~a 244 (615)
T TIGR02903 176 QHIILYGPPGVGKTTAARLALEEAKKLKHTPF----AEDAPFVEVDGTTLRWDPREVTNPLLGSV-------HDPIYQGA 244 (615)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhccCCcc----cCCCCeEEEechhccCCHHHHhHHhcCCc-------cHHHHHHH
Confidence 35888999999999999988765432211100 0011233444433321 1345532 1111111
Q ss_pred --HHHHHhcC-------CCCCceEEEEc--CCCChHhhhhhhhccCCCCceeeccc------cee--------e--cCCC
Q psy4734 256 --TFREMAVS-------TTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLING------EII--------K--MSNT 308 (367)
Q Consensus 256 --~~r~~~~~-------~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~g------e~i--------~--l~~~ 308 (367)
.++..... +....--+++| +.+|+.-.+.|-.++.+.+..-. ++ +.+ . .+.+
T Consensus 245 ~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~-~~~~~~~~~~~~~~ik~~~~~~~~~~ 323 (615)
T TIGR02903 245 RRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFS-SSYYDPDDPNVPKYIKKLFEEGAPAD 323 (615)
T ss_pred HHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEee-cceeccCCcccchhhhhhcccCccce
Confidence 11111000 01112378888 44566666777777766443322 22 100 0 1223
Q ss_pred CeEEEecC-CCCccCcchhhceeeEEecccCC-chHHHHHHHHHHhhhhhhHHH
Q psy4734 309 MNLIFECE-NLEFASPATVSRVGMIYFELKCI-SWTTFFLSYQNELKEKLNEEQ 360 (367)
Q Consensus 309 ~~~ifE~~-~l~~asPatvsRcg~v~~~~~~~-~~~~~~~swl~~~~~~~~~~~ 360 (367)
+.++.-|+ +.....|+..|||..+++.+-.- ....++..-+......+.++.
T Consensus 324 ~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~ea 377 (615)
T TIGR02903 324 FVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGV 377 (615)
T ss_pred EEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 44444443 46678899999999999987431 133444444443322344443
No 14
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.00015 Score=71.68 Aligned_cols=139 Identities=20% Similarity=0.186 Sum_probs=73.0
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccc--cceecccccccccchHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQL--YGEFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l--~G~~d~~~~~W~dGil~~~~r~ 259 (367)
.|.++|.||+|+||||+.+.+++++.--.... ..+... ..++..+..+.. +..+|+.++...+- +..++..
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-----~~pc~~-c~~c~~~~~~~~~d~~~~~~~~~~~v~~-ir~i~~~ 110 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-----SNPCRK-CIICKEIEKGLCLDLIEIDAASRTKVEE-MREILDN 110 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-----CCCCCC-CHHHHHHhcCCCCceEEecccccCCHHH-HHHHHHH
Confidence 46789999999999999999998875110000 000000 000000000000 11123322111111 2223322
Q ss_pred HhcCC-CCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccC
Q psy4734 260 MAVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKC 338 (367)
Q Consensus 260 ~~~~~-~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~ 338 (367)
+.... ....+.+|+|. +|..--+..|.+|. .-| ..++++.+||-+++.....|+..|||-.+.+.+-.
T Consensus 111 ~~~~p~~~~~kviIIDE-a~~l~~~a~naLLk--------~lE--e~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~ 179 (363)
T PRK14961 111 IYYSPSKSRFKVYLIDE-VHMLSRHSFNALLK--------TLE--EPPQHIKFILATTDVEKIPKTILSRCLQFKLKIIS 179 (363)
T ss_pred HhcCcccCCceEEEEEC-hhhcCHHHHHHHHH--------HHh--cCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCC
Confidence 22222 24568999994 55444344444331 111 13557788998989888888889999999888754
No 15
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.00027 Score=74.90 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=81.2
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc---cccccceecccccccccch--HHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT---MGQLYGEFDSASHEWRDGI--LAKT 256 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t---~~~l~G~~d~~~~~W~dGi--l~~~ 256 (367)
.|.++|.|++|+||||+.+.+++.++--.... ..+... .-++..+. ..++ =.+|..++ .|+ +-.+
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-----~~PCG~-C~sCr~I~~G~h~Dv-iEIDAas~---rgVDdIReL 107 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-----SQPCGV-CRACREIDEGRFVDY-VEMDAASN---RGVDEMAAL 107 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-----CCCCcc-cHHHHHHhcCCCceE-EEeccccc---ccHHHHHHH
Confidence 56788999999999999999999885211000 000000 00000000 0011 11232221 122 2223
Q ss_pred HHHHhc-CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEec
Q psy4734 257 FREMAV-STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFE 335 (367)
Q Consensus 257 ~r~~~~-~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~ 335 (367)
++.... ......|.+|+| ++|..--+..|.+|. +| | .-+++++|||-+++...+.|...|||-.+.+.
T Consensus 108 Ie~a~~~P~~gr~KVIIID-Eah~LT~~A~NALLK-----tL---E--EPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk 176 (830)
T PRK07003 108 LERAVYAPVDARFKVYMID-EVHMLTNHAFNAMLK-----TL---E--EPPPHVKFILATTDPQKIPVTVLSRCLQFNLK 176 (830)
T ss_pred HHHHHhccccCCceEEEEe-ChhhCCHHHHHHHHH-----HH---H--hcCCCeEEEEEECChhhccchhhhheEEEecC
Confidence 333221 123457899999 566555555565531 01 1 23668999999999999999999999999997
Q ss_pred ccCCchHHHHHHHHHH
Q psy4734 336 LKCISWTTFFLSYQNE 351 (367)
Q Consensus 336 ~~~~~~~~~~~swl~~ 351 (367)
+-.. .-+..||..
T Consensus 177 ~Ls~---eeIv~~L~~ 189 (830)
T PRK07003 177 QMPA---GHIVSHLER 189 (830)
T ss_pred CcCH---HHHHHHHHH
Confidence 6432 334445444
No 16
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.00013 Score=75.15 Aligned_cols=141 Identities=17% Similarity=0.134 Sum_probs=81.8
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhcc----------ccccceeEEEEeCCCCCccccccceeccccccccc
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA----------TMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRD 250 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~----------~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~d 250 (367)
..|..+|.||+|+||||+.+.++++++-....... -..+....+..+ |+.++ .
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei--------------daas~---~ 99 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV--------------DAASR---T 99 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE--------------ccccc---C
Confidence 35667899999999999999999998632110000 000111112222 32221 1
Q ss_pred chHHHHHHHHhc-----CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcch
Q psy4734 251 GILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPAT 325 (367)
Q Consensus 251 Gil~~~~r~~~~-----~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPat 325 (367)
|+ .-+|+... ......|.+|+| .+|..-.+..|.+|. +|- ..|+++.|||-+++.....|..
T Consensus 100 ~v--~~iR~l~~~~~~~p~~~~~kV~iID-E~~~ls~~a~naLLk-----~LE-----epp~~~~fIlattd~~kl~~tI 166 (509)
T PRK14958 100 KV--EDTRELLDNIPYAPTKGRFKVYLID-EVHMLSGHSFNALLK-----TLE-----EPPSHVKFILATTDHHKLPVTV 166 (509)
T ss_pred CH--HHHHHHHHHHhhccccCCcEEEEEE-ChHhcCHHHHHHHHH-----HHh-----ccCCCeEEEEEECChHhchHHH
Confidence 11 11222221 223457999999 566555566665541 111 2467899999999998888888
Q ss_pred hhceeeEEecccC-CchHHHHHHHHHH
Q psy4734 326 VSRVGMIYFELKC-ISWTTFFLSYQNE 351 (367)
Q Consensus 326 vsRcg~v~~~~~~-~~~~~~~~swl~~ 351 (367)
.|||-.+.+.+-. -.....+..+++.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~l~~il~~ 193 (509)
T PRK14958 167 LSRCLQFHLAQLPPLQIAAHCQHLLKE 193 (509)
T ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHH
Confidence 9999999997643 2233444445443
No 17
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.48 E-value=0.0002 Score=59.07 Aligned_cols=113 Identities=20% Similarity=0.287 Sum_probs=67.1
Q ss_pred heeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhcCC
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVST 264 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~~ 264 (367)
+++.||+|+|||++++.++..++ +....+++..+. +...|.. ...+..+++++....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--------------~~~~~i~~~~~~-~~~~~~~--------~~~i~~~~~~~~~~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--------------FPFIEIDGSELI-SSYAGDS--------EQKIRDFFKKAKKSA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--------------SEEEEEETTHHH-TSSTTHH--------HHHHHHHHHHHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--------------cccccccccccc-ccccccc--------ccccccccccccccc
Confidence 46889999999999999988762 223334444332 1111111 112444455443322
Q ss_pred CCCceEEEEcCCCChHhhhh-----------hh---hccCCCCceeecccceeecCCCCeEEEecCCCCccCcchh-hce
Q psy4734 265 TPDRKWIMFDGPIDAVWIEN-----------MN---TVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV-SRV 329 (367)
Q Consensus 265 ~~~~~wivfDG~~d~~wie~-----------ln---svlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatv-sRc 329 (367)
.+.-+++| ++|...-.. ++ ..++....- ..++.+|+-+.+.....|+.. +||
T Consensus 58 --~~~vl~iD-e~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~----------~~~~~vI~ttn~~~~i~~~l~~~rf 124 (132)
T PF00004_consen 58 --KPCVLFID-EIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK----------NSRVIVIATTNSPDKIDPALLRSRF 124 (132)
T ss_dssp --TSEEEEEE-TGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT----------SSSEEEEEEESSGGGSCHHHHSTTS
T ss_pred --cceeeeec-cchhcccccccccccccccccceeeecccccccc----------cccceeEEeeCChhhCCHhHHhCCC
Confidence 46889999 665554444 22 222321111 456778888888999999999 998
Q ss_pred eeEE
Q psy4734 330 GMIY 333 (367)
Q Consensus 330 g~v~ 333 (367)
....
T Consensus 125 ~~~i 128 (132)
T PF00004_consen 125 DRRI 128 (132)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 7653
No 18
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.41 E-value=0.00044 Score=60.36 Aligned_cols=134 Identities=22% Similarity=0.241 Sum_probs=72.6
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhcc---------ccccceeEEEEeCCCCCccccccceecccccccccc
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA---------TMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG 251 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~---------~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dG 251 (367)
..|.++|.||+|+||++++..+++.+.--.....+ ......-.++.+.|..-. ....-.
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~------------~~i~i~ 85 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK------------KSIKID 85 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS------------SSBSHH
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc------------chhhHH
Confidence 45778999999999999999998876322211000 000001111112222110 011100
Q ss_pred hHHHHHHHHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhcee
Q psy4734 252 ILAKTFREMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG 330 (367)
Q Consensus 252 il~~~~r~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg 330 (367)
-+-.+...+... .....|-+|+| ++|..-.+.-|.+|- +| | ..|+++.||+=+++....-|...|||-
T Consensus 86 ~ir~i~~~~~~~~~~~~~KviiI~-~ad~l~~~a~NaLLK---~L-----E--epp~~~~fiL~t~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 86 QIREIIEFLSLSPSEGKYKVIIID-EADKLTEEAQNALLK---TL-----E--EPPENTYFILITNNPSKILPTIRSRCQ 154 (162)
T ss_dssp HHHHHHHHCTSS-TTSSSEEEEEE-TGGGS-HHHHHHHHH---HH-----H--STTTTEEEEEEES-GGGS-HHHHTTSE
T ss_pred HHHHHHHHHHHHHhcCCceEEEee-hHhhhhHHHHHHHHH---Hh-----c--CCCCCEEEEEEECChHHChHHHHhhce
Confidence 111222222222 23468999999 677666777777651 11 1 236689999999999999999999999
Q ss_pred eEEeccc
Q psy4734 331 MIYFELK 337 (367)
Q Consensus 331 ~v~~~~~ 337 (367)
.+++.+-
T Consensus 155 ~i~~~~l 161 (162)
T PF13177_consen 155 VIRFRPL 161 (162)
T ss_dssp EEEE---
T ss_pred EEecCCC
Confidence 9999763
No 19
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.00014 Score=75.88 Aligned_cols=141 Identities=21% Similarity=0.229 Sum_probs=79.2
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc---cccccceecccccccccch--HHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT---MGQLYGEFDSASHEWRDGI--LAKT 256 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t---~~~l~G~~d~~~~~W~dGi--l~~~ 256 (367)
.|.++|.|++|+||||+.+.+++++.-............+... .-++..+. ..+++ .+|..+ ..|+ +-.+
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~-C~sC~~I~aG~hpDvi-EIdAas---~~gVDdIReL 112 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ-CRACTEIDAGRFVDYI-EMDAAS---NRGVDEMAQL 112 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc-cHHHHHHHcCCCCcce-Eecccc---cCCHHHHHHH
Confidence 4778999999999999999999998531100000000000000 00000000 01111 123221 1122 1112
Q ss_pred HHHHhc-CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEec
Q psy4734 257 FREMAV-STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFE 335 (367)
Q Consensus 257 ~r~~~~-~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~ 335 (367)
+..... ......|-+|+| ++|..-.+..|.+|. + | | .-+.++.||+=|++.....|...|||-.+.+.
T Consensus 113 ie~~~~~P~~gr~KViIID-Eah~Ls~~AaNALLK---T--L---E--EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~ 181 (700)
T PRK12323 113 LDKAVYAPTAGRFKVYMID-EVHMLTNHAFNAMLK---T--L---E--EPPEHVKFILATTDPQKIPVTVLSRCLQFNLK 181 (700)
T ss_pred HHHHHhchhcCCceEEEEE-ChHhcCHHHHHHHHH---h--h---c--cCCCCceEEEEeCChHhhhhHHHHHHHhcccC
Confidence 222211 123457899999 677766677777652 1 1 1 13568899999999999999999999999998
Q ss_pred ccC
Q psy4734 336 LKC 338 (367)
Q Consensus 336 ~~~ 338 (367)
+-.
T Consensus 182 ~ls 184 (700)
T PRK12323 182 QMP 184 (700)
T ss_pred CCC
Confidence 654
No 20
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.37 E-value=0.0003 Score=76.13 Aligned_cols=150 Identities=20% Similarity=0.206 Sum_probs=81.5
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhcccccccee-EEEEeCC---CCCccccccceecccccccccchHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKT-GYKIINP---KSITMGQLYGEFDSASHEWRDGILAKT 256 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v-~~~~inp---ka~t~~~l~G~~d~~~~~W~dGil~~~ 256 (367)
..|.++|.||+|+||||+.++|++.|.-...... .. .... ....|+. ....+-+ +|..++.=.|-+- .+
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-~p-Cg~C~sC~~~~~g~~~~~dv~e----idaas~~~Vd~iR-~l 108 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-TP-CGECDSCVALAPGGPGSLDVTE----IDAASHGGVDDAR-EL 108 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-CC-CcccHHHHHHHcCCCCCCcEEE----ecccccCCHHHHH-HH
Confidence 3577899999999999999999998852110000 00 0000 0000110 1111111 1111110011111 11
Q ss_pred HHHHh-cCCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEec
Q psy4734 257 FREMA-VSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFE 335 (367)
Q Consensus 257 ~r~~~-~~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~ 335 (367)
...+. .......|.+|+| ++|..-.+..|.+|. +|- ..++++.|||-+++...+-|+..|||-++.|.
T Consensus 109 ~~~~~~~p~~~~~KV~IID-Ead~lt~~a~NaLLK---~LE-------EpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~ 177 (824)
T PRK07764 109 RERAFFAPAESRYKIFIID-EAHMVTPQGFNALLK---IVE-------EPPEHLKFIFATTEPDKVIGTIRSRTHHYPFR 177 (824)
T ss_pred HHHHHhchhcCCceEEEEe-chhhcCHHHHHHHHH---HHh-------CCCCCeEEEEEeCChhhhhHHHHhheeEEEee
Confidence 11111 1223567899999 666666677776541 110 15678889999988888888899999999998
Q ss_pred ccCCchHHHHHHHHHH
Q psy4734 336 LKCISWTTFFLSYQNE 351 (367)
Q Consensus 336 ~~~~~~~~~~~swl~~ 351 (367)
.-. ..-+..||..
T Consensus 178 ~l~---~~~l~~~L~~ 190 (824)
T PRK07764 178 LVP---PEVMRGYLER 190 (824)
T ss_pred CCC---HHHHHHHHHH
Confidence 653 1344556654
No 21
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.00047 Score=68.74 Aligned_cols=142 Identities=13% Similarity=0.153 Sum_probs=82.3
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhh------h---ccccccceeEEEEeCCCCCccccccceecccccccccc
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAK------K---SATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG 251 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~------~---~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dG 251 (367)
..|+++|.||+|+|||++.+.+++++.--... . .....+....++.+.|...+ -..|-
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~-------------i~i~~ 101 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLS-------------IGVDE 101 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccccc-------------CCHHH
Confidence 35789999999999999999999887421100 0 00000111122223332110 00111
Q ss_pred hHHHHHHHHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhcee
Q psy4734 252 ILAKTFREMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG 330 (367)
Q Consensus 252 il~~~~r~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg 330 (367)
+-.+++.+... .....+.+++| ++|..-.+..|++|.- | | ..+++..+|+-+++.....|+.+|||-
T Consensus 102 -iR~l~~~~~~~p~~~~~kViiID-ead~m~~~aanaLLk~-----L---E--ep~~~~~fIL~a~~~~~llpTIrSRc~ 169 (394)
T PRK07940 102 -VRELVTIAARRPSTGRWRIVVIE-DADRLTERAANALLKA-----V---E--EPPPRTVWLLCAPSPEDVLPTIRSRCR 169 (394)
T ss_pred -HHHHHHHHHhCcccCCcEEEEEe-chhhcCHHHHHHHHHH-----h---h--cCCCCCeEEEEECChHHChHHHHhhCe
Confidence 22333333322 23467889998 6665555555655421 1 1 135577789999999999999999999
Q ss_pred eEEecccCCchHHHHHHHHH
Q psy4734 331 MIYFELKCISWTTFFLSYQN 350 (367)
Q Consensus 331 ~v~~~~~~~~~~~~~~swl~ 350 (367)
.+++.+-.- .-+..|+.
T Consensus 170 ~i~f~~~~~---~~i~~~L~ 186 (394)
T PRK07940 170 HVALRTPSV---EAVAEVLV 186 (394)
T ss_pred EEECCCCCH---HHHHHHHH
Confidence 999987642 34566665
No 22
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.00019 Score=72.68 Aligned_cols=146 Identities=19% Similarity=0.191 Sum_probs=81.5
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc---cccccceecccccccccch--HHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT---MGQLYGEFDSASHEWRDGI--LAKTF 257 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t---~~~l~G~~d~~~~~W~dGi--l~~~~ 257 (367)
|.++|.||+|+||||+.+.++++++--.... ..+.... -.+..+. ..+ +..+|+.+. .|+ +-.+.
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-----~~pCg~C-~sC~~i~~g~~~d-viEIdaas~---~gVd~IReL~ 110 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCENPIG-----NEPCNEC-TSCLEITKGISSD-VLEIDAASN---RGIENIRELR 110 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcccccC-----ccccCCC-cHHHHHHccCCcc-ceeechhhc---ccHHHHHHHH
Confidence 5579999999999999999999875321000 0000000 0000000 001 122343221 122 11111
Q ss_pred HHHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecc
Q psy4734 258 REMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 336 (367)
Q Consensus 258 r~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~ 336 (367)
..+... .....+-+|+| .+|..-.+..|.+|. +=| .-+.++.||+-+++.....|+.+|||-.+++.+
T Consensus 111 e~l~~~p~~g~~KV~IID-Eah~Ls~~A~NALLK--------tLE--EPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ 179 (484)
T PRK14956 111 DNVKFAPMGGKYKVYIID-EVHMLTDQSFNALLK--------TLE--EPPAHIVFILATTEFHKIPETILSRCQDFIFKK 179 (484)
T ss_pred HHHHhhhhcCCCEEEEEe-chhhcCHHHHHHHHH--------Hhh--cCCCceEEEeecCChhhccHHHHhhhheeeecC
Confidence 111111 22356889999 666666666666531 112 235688899999999999999999999999876
Q ss_pred cCCchHHHHHHHHHHh
Q psy4734 337 KCISWTTFFLSYQNEL 352 (367)
Q Consensus 337 ~~~~~~~~~~swl~~~ 352 (367)
-.. .-+..|+..+
T Consensus 180 ls~---~~i~~~L~~i 192 (484)
T PRK14956 180 VPL---SVLQDYSEKL 192 (484)
T ss_pred CCH---HHHHHHHHHH
Confidence 642 3445555544
No 23
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.00023 Score=74.51 Aligned_cols=152 Identities=19% Similarity=0.232 Sum_probs=82.1
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccc--cceecccccccccch--HHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQL--YGEFDSASHEWRDGI--LAKTF 257 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l--~G~~d~~~~~W~dGi--l~~~~ 257 (367)
.|.++|.||+|+||||+.+.++++++-............+... .-++..+..+.. |=.+|..+ ..|+ +-.++
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~-C~~C~~i~~g~h~D~~eldaas---~~~Vd~iReli 113 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV-CQACRDIDSGRFVDYTELDAAS---NRGVDEVQQLL 113 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc-cHHHHHHHcCCCCceeecCccc---ccCHHHHHHHH
Confidence 4678999999999999999999998632110000000000000 000000000000 00122221 1222 11222
Q ss_pred HHHhc-CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecc
Q psy4734 258 REMAV-STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 336 (367)
Q Consensus 258 r~~~~-~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~ 336 (367)
..+.. ......+.+|+| ++|..-.+..|.+| |. -| ..|+++.|||-|++....-|...|||-.+.+.+
T Consensus 114 ~~~~~~p~~g~~KV~IID-Evh~Ls~~a~NaLL---Kt-----LE--EPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~ 182 (618)
T PRK14951 114 EQAVYKPVQGRFKVFMID-EVHMLTNTAFNAML---KT-----LE--EPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRP 182 (618)
T ss_pred HHHHhCcccCCceEEEEE-ChhhCCHHHHHHHH---Hh-----cc--cCCCCeEEEEEECCchhhhHHHHHhceeeecCC
Confidence 22211 123457899999 77766666777655 11 11 246788999999998888888899999999976
Q ss_pred cCCchHHHHHHHHHH
Q psy4734 337 KCISWTTFFLSYQNE 351 (367)
Q Consensus 337 ~~~~~~~~~~swl~~ 351 (367)
-.- .-+..||..
T Consensus 183 Ls~---eei~~~L~~ 194 (618)
T PRK14951 183 MAP---ETVLEHLTQ 194 (618)
T ss_pred CCH---HHHHHHHHH
Confidence 542 334445543
No 24
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.00083 Score=68.59 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=76.8
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhc----------cccccceeEEEEeCCCCCccccccceecccccccccc
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS----------ATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG 251 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~----------~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dG 251 (367)
.|.++|.||+|+||||+.++++++++-..+... .-..+....+..+|+.+ +.=.|-
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas--------------~~~vdd 100 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS--------------NTSVDD 100 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc--------------CCCHHH
Confidence 467999999999999999999998853211100 00001122223333322 110011
Q ss_pred hHHHHHHHHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhcee
Q psy4734 252 ILAKTFREMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG 330 (367)
Q Consensus 252 il~~~~r~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg 330 (367)
+-.++..+... -....|.+|+|. +|..-.+..|.+|. .-| ..|+++.|||-+++.....+...|||-
T Consensus 101 -IR~Iie~~~~~P~~~~~KVvIIDE-ah~Ls~~A~NaLLK--------~LE--ePp~~v~fIlatte~~Kl~~tI~SRc~ 168 (491)
T PRK14964 101 -IKVILENSCYLPISSKFKVYIIDE-VHMLSNSAFNALLK--------TLE--EPAPHVKFILATTEVKKIPVTIISRCQ 168 (491)
T ss_pred -HHHHHHHHHhccccCCceEEEEeC-hHhCCHHHHHHHHH--------HHh--CCCCCeEEEEEeCChHHHHHHHHHhhe
Confidence 11122222111 224679999994 55554555555431 111 246789999999999999898899999
Q ss_pred eEEecccC
Q psy4734 331 MIYFELKC 338 (367)
Q Consensus 331 ~v~~~~~~ 338 (367)
.+.+.+-.
T Consensus 169 ~~~f~~l~ 176 (491)
T PRK14964 169 RFDLQKIP 176 (491)
T ss_pred eeeccccc
Confidence 99987554
No 25
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.00034 Score=71.48 Aligned_cols=136 Identities=24% Similarity=0.276 Sum_probs=89.5
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccc--eecccccccccchHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYG--EFDSASHEWRDGILAKTFR 258 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G--~~d~~~~~W~dGil~~~~r 258 (367)
..|+-+|.||-|+||||+.++++++++=.... ...+.. ...++++++.+...- .+|..++. || .-+|
T Consensus 37 i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~-----~~ePC~-~C~~Ck~I~~g~~~DviEiDaASn~---gV--ddiR 105 (515)
T COG2812 37 IAHAYLFSGPRGVGKTTIARILAKALNCENGP-----TAEPCG-KCISCKEINEGSLIDVIEIDAASNT---GV--DDIR 105 (515)
T ss_pred chhhhhhcCCCCcCchhHHHHHHHHhcCCCCC-----CCCcch-hhhhhHhhhcCCcccchhhhhhhcc---Ch--HHHH
Confidence 45889999999999999999999999644211 111111 123445554331111 13444443 22 2234
Q ss_pred HHhc---C--CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEE
Q psy4734 259 EMAV---S--TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIY 333 (367)
Q Consensus 259 ~~~~---~--~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~ 333 (367)
+... . .....|-+++| .++..-....|++|- +|- .-|+++.|||-|++....-|-.+|||--..
T Consensus 106 ~i~e~v~y~P~~~ryKVyiID-EvHMLS~~afNALLK---TLE-------EPP~hV~FIlATTe~~Kip~TIlSRcq~f~ 174 (515)
T COG2812 106 EIIEKVNYAPSEGRYKVYIID-EVHMLSKQAFNALLK---TLE-------EPPSHVKFILATTEPQKIPNTILSRCQRFD 174 (515)
T ss_pred HHHHHhccCCccccceEEEEe-cHHhhhHHHHHHHhc---ccc-------cCccCeEEEEecCCcCcCchhhhhcccccc
Confidence 4332 1 23456889999 888888888998862 221 468899999999999999888899999887
Q ss_pred ecccC
Q psy4734 334 FELKC 338 (367)
Q Consensus 334 ~~~~~ 338 (367)
+..-+
T Consensus 175 fkri~ 179 (515)
T COG2812 175 FKRLD 179 (515)
T ss_pred ccCCC
Confidence 76433
No 26
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.0019 Score=65.98 Aligned_cols=147 Identities=25% Similarity=0.253 Sum_probs=73.3
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCcccc--ccceecccccccccch--HHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQ--LYGEFDSASHEWRDGI--LAKTF 257 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~--l~G~~d~~~~~W~dGi--l~~~~ 257 (367)
.|+++|.||+|+||||+.+.+++++....... ..+.... -++..+..+. -+-.+|... ..|+ +-.+.
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~-----~~pc~~c-~~c~~i~~g~~~dv~el~aa~---~~gid~iR~i~ 106 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCENRKG-----VEPCNEC-RACRSIDEGTFMDVIELDAAS---NRGIDEIRKIR 106 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCC-----CCCCccc-HHHHHHhcCCCCccEEEeCcc---cCCHHHHHHHH
Confidence 35678999999999999999998875321100 0000000 0111111111 111223321 1121 11111
Q ss_pred HHHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecc
Q psy4734 258 REMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 336 (367)
Q Consensus 258 r~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~ 336 (367)
..+... ....++-+++| .+|..--+..+.+|. ++ | ..++++.+|+-+++.....|+..|||.++.+.+
T Consensus 107 ~~~~~~p~~~~~kVvIID-E~h~Lt~~a~~~LLk-----~L---E--~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~ 175 (472)
T PRK14962 107 DAVGYRPMEGKYKVYIID-EVHMLTKEAFNALLK-----TL---E--EPPSHVVFVLATTNLEKVPPTIISRCQVIEFRN 175 (472)
T ss_pred HHHhhChhcCCeEEEEEE-ChHHhHHHHHHHHHH-----HH---H--hCCCcEEEEEEeCChHhhhHHHhcCcEEEEECC
Confidence 111111 22356788899 344332233333321 01 1 124456677777777788899999999999976
Q ss_pred cCCchHHHHHHHHHH
Q psy4734 337 KCISWTTFFLSYQNE 351 (367)
Q Consensus 337 ~~~~~~~~~~swl~~ 351 (367)
-.- .-+..|+..
T Consensus 176 l~~---~el~~~L~~ 187 (472)
T PRK14962 176 ISD---ELIIKRLQE 187 (472)
T ss_pred ccH---HHHHHHHHH
Confidence 542 224455544
No 27
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.19 E-value=0.0012 Score=54.51 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=21.9
Q ss_pred hhhheeccccCCCchhhHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
...+++.||+|+|||++.+.++..+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 45688899999999999988877664
No 28
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.18 E-value=0.00059 Score=70.07 Aligned_cols=141 Identities=18% Similarity=0.164 Sum_probs=74.8
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC---ccccccceecccccccccchHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI---TMGQLYGEFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~---t~~~l~G~~d~~~~~W~dGil~~~~r~ 259 (367)
|.++|.||+|+||||+.++++++++-....... ....+... .-++..+ ...++ -.+|..++.=.|- +-.++..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~-~~~~~C~~-C~~C~~i~~~~h~Dv-~eidaas~~~vd~-Ir~iie~ 119 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITEN-TTIKTCEQ-CTNCISFNNHNHPDI-IEIDAASKTSVDD-IRRIIES 119 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCccccccC-cCcCCCCC-ChHHHHHhcCCCCcE-EEeeccCCCCHHH-HHHHHHH
Confidence 678999999999999999999988632110000 00000000 0000000 00011 1223322111111 1222222
Q ss_pred HhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccC
Q psy4734 260 MAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKC 338 (367)
Q Consensus 260 ~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~ 338 (367)
+... -....+-+|+|. ++..--+.+|.++.- | | ..++++.|||-+++.....|+..|||..+.+.+-.
T Consensus 120 a~~~P~~~~~KVvIIDE-a~~Ls~~a~naLLk~-----L---E--epp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls 188 (507)
T PRK06645 120 AEYKPLQGKHKIFIIDE-VHMLSKGAFNALLKT-----L---E--EPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLS 188 (507)
T ss_pred HHhccccCCcEEEEEEC-hhhcCHHHHHHHHHH-----H---h--hcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCC
Confidence 2221 224578899993 444444455554311 1 1 24678889999999999988889999999887543
No 29
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.13 E-value=0.0016 Score=62.43 Aligned_cols=130 Identities=22% Similarity=0.231 Sum_probs=81.5
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhcc----------ccccceeEEEEeCCCCCccccccceeccccccccc
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA----------TMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRD 250 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~----------~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~d 250 (367)
..|.++|.||+|+|||++...|++.+.-....... ...+..-.++.+||.......
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-------------- 88 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-------------- 88 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--------------
Confidence 44579999999999999999999887522211000 000011233445555332111
Q ss_pred chHHHHHHHHhcC---C--CCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcch
Q psy4734 251 GILAKTFREMAVS---T--TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPAT 325 (367)
Q Consensus 251 Gil~~~~r~~~~~---~--~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPat 325 (367)
+....+|+.... . ....+-|++| ++|..-.+.-|.++ |+ ...-+.+..||+=+.+....-|..
T Consensus 89 -i~~~~vr~~~~~~~~~~~~~~~kviiid-ead~mt~~A~nall---k~-------lEep~~~~~~il~~n~~~~il~tI 156 (325)
T COG0470 89 -IIVEQVRELAEFLSESPLEGGYKVVIID-EADKLTEDAANALL---KT-------LEEPPKNTRFILITNDPSKILPTI 156 (325)
T ss_pred -chHHHHHHHHHHhccCCCCCCceEEEeC-cHHHHhHHHHHHHH---HH-------hccCCCCeEEEEEcCChhhccchh
Confidence 444555655432 1 2567899999 77776666666653 11 112355777888888899999988
Q ss_pred hhceeeEEecc
Q psy4734 326 VSRVGMIYFEL 336 (367)
Q Consensus 326 vsRcg~v~~~~ 336 (367)
.|||.++++.+
T Consensus 157 ~SRc~~i~f~~ 167 (325)
T COG0470 157 RSRCQRIRFKP 167 (325)
T ss_pred hhcceeeecCC
Confidence 89999999987
No 30
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.11 E-value=0.00064 Score=71.54 Aligned_cols=136 Identities=20% Similarity=0.211 Sum_probs=76.9
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccc---cccceecccccccccch--HHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMG---QLYGEFDSASHEWRDGI--LAKT 256 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~---~l~G~~d~~~~~W~dGi--l~~~ 256 (367)
.|.++|.||+|+||||+.+.+++++.--..... .+.... -.++.+..+ +++ .+|..+ ..|+ +-.+
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-----~pCg~C-~~C~~i~~g~~~D~i-eidaas---~~~VddiR~l 107 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-----TPCGEC-DNCREIEQGRFVDLI-EIDAAS---RTKVEDTREL 107 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-----CCCCCC-HHHHHHHcCCCCCce-eecccc---cCCHHHHHHH
Confidence 456789999999999999999998864211000 000000 000000000 110 122211 1222 1112
Q ss_pred HHHHhc-CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEec
Q psy4734 257 FREMAV-STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFE 335 (367)
Q Consensus 257 ~r~~~~-~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~ 335 (367)
+..+.. ......+-+|+| .+|..-.+..|.+|- +| | .-|++++||+-|++.....|...|||-.+++.
T Consensus 108 i~~~~~~p~~g~~KV~IID-Eah~Ls~~a~NALLK---tL-----E--EPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~ 176 (647)
T PRK07994 108 LDNVQYAPARGRFKVYLID-EVHMLSRHSFNALLK---TL-----E--EPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 (647)
T ss_pred HHHHHhhhhcCCCEEEEEe-chHhCCHHHHHHHHH---HH-----H--cCCCCeEEEEecCCccccchHHHhhheEeeCC
Confidence 222111 123467899999 666666666666541 11 1 24678899999999999988889999999998
Q ss_pred ccC
Q psy4734 336 LKC 338 (367)
Q Consensus 336 ~~~ 338 (367)
+-.
T Consensus 177 ~Ls 179 (647)
T PRK07994 177 ALD 179 (647)
T ss_pred CCC
Confidence 764
No 31
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.06 E-value=0.0042 Score=60.07 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=37.3
Q ss_pred CCceEEEEcCC--CChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccC
Q psy4734 266 PDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKC 338 (367)
Q Consensus 266 ~~~~wivfDG~--~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~ 338 (367)
.+.+-||+|-. ++....+.|...+++ .+++.++|+=+++....-|+..|||..+.+.+-.
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~-------------~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~ 185 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQ-------------YSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPT 185 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHh-------------ccCCCeEEEEeCChhhCchhhcCCceEEEecCCC
Confidence 34678999942 333344445544432 1344567776655556667788999999887654
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.04 E-value=0.0024 Score=61.14 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=69.1
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhcC
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 263 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~ 263 (367)
.+++.||+|+|||++.+.++..++. . ...++..... .-+.+...++..
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~------------~--~~~~~~~~~~---------------~~~~l~~~l~~~--- 79 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGV------------N--LKITSGPALE---------------KPGDLAAILTNL--- 79 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC------------C--EEEeccchhc---------------CchhHHHHHHhc---
Confidence 3788999999999999988765421 1 1111111110 012233334332
Q ss_pred CCCCceEEEEcC--CCChHhhhhhhhccCCCCce-eeccc---c--eeecCCCCeEEEecCCCCccCcchhhceeeE-Ee
Q psy4734 264 TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKL-CLING---E--IIKMSNTMNLIFECENLEFASPATVSRVGMI-YF 334 (367)
Q Consensus 264 ~~~~~~wivfDG--~~d~~wie~lnsvlddn~~l-~L~~g---e--~i~l~~~~~~ifE~~~l~~asPatvsRcg~v-~~ 334 (367)
.....+++|. .++..-.|.|.+++++.+.. .+.+| . +..++ .+.++.-|+.....+|+..|||+++ .+
T Consensus 80 --~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~li~~t~~~~~l~~~l~sR~~~~~~l 156 (305)
T TIGR00635 80 --EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLP-PFTLVGATTRAGMLTSPLRDRFGIILRL 156 (305)
T ss_pred --ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCC-CeEEEEecCCccccCHHHHhhcceEEEe
Confidence 2346888882 24455566777777665433 23333 1 23333 3667777777778899999999875 56
Q ss_pred ccc
Q psy4734 335 ELK 337 (367)
Q Consensus 335 ~~~ 337 (367)
++-
T Consensus 157 ~~l 159 (305)
T TIGR00635 157 EFY 159 (305)
T ss_pred CCC
Confidence 654
No 33
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.0016 Score=63.40 Aligned_cols=141 Identities=19% Similarity=0.181 Sum_probs=85.7
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhc----------cccccceeEEEEeCCCCCccccccceeccccccccc
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS----------ATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRD 250 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~----------~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~d 250 (367)
..|.++|.||+|.||+++.+.+++++.-...... ....+..-.++.+.|.. -..
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~----------------~~~ 84 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE----------------ADK 84 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC----------------CCC
Confidence 4577899999999999999999998842110000 00001111222233310 001
Q ss_pred chHHHHHHHHh----c-CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcch
Q psy4734 251 GILAKTFREMA----V-STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPAT 325 (367)
Q Consensus 251 Gil~~~~r~~~----~-~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPat 325 (367)
.+-..-+|+.. . ....++|.+|+| +.|..-.+.-|++|- +| | ..|++..||+-+++....-|..
T Consensus 85 ~i~id~iR~l~~~~~~~~~~~~~kv~iI~-~a~~m~~~aaNaLLK---~L-----E--EPp~~~~fiL~t~~~~~ll~TI 153 (328)
T PRK05707 85 TIKVDQVRELVSFVVQTAQLGGRKVVLIE-PAEAMNRNAANALLK---SL-----E--EPSGDTVLLLISHQPSRLLPTI 153 (328)
T ss_pred CCCHHHHHHHHHHHhhccccCCCeEEEEC-ChhhCCHHHHHHHHH---HH-----h--CCCCCeEEEEEECChhhCcHHH
Confidence 12122333332 2 223568889997 677766777777652 11 1 1356788999999999999999
Q ss_pred hhceeeEEecccCCchHHHHHHHHHH
Q psy4734 326 VSRVGMIYFELKCISWTTFFLSYQNE 351 (367)
Q Consensus 326 vsRcg~v~~~~~~~~~~~~~~swl~~ 351 (367)
.|||-.+.+.+-.- .-+..||..
T Consensus 154 ~SRc~~~~~~~~~~---~~~~~~L~~ 176 (328)
T PRK05707 154 KSRCQQQACPLPSN---EESLQWLQQ 176 (328)
T ss_pred HhhceeeeCCCcCH---HHHHHHHHH
Confidence 99999999986542 456677765
No 34
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0016 Score=67.37 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=73.3
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc---cccccceecccccccccch--HHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT---MGQLYGEFDSASHEWRDGI--LAKT 256 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t---~~~l~G~~d~~~~~W~dGi--l~~~ 256 (367)
.|.++|.||+|+||||+.+.+++.+.-...... .+... .-....+. ..+++. +|..+. -|+ +..+
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-----~pCg~-C~sC~~i~~~~~~dlie-idaas~---~gvd~ir~i 107 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTA-----EPCNK-CENCVAINNNSFIDLIE-IDAASR---TGVEETKEI 107 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-----CCCcc-cHHHHHHhcCCCCceEE-eecccc---cCHHHHHHH
Confidence 456789999999999999999998853111000 00000 00000000 011110 111110 111 1122
Q ss_pred HHHHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEec
Q psy4734 257 FREMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFE 335 (367)
Q Consensus 257 ~r~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~ 335 (367)
+..+... ....++-+|+| ++|..-.+..|.+|. +| | ..|+++.|||-|++....-|+..|||-++.+.
T Consensus 108 i~~~~~~p~~g~~kViIID-Ea~~ls~~a~naLLK-----~L---E--epp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~ 176 (546)
T PRK14957 108 LDNIQYMPSQGRYKVYLID-EVHMLSKQSFNALLK-----TL---E--EPPEYVKFILATTDYHKIPVTILSRCIQLHLK 176 (546)
T ss_pred HHHHHhhhhcCCcEEEEEe-chhhccHHHHHHHHH-----HH---h--cCCCCceEEEEECChhhhhhhHHHheeeEEeC
Confidence 2222211 23467899999 345444445554431 01 1 13678889999999888888889999999998
Q ss_pred ccC
Q psy4734 336 LKC 338 (367)
Q Consensus 336 ~~~ 338 (367)
+-.
T Consensus 177 ~Ls 179 (546)
T PRK14957 177 HIS 179 (546)
T ss_pred CCC
Confidence 764
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=96.99 E-value=0.0022 Score=62.17 Aligned_cols=130 Identities=19% Similarity=0.224 Sum_probs=70.9
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhcC
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 263 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~ 263 (367)
.++|.||+|+|||++++.+++.+..-. ....+..+|+.. ..| -.++-..++..+..
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~---------~~~~~~eln~sd-----~~~----------~~~vr~~i~~~~~~ 91 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPN---------YKEAVLELNASD-----DRG----------IDVVRNKIKMFAQK 91 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccc---------Cccceeeecccc-----ccc----------HHHHHHHHHHHHhc
Confidence 378899999999999999988763110 000111233211 011 01222233332221
Q ss_pred ----CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccCC
Q psy4734 264 ----TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCI 339 (367)
Q Consensus 264 ----~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~~ 339 (367)
.....+.+++| ++|..-...-+.++ +.+ | ..+++.+|+|-+.......|+..|||-++.+.+-.-
T Consensus 92 ~~~~~~~~~kviiiD-E~d~lt~~aq~aL~---~~l-----E--~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~ 160 (319)
T PLN03025 92 KVTLPPGRHKIVILD-EADSMTSGAQQALR---RTM-----E--IYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSD 160 (319)
T ss_pred cccCCCCCeEEEEEe-chhhcCHHHHHHHH---HHH-----h--cccCCceEEEEeCCccccchhHHHhhhcccCCCCCH
Confidence 12357899999 55443222222221 001 1 124567788877777788899999999998876531
Q ss_pred chHHHHHHHHHH
Q psy4734 340 SWTTFFLSYQNE 351 (367)
Q Consensus 340 ~~~~~~~swl~~ 351 (367)
.-+..|+..
T Consensus 161 ---~~l~~~L~~ 169 (319)
T PLN03025 161 ---QEILGRLMK 169 (319)
T ss_pred ---HHHHHHHHH
Confidence 333445544
No 36
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.96 E-value=0.003 Score=57.87 Aligned_cols=119 Identities=21% Similarity=0.317 Sum_probs=69.5
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
..++|.||||+||||+.++++..++ +.++..+..++.. -|=+..++...
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~--------------~~~~~~sg~~i~k---------------~~dl~~il~~l-- 99 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELG--------------VNFKITSGPAIEK---------------AGDLAAILTNL-- 99 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT----------------EEEEECCC--S---------------CHHHHHHHHT---
T ss_pred ceEEEECCCccchhHHHHHHHhccC--------------CCeEeccchhhhh---------------HHHHHHHHHhc--
Confidence 4578999999999999999887653 2222232222210 01122333322
Q ss_pred CCCCCceEEEEc--CCCChHhhhhhhhccCCCCc-eeeccc---ceeecC-CCCeEEEecCCCCccCcchhhceeeEE-e
Q psy4734 263 STTPDRKWIMFD--GPIDAVWIENMNTVLDDNKK-LCLING---EIIKMS-NTMNLIFECENLEFASPATVSRVGMIY-F 334 (367)
Q Consensus 263 ~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~-l~L~~g---e~i~l~-~~~~~ifE~~~l~~asPatvsRcg~v~-~ 334 (367)
.....++.| -.+...--|.|-+.+.|... +.+..| -.++++ +++.+|=-|+.....|+..-+|.|++. +
T Consensus 100 ---~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l 176 (233)
T PF05496_consen 100 ---KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRL 176 (233)
T ss_dssp ----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE-
T ss_pred ---CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecch
Confidence 234677778 23455666777777776554 344444 234443 568999999999999999999999984 4
Q ss_pred c
Q psy4734 335 E 335 (367)
Q Consensus 335 ~ 335 (367)
+
T Consensus 177 ~ 177 (233)
T PF05496_consen 177 E 177 (233)
T ss_dssp -
T ss_pred h
Confidence 4
No 37
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.0015 Score=68.08 Aligned_cols=145 Identities=19% Similarity=0.210 Sum_probs=79.0
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccc--cceecccccccccchHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQL--YGEFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l--~G~~d~~~~~W~dGil~~~~r~ 259 (367)
.|..+|.||+|+|||++.+.+++++.-.... ++.+..... +++.++.+.. +-.+|+.++ .|+ .-+|+
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-----~~~pC~~C~-~C~~i~~g~~~dv~eidaas~---~~v--d~ir~ 106 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-----DGEPCNECE-ICKAITNGSLMDVIEIDAASN---NGV--DEIRD 106 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-----CCCCCCccH-HHHHHhcCCCCCeEEeecccc---CCH--HHHHH
Confidence 4668899999999999999999988532210 001110000 0000100000 001233221 121 12222
Q ss_pred Hh---c--CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEe
Q psy4734 260 MA---V--STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYF 334 (367)
Q Consensus 260 ~~---~--~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~ 334 (367)
.. . ......+.+|+|. +|..-.+..|.+|. +| | ..|+++.||+-+++.....|+..|||..+.+
T Consensus 107 i~~~v~~~p~~~~~kViIIDE-~~~Lt~~a~naLLK-----tL---E--epp~~~ifIlatt~~~ki~~tI~SRc~~~~f 175 (559)
T PRK05563 107 IRDKVKYAPSEAKYKVYIIDE-VHMLSTGAFNALLK-----TL---E--EPPAHVIFILATTEPHKIPATILSRCQRFDF 175 (559)
T ss_pred HHHHHhhCcccCCeEEEEEEC-cccCCHHHHHHHHH-----Hh---c--CCCCCeEEEEEeCChhhCcHHHHhHheEEec
Confidence 21 1 1234679999994 55555556666542 11 1 1266788899888888888888999999988
Q ss_pred cccCCchHHHHHHHHHH
Q psy4734 335 ELKCISWTTFFLSYQNE 351 (367)
Q Consensus 335 ~~~~~~~~~~~~swl~~ 351 (367)
.+-. ..-+..||..
T Consensus 176 ~~~~---~~ei~~~L~~ 189 (559)
T PRK05563 176 KRIS---VEDIVERLKY 189 (559)
T ss_pred CCCC---HHHHHHHHHH
Confidence 6543 2334445543
No 38
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.95 E-value=0.0028 Score=61.58 Aligned_cols=120 Identities=17% Similarity=0.239 Sum_probs=70.5
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
..++|.||+|+|||++.+.++..++. .+ ..++..... ..|.+..+++..
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~------------~~--~~~~~~~~~---------------~~~~l~~~l~~l-- 100 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGV------------NI--RITSGPALE---------------KPGDLAAILTNL-- 100 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCC------------Ce--EEEeccccc---------------ChHHHHHHHHhc--
Confidence 45788999999999999988876531 11 111111010 012344444433
Q ss_pred CCCCCceEEEEc--CCCChHhhhhhhhccCCCCce-eecccc-----eeecCCCCeEEEecCCCCccCcchhhceee-EE
Q psy4734 263 STTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKL-CLINGE-----IIKMSNTMNLIFECENLEFASPATVSRVGM-IY 333 (367)
Q Consensus 263 ~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l-~L~~ge-----~i~l~~~~~~ifE~~~l~~asPatvsRcg~-v~ 333 (367)
.....+++| ..+...--|.+.+.+++.... .+.+|. ++.++ .+.+|.-++.....+|+..||||+ +.
T Consensus 101 ---~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~~~l~~~L~sRf~~~~~ 176 (328)
T PRK00080 101 ---EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRAGLLTSPLRDRFGIVQR 176 (328)
T ss_pred ---ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCcccCCHHHHHhcCeeee
Confidence 234688888 223344455666666665433 233332 22334 477888888888899999999986 45
Q ss_pred eccc
Q psy4734 334 FELK 337 (367)
Q Consensus 334 ~~~~ 337 (367)
+++-
T Consensus 177 l~~~ 180 (328)
T PRK00080 177 LEFY 180 (328)
T ss_pred cCCC
Confidence 6543
No 39
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.95 E-value=0.0034 Score=60.43 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=64.9
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
+.+++.||+|+|||++.+.++..++ ..+..+|+.. . . .+.+. ..+.+...
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~--------------~~~~~i~~~~-~-------------~-~~~i~-~~l~~~~~ 93 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVG--------------AEVLFVNGSD-C-------------R-IDFVR-NRLTRFAS 93 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhC--------------ccceEeccCc-c-------------c-HHHHH-HHHHHHHH
Confidence 4455589999999999998876541 0123345542 1 0 11111 11111111
Q ss_pred C--CCCCceEEEEcCCCChH----hhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecc
Q psy4734 263 S--TTPDRKWIMFDGPIDAV----WIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 336 (367)
Q Consensus 263 ~--~~~~~~wivfDG~~d~~----wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~ 336 (367)
. .....+-+|+|. +|.. .-+.|.+.++. .+.++++|+-+++.....|+..|||..+.+..
T Consensus 94 ~~~~~~~~~vliiDe-~d~l~~~~~~~~L~~~le~-------------~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~ 159 (316)
T PHA02544 94 TVSLTGGGKVIIIDE-FDRLGLADAQRHLRSFMEA-------------YSKNCSFIITANNKNGIIEPLRSRCRVIDFGV 159 (316)
T ss_pred hhcccCCCeEEEEEC-cccccCHHHHHHHHHHHHh-------------cCCCceEEEEcCChhhchHHHHhhceEEEeCC
Confidence 1 113468899994 3322 33444444332 24567889988888889999999999998843
No 40
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.0011 Score=68.58 Aligned_cols=138 Identities=20% Similarity=0.184 Sum_probs=75.2
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc---cccccceecccccccccchHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT---MGQLYGEFDSASHEWRDGILAKTFR 258 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t---~~~l~G~~d~~~~~W~dGil~~~~r 258 (367)
.|.++|.||+|+||||+.+.+++++.--.... ..+.... -.+..+. ..+++ .+|..+....|-+ -.++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-----~~pcg~C-~~C~~i~~~~~~d~~-ei~~~~~~~vd~i-r~l~~ 109 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNCETGVT-----ATPCGVC-SACLEIDSGRFVDLI-EVDAASNTQVDAM-RELLD 109 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----CCCCCCC-HHHHHHhcCCCCcee-EeeccccCCHHHH-HHHHH
Confidence 46788999999999999999999885211000 0000000 0000000 01111 1222221111111 12222
Q ss_pred HHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEeccc
Q psy4734 259 EMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 337 (367)
Q Consensus 259 ~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~ 337 (367)
.+... ....++-+|+| ++|..-.+..|.+|.- | | ..|+++.||+-+++....-|...|||-.+.+.+-
T Consensus 110 ~~~~~p~~~~~kVvIID-Ead~ls~~a~naLLK~-----L---E--epp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l 178 (527)
T PRK14969 110 NAQYAPTRGRFKVYIID-EVHMLSKSAFNAMLKT-----L---E--EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178 (527)
T ss_pred HHhhCcccCCceEEEEc-CcccCCHHHHHHHHHH-----H---h--CCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCC
Confidence 22222 23456889999 4565555666655411 1 1 1357888999999988888777999999999865
Q ss_pred C
Q psy4734 338 C 338 (367)
Q Consensus 338 ~ 338 (367)
.
T Consensus 179 ~ 179 (527)
T PRK14969 179 P 179 (527)
T ss_pred C
Confidence 4
No 41
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.00098 Score=69.87 Aligned_cols=135 Identities=20% Similarity=0.232 Sum_probs=72.1
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccc--eecccccccccchHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYG--EFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G--~~d~~~~~W~dGil~~~~r~ 259 (367)
.|.++|.||+|+||||+.++++++++-..... ..+... .-+++.+..+.... .+|..++ .|+ .-+|+
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~-----~~pCg~-C~sC~~I~~g~hpDviEIDAAs~---~~V--ddIRe 105 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCETGVT-----STPCEV-CATCKAVNEGRFIDLIEIDAASR---TKV--EDTRE 105 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC-----CCCCcc-CHHHHHHhcCCCCceEEeccccc---CCH--HHHHH
Confidence 47789999999999999999999885321100 000000 00001111110000 0122211 121 11222
Q ss_pred Hhc-----CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEe
Q psy4734 260 MAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYF 334 (367)
Q Consensus 260 ~~~-----~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~ 334 (367)
... ......+-+|+| .+|..-.+..|.+|. +| | ..++++.||+-+++.....|..+|||..+.+
T Consensus 106 li~~~~y~P~~gk~KV~IID-EVh~LS~~A~NALLK-----tL---E--EPP~~v~FILaTtd~~kIp~TIlSRCq~feF 174 (702)
T PRK14960 106 LLDNVPYAPTQGRFKVYLID-EVHMLSTHSFNALLK-----TL---E--EPPEHVKFLFATTDPQKLPITVISRCLQFTL 174 (702)
T ss_pred HHHHHhhhhhcCCcEEEEEe-chHhcCHHHHHHHHH-----HH---h--cCCCCcEEEEEECChHhhhHHHHHhhheeec
Confidence 211 122457899999 444433344444331 11 1 1356788999999988887777899999999
Q ss_pred cccC
Q psy4734 335 ELKC 338 (367)
Q Consensus 335 ~~~~ 338 (367)
.+-.
T Consensus 175 kpLs 178 (702)
T PRK14960 175 RPLA 178 (702)
T ss_pred cCCC
Confidence 8654
No 42
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.91 E-value=0.00019 Score=63.17 Aligned_cols=121 Identities=14% Similarity=0.216 Sum_probs=76.3
Q ss_pred hhHHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceecc---cc
Q psy4734 173 PHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDS---AS 245 (367)
Q Consensus 173 ~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~---~~ 245 (367)
..+.+.......|++.|++|+||+.+.+.+.. ...+. .-....+|+.+++ ..+|||.... ..
T Consensus 13 ~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~----~s~r~-------~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~ 81 (168)
T PF00158_consen 13 EQAKRAASSDLPVLITGETGTGKELLARAIHN----NSPRK-------NGPFISVNCAALPEELLESELFGHEKGAFTGA 81 (168)
T ss_dssp HHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH----CSTTT-------TS-EEEEETTTS-HHHHHHHHHEBCSSSSTTT
T ss_pred HHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH----hhhcc-------cCCeEEEehhhhhcchhhhhhhcccccccccc
Confidence 34556666778899999999999999777654 22111 1134568888886 4578997532 12
Q ss_pred cccccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecC
Q psy4734 246 HEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 316 (367)
Q Consensus 246 ~~W~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~ 316 (367)
...+.|.+..+= .--+++| +.+.+..=..|-.+|++.....+.+.+.+ +-++|+|+-|+
T Consensus 82 ~~~~~G~l~~A~----------~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~--~~~~RiI~st~ 142 (168)
T PF00158_consen 82 RSDKKGLLEQAN----------GGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPV--PVDVRIIASTS 142 (168)
T ss_dssp SSEBEHHHHHTT----------TSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEE--E--EEEEEEES
T ss_pred ccccCCceeecc----------ceEEeecchhhhHHHHHHHHHHHHhhchhccccccccc--cccceEEeecC
Confidence 334556653322 2467888 45677777888888888877777655544 45899998764
No 43
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.90 E-value=0.0011 Score=62.35 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.4
Q ss_pred hheeccccCCCchhhHHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
.++|.||||+|||++.+.+++.+..+
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999887544
No 44
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.88 E-value=0.0075 Score=62.32 Aligned_cols=144 Identities=19% Similarity=0.202 Sum_probs=78.6
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC---ccccccceecccccccccchHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI---TMGQLYGEFDSASHEWRDGILAKTFR 258 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~---t~~~l~G~~d~~~~~W~dGil~~~~r 258 (367)
.|..+|.||+|+|||++.+.+++++.--.... ..+... .-++..+ ...+++ .+|..+. -|+ .-+|
T Consensus 36 ~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~-----~~pC~~-C~~C~~~~~~~h~dv~-eldaas~---~gI--d~IR 103 (535)
T PRK08451 36 AHAYLFSGLRGSGKTSSARIFARALVCEQGPS-----STPCDT-CIQCQSALENRHIDII-EMDAASN---RGI--DDIR 103 (535)
T ss_pred CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCC-----CCCCcc-cHHHHHHhhcCCCeEE-Eeccccc---cCH--HHHH
Confidence 35568999999999999999999874211100 000000 0000000 000000 1111110 011 2334
Q ss_pred HHhcC-----CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEE
Q psy4734 259 EMAVS-----TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIY 333 (367)
Q Consensus 259 ~~~~~-----~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~ 333 (367)
+.... .....+-+|+|. +|..--+..|.+|. .=| ..|+++.|||-+.+....-|+..|||-.++
T Consensus 104 elie~~~~~P~~~~~KVvIIDE-ad~Lt~~A~NALLK--------~LE--Epp~~t~FIL~ttd~~kL~~tI~SRc~~~~ 172 (535)
T PRK08451 104 ELIEQTKYKPSMARFKIFIIDE-VHMLTKEAFNALLK--------TLE--EPPSYVKFILATTDPLKLPATILSRTQHFR 172 (535)
T ss_pred HHHHHHhhCcccCCeEEEEEEC-cccCCHHHHHHHHH--------HHh--hcCCceEEEEEECChhhCchHHHhhceeEE
Confidence 43321 224578999995 45555555555431 111 136788899999898888899999999999
Q ss_pred ecccCCchHHHHHHHHHH
Q psy4734 334 FELKCISWTTFFLSYQNE 351 (367)
Q Consensus 334 ~~~~~~~~~~~~~swl~~ 351 (367)
+.+-. ..-+..|+..
T Consensus 173 F~~Ls---~~ei~~~L~~ 187 (535)
T PRK08451 173 FKQIP---QNSIISHLKT 187 (535)
T ss_pred cCCCC---HHHHHHHHHH
Confidence 98765 2445556543
No 45
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.86 E-value=0.002 Score=69.84 Aligned_cols=131 Identities=16% Similarity=0.210 Sum_probs=71.8
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC-ccccccceecccccccc---cchHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGEFDSASHEWR---DGILAKTFRE 259 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~-t~~~l~G~~d~~~~~W~---dGil~~~~r~ 259 (367)
.++|+||||+|||++.+.++.++.. ....++.... +..++.|.. ..|. .|-+...+++
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~--------------~~~~i~~~~~~~~~~i~g~~----~~~~g~~~g~i~~~l~~ 410 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNR--------------KFVRFSLGGVRDEAEIRGHR----RTYVGAMPGRIIQGLKK 410 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC--------------CeEEEeCCCcccHHHHcCCC----CceeCCCCchHHHHHHH
Confidence 4788999999999999999988742 1222322221 233343321 1222 3334444444
Q ss_pred HhcCCCCCceEEEEcCCCChH-------hhhhhhhccCC--CCce-eecccceeecCCCCeEEEecCCCCccCcchhhce
Q psy4734 260 MAVSTTPDRKWIMFDGPIDAV-------WIENMNTVLDD--NKKL-CLINGEIIKMSNTMNLIFECENLEFASPATVSRV 329 (367)
Q Consensus 260 ~~~~~~~~~~wivfDG~~d~~-------wie~lnsvldd--n~~l-~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRc 329 (367)
+. .....|++| .+|.. -...|-.+||+ +..+ .---+..+.++ ++-||+=+..+....|+..+||
T Consensus 411 ~~----~~~~villD-Eidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s-~v~~I~TtN~~~~i~~~L~~R~ 484 (775)
T TIGR00763 411 AK----TKNPLFLLD-EIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLS-KVIFIATANSIDTIPRPLLDRM 484 (775)
T ss_pred hC----cCCCEEEEe-chhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccC-CEEEEEecCCchhCCHHHhCCe
Confidence 32 122378888 33322 12445566664 2211 11112223333 4546665556778899999999
Q ss_pred eeEEecccC
Q psy4734 330 GMIYFELKC 338 (367)
Q Consensus 330 g~v~~~~~~ 338 (367)
-+|.+.+-.
T Consensus 485 ~vi~~~~~~ 493 (775)
T TIGR00763 485 EVIELSGYT 493 (775)
T ss_pred eEEecCCCC
Confidence 998887643
No 46
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.0007 Score=72.99 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=75.1
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccc----cceecccccccccch--HHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQL----YGEFDSASHEWRDGI--LAK 255 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l----~G~~d~~~~~W~dGi--l~~ 255 (367)
.|..+|.||+|+||||+.+++++.+.--.... ..++. .-..|....+. +-.+|..+ ..|+ +-.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~-----~~pCg---~C~sC~~i~~g~~~DviEidAas---~~kVDdIRe 106 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVT-----ATPCG---VCSSCVEIAQGRFVDLIEVDAAS---RTKVDDTRE 106 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCccCCC-----CCCCC---CchHHHHHhcCCCceEEEecccc---ccCHHHHHH
Confidence 46678999999999999999999885321100 00000 00000000000 01122221 1121 111
Q ss_pred HHHHHhc-CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEe
Q psy4734 256 TFREMAV-STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYF 334 (367)
Q Consensus 256 ~~r~~~~-~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~ 334 (367)
++..... ......+-+|+| .+|..-.+.+|.+|- + -| ..|.+++||+=+++.....|+.+|||-.+.+
T Consensus 107 Lie~v~~~P~~gk~KViIID-EAh~LT~eAqNALLK---t-----LE--EPP~~vrFILaTTe~~kLl~TIlSRCq~f~f 175 (944)
T PRK14949 107 LLDNVQYRPSRGRFKVYLID-EVHMLSRSSFNALLK---T-----LE--EPPEHVKFLLATTDPQKLPVTVLSRCLQFNL 175 (944)
T ss_pred HHHHHHhhhhcCCcEEEEEe-chHhcCHHHHHHHHH---H-----Hh--ccCCCeEEEEECCCchhchHHHHHhheEEeC
Confidence 2211111 123467899999 666655666666531 0 01 1366888999999999998888999999998
Q ss_pred cccC
Q psy4734 335 ELKC 338 (367)
Q Consensus 335 ~~~~ 338 (367)
.+-.
T Consensus 176 kpLs 179 (944)
T PRK14949 176 KSLT 179 (944)
T ss_pred CCCC
Confidence 8753
No 47
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.80 E-value=0.0063 Score=66.55 Aligned_cols=150 Identities=19% Similarity=0.164 Sum_probs=88.8
Q ss_pred heeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEe--CCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKII--NPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~i--npka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
++|.||+|+|||.+.+.|++.+-.- ...+....+ +....+...|+|..-.--+.=..|.++..+|+
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~---------~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~--- 666 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGG---------EQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR--- 666 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCC---------CcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh---
Confidence 6788999999999999998886311 111211111 11223444555531000011146888888875
Q ss_pred CCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCC----------------------
Q psy4734 263 STTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL---------------------- 318 (367)
Q Consensus 263 ~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l---------------------- 318 (367)
.+..-|+|| ...++.-.+.|-.++|+. .++-+.|..+.+.+.. +|+ |+|+
T Consensus 667 ---~p~svvllDEieka~~~v~~~Llq~ld~g-~l~d~~Gr~vd~~n~i-iI~-TSNlg~~~~~~~~~~~~~~~~~~~~~ 740 (852)
T TIGR03345 667 ---KPYSVVLLDEVEKAHPDVLELFYQVFDKG-VMEDGEGREIDFKNTV-ILL-TSNAGSDLIMALCADPETAPDPEALL 740 (852)
T ss_pred ---CCCcEEEEechhhcCHHHHHHHHHHhhcc-eeecCCCcEEeccccE-EEE-eCCCchHHHHHhccCcccCcchHHHH
Confidence 345789999 445666666666777764 5677788888877533 333 2332
Q ss_pred --------CccCcchhhceeeEEecccCC-chHHHHHHHHHHh
Q psy4734 319 --------EFASPATVSRVGMIYFELKCI-SWTTFFLSYQNEL 352 (367)
Q Consensus 319 --------~~asPatvsRcg~v~~~~~~~-~~~~~~~swl~~~ 352 (367)
..-.|+.++||-+|.+.|-.- .-..++..-++.+
T Consensus 741 ~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 741 EALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred HHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 125688999999888876532 1334444444443
No 48
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.80 E-value=0.0029 Score=61.56 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=84.3
Q ss_pred HhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCC-CCccccccceecc-------ccccccc
Q psy4734 179 FEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK-SITMGQLYGEFDS-------ASHEWRD 250 (367)
Q Consensus 179 ~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpk-a~t~~~l~G~~d~-------~~~~W~d 250 (367)
+.....+++.|+||+|||++.+.++++++. ....++.. .++-.+++|.++. ....|.+
T Consensus 40 ~~~~~~vll~G~PG~gKT~la~~lA~~l~~--------------~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~ 105 (329)
T COG0714 40 LLAGGHVLLEGPPGVGKTLLARALARALGL--------------PFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVP 105 (329)
T ss_pred HHcCCCEEEECCCCccHHHHHHHHHHHhCC--------------CeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEec
Confidence 344555889999999999999999998851 12233333 3456778887633 2346999
Q ss_pred chHHHHHHHHhcCCCCCceEEEEcCCCChHhhh---hhhhccCCCCceeecccce-eecCCCCeEEEecCC------CCc
Q psy4734 251 GILAKTFREMAVSTTPDRKWIMFDGPIDAVWIE---NMNTVLDDNKKLCLINGEI-IKMSNTMNLIFECEN------LEF 320 (367)
Q Consensus 251 Gil~~~~r~~~~~~~~~~~wivfDG~~d~~wie---~lnsvlddn~~l~L~~ge~-i~l~~~~~~ifE~~~------l~~ 320 (367)
|.+...++ ..+++| .++..-.+ .|..+|++...--- |.+ +++++.+ +++-|+| -..
T Consensus 106 gpl~~~~~----------~ill~D-EInra~p~~q~aLl~~l~e~~vtv~--~~~~~~~~~~f-~viaT~Np~e~~g~~~ 171 (329)
T COG0714 106 GPLFAAVR----------VILLLD-EINRAPPEVQNALLEALEERQVTVP--GLTTIRLPPPF-IVIATQNPGEYEGTYP 171 (329)
T ss_pred CCcccccc----------eEEEEe-ccccCCHHHHHHHHHHHhCcEEEEC--CcCCcCCCCCC-EEEEccCccccCCCcC
Confidence 98766654 467778 55444444 44455555433332 334 7777776 5556655 333
Q ss_pred cCcchhhce-eeEEeccc
Q psy4734 321 ASPATVSRV-GMIYFELK 337 (367)
Q Consensus 321 asPatvsRc-g~v~~~~~ 337 (367)
...|...|| --+|++--
T Consensus 172 l~eA~ldRf~~~~~v~yp 189 (329)
T COG0714 172 LPEALLDRFLLRIYVDYP 189 (329)
T ss_pred CCHHHHhhEEEEEecCCC
Confidence 566999999 77777744
No 49
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0034 Score=67.54 Aligned_cols=145 Identities=18% Similarity=0.210 Sum_probs=83.4
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCC----CCccccccceecccccccccchHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK----SITMGQLYGEFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpk----a~t~~~l~G~~d~~~~~W~dGil~~~~r~ 259 (367)
.++|+||+|+|||++.+.|++.++. + ...++.. ..+...|+|.-..-.+....|.++..+|+
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~------------~--~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~ 555 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGI------------E--LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK 555 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC------------C--cEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHh
Confidence 4788999999999999999887731 1 1122222 23457788742111122356788888875
Q ss_pred HhcCCCCCceEEEEcCCCC---hHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCC-----------------
Q psy4734 260 MAVSTTPDRKWIMFDGPID---AVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE----------------- 319 (367)
Q Consensus 260 ~~~~~~~~~~wivfDG~~d---~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~----------------- 319 (367)
. ...-++|| .+| +.-...|-.+||+ ..++-..|..+.+.+. +++=|+|+.
T Consensus 556 ~------p~sVlllD-Eieka~~~v~~~LLq~ld~-G~ltd~~g~~vd~rn~--iiI~TsN~g~~~~~~~~~g~~~~~~~ 625 (758)
T PRK11034 556 H------PHAVLLLD-EIEKAHPDVFNLLLQVMDN-GTLTDNNGRKADFRNV--VLVMTTNAGVRETERKSIGLIHQDNS 625 (758)
T ss_pred C------CCcEEEec-cHhhhhHHHHHHHHHHHhc-CeeecCCCceecCCCc--EEEEeCCcCHHHHhhcccCcccchhh
Confidence 3 34689999 444 4444445555654 5556566766655433 333344422
Q ss_pred ---------ccCcchhhcee-eEEecccCC-chHHHHHHHHHHh
Q psy4734 320 ---------FASPATVSRVG-MIYFELKCI-SWTTFFLSYQNEL 352 (367)
Q Consensus 320 ---------~asPatvsRcg-~v~~~~~~~-~~~~~~~swl~~~ 352 (367)
...|..+.|+- +|.+.+-+- .-..++...+..+
T Consensus 626 ~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~ 669 (758)
T PRK11034 626 TDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_pred HHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 24588888885 666655431 1344444444433
No 50
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.0069 Score=63.34 Aligned_cols=149 Identities=20% Similarity=0.171 Sum_probs=79.7
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEE----EEeCCCCCccccccceecccccccccchHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGY----KIINPKSITMGQLYGEFDSASHEWRDGILAKTF 257 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~----~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~ 257 (367)
.|.++|.||+|+||||+.+.+++++.-..... ..+... ..+++..-...+++ .+|..+..=.|- +-.+.
T Consensus 35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-----~~pCg~C~~C~~i~~~~~~~~dvi-eidaas~~gvd~-iRel~ 107 (584)
T PRK14952 35 NHAYLFSGPRGCGKTSSARILARSLNCAQGPT-----ATPCGVCESCVALAPNGPGSIDVV-ELDAASHGGVDD-TRELR 107 (584)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCC-----CCcccccHHHHHhhcccCCCceEE-EeccccccCHHH-HHHHH
Confidence 45678999999999999999999886321100 000000 00111000000010 112211100010 11111
Q ss_pred HHHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecc
Q psy4734 258 REMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 336 (367)
Q Consensus 258 r~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~ 336 (367)
..+... .....+-+|+| .+|..-.+..|.+|. .=| ..|+++.|||-+++....-|+..|||-.+.+.+
T Consensus 108 ~~~~~~P~~~~~KVvIID-Eah~Lt~~A~NALLK--------~LE--Epp~~~~fIL~tte~~kll~TI~SRc~~~~F~~ 176 (584)
T PRK14952 108 DRAFYAPAQSRYRIFIVD-EAHMVTTAGFNALLK--------IVE--EPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRL 176 (584)
T ss_pred HHHHhhhhcCCceEEEEE-CCCcCCHHHHHHHHH--------HHh--cCCCCeEEEEEeCChHhhHHHHHHhceEEEeeC
Confidence 111111 23467899999 355444556666531 111 256688899999999888888899999999986
Q ss_pred cCCchHHHHHHHHHH
Q psy4734 337 KCISWTTFFLSYQNE 351 (367)
Q Consensus 337 ~~~~~~~~~~swl~~ 351 (367)
-.- .-+..||..
T Consensus 177 l~~---~~i~~~L~~ 188 (584)
T PRK14952 177 LPP---RTMRALIAR 188 (584)
T ss_pred CCH---HHHHHHHHH
Confidence 542 345566654
No 51
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.77 E-value=0.0021 Score=67.92 Aligned_cols=134 Identities=23% Similarity=0.257 Sum_probs=72.6
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccc--eecccccccccchHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYG--EFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G--~~d~~~~~W~dGil~~~~r~ 259 (367)
.|.++|.||+|+||||+.+.+++++.--.... ..+... .-.+..+..+.... .+|.. ...|+ ..+|+
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-----~~pCg~-C~sCr~i~~g~~~DvlEidaA---s~~gV--d~IRe 106 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCENAQH-----GEPCGV-CQSCTQIDAGRYVDLLEIDAA---SNTGI--DNIRE 106 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-----CCCCcc-cHHHHHHhccCccceEEEecc---ccCCH--HHHHH
Confidence 47789999999999999999999875321100 000000 00001111111111 12221 12232 22333
Q ss_pred Hhc----C-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEe
Q psy4734 260 MAV----S-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYF 334 (367)
Q Consensus 260 ~~~----~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~ 334 (367)
... . .....+.+|+|. +|..--+..|.+|. +| | ..+++++|||-+++.....|..+|||-.+.+
T Consensus 107 lle~a~~~P~~gk~KVIIIDE-ad~Ls~~A~NALLK-----tL---E--EPp~~v~fILaTtd~~kL~~TIrSRC~~f~f 175 (709)
T PRK08691 107 VLENAQYAPTAGKYKVYIIDE-VHMLSKSAFNAMLK-----TL---E--EPPEHVKFILATTDPHKVPVTVLSRCLQFVL 175 (709)
T ss_pred HHHHHHhhhhhCCcEEEEEEC-ccccCHHHHHHHHH-----HH---H--hCCCCcEEEEEeCCccccchHHHHHHhhhhc
Confidence 321 1 224578999994 44433344444331 00 1 1456888999999999988888999988776
Q ss_pred ccc
Q psy4734 335 ELK 337 (367)
Q Consensus 335 ~~~ 337 (367)
.+-
T Consensus 176 ~~L 178 (709)
T PRK08691 176 RNM 178 (709)
T ss_pred CCC
Confidence 544
No 52
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.0034 Score=64.64 Aligned_cols=138 Identities=17% Similarity=0.164 Sum_probs=74.7
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhcc---------ccccceeEEEEeCCCCCccccccceecccccccccch-
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA---------TMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI- 252 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~---------~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGi- 252 (367)
|.++|.||+|+||||+.+.+++++.-....... -.......+..+|+. . ..|+
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~--------------~---~~~vd 99 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAA--------------S---NNSVE 99 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccc--------------c---cCCHH
Confidence 556899999999999999999988532110000 000001111222221 0 0111
Q ss_pred HHHHHHHHhc--CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhcee
Q psy4734 253 LAKTFREMAV--STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG 330 (367)
Q Consensus 253 l~~~~r~~~~--~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg 330 (367)
-.+-+++... .....++.+|+|- +|..-.+.+|.++.. +. ..+++..+|+-+++.....|+..|||.
T Consensus 100 ~iR~l~~~~~~~p~~~~~kVVIIDE-ad~ls~~a~naLLk~-----LE-----ep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 100 DVRDLREKVLLAPLRGGRKVYILDE-AHMMSKSAFNALLKT-----LE-----EPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred HHHHHHHHHhhccccCCCeEEEEEC-ccccCHHHHHHHHHH-----HH-----hCCCCEEEEEEcCChhhCChHHhcceE
Confidence 0111122111 1234678999994 454434444444321 11 124566778888888888899999999
Q ss_pred eEEecccCCchHHHHHHHHHH
Q psy4734 331 MIYFELKCISWTTFFLSYQNE 351 (367)
Q Consensus 331 ~v~~~~~~~~~~~~~~swl~~ 351 (367)
.+.+.+-.- .-+..|+..
T Consensus 169 ~~~f~~ls~---~el~~~L~~ 186 (504)
T PRK14963 169 HFRFRRLTE---EEIAGKLRR 186 (504)
T ss_pred EEEecCCCH---HHHHHHHHH
Confidence 999986431 334445543
No 53
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.0056 Score=59.45 Aligned_cols=141 Identities=15% Similarity=0.137 Sum_probs=87.3
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhc----------cccccceeEEEEeCCCCCccccccceeccccccccc
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS----------ATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRD 250 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~----------~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~d 250 (367)
..|+.+|.||+|.||+++.+.+++++.-...... .-..+....++.+.|.. + .
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--------------~---~ 85 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--------------N---K 85 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--------------C---C
Confidence 3588999999999999999999988842111000 00001112223333310 0 1
Q ss_pred chHHHHHHHHh-----cCCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcch
Q psy4734 251 GILAKTFREMA-----VSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPAT 325 (367)
Q Consensus 251 Gil~~~~r~~~-----~~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPat 325 (367)
.+-..-+|+.. .......|.+|+| +.|..-.+.-|++|- +| | ..|++..||+-+++....-|..
T Consensus 86 ~I~id~iR~l~~~~~~~~~~g~~KV~iI~-~a~~m~~~AaNaLLK---tL-----E--EPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 86 DIGVDQVREINEKVSQHAQQGGNKVVYIQ-GAERLTEAAANALLK---TL-----E--EPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred CCCHHHHHHHHHHHhhccccCCceEEEEe-chhhhCHHHHHHHHH---Hh-----c--CCCCCeEEEEEECChHhCchHH
Confidence 12223344432 1234567899999 667666777777651 11 1 2467788899898999998988
Q ss_pred hhceeeEEecccCCchHHHHHHHHHHh
Q psy4734 326 VSRVGMIYFELKCISWTTFFLSYQNEL 352 (367)
Q Consensus 326 vsRcg~v~~~~~~~~~~~~~~swl~~~ 352 (367)
.|||-.+.+.+-.- .-+..||...
T Consensus 155 ~SRC~~~~~~~~~~---~~~~~~L~~~ 178 (325)
T PRK06871 155 YSRCQTWLIHPPEE---QQALDWLQAQ 178 (325)
T ss_pred HhhceEEeCCCCCH---HHHHHHHHHH
Confidence 99999999987642 4566677653
No 54
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=96.70 E-value=0.0042 Score=57.48 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=69.6
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 260 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~ 260 (367)
...|..+.||+|+|||++++.|++++++. .+++|+..- -....++++++.+
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~--------------~~vfnc~~~---------------~~~~~l~ril~G~ 81 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRF--------------VVVFNCSEQ---------------MDYQSLSRILKGL 81 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT----------------EEEEETTSS---------------S-HHHHHHHHHHH
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCe--------------EEEeccccc---------------ccHHHHHHHHHHH
Confidence 34556678999999999999999888654 234444321 2233567777766
Q ss_pred hcCCCCCceEEEEcCCCChHhhhhhhh-----------ccCCCCceeecccceeecCCCCeEEEecCCCCcc----Ccc-
Q psy4734 261 AVSTTPDRKWIMFDGPIDAVWIENMNT-----------VLDDNKKLCLINGEIIKMSNTMNLIFECENLEFA----SPA- 324 (367)
Q Consensus 261 ~~~~~~~~~wivfDG~~d~~wie~lns-----------vlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~a----sPa- 324 (367)
+.. --|.+|| +++..-.+.|.. +-...+..++ .|+.|+++++..++. |-+..++ =|.
T Consensus 82 ~~~----GaW~cfd-efnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFi-T~np~y~gr~~LP~n 154 (231)
T PF12774_consen 82 AQS----GAWLCFD-EFNRLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFI-TMNPGYAGRSELPEN 154 (231)
T ss_dssp HHH----T-EEEEE-TCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEE-EE-B-CCCC--S-HH
T ss_pred hhc----Cchhhhh-hhhhhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEE-eeccccCCcccCCHh
Confidence 554 3799999 444443333332 2234555555 588999999987665 3343222 232
Q ss_pred hhhceeeEEecccCCchHHHHHHHH
Q psy4734 325 TVSRVGMIYFELKCISWTTFFLSYQ 349 (367)
Q Consensus 325 tvsRcg~v~~~~~~~~~~~~~~swl 349 (367)
.-+-+--|.|...| ...+.+-+|
T Consensus 155 Lk~lFRpvam~~PD--~~~I~ei~L 177 (231)
T PF12774_consen 155 LKALFRPVAMMVPD--LSLIAEILL 177 (231)
T ss_dssp HCTTEEEEE--S----HHHHHHHHH
T ss_pred HHHHhheeEEeCCC--HHHHHHHHH
Confidence 22334455555444 445555555
No 55
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.0062 Score=59.03 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=87.2
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhc---------cccccceeEEEEeCCCCCccccccceecccccccccc
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS---------ATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG 251 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~---------~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dG 251 (367)
..|.++|.||.|.||+++...+++++.-...... ....+..-.++.+.|..- .. .
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~------------~~----~ 87 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE------------GK----S 87 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC------------CC----c
Confidence 4578999999999999999999988742211000 000111222333444210 00 0
Q ss_pred hHHHHHHHHh-----cCCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchh
Q psy4734 252 ILAKTFREMA-----VSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 326 (367)
Q Consensus 252 il~~~~r~~~-----~~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatv 326 (367)
|-..-+|+.. +....+.|.+|+| +.|..=.+.-|++|- +| | ..|++..||+-+++....-|..+
T Consensus 88 I~vdqiR~l~~~~~~~~~~~~~kV~iI~-~ae~m~~~AaNaLLK---tL-----E--EPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 88 ITVEQIRQCNRLAQESSQLNGYRLFVIE-PADAMNESASNALLK---TL-----E--EPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred CCHHHHHHHHHHHhhCcccCCceEEEec-chhhhCHHHHHHHHH---Hh-----c--CCCCCeEEEEEECChhhChHHHH
Confidence 1111223321 1234567999999 666666667777651 11 1 24667889999999999999999
Q ss_pred hceeeEEecccCCchHHHHHHHHHHh
Q psy4734 327 SRVGMIYFELKCISWTTFFLSYQNEL 352 (367)
Q Consensus 327 sRcg~v~~~~~~~~~~~~~~swl~~~ 352 (367)
|||-.+.+.+-. ...+..|+...
T Consensus 157 SRCq~~~~~~~~---~~~~~~~L~~~ 179 (319)
T PRK06090 157 SRCQQWVVTPPS---TAQAMQWLKGQ 179 (319)
T ss_pred hcceeEeCCCCC---HHHHHHHHHHc
Confidence 999999998654 35667777653
No 56
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.67 E-value=0.0069 Score=65.31 Aligned_cols=147 Identities=19% Similarity=0.221 Sum_probs=82.7
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEe--CCCCCccccccceeccccccc-ccchHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKII--NPKSITMGQLYGEFDSASHEW-RDGILAKTFREM 260 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~i--npka~t~~~l~G~~d~~~~~W-~dGil~~~~r~~ 260 (367)
.++|+||+|+|||++.+.|++.+.. ++....+ +....+...+.|.... -... ..|.++..+|+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~------------~~~~~d~se~~~~~~~~~lig~~~g-yvg~~~~~~l~~~~~~- 551 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGV------------HLERFDMSEYMEKHTVSRLIGAPPG-YVGFEQGGLLTEAVRK- 551 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcC------------CeEEEeCchhhhcccHHHHhcCCCC-CcccchhhHHHHHHHh-
Confidence 3678999999999999999987731 1111111 1222334445554210 0011 24677777774
Q ss_pred hcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCC-------------------
Q psy4734 261 AVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE------------------- 319 (367)
Q Consensus 261 ~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~------------------- 319 (367)
....-++|| ...++.-...|-.++|+ ..++-..|..+.+.+. +++-|+|+.
T Consensus 552 -----~p~~VvllDEieka~~~~~~~Ll~~ld~-g~~~d~~g~~vd~~~~--iii~Tsn~g~~~~~~~~~~f~~~~~~~~ 623 (731)
T TIGR02639 552 -----HPHCVLLLDEIEKAHPDIYNILLQVMDY-ATLTDNNGRKADFRNV--ILIMTSNAGASEMSKPPIGFGSENVESK 623 (731)
T ss_pred -----CCCeEEEEechhhcCHHHHHHHHHhhcc-CeeecCCCcccCCCCC--EEEECCCcchhhhhhccCCcchhhhHHH
Confidence 245899999 23455555566666665 4566667776666543 344455542
Q ss_pred -------ccCcchhhcee-eEEecccCC-chHHHHHHHHHHh
Q psy4734 320 -------FASPATVSRVG-MIYFELKCI-SWTTFFLSYQNEL 352 (367)
Q Consensus 320 -------~asPatvsRcg-~v~~~~~~~-~~~~~~~swl~~~ 352 (367)
...|..+.|.. +|.+.|-+- .-..++..-++.+
T Consensus 624 ~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l 665 (731)
T TIGR02639 624 SDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDEL 665 (731)
T ss_pred HHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHH
Confidence 24677888886 555555331 1334444444433
No 57
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.67 E-value=0.0047 Score=64.80 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=80.1
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhc--c-------------ccccceeEEEEeCCCCCccccccceecccc
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS--A-------------TMKEFKTGYKIINPKSITMGQLYGEFDSAS 245 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~--~-------------~~~~~~v~~~~inpka~t~~~l~G~~d~~~ 245 (367)
..|.++|.||+|+||||+.+.+++++.-...... + ...+....+..++|.+.
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~------------- 111 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASH------------- 111 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEeccccc-------------
Confidence 3578999999999999999999998853211000 0 00111122222333211
Q ss_pred cccccch--HHHHHHHHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccC
Q psy4734 246 HEWRDGI--LAKTFREMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFAS 322 (367)
Q Consensus 246 ~~W~dGi--l~~~~r~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~as 322 (367)
-|+ +-.++..+... -...+|-+|+| ++|..-.+..|.+|. +| | ..++++.|||-+++.....
T Consensus 112 ----~gvd~IReIie~~~~~P~~a~~KVvIID-Ead~Ls~~a~naLLK-----tL---E--ePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 112 ----TGVDDIREIIESVRYRPVSARYKVYIID-EVHMLSTAAFNALLK-----TL---E--EPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred ----CCHHHHHHHHHHHHhchhcCCcEEEEEE-ChHhCCHHHHHHHHH-----HH---H--hCCCCeEEEEEeCChhhhh
Confidence 111 11122222111 23457889999 455444445555431 11 1 2467888999999998888
Q ss_pred cchhhceeeEEecccCCchHHHHHHHHHHh
Q psy4734 323 PATVSRVGMIYFELKCISWTTFFLSYQNEL 352 (367)
Q Consensus 323 PatvsRcg~v~~~~~~~~~~~~~~swl~~~ 352 (367)
|...|||-.+.+.+-.- .-+..|+.+.
T Consensus 177 ~tI~SRcq~~~f~~l~~---~el~~~L~~i 203 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEA---DVLAAHLSRI 203 (598)
T ss_pred HHHHhheeEEEecCCCH---HHHHHHHHHH
Confidence 88899999988875431 3455566553
No 58
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.0026 Score=61.43 Aligned_cols=134 Identities=18% Similarity=0.174 Sum_probs=78.8
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 260 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~ 260 (367)
..|..+|.||+|+|||++.+.+++++.- .... ...-.++.+.|. -| . .+-..-+|+.
T Consensus 25 ~~ha~Lf~G~~G~Gk~~la~~~a~~l~c--~~~~----~~h~D~~~~~~~-------~~------~----~i~v~~ir~~ 81 (313)
T PRK05564 25 FSHAHIIVGEDGIGKSLLAKEIALKILG--KSQQ----REYVDIIEFKPI-------NK------K----SIGVDDIRNI 81 (313)
T ss_pred CCceEEeECCCCCCHHHHHHHHHHHHcC--CCCC----CCCCCeEEeccc-------cC------C----CCCHHHHHHH
Confidence 4467789999999999999999887732 1100 001111122221 00 0 0111223443
Q ss_pred hc-----CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEec
Q psy4734 261 AV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFE 335 (367)
Q Consensus 261 ~~-----~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~ 335 (367)
.. .-..++|.+|+|. +|..-.+.-|++|. +| | ..|++..+|+=+++...+-|+..|||-++++.
T Consensus 82 ~~~~~~~p~~~~~kv~iI~~-ad~m~~~a~naLLK-----~L---E--epp~~t~~il~~~~~~~ll~TI~SRc~~~~~~ 150 (313)
T PRK05564 82 IEEVNKKPYEGDKKVIIIYN-SEKMTEQAQNAFLK-----TI---E--EPPKGVFIILLCENLEQILDTIKSRCQIYKLN 150 (313)
T ss_pred HHHHhcCcccCCceEEEEec-hhhcCHHHHHHHHH-----Hh---c--CCCCCeEEEEEeCChHhCcHHHHhhceeeeCC
Confidence 32 2234678999995 44444445555541 11 1 24667888888888989999889999999997
Q ss_pred ccCCchHHHHHHHHHH
Q psy4734 336 LKCISWTTFFLSYQNE 351 (367)
Q Consensus 336 ~~~~~~~~~~~swl~~ 351 (367)
+-.- .-+..|+..
T Consensus 151 ~~~~---~~~~~~l~~ 163 (313)
T PRK05564 151 RLSK---EEIEKFISY 163 (313)
T ss_pred CcCH---HHHHHHHHH
Confidence 6431 334667654
No 59
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.0039 Score=60.63 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=81.0
Q ss_pred hhhhhheeccccCCCchhhHHHHHHHHHHHHhhhc-----------cccccceeEEEEeCCCCCccccccceeccccccc
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS-----------ATMKEFKTGYKIINPKSITMGQLYGEFDSASHEW 248 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~-----------~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W 248 (367)
...|+++|.||+|+|||++.+.+++++.-...... ....+..-.++.+.|..-. ...+..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~---------~~~g~~ 89 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE---------PENGRK 89 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc---------cccccc
Confidence 34577889999999999999999998742110000 0001112233344442200 000101
Q ss_pred ccchHHHHHHHHhc----CC-CCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCc
Q psy4734 249 RDGILAKTFREMAV----ST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP 323 (367)
Q Consensus 249 ~dGil~~~~r~~~~----~~-~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asP 323 (367)
...+-..-+|+... .. ...+|.++. -|.+..-.+.-|.++. +| |. .+++..+|+-+++...+.|
T Consensus 90 ~~~I~id~iR~l~~~~~~~p~~~~~kV~ii-Ep~~~Ld~~a~naLLk-----~L---Ee--p~~~~~~Ilvth~~~~ll~ 158 (325)
T PRK08699 90 LLQIKIDAVREIIDNVYLTSVRGGLRVILI-HPAESMNLQAANSLLK-----VL---EE--PPPQVVFLLVSHAADKVLP 158 (325)
T ss_pred CCCcCHHHHHHHHHHHhhCcccCCceEEEE-echhhCCHHHHHHHHH-----HH---Hh--CcCCCEEEEEeCChHhChH
Confidence 11122223444322 22 234566655 4765555555554432 00 11 1345778998888888888
Q ss_pred chhhceeeEEecccCCchHHHHHHHHHH
Q psy4734 324 ATVSRVGMIYFELKCISWTTFFLSYQNE 351 (367)
Q Consensus 324 atvsRcg~v~~~~~~~~~~~~~~swl~~ 351 (367)
...|||-.+.+.+-.- .-+..||..
T Consensus 159 ti~SRc~~~~~~~~~~---~~~~~~L~~ 183 (325)
T PRK08699 159 TIKSRCRKMVLPAPSH---EEALAYLRE 183 (325)
T ss_pred HHHHHhhhhcCCCCCH---HHHHHHHHh
Confidence 8899999999987542 456677754
No 60
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.0019 Score=63.49 Aligned_cols=150 Identities=18% Similarity=0.178 Sum_probs=83.2
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCC--CC--------cccccc---ceecccccc
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK--SI--------TMGQLY---GEFDSASHE 247 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpk--a~--------t~~~l~---G~~d~~~~~ 247 (367)
..|.++|.||+|+||||+.+.+++.+..-..... .+. ...+|- +. +..+++ ...|+.++.
T Consensus 44 l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~-----~~~--~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~ 116 (351)
T PRK09112 44 LHHALLFEGPEGIGKATLAFHLANHILSHPDPAE-----APE--TLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGK 116 (351)
T ss_pred CCeeEeeECCCCCCHHHHHHHHHHHHcCCCcccc-----Ccc--ccCCCCCCCHHHHHHHcCCCCCEEEeeccccccccc
Confidence 3467999999999999999999887743110000 000 000110 10 111111 111222222
Q ss_pred cccchHHHHHHHHhc-----CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccC
Q psy4734 248 WRDGILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFAS 322 (367)
Q Consensus 248 W~dGil~~~~r~~~~-----~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~as 322 (367)
...++-..-+|+... ......+.+|+| ++|..-.+..|.+|. +=|. .+.+..+|+=+++.....
T Consensus 117 ~~~~I~vd~iR~l~~~l~~~~~~g~~rVviID-eAd~l~~~aanaLLk--------~LEE--pp~~~~fiLit~~~~~ll 185 (351)
T PRK09112 117 FKTAITVDEIRRVGHFLSQTSGDGNWRIVIID-PADDMNRNAANAILK--------TLEE--PPARALFILISHSSGRLL 185 (351)
T ss_pred ccccCCHHHHHHHHHHhhhccccCCceEEEEE-chhhcCHHHHHHHHH--------HHhc--CCCCceEEEEECChhhcc
Confidence 233343444555432 233467889999 666555555565431 1122 244566677777777888
Q ss_pred cchhhceeeEEecccCCchHHHHHHHHHH
Q psy4734 323 PATVSRVGMIYFELKCISWTTFFLSYQNE 351 (367)
Q Consensus 323 PatvsRcg~v~~~~~~~~~~~~~~swl~~ 351 (367)
|...|||-.+.+.+-.- .-+..||..
T Consensus 186 ptIrSRc~~i~l~pl~~---~~~~~~L~~ 211 (351)
T PRK09112 186 PTIRSRCQPISLKPLDD---DELKKALSH 211 (351)
T ss_pred HHHHhhccEEEecCCCH---HHHHHHHHH
Confidence 99999999999987542 445667665
No 61
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.0043 Score=66.01 Aligned_cols=137 Identities=18% Similarity=0.229 Sum_probs=74.0
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccch--HHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI--LAKTFR 258 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGi--l~~~~r 258 (367)
..|..+|.||+|+|||++++.+++++.-..... ...+.... ........+ ++ .+|..+ ..|+ +-.+..
T Consensus 39 l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~----~~~pC~~C-~~~~~~~~D-vi-eidaas---n~~vd~IReLie 108 (725)
T PRK07133 39 ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD----LLEPCQEC-IENVNNSLD-II-EMDAAS---NNGVDEIRELIE 108 (725)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC----CCCchhHH-HHhhcCCCc-EE-EEeccc---cCCHHHHHHHHH
Confidence 356788999999999999999999875321100 00000000 000000000 00 112211 1121 122222
Q ss_pred HHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEeccc
Q psy4734 259 EMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 337 (367)
Q Consensus 259 ~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~ 337 (367)
.+... ....++-+|+|. +|..-.+..|.+|.- | | ..|+++.+||-+++....-|+..|||..+.+.+-
T Consensus 109 ~~~~~P~~g~~KV~IIDE-a~~LT~~A~NALLKt-----L---E--EPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L 177 (725)
T PRK07133 109 NVKNLPTQSKYKIYIIDE-VHMLSKSAFNALLKT-----L---E--EPPKHVIFILATTEVHKIPLTILSRVQRFNFRRI 177 (725)
T ss_pred HHHhchhcCCCEEEEEEC-hhhCCHHHHHHHHHH-----h---h--cCCCceEEEEEcCChhhhhHHHHhhceeEEccCC
Confidence 22222 235678899994 444444555555311 0 1 1366788899998888888888999999998765
Q ss_pred C
Q psy4734 338 C 338 (367)
Q Consensus 338 ~ 338 (367)
.
T Consensus 178 ~ 178 (725)
T PRK07133 178 S 178 (725)
T ss_pred C
Confidence 3
No 62
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.0086 Score=58.04 Aligned_cols=144 Identities=20% Similarity=0.225 Sum_probs=88.8
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhcc---------ccccceeEEEEe--CCCCCccccccceecccccccc
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA---------TMKEFKTGYKII--NPKSITMGQLYGEFDSASHEWR 249 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~---------~~~~~~v~~~~i--npka~t~~~l~G~~d~~~~~W~ 249 (367)
..|.++|.||+|.||+++...+++++. +..... ...+..-.++.+ .|..-. ..=.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~Ll--C~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~------------~k~~ 90 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVL--ASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTG------------DKLR 90 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHh--CCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccc------------cccc
Confidence 457899999999999999999998873 221100 000111122222 221100 0000
Q ss_pred cchHHHHHHHHhc-----CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcc
Q psy4734 250 DGILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPA 324 (367)
Q Consensus 250 dGil~~~~r~~~~-----~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPa 324 (367)
-.|-..-+|+... ......|.+|+| +.|..-.+.-|++|- +| | .-|++..||.-+++....-|.
T Consensus 91 ~~I~idqIR~l~~~~~~~p~~g~~kV~iI~-~ae~m~~~AaNaLLK---tL-----E--EPp~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 91 TEIVIEQVREISQKLALTPQYGIAQVVIVD-PADAINRAACNALLK---TL-----E--EPSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred ccccHHHHHHHHHHHhhCcccCCcEEEEec-cHhhhCHHHHHHHHH---Hh-----h--CCCCCCeEEEEECChhhCchH
Confidence 1133445666543 223467999999 777777777777752 11 1 235677788889999999898
Q ss_pred hhhceeeEEecccCCchHHHHHHHHHHh
Q psy4734 325 TVSRVGMIYFELKCISWTTFFLSYQNEL 352 (367)
Q Consensus 325 tvsRcg~v~~~~~~~~~~~~~~swl~~~ 352 (367)
..|||-.+.+.+-.- .-+..||...
T Consensus 160 IrSRCq~i~~~~~~~---~~~~~~L~~~ 184 (319)
T PRK08769 160 IRSRCQRLEFKLPPA---HEALAWLLAQ 184 (319)
T ss_pred HHhhheEeeCCCcCH---HHHHHHHHHc
Confidence 899999999986432 4566787653
No 63
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.52 E-value=0.0043 Score=64.68 Aligned_cols=135 Identities=19% Similarity=0.213 Sum_probs=69.5
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEE----EeCCCCCccccccceecccccccccch--HHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYK----IINPKSITMGQLYGEFDSASHEWRDGI--LAK 255 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~----~inpka~t~~~l~G~~d~~~~~W~dGi--l~~ 255 (367)
.|+++|.||+|+||||+++.+++++.-...... .+.... .+... +..+++ .+|+. ..-|+ +-.
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~-----~~Cg~C~sCr~i~~~--~h~Dii-eIdaa---s~igVd~IRe 106 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG-----DCCNSCSVCESINTN--QSVDIV-ELDAA---SNNGVDEIRN 106 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-----CCCcccHHHHHHHcC--CCCceE-Eeccc---cccCHHHHHH
Confidence 477899999999999999999998853211000 000000 00000 001111 11221 11121 112
Q ss_pred HHHHHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEe
Q psy4734 256 TFREMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYF 334 (367)
Q Consensus 256 ~~r~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~ 334 (367)
++..+... ...+++-+|+|. +|..-.+..|.+|. +| | ..|++..+||-+++....-|+..|||-.+.+
T Consensus 107 Ii~~~~~~P~~~~~KVIIIDE-ad~Lt~~A~NaLLK-----tL---E--EPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF 175 (605)
T PRK05896 107 IIDNINYLPTTFKYKVYIIDE-AHMLSTSAWNALLK-----TL---E--EPPKHVVFIFATTEFQKIPLTIISRCQRYNF 175 (605)
T ss_pred HHHHHHhchhhCCcEEEEEec-hHhCCHHHHHHHHH-----HH---H--hCCCcEEEEEECCChHhhhHHHHhhhhhccc
Confidence 22222221 223578899993 33322233333321 00 0 1345677888888888888888999999998
Q ss_pred cccC
Q psy4734 335 ELKC 338 (367)
Q Consensus 335 ~~~~ 338 (367)
.+-.
T Consensus 176 ~~Ls 179 (605)
T PRK05896 176 KKLN 179 (605)
T ss_pred CCCC
Confidence 7653
No 64
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.52 E-value=0.0045 Score=60.90 Aligned_cols=122 Identities=22% Similarity=0.268 Sum_probs=68.4
Q ss_pred HHHHHh--hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccch
Q psy4734 175 LKKIFE--VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI 252 (367)
Q Consensus 175 l~k~~~--~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGi 252 (367)
+..+++ ..++.+|.||||+||||+.++++.+.+ .....+|+-.-+++++
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--------------~~f~~~sAv~~gvkdl--------------- 89 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--------------AAFEALSAVTSGVKDL--------------- 89 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--------------CceEEeccccccHHHH---------------
Confidence 444555 456788899999999999999887553 1222333332222222
Q ss_pred HHHHHHHHhcCCCCCc-eEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCC-CCccCcchhhcee
Q psy4734 253 LAKTFREMAVSTTPDR-KWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-LEFASPATVSRVG 330 (367)
Q Consensus 253 l~~~~r~~~~~~~~~~-~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~-l~~asPatvsRcg 330 (367)
-.++.++......++ -.+++| =|..+|-.-.|--+-.+-+|..|.+.-+ |+| --...||..|||-
T Consensus 90 -r~i~e~a~~~~~~gr~tiLflD------EIHRfnK~QQD~lLp~vE~G~iilIGAT------TENPsF~ln~ALlSR~~ 156 (436)
T COG2256 90 -REIIEEARKNRLLGRRTILFLD------EIHRFNKAQQDALLPHVENGTIILIGAT------TENPSFELNPALLSRAR 156 (436)
T ss_pred -HHHHHHHHHHHhcCCceEEEEe------hhhhcChhhhhhhhhhhcCCeEEEEecc------CCCCCeeecHHHhhhhh
Confidence 222333322222244 445556 3445665444443444556666555432 122 2235799999999
Q ss_pred eEEecccC
Q psy4734 331 MIYFELKC 338 (367)
Q Consensus 331 ~v~~~~~~ 338 (367)
+..+.|-.
T Consensus 157 vf~lk~L~ 164 (436)
T COG2256 157 VFELKPLS 164 (436)
T ss_pred eeeeecCC
Confidence 99998753
No 65
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.50 E-value=0.0022 Score=57.06 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=78.7
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc---cccccceecccccccccchHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT---MGQLYGEFDSASHEWRDGILAKTFR 258 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t---~~~l~G~~d~~~~~W~dGil~~~~r 258 (367)
.|.++|.||+|+|||++.+.+++.+....... +.+.. ...+...+. ..++. .+++......-..+-.+++
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~-----~~~c~-~~~~c~~~~~~~~~d~~-~~~~~~~~~~~~~i~~i~~ 86 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGG-----GEPCG-ECPSCRLIEAGNHPDLH-RLEPEGQSIKVDQVRELVE 86 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCC-----CCCCC-CCHHHHHHHcCCCCcEE-EeccccCcCCHHHHHHHHH
Confidence 36688999999999999999988774321000 00000 000000000 00010 1111111110011222344
Q ss_pred HHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEeccc
Q psy4734 259 EMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 337 (367)
Q Consensus 259 ~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~ 337 (367)
.+... ....++-+|+|. +|..--+..|.+|. .| |. .+++..+||-+.+.....|+..|||-++.+.+-
T Consensus 87 ~~~~~~~~~~~kviiide-~~~l~~~~~~~Ll~-----~l---e~--~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~ 155 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIED-AERMNEAAANALLK-----TL---EE--PPPNTLFILITPSPEKLLPTIRSRCQVLPFPPL 155 (188)
T ss_pred HHccCcccCCeEEEEEec-hhhhCHHHHHHHHH-----Hh---cC--CCCCeEEEEEECChHhChHHHHhhcEEeeCCCC
Confidence 43332 235678999994 44333333344331 01 21 355777888888888899999999999998875
Q ss_pred CCchHHHHHHHHHHh
Q psy4734 338 CISWTTFFLSYQNEL 352 (367)
Q Consensus 338 ~~~~~~~~~swl~~~ 352 (367)
. ..-+..|+...
T Consensus 156 ~---~~~~~~~l~~~ 167 (188)
T TIGR00678 156 S---EEALLQWLIRQ 167 (188)
T ss_pred C---HHHHHHHHHHc
Confidence 4 23357777665
No 66
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.021 Score=56.34 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=67.2
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccc--hHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG--ILAKTFREM 260 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dG--il~~~~r~~ 260 (367)
+.++|.||+|+|||++.+.+++.+..-..... .+...+.+..+ +.. -..| -+..++.++
T Consensus 40 ~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~--~~~~~~~~~~l--------------~~~---~~~~~~~i~~l~~~~ 100 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARILARKINQPGYDDP--NEDFSFNIFEL--------------DAA---SNNSVDDIRNLIDQV 100 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--CCCCCcceEEe--------------ccc---cCCCHHHHHHHHHHH
Confidence 57889999999999999998776643110000 00001111111 110 0111 233334433
Q ss_pred hcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEeccc
Q psy4734 261 AVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 337 (367)
Q Consensus 261 ~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~ 337 (367)
... ...+++-+++|. +|..-.+.++.++. ++ | ..+++..+|+.+++.....|+..|||..+.+.+-
T Consensus 101 ~~~p~~~~~kiviIDE-~~~l~~~~~~~ll~-----~l---e--~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~ 167 (367)
T PRK14970 101 RIPPQTGKYKIYIIDE-VHMLSSAAFNAFLK-----TL---E--EPPAHAIFILATTEKHKIIPTILSRCQIFDFKRI 167 (367)
T ss_pred hhccccCCcEEEEEeC-hhhcCHHHHHHHHH-----HH---h--CCCCceEEEEEeCCcccCCHHHHhcceeEecCCc
Confidence 222 224568899993 33222223333321 01 0 0244567888888888888999999999888764
No 67
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.47 E-value=0.0034 Score=63.79 Aligned_cols=136 Identities=19% Similarity=0.217 Sum_probs=71.2
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCcccc--ccceecccccccccchHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQ--LYGEFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~--l~G~~d~~~~~W~dGil~~~~r~ 259 (367)
.|.++|.||+|+|||++.+.+++++.-...... ...... ..+.+.+..+. -+-.++.. ..-|+ ..+|+
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~----~~~c~~-c~~C~~i~~~~~~d~~~i~g~---~~~gi--d~ir~ 108 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFAKALNCQNPTED----QEPCNQ-CASCKEISSGTSLDVLEIDGA---SHRGI--EDIRQ 108 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccC----CCCCcc-cHHHHHHhcCCCCceEEeecc---ccCCH--HHHHH
Confidence 467889999999999999999998843211000 000000 00000000000 00011111 01111 12222
Q ss_pred Hhc-----CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEe
Q psy4734 260 MAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYF 334 (367)
Q Consensus 260 ~~~-----~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~ 334 (367)
... .....++.+|+|. +|..--+..|.++. ++ | ..++++.+||-+++.....|+..|||..+.+
T Consensus 109 i~~~l~~~~~~~~~kvvIIde-ad~lt~~~~n~LLk-----~l---E--ep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f 177 (451)
T PRK06305 109 INETVLFTPSKSRYKIYIIDE-VHMLTKEAFNSLLK-----TL---E--EPPQHVKFFLATTEIHKIPGTILSRCQKMHL 177 (451)
T ss_pred HHHHHHhhhhcCCCEEEEEec-HHhhCHHHHHHHHH-----Hh---h--cCCCCceEEEEeCChHhcchHHHHhceEEeC
Confidence 211 1235679999994 34333344444321 00 1 1345777888888888888999999999999
Q ss_pred cccC
Q psy4734 335 ELKC 338 (367)
Q Consensus 335 ~~~~ 338 (367)
.+-.
T Consensus 178 ~~l~ 181 (451)
T PRK06305 178 KRIP 181 (451)
T ss_pred CCCC
Confidence 7653
No 68
>CHL00181 cbbX CbbX; Provisional
Probab=96.46 E-value=0.0028 Score=60.60 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=72.0
Q ss_pred heeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhcCC
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVST 264 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~~ 264 (367)
++|.||||+|||++.+.++..+..+.-... .+ ...++ ..++.|.+-..+. .-...+++++
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~-----~~--~~~v~-----~~~l~~~~~g~~~----~~~~~~l~~a---- 121 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKK-----GH--LLTVT-----RDDLVGQYIGHTA----PKTKEVLKKA---- 121 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCC-----Cc--eEEec-----HHHHHHHHhccch----HHHHHHHHHc----
Confidence 788999999999999999887654421110 01 12222 2233333211110 0111233322
Q ss_pred CCCceEEEEcCC-----------CChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecC-----CCCccCcchhhc
Q psy4734 265 TPDRKWIMFDGP-----------IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE-----NLEFASPATVSR 328 (367)
Q Consensus 265 ~~~~~wivfDG~-----------~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~-----~l~~asPatvsR 328 (367)
...-+++|-- ....-++.|..++++.. +++.+|+-.. .+....|+..||
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~~~~~~~~np~L~sR 186 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDRMDKFYESNPGLSSR 186 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhcCHHHHHh
Confidence 1246677711 22344556666666532 3344555442 233456999999
Q ss_pred ee-eEEecccCC-chHHHHHHHHHHhhhhhhH
Q psy4734 329 VG-MIYFELKCI-SWTTFFLSYQNELKEKLNE 358 (367)
Q Consensus 329 cg-~v~~~~~~~-~~~~~~~swl~~~~~~~~~ 358 (367)
|. .|++.+-.. .-..++..+++.....+.+
T Consensus 187 ~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~ 218 (287)
T CHL00181 187 IANHVDFPDYTPEELLQIAKIMLEEQQYQLTP 218 (287)
T ss_pred CCceEEcCCcCHHHHHHHHHHHHHHhcCCCCh
Confidence 98 466665432 2455666666654433333
No 69
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.01 Score=58.65 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=82.8
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCC--------Cccccccce---ecccccccc
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS--------ITMGQLYGE---FDSASHEWR 249 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka--------~t~~~l~G~---~d~~~~~W~ 249 (367)
..|.++|.||+|.||+++...+++++.--...... .-........+.+.+ -++.+++-- .+..+....
T Consensus 40 l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~-~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~ 118 (365)
T PRK07471 40 LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGD-GAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLR 118 (365)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCC-ccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccc
Confidence 35789999999999999999999887421100000 000000000000110 111222111 011111122
Q ss_pred cchHHHHHHHHhc-----CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcc
Q psy4734 250 DGILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPA 324 (367)
Q Consensus 250 dGil~~~~r~~~~-----~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPa 324 (367)
..|-..-+|+... .....++.+|+| ++|..-.+..|.+|. +| | ..+++..||+=+++....-|.
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviID-ead~m~~~aanaLLK---~L-----E--epp~~~~~IL~t~~~~~llpt 187 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVD-TADEMNANAANALLK---VL-----E--EPPARSLFLLVSHAPARLLPT 187 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEe-chHhcCHHHHHHHHH---HH-----h--cCCCCeEEEEEECCchhchHH
Confidence 2333334555432 223467889999 466555666676651 11 1 123456677777777777788
Q ss_pred hhhceeeEEecccCCchHHHHHHHHHHh
Q psy4734 325 TVSRVGMIYFELKCISWTTFFLSYQNEL 352 (367)
Q Consensus 325 tvsRcg~v~~~~~~~~~~~~~~swl~~~ 352 (367)
..|||-.+.+.+-.- .-+..|+...
T Consensus 188 i~SRc~~i~l~~l~~---~~i~~~L~~~ 212 (365)
T PRK07471 188 IRSRCRKLRLRPLAP---EDVIDALAAA 212 (365)
T ss_pred hhccceEEECCCCCH---HHHHHHHHHh
Confidence 899999999987542 4556676553
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.37 E-value=0.041 Score=52.65 Aligned_cols=117 Identities=20% Similarity=0.237 Sum_probs=65.7
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhcC
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 263 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~ 263 (367)
.++|.||+|+|||++.+.++..+..-. ....+..+++... . . ...+...+.+.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~---------~~~~~i~~~~~~~-----------~--~--~~~~~~~i~~~~~~ 95 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGED---------WRENFLELNASDE-----------R--G--IDVIRNKIKEFART 95 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCc---------cccceEEeccccc-----------c--c--hHHHHHHHHHHHhc
Confidence 378899999999999999887663110 0111122222110 0 0 01122233333221
Q ss_pred ---CCCCceEEEEcCCCChH---hhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEeccc
Q psy4734 264 ---TTPDRKWIMFDGPIDAV---WIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 337 (367)
Q Consensus 264 ---~~~~~~wivfDG~~d~~---wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~ 337 (367)
.....+.+++|. +|.. ..+.|...++. .+++.++||-++......++..+||.++.+.+-
T Consensus 96 ~~~~~~~~~vviiDe-~~~l~~~~~~~L~~~le~-------------~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l 161 (319)
T PRK00440 96 APVGGAPFKIIFLDE-ADNLTSDAQQALRRTMEM-------------YSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPL 161 (319)
T ss_pred CCCCCCCceEEEEeC-cccCCHHHHHHHHHHHhc-------------CCCCCeEEEEeCCccccchhHHHHhheeeeCCC
Confidence 123578999994 3322 23334333322 234567888777777777888999999998764
Q ss_pred C
Q psy4734 338 C 338 (367)
Q Consensus 338 ~ 338 (367)
.
T Consensus 162 ~ 162 (319)
T PRK00440 162 K 162 (319)
T ss_pred C
Confidence 4
No 71
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.30 E-value=0.0066 Score=59.41 Aligned_cols=156 Identities=16% Similarity=0.230 Sum_probs=91.0
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhh-c-c---------ccccceeEEEEeCCCCCccccccceecc------
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKK-S-A---------TMKEFKTGYKIINPKSITMGQLYGEFDS------ 243 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~-~-~---------~~~~~~v~~~~inpka~t~~~l~G~~d~------ 243 (367)
..|+++|.||+|.||+++.+.+++++.--.... . + -..+..-.++.+.|..... ...|.-|.
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~-~~~~~~~~~~~~~~ 98 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAA-EAPGAADEAKEADA 98 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc-cccccccccccchh
Confidence 448899999999999999999999884321100 0 0 0111222344455542110 00010000
Q ss_pred -ccccc----ccchHHHHHHHHhc-----CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEE
Q psy4734 244 -ASHEW----RDGILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 313 (367)
Q Consensus 244 -~~~~W----~dGil~~~~r~~~~-----~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~if 313 (367)
..+.. ...+-..-+|+... ......|-+|+| +.|..=.+.-|++|- +| | ..|++..||+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~-~ae~m~~~AaNaLLK---tL-----E--EPp~~t~fiL 167 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLY-PAEALNVAAANALLK---TL-----E--EPPPGTVFLL 167 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEe-chhhcCHHHHHHHHH---Hh-----c--CCCcCcEEEE
Confidence 00000 01122233343321 223567888888 777776777777651 11 2 3577888999
Q ss_pred ecCCCCccCcchhhceeeEEecccCCchHHHHHHHHHH
Q psy4734 314 ECENLEFASPATVSRVGMIYFELKCISWTTFFLSYQNE 351 (367)
Q Consensus 314 E~~~l~~asPatvsRcg~v~~~~~~~~~~~~~~swl~~ 351 (367)
-+++....=|..+|||-.+++.+-. ..-+..||..
T Consensus 168 ~t~~~~~LLpTI~SRcq~i~~~~~~---~~~~~~~L~~ 202 (342)
T PRK06964 168 VSARIDRLLPTILSRCRQFPMTVPA---PEAAAAWLAA 202 (342)
T ss_pred EECChhhCcHHHHhcCEEEEecCCC---HHHHHHHHHH
Confidence 9999999999999999999998764 2566667754
No 72
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.0034 Score=62.77 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=45.1
Q ss_pred CCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccCCchHHHH
Q psy4734 266 PDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTTFF 345 (367)
Q Consensus 266 ~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~~~~~~~~ 345 (367)
.+++-+|+|. +|..-.+..|.++. .| | ..+++..|||-+++.....|+..|||.++.+.+-. ..-+
T Consensus 126 ~~~kvvIIde-a~~l~~~~~~~LLk-----~L---E--ep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~---~~ei 191 (397)
T PRK14955 126 GRYRVYIIDE-VHMLSIAAFNAFLK-----TL---E--EPPPHAIFIFATTELHKIPATIASRCQRFNFKRIP---LEEI 191 (397)
T ss_pred CCeEEEEEeC-hhhCCHHHHHHHHH-----HH---h--cCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCC---HHHH
Confidence 4568888984 33333333343321 01 1 24567778888888888889899999999987654 2334
Q ss_pred HHHHHH
Q psy4734 346 LSYQNE 351 (367)
Q Consensus 346 ~swl~~ 351 (367)
..|+..
T Consensus 192 ~~~l~~ 197 (397)
T PRK14955 192 QQQLQG 197 (397)
T ss_pred HHHHHH
Confidence 455554
No 73
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.26 E-value=0.0044 Score=64.63 Aligned_cols=134 Identities=19% Similarity=0.218 Sum_probs=74.8
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCcccccc--ceecccccccccchHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLY--GEFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~--G~~d~~~~~W~dGil~~~~r~ 259 (367)
.|..+|.||+|.|||++.+.+++++.--.... ..+... .-+++.+..+.-+ -.+|..+ ..| ..-+|+
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~-----~~pC~~-C~~C~~i~~~~~~dv~~idgas---~~~--vddIr~ 106 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCVNGPT-----PMPCGE-CSSCKSIDNDNSLDVIEIDGAS---NTS--VQDVRQ 106 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhccccCCC-----CCCCcc-chHHHHHHcCCCCCeEEecCcc---cCC--HHHHHH
Confidence 45688999999999999999999885321100 000000 0011111111000 0112111 111 122333
Q ss_pred Hh----c-CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEe
Q psy4734 260 MA----V-STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYF 334 (367)
Q Consensus 260 ~~----~-~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~ 334 (367)
.. . ....+.+-+|+|. ++..--+..|.+|. .-| ..|+++.|||-++++....|+..|||..+.+
T Consensus 107 l~e~~~~~p~~~~~KVvIIDE-a~~Ls~~a~naLLK--------~LE--epp~~~vfI~~tte~~kL~~tI~SRc~~~~f 175 (563)
T PRK06647 107 IKEEIMFPPASSRYRVYIIDE-VHMLSNSAFNALLK--------TIE--EPPPYIVFIFATTEVHKLPATIKSRCQHFNF 175 (563)
T ss_pred HHHHHHhchhcCCCEEEEEEC-hhhcCHHHHHHHHH--------hhc--cCCCCEEEEEecCChHHhHHHHHHhceEEEe
Confidence 32 1 1235678899994 55444455555431 122 2567888999999998888899999999998
Q ss_pred ccc
Q psy4734 335 ELK 337 (367)
Q Consensus 335 ~~~ 337 (367)
.+-
T Consensus 176 ~~l 178 (563)
T PRK06647 176 RLL 178 (563)
T ss_pred cCC
Confidence 864
No 74
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.24 E-value=0.011 Score=62.23 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=45.6
Q ss_pred CCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccCCchHHHH
Q psy4734 266 PDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTTFF 345 (367)
Q Consensus 266 ~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~~~~~~~~ 345 (367)
..++-+|+|. +|..-.+..|.+|.- | | ..+++..|||-+++....-|+..|||-++.+.+-.- .-+
T Consensus 126 ~~~KVvIIdE-ad~Lt~~a~naLLK~-----L---E--ePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~---~ei 191 (620)
T PRK14954 126 GRYRVYIIDE-VHMLSTAAFNAFLKT-----L---E--EPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPL---DEI 191 (620)
T ss_pred CCCEEEEEeC-hhhcCHHHHHHHHHH-----H---h--CCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCH---HHH
Confidence 4578899994 444333444444320 0 0 134566788888888888888899999999976542 335
Q ss_pred HHHHHH
Q psy4734 346 LSYQNE 351 (367)
Q Consensus 346 ~swl~~ 351 (367)
..|+..
T Consensus 192 ~~~L~~ 197 (620)
T PRK14954 192 QSQLQM 197 (620)
T ss_pred HHHHHH
Confidence 556654
No 75
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.02 Score=55.90 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=87.1
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhc----------cccccceeEEEEeCCCCCccccccceeccccccccc
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS----------ATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRD 250 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~----------~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~d 250 (367)
..|..+|.||+|.||+++...+++++.=...... ....+..-.++.+.|.. . ..
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--------------~--~~ 86 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK--------------G--KS 86 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc--------------c--cc
Confidence 4578999999999999999999988732110000 00011122233333321 0 00
Q ss_pred chHHHHHHHHhc-----CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcch
Q psy4734 251 GILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPAT 325 (367)
Q Consensus 251 Gil~~~~r~~~~-----~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPat 325 (367)
.|-..-+|+... ......|.+|+| +.|..=.+.-|++|- +| | .-|++.-||.=+++....-|..
T Consensus 87 ~I~idqiR~l~~~~~~~~~~g~~kV~iI~-~ae~m~~~AaNaLLK---tL-----E--EPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARLGGAKVVWLP-DAALLTDAAANALLK---TL-----E--EPPENTWFFLACREPARLLATL 155 (334)
T ss_pred cCCHHHHHHHHHHHhhccccCCceEEEEc-chHhhCHHHHHHHHH---Hh-----c--CCCCCeEEEEEECChhhChHHH
Confidence 122223444322 234568999999 666666667777651 11 1 2366777888899999999988
Q ss_pred hhceeeEEecccCCchHHHHHHHHHH
Q psy4734 326 VSRVGMIYFELKCISWTTFFLSYQNE 351 (367)
Q Consensus 326 vsRcg~v~~~~~~~~~~~~~~swl~~ 351 (367)
+|||-.+++.+-. ...+..||..
T Consensus 156 rSRCq~~~~~~~~---~~~~~~~L~~ 178 (334)
T PRK07993 156 RSRCRLHYLAPPP---EQYALTWLSR 178 (334)
T ss_pred HhccccccCCCCC---HHHHHHHHHH
Confidence 9999999998754 3677778854
No 76
>PRK04195 replication factor C large subunit; Provisional
Probab=96.12 E-value=0.041 Score=56.47 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=64.4
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHh
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 261 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~ 261 (367)
.+.+++.||+|+|||++++.+++.++ ..+..+|+.... ....+..++..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~--------------~~~ielnasd~r---------------~~~~i~~~i~~~~ 89 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG--------------WEVIELNASDQR---------------TADVIERVAGEAA 89 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC--------------CCEEEEcccccc---------------cHHHHHHHHHHhh
Confidence 45688999999999999999877652 112234443211 0012333333332
Q ss_pred cCC---CCCceEEEEcCCCC-------hHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCc-chhhcee
Q psy4734 262 VST---TPDRKWIMFDGPID-------AVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASP-ATVSRVG 330 (367)
Q Consensus 262 ~~~---~~~~~wivfDG~~d-------~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asP-atvsRcg 330 (367)
... +...+-||+|. +| ...++.|..+++. .+..+|+-+.+.....| ...+||.
T Consensus 90 ~~~sl~~~~~kvIiIDE-aD~L~~~~d~~~~~aL~~~l~~---------------~~~~iIli~n~~~~~~~k~Lrsr~~ 153 (482)
T PRK04195 90 TSGSLFGARRKLILLDE-VDGIHGNEDRGGARAILELIKK---------------AKQPIILTANDPYDPSLRELRNACL 153 (482)
T ss_pred ccCcccCCCCeEEEEec-CcccccccchhHHHHHHHHHHc---------------CCCCEEEeccCccccchhhHhccce
Confidence 221 13578899982 32 2344555444432 22345665666666666 5678999
Q ss_pred eEEecccC
Q psy4734 331 MIYFELKC 338 (367)
Q Consensus 331 ~v~~~~~~ 338 (367)
.|.+.+-.
T Consensus 154 ~I~f~~~~ 161 (482)
T PRK04195 154 MIEFKRLS 161 (482)
T ss_pred EEEecCCC
Confidence 99998654
No 77
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.012 Score=62.05 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=72.0
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC---ccccccceecccccccccchHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI---TMGQLYGEFDSASHEWRDGILAKTFR 258 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~---t~~~l~G~~d~~~~~W~dGil~~~~r 258 (367)
.|.++|.||+|+|||++.+.+++.+.-...... ........ =.++.+ +..+++ .++.. ...|+ .-+|
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~---~~~~Cg~C-~~C~~i~~g~h~D~~-ei~~~---~~~~v--d~IR 107 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNCLNSDKP---TPEPCGKC-ELCRAIAAGNALDVI-EIDAA---SNTGV--DNIR 107 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcCCCcCCC---CCCCCccc-HHHHHHhcCCCccEE-EEecc---ccCCH--HHHH
Confidence 367899999999999999999998853211000 00000000 000000 000111 11221 12222 2334
Q ss_pred HHhc----C-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEE
Q psy4734 259 EMAV----S-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIY 333 (367)
Q Consensus 259 ~~~~----~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~ 333 (367)
+... . .....+-+|+|. +|..-.+..|.+|. .=| ..++++.||+-+.+....-|+..|||..+.
T Consensus 108 eii~~a~~~p~~~~~KViIIDE-ad~Lt~~a~naLLK--------~LE--ePp~~tvfIL~t~~~~~llpTIrSRc~~~~ 176 (620)
T PRK14948 108 ELIERAQFAPVQARWKVYVIDE-CHMLSTAAFNALLK--------TLE--EPPPRVVFVLATTDPQRVLPTIISRCQRFD 176 (620)
T ss_pred HHHHHHhhChhcCCceEEEEEC-ccccCHHHHHHHHH--------HHh--cCCcCeEEEEEeCChhhhhHHHHhheeEEE
Confidence 3321 1 124568999993 55444445555431 111 234567788888888888899999999998
Q ss_pred eccc
Q psy4734 334 FELK 337 (367)
Q Consensus 334 ~~~~ 337 (367)
+.+-
T Consensus 177 f~~l 180 (620)
T PRK14948 177 FRRI 180 (620)
T ss_pred ecCC
Confidence 8744
No 78
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.11 E-value=0.014 Score=56.86 Aligned_cols=127 Identities=16% Similarity=0.184 Sum_probs=68.5
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccc----------cccceeEEEEeCCCCCccccccceecccccccccc-
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSAT----------MKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG- 251 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~----------~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dG- 251 (367)
|.++|.||+|+|||++.+.+++++.--....... ..+....+..+++.. ..+
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-----------------~~~~ 99 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS-----------------NNGV 99 (355)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-----------------cCCH
Confidence 5678999999999999999998874211000000 000000111122210 011
Q ss_pred -hHHHHHHHHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhce
Q psy4734 252 -ILAKTFREMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRV 329 (367)
Q Consensus 252 -il~~~~r~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRc 329 (367)
-+..++..+... ...+++.+|+|. +|..--+..|.++. .+ | ..++++.+||-+++.....|+..|||
T Consensus 100 ~~~~~l~~~~~~~p~~~~~~vviide-a~~l~~~~~~~Ll~-----~l---e--~~~~~~~lIl~~~~~~~l~~~l~sr~ 168 (355)
T TIGR02397 100 DDIREILDNVKYAPSSGKYKVYIIDE-VHMLSKSAFNALLK-----TL---E--EPPEHVVFILATTEPHKIPATILSRC 168 (355)
T ss_pred HHHHHHHHHHhcCcccCCceEEEEeC-hhhcCHHHHHHHHH-----HH---h--CCccceeEEEEeCCHHHHHHHHHhhe
Confidence 122334333322 234578899994 33222233333321 01 1 12567778888888888888999999
Q ss_pred eeEEeccc
Q psy4734 330 GMIYFELK 337 (367)
Q Consensus 330 g~v~~~~~ 337 (367)
-.+.+.+-
T Consensus 169 ~~~~~~~~ 176 (355)
T TIGR02397 169 QRFDFKRI 176 (355)
T ss_pred eEEEcCCC
Confidence 98888643
No 79
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.09 E-value=0.01 Score=57.82 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=74.4
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhcc----------ccccceeEEEEeCCCCCccccccceeccccccccc
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA----------TMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRD 250 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~----------~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~d 250 (367)
..|..+|.||+|+||+++.+.+++++.--...... ...+..-.++.+.|. ...
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~--------------~~~--- 89 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD--------------GQS--- 89 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc--------------ccc---
Confidence 44678999999999999999998887421100000 000000011112221 100
Q ss_pred chHHHHHHHHhc-----CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcch
Q psy4734 251 GILAKTFREMAV-----STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPAT 325 (367)
Q Consensus 251 Gil~~~~r~~~~-----~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPat 325 (367)
+-..-+|+... .....+|.+|+|. +|..-.+..|.+|.- =| ..|+++.||+-+++....-|+.
T Consensus 90 -i~id~ir~l~~~~~~~~~~~~~kvviI~~-a~~~~~~a~NaLLK~--------LE--EPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 90 -IKKDQIRYLKEEFSKSGVESNKKVYIIEH-ADKMTASAANSLLKF--------LE--EPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred -CCHHHHHHHHHHHhhCCcccCceEEEeeh-HhhhCHHHHHHHHHH--------hc--CCCCCceEEEEeCChHhCcHHH
Confidence 11122333321 1234679999995 444444444544310 11 2567888999888999999999
Q ss_pred hhceeeEEecccC
Q psy4734 326 VSRVGMIYFELKC 338 (367)
Q Consensus 326 vsRcg~v~~~~~~ 338 (367)
.|||-.+++.+-.
T Consensus 158 rSRc~~i~~~~~~ 170 (329)
T PRK08058 158 LSRCQVVEFRPLP 170 (329)
T ss_pred HhhceeeeCCCCC
Confidence 9999999998653
No 80
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.06 E-value=0.012 Score=64.41 Aligned_cols=148 Identities=20% Similarity=0.250 Sum_probs=81.3
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCC----CCCccccccceecccccccc-cchHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINP----KSITMGQLYGEFDSASHEWR-DGILAKTFR 258 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inp----ka~t~~~l~G~~d~~~~~W~-dGil~~~~r 258 (367)
.++|+||+|+|||++.+.|+..+..- +.++. .++. ...+...|+|.. |...... .|.++..+|
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~---------~~~~i--~id~se~~~~~~~~~LiG~~-pgy~g~~~~g~l~~~v~ 667 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDS---------DDAMV--RIDMSEFMEKHSVSRLVGAP-PGYVGYEEGGYLTEAVR 667 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcC---------CCcEE--EEEhHHhhhhhhHHHHhCCC-CcccccchhHHHHHHHH
Confidence 46788999999999999998766311 11121 2222 223455677742 1111122 356666665
Q ss_pred HHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCC------------------
Q psy4734 259 EMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL------------------ 318 (367)
Q Consensus 259 ~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l------------------ 318 (367)
.. ...-++|| +..++.-...|-.++|+. .++-+.|..+.+.+.+ +|+ |+|+
T Consensus 668 ~~------p~~vLllDEieka~~~v~~~Ll~ile~g-~l~d~~gr~vd~rn~i-iI~-TSN~g~~~~~~~~~~~~~~~~~ 738 (857)
T PRK10865 668 RR------PYSVILLDEVEKAHPDVFNILLQVLDDG-RLTDGQGRTVDFRNTV-VIM-TSNLGSDLIQERFGELDYAHMK 738 (857)
T ss_pred hC------CCCeEEEeehhhCCHHHHHHHHHHHhhC-ceecCCceEEeecccE-EEE-eCCcchHHHHHhccccchHHHH
Confidence 32 23578888 333455445555566554 3444566666665432 332 5554
Q ss_pred --------CccCcchhhce-eeEEecccCC-chHHHHHHHHHHh
Q psy4734 319 --------EFASPATVSRV-GMIYFELKCI-SWTTFFLSYQNEL 352 (367)
Q Consensus 319 --------~~asPatvsRc-g~v~~~~~~~-~~~~~~~swl~~~ 352 (367)
..-.|+.++|+ .++.+.|-.- .-..++.-.++.+
T Consensus 739 ~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l 782 (857)
T PRK10865 739 ELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRL 782 (857)
T ss_pred HHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence 23468999999 6666665432 2344445555443
No 81
>KOG0989|consensus
Probab=96.05 E-value=0.0027 Score=60.30 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=42.3
Q ss_pred ceEEEEcCCCChHhhhhhhh---ccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccC
Q psy4734 268 RKWIMFDGPIDAVWIENMNT---VLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKC 338 (367)
Q Consensus 268 ~~wivfDG~~d~~wie~lns---vlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~ 338 (367)
.|.|||| ++|..--+.=++ ++++ .+.+.+|++=++.++.+-+-.+|||.=..+.+..
T Consensus 130 fKiiIlD-Ecdsmtsdaq~aLrr~mE~-------------~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~ 189 (346)
T KOG0989|consen 130 FKIIILD-ECDSMTSDAQAALRRTMED-------------FSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLK 189 (346)
T ss_pred ceEEEEe-chhhhhHHHHHHHHHHHhc-------------cccceEEEEEcCChhhCChHHHhhHHHhcCCCcc
Confidence 4999999 666553333222 2222 3567889999999999999999999999988654
No 82
>PRK06893 DNA replication initiation factor; Validated
Probab=96.05 E-value=0.01 Score=54.71 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=20.2
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.+++.||+|+|||++.+.++..+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999998887653
No 83
>PRK07261 topology modulation protein; Provisional
Probab=96.02 E-value=0.011 Score=51.86 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=18.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||+.+.|++.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5788999999999998887554
No 84
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.99 E-value=0.0056 Score=59.69 Aligned_cols=142 Identities=21% Similarity=0.292 Sum_probs=81.8
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhcc---------ccc-----cceeEEE----EeCCCCCccccccceec
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSA---------TMK-----EFKTGYK----IINPKSITMGQLYGEFD 242 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~---------~~~-----~~~v~~~----~inpka~t~~~l~G~~d 242 (367)
..+++++.|++|+|||++.+.++..+..+...... +.. ...+... +-=|-..|.+.|+|.+|
T Consensus 28 ~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d 107 (334)
T PRK13407 28 GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALD 107 (334)
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchh
Confidence 34779999999999999999999988432211100 000 0000000 01355677888999876
Q ss_pred cc----cc--ccccchHHHHHHHHhcCCCCCceEEEEcC--CCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEe
Q psy4734 243 SA----SH--EWRDGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE 314 (367)
Q Consensus 243 ~~----~~--~W~dGil~~~~r~~~~~~~~~~~wivfDG--~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE 314 (367)
.. ++ .++.|.+.. .+.--+++|. ..++.-.+.|-.+|++.....-..|...+.+..+.++ -
T Consensus 108 ~~~~l~~g~~~~~~G~l~~----------A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfivi-A 176 (334)
T PRK13407 108 IERALTRGEKAFEPGLLAR----------ANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLV-G 176 (334)
T ss_pred hhhhhhcCCeeecCCceEE----------cCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEE-e
Confidence 53 12 355555421 1123577772 2455555666666666654444556666777665444 4
Q ss_pred cCCC-C-ccCcchhhceeeEE
Q psy4734 315 CENL-E-FASPATVSRVGMIY 333 (367)
Q Consensus 315 ~~~l-~-~asPatvsRcg~v~ 333 (367)
+.+. . ...|+...|+++..
T Consensus 177 t~NP~e~~l~~aLldRF~~~v 197 (334)
T PRK13407 177 SGNPEEGELRPQLLDRFGLSV 197 (334)
T ss_pred cCCcccCCCCHHHHhhcceEE
Confidence 5553 2 36779999998643
No 85
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.96 E-value=0.015 Score=55.47 Aligned_cols=130 Identities=13% Similarity=0.152 Sum_probs=78.5
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhc--cccccceeEEEEeCCCCCccccccceecccccccccchHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS--ATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFR 258 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~--~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r 258 (367)
..|..+|.||+|+||+++...++..+.-...... .-..+....++.+.|..-+ ..+-..-+|
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~----------------~~I~idqiR 81 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG----------------RLHSIETPR 81 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC----------------CcCcHHHHH
Confidence 4688999999999999999999988742110000 0000111223333332110 001111223
Q ss_pred HH----hc-CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEE
Q psy4734 259 EM----AV-STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIY 333 (367)
Q Consensus 259 ~~----~~-~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~ 333 (367)
+. .. ......|.+|+| +.|..-.+.-|++|- +| | ..|++..||+-+++....-|...|||-.++
T Consensus 82 ~l~~~~~~~p~e~~~kv~ii~-~ad~mt~~AaNaLLK---~L-----E--EPp~~~~fiL~~~~~~~ll~TI~SRcq~~~ 150 (290)
T PRK05917 82 AIKKQIWIHPYESPYKIYIIH-EADRMTLDAISAFLK---VL-----E--DPPQHGVIILTSAKPQRLPPTIRSRSLSIH 150 (290)
T ss_pred HHHHHHhhCccCCCceEEEEe-chhhcCHHHHHHHHH---Hh-----h--cCCCCeEEEEEeCChhhCcHHHHhcceEEE
Confidence 32 22 223567888998 666666677777651 11 1 246788899999999999998899999999
Q ss_pred eccc
Q psy4734 334 FELK 337 (367)
Q Consensus 334 ~~~~ 337 (367)
+.+.
T Consensus 151 ~~~~ 154 (290)
T PRK05917 151 IPME 154 (290)
T ss_pred ccch
Confidence 9864
No 86
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.93 E-value=0.009 Score=58.56 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=25.7
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIA 210 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~ 210 (367)
+..+.|.||||+||||+.+.|+..+....
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ys 106 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEEYS 106 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 45578899999999999999999998864
No 87
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.01 Score=60.96 Aligned_cols=147 Identities=22% Similarity=0.237 Sum_probs=78.0
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCcc---ccccceecccccccccchH-HHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITM---GQLYGEFDSASHEWRDGIL-AKTF 257 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~---~~l~G~~d~~~~~W~dGil-~~~~ 257 (367)
.|..+|.||+|+||||+.+.+++++.-..... ..++.. ..|+..+.. .+++ .+|..+. .|+= .+.+
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~-----~~pc~~-c~nc~~i~~g~~~d~~-eidaas~---~gvd~ir~I 107 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLNCLNPQE-----GEPCGK-CENCVEIDKGSFPDLI-EIDAASN---RGIDDIRAL 107 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC-----CCCCCc-cHHHHHHhcCCCCcEE-EEeCccC---CCHHHHHHH
Confidence 35678899999999999999999885321110 001110 011111110 1111 1232211 1211 1222
Q ss_pred HHHhcC--CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEec
Q psy4734 258 REMAVS--TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFE 335 (367)
Q Consensus 258 r~~~~~--~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~ 335 (367)
++.+.. ....++-+|+|- +|....+..|.++.- |. ..|++..+|+-++++....|+..|||..+.+.
T Consensus 108 ~~~~~~~P~~~~~KVvIIDE-ad~Lt~~a~naLLk~-----LE-----epp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~ 176 (486)
T PRK14953 108 RDAVSYTPIKGKYKVYIIDE-AHMLTKEAFNALLKT-----LE-----EPPPRTIFILCTTEYDKIPPTILSRCQRFIFS 176 (486)
T ss_pred HHHHHhCcccCCeeEEEEEC-hhhcCHHHHHHHHHH-----Hh-----cCCCCeEEEEEECCHHHHHHHHHHhceEEEcC
Confidence 222222 234578999993 554444555554311 11 12567778888888888877788999998887
Q ss_pred ccCCchHHHHHHHHHHh
Q psy4734 336 LKCISWTTFFLSYQNEL 352 (367)
Q Consensus 336 ~~~~~~~~~~~swl~~~ 352 (367)
+-. ..-+..|+..+
T Consensus 177 ~ls---~~el~~~L~~i 190 (486)
T PRK14953 177 KPT---KEQIKEYLKRI 190 (486)
T ss_pred CCC---HHHHHHHHHHH
Confidence 543 23345566543
No 88
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.88 E-value=0.046 Score=57.46 Aligned_cols=134 Identities=20% Similarity=0.160 Sum_probs=70.4
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEE-----EeCCCCCccccccceecccccccccchH-HH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYK-----IINPKSITMGQLYGEFDSASHEWRDGIL-AK 255 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~-----~inpka~t~~~l~G~~d~~~~~W~dGil-~~ 255 (367)
.|.++|.||+|+||||+.+.+++++.-..... +.+.... +.+-...++- .+|..+ ..|+= .+
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-----~~pCg~C~sC~~i~~g~hpDv~----eId~a~---~~~Id~iR 105 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCETAPT-----GEPCNTCEQCRKVTQGMHVDVV----EIDGAS---NRGIDDAK 105 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccccCCCC-----CCCCcccHHHHHHhcCCCCceE----EEeccc---ccCHHHHH
Confidence 46788999999999999999999885211000 0000000 0000000011 112111 11220 01
Q ss_pred HHHHHhc--CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEE
Q psy4734 256 TFREMAV--STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIY 333 (367)
Q Consensus 256 ~~r~~~~--~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~ 333 (367)
.+++... ......+.||+| ++|..-.+..|.+|.- -| ..++++.|||-+++.....+...|||-.+.
T Consensus 106 ~L~~~~~~~p~~g~~kVIIID-Ead~Lt~~a~naLLk~--------LE--EP~~~~ifILaTt~~~kll~TI~SRcq~i~ 174 (624)
T PRK14959 106 RLKEAIGYAPMEGRYKVFIID-EAHMLTREAFNALLKT--------LE--EPPARVTFVLATTEPHKFPVTIVSRCQHFT 174 (624)
T ss_pred HHHHHHHhhhhcCCceEEEEE-ChHhCCHHHHHHHHHH--------hh--ccCCCEEEEEecCChhhhhHHHHhhhhccc
Confidence 1222222 123457899999 4454444445554311 01 023567788888887777777789999998
Q ss_pred ecccC
Q psy4734 334 FELKC 338 (367)
Q Consensus 334 ~~~~~ 338 (367)
+.+-.
T Consensus 175 F~pLs 179 (624)
T PRK14959 175 FTRLS 179 (624)
T ss_pred cCCCC
Confidence 87653
No 89
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.88 E-value=0.027 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
++++||+||||||+++.+...+.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 56779999999999988766554
No 90
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.87 E-value=0.023 Score=53.33 Aligned_cols=131 Identities=12% Similarity=0.088 Sum_probs=80.2
Q ss_pred hhhhhheeccccCCCchhhHHHHHHHHHHHHhhhc----------cccccceeEEEEeCCCCCccccccceecccccccc
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS----------ATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWR 249 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~----------~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~ 249 (367)
...|..+|.|++|+||..++..+++++- +.... .-..+..-.++.+.|..-+ .| .|.
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~ll--C~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~----I~-id~------ 71 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIV--CTKANGFCKTCESCLKILNGKYNDFYLIFDQKNP----IK-KED------ 71 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHc--CCCCCCCCCCCHHHHHHhcCCCCCEEEecCCccc----CC-HHH------
Confidence 4568899999999999999888887763 21110 0011122233334443211 00 000
Q ss_pred cchHHHHHHHHhcCC--CCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhh
Q psy4734 250 DGILAKTFREMAVST--TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS 327 (367)
Q Consensus 250 dGil~~~~r~~~~~~--~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvs 327 (367)
.-.+.+...... ..+.|.+|++ +.|..-.+..|++|- +| | ..|++.-||+-+++....-|..+|
T Consensus 72 ---ir~l~~~l~~~s~e~~~~KV~II~-~ae~m~~~AaNaLLK---~L-----E--EPp~~t~fiLit~~~~~lLpTI~S 137 (261)
T PRK05818 72 ---ALSIINKLNRPSVESNGKKIYIIY-GIEKLNKQSANSLLK---LI-----E--EPPKNTYGIFTTRNENNILNTILS 137 (261)
T ss_pred ---HHHHHHHHccCchhcCCCEEEEec-cHhhhCHHHHHHHHH---hh-----c--CCCCCeEEEEEECChHhCchHhhh
Confidence 111223332222 3467999998 667777777777651 11 1 246788899999999999999999
Q ss_pred ceeeEEeccc
Q psy4734 328 RVGMIYFELK 337 (367)
Q Consensus 328 Rcg~v~~~~~ 337 (367)
||-.+++.+.
T Consensus 138 RCq~~~~~~~ 147 (261)
T PRK05818 138 RCVQYVVLSK 147 (261)
T ss_pred heeeeecCCh
Confidence 9999998654
No 91
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.026 Score=59.56 Aligned_cols=149 Identities=14% Similarity=0.124 Sum_probs=76.5
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCcccc--ccceecccccccccchHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQ--LYGEFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~--l~G~~d~~~~~W~dGil~~~~r~ 259 (367)
.|.++|.||+|.|||++.+.+++++.-.... ..+...... -++..+..+. -+-.+|..+..=.|- +-.++.+
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~----~~~~~Cg~C-~sC~~~~~~~~~n~~~ld~~~~~~vd~-Ir~li~~ 112 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTINCQNLT----ADGEACNEC-ESCVAFNEQRSYNIHELDAASNNSVDD-IRNLIEQ 112 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCCC----CCCCCCCcc-hHHHHHhcCCCCceEEecccccCCHHH-HHHHHHH
Confidence 4678899999999999999999887411000 000000000 0000000000 001112210000011 2223333
Q ss_pred HhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceee-cCCCCeEEEecCCCCccCcchhhceeeEEeccc
Q psy4734 260 MAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIK-MSNTMNLIFECENLEFASPATVSRVGMIYFELK 337 (367)
Q Consensus 260 ~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~-l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~ 337 (367)
+... -..+++.+|+|. +|..-.+..|.++. .+. .|++..|||-++......|+..|||.++.+.+-
T Consensus 113 ~~~~P~~~~~KVvIIde-a~~Ls~~a~naLLK-----------~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~l 180 (614)
T PRK14971 113 VRIPPQIGKYKIYIIDE-VHMLSQAAFNAFLK-----------TLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRI 180 (614)
T ss_pred HhhCcccCCcEEEEEEC-cccCCHHHHHHHHH-----------HHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCC
Confidence 3222 234689999995 33333334444431 111 356777889888888999999999999999865
Q ss_pred CCchHHHHHHHHHH
Q psy4734 338 CISWTTFFLSYQNE 351 (367)
Q Consensus 338 ~~~~~~~~~swl~~ 351 (367)
.- .-+..|+..
T Consensus 181 s~---~ei~~~L~~ 191 (614)
T PRK14971 181 QV---ADIVNHLQY 191 (614)
T ss_pred CH---HHHHHHHHH
Confidence 42 233455554
No 92
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.84 E-value=0.005 Score=50.25 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|+|||||||+.+.|++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999998876
No 93
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.81 E-value=0.021 Score=57.33 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.3
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|.||+|+||||+.+.++..+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468889999999999999887643
No 94
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.75 E-value=0.017 Score=53.53 Aligned_cols=25 Identities=8% Similarity=0.115 Sum_probs=20.8
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..+++.||+|+|||++.+.++..+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578899999999999998776654
No 95
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.63 E-value=0.0092 Score=55.57 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.8
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
++++|.|||||||..+.|++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 568899999999999999987753
No 96
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.60 E-value=0.052 Score=58.93 Aligned_cols=129 Identities=17% Similarity=0.212 Sum_probs=69.9
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCC-Cccccccceeccccccc---ccchHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS-ITMGQLYGEFDSASHEW---RDGILAKTFRE 259 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka-~t~~~l~G~~d~~~~~W---~dGil~~~~r~ 259 (367)
.++|+||||+|||++.+.++++++.- ...++-.. ....++-|.- ..| ..|-+-..+++
T Consensus 351 ~i~l~GppG~GKTtl~~~ia~~l~~~--------------~~~i~~~~~~d~~~i~g~~----~~~~g~~~G~~~~~l~~ 412 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAKATGRK--------------YVRMALGGVRDEAEIRGHR----RTYIGSMPGKLIQKMAK 412 (784)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC--------------EEEEEcCCCCCHHHhccch----hccCCCCCcHHHHHHHh
Confidence 37788999999999999988876421 11222111 1222333321 112 23444444443
Q ss_pred HhcCCCCCceEEEEcCCCChH-------hhhhhhhccCCCCceeecc--cce-eecCCCCeEEEecCCCCccCcchhhce
Q psy4734 260 MAVSTTPDRKWIMFDGPIDAV-------WIENMNTVLDDNKKLCLIN--GEI-IKMSNTMNLIFECENLEFASPATVSRV 329 (367)
Q Consensus 260 ~~~~~~~~~~wivfDG~~d~~-------wie~lnsvlddn~~l~L~~--ge~-i~l~~~~~~ifE~~~l~~asPatvsRc 329 (367)
+. ....-+++| .+|.. -...|-.+||+..-..... .+. +.+ +++-|| -|+|....+||.++||
T Consensus 413 ~~----~~~~villD-Eidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl-s~v~~i-~TaN~~~i~~aLl~R~ 485 (784)
T PRK10787 413 VG----VKNPLFLLD-EIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL-SDVMFV-ATSNSMNIPAPLLDRM 485 (784)
T ss_pred cC----CCCCEEEEE-ChhhcccccCCCHHHHHHHHhccccEEEEecccccccccC-CceEEE-EcCCCCCCCHHHhcce
Confidence 32 122357777 33211 1355666677643333321 111 122 344344 4888778999999999
Q ss_pred eeEEeccc
Q psy4734 330 GMIYFELK 337 (367)
Q Consensus 330 g~v~~~~~ 337 (367)
-+|.+.+-
T Consensus 486 ~ii~~~~~ 493 (784)
T PRK10787 486 EVIRLSGY 493 (784)
T ss_pred eeeecCCC
Confidence 99887654
No 97
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.56 E-value=0.015 Score=53.80 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.2
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+++.|||||||||..+.|++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 77889999999999999988763
No 98
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.56 E-value=0.028 Score=58.98 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=76.3
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEE----Ee-CCCCCccccccceecccccccccchHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYK----II-NPKSITMGQLYGEFDSASHEWRDGILAKT 256 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~----~i-npka~t~~~l~G~~d~~~~~W~dGil~~~ 256 (367)
.|..+|.||+|+||||+.+.+++++.--.... ..+.... .| +-.+...- .+|..+..=.|- +-.+
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-----~~~c~~c~~c~~i~~g~~~d~~----eid~~s~~~v~~-ir~l 107 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALNCEQGLT-----AEPCNVCPPCVEITEGRSVDVF----EIDGASNTGVDD-IREL 107 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-----CCCCCccHHHHHHhcCCCCCee----eeeccCccCHHH-HHHH
Confidence 46778999999999999999999885221100 0000000 00 00000011 112111100000 1111
Q ss_pred HHHHhc-CCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEec
Q psy4734 257 FREMAV-STTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFE 335 (367)
Q Consensus 257 ~r~~~~-~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~ 335 (367)
...+.. ......|-+|+|. +|..-.+..|.+|- +| | ..++++.|||-|++.....|+..|||..+.+.
T Consensus 108 ~~~~~~~p~~~~~KVvIIde-v~~Lt~~a~naLLk-----~L---E--epp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~ 176 (576)
T PRK14965 108 RENVKYLPSRSRYKIFIIDE-VHMLSTNAFNALLK-----TL---E--EPPPHVKFIFATTEPHKVPITILSRCQRFDFR 176 (576)
T ss_pred HHHHHhccccCCceEEEEEC-hhhCCHHHHHHHHH-----HH---H--cCCCCeEEEEEeCChhhhhHHHHHhhhhhhcC
Confidence 111111 1234678899994 44443444444431 00 0 13678899999999988888889999999887
Q ss_pred ccCCchHHHHHHHHHH
Q psy4734 336 LKCISWTTFFLSYQNE 351 (367)
Q Consensus 336 ~~~~~~~~~~~swl~~ 351 (367)
+-.. .-+..|+..
T Consensus 177 ~l~~---~~i~~~L~~ 189 (576)
T PRK14965 177 RIPL---QKIVDRLRY 189 (576)
T ss_pred CCCH---HHHHHHHHH
Confidence 5532 334455544
No 99
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.52 E-value=0.022 Score=55.70 Aligned_cols=140 Identities=21% Similarity=0.282 Sum_probs=78.2
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccc----c--------------cc--------ceeEEEEeCCCCCccc
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSAT----M--------------KE--------FKTGYKIINPKSITMG 235 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~----~--------------~~--------~~v~~~~inpka~t~~ 235 (367)
..++++.|++|+||||+.+.++..+.......... + .. .++.+.. =|-.++-+
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-lP~~~t~d 103 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVD-LPLGATED 103 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCC-CCCCCccc
Confidence 45699999999999999999988774321110000 0 00 0011111 24456667
Q ss_pred cccceeccc----cc--ccccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCC
Q psy4734 236 QLYGEFDSA----SH--EWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSN 307 (367)
Q Consensus 236 ~l~G~~d~~----~~--~W~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~ 307 (367)
.++|..|.. ++ .++.|++.+ .+.-.+++| ..+++.-...|-.+|++...-.-..|...+.+.
T Consensus 104 ~l~G~~d~~~~l~~g~~~~~~GlL~~----------A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~ 173 (337)
T TIGR02030 104 RVCGTLDIERALTEGVKAFEPGLLAR----------ANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPA 173 (337)
T ss_pred ceecchhHhhHhhcCCEEeecCccee----------ccCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCC
Confidence 899987632 22 245554321 223567777 234555445555566665433334566666665
Q ss_pred CCeEEEecCCCC--ccCcchhhceeeEE
Q psy4734 308 TMNLIFECENLE--FASPATVSRVGMIY 333 (367)
Q Consensus 308 ~~~~ifE~~~l~--~asPatvsRcg~v~ 333 (367)
.+ ++.-+.|.. ...|+...|.++..
T Consensus 174 r~-iviat~np~eg~l~~~LldRf~l~i 200 (337)
T TIGR02030 174 RF-VLVGSGNPEEGELRPQLLDRFGLHA 200 (337)
T ss_pred CE-EEEeccccccCCCCHHHHhhcceEE
Confidence 44 344444433 47789999999753
No 100
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.46 E-value=0.0087 Score=60.68 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=71.8
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
.++++.||+|+|||++.+.++..+..... +.+|.+ ++.... +.++...+ ..|-...+.....
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~-------~~~v~y--i~~~~f-~~~~~~~~-------~~~~~~~f~~~~~- 192 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP-------DLRVMY--ITSEKF-LNDLVDSM-------KEGKLNEFREKYR- 192 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCC-------CCeEEE--EEHHHH-HHHHHHHH-------hcccHHHHHHHHH-
Confidence 35889999999999999988876643210 112322 222110 01111111 1111112221110
Q ss_pred CCCCCceEEEEcCCC---C-----hHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhcee---e
Q psy4734 263 STTPDRKWIMFDGPI---D-----AVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG---M 331 (367)
Q Consensus 263 ~~~~~~~wivfDG~~---d-----~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg---~ 331 (367)
...+.+++|-.- + ....+.+|.+.+.++.+.+++.. ...++....|..+||+. +
T Consensus 193 ---~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~------------~p~~l~~l~~rL~SR~~~gl~ 257 (440)
T PRK14088 193 ---KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR------------EPQKLSEFQDRLVSRFQMGLV 257 (440)
T ss_pred ---hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCC------------CHHHHHHHHHHHhhHHhcCce
Confidence 135789999431 1 12444455555544433332211 11246667889999997 7
Q ss_pred EEecccCCchH-HHHHHHHHHhhhhhhHHH
Q psy4734 332 IYFELKCISWT-TFFLSYQNELKEKLNEEQ 360 (367)
Q Consensus 332 v~~~~~~~~~~-~~~~swl~~~~~~~~~~~ 360 (367)
+.+.+.+..-+ .++........-.++++.
T Consensus 258 v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev 287 (440)
T PRK14088 258 AKLEPPDEETRKKIARKMLEIEHGELPEEV 287 (440)
T ss_pred EeeCCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 77877765433 334444443333344443
No 101
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.40 E-value=0.033 Score=55.19 Aligned_cols=95 Identities=19% Similarity=0.251 Sum_probs=50.6
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhc---cc---------------cccceeEEEE-eCCCCCc--cccc--c
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS---AT---------------MKEFKTGYKI-INPKSIT--MGQL--Y 238 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~---~~---------------~~~~~v~~~~-inpka~t--~~~l--~ 238 (367)
..-++|+||+|.||||++--||+.+....+... -| .+...|...+ ..|+.+. +..| +
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 334778999999999998888877763332211 01 1111222221 2333221 1111 0
Q ss_pred c--eecccccccccchHHHHHHHHhcCCCCCceEEEEcCC
Q psy4734 239 G--EFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFDGP 276 (367)
Q Consensus 239 G--~~d~~~~~W~dGil~~~~r~~~~~~~~~~~wivfDG~ 276 (367)
- -+|...+.-.|+....=+++......+..-.+|++--
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat 322 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSAT 322 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecC
Confidence 0 0355566677777777777766555555556666533
No 102
>PRK06217 hypothetical protein; Validated
Probab=95.39 E-value=0.015 Score=51.55 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|.+||||||+.+.|++.+
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6788999999999999988765
No 103
>PRK05642 DNA replication initiation factor; Validated
Probab=95.36 E-value=0.026 Score=52.20 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=19.8
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+.+.|++|+|||.+.+.++..+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457888999999999988876654
No 104
>KOG0741|consensus
Probab=95.36 E-value=0.021 Score=58.04 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=40.6
Q ss_pred CCCceeecc------hHHHHHHHHhcCCcccchhhHHHH--HhhhhhheeccccCCCchhhHHHHHHHHH
Q psy4734 146 FFPRFFFLS------NDELLEILSETKDPLRVQPHLKKI--FEVRHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 146 ~fprf~f~s------~~~Ll~ils~~~~~~~lq~~l~k~--~~~~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.-|.|-|-+ +.|.-+|..++-..+-.-|++-+- +....|+++.||||+|||.+.+-+.+.|+
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLN 281 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLN 281 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhc
Confidence 456676633 456666666654444444454333 34668899999999999999887666554
No 105
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.33 E-value=0.039 Score=53.45 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=82.2
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhh--hc--cccccceeEEEEeCCCCCcccccc-----ceecccccccccch
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAK--KS--ATMKEFKTGYKIINPKSITMGQLY-----GEFDSASHEWRDGI 252 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~--~~--~~~~~~~v~~~~inpka~t~~~l~-----G~~d~~~~~W~dGi 252 (367)
.|..+|.||+|.||+++...+++++.--... .. .......-.++.+.|.....++.. +..+. ...-..-|
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~-~~~~~~~I 104 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGL-KRKAPPQI 104 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccc-cccccccC
Confidence 4789999999999999999998887422100 00 000111222333444322211111 00000 00000012
Q ss_pred HHHHHHHHh----cC-CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhh
Q psy4734 253 LAKTFREMA----VS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS 327 (367)
Q Consensus 253 l~~~~r~~~----~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvs 327 (367)
-..-+|+.. .. ...+.|.+|+|. .|..=.+.-|.+|. .+.=||+..||+=+++....-|...|
T Consensus 105 ~id~ir~i~~~l~~~p~~~~~kVvII~~-ae~m~~~aaNaLLK-----------~LEEPp~~~fILi~~~~~~Ll~TI~S 172 (314)
T PRK07399 105 RLEQIREIKRFLSRPPLEAPRKVVVIED-AETMNEAAANALLK-----------TLEEPGNGTLILIAPSPESLLPTIVS 172 (314)
T ss_pred cHHHHHHHHHHHccCcccCCceEEEEEc-hhhcCHHHHHHHHH-----------HHhCCCCCeEEEEECChHhCcHHHHh
Confidence 122334332 22 235689999995 33333333344431 11114466788888889999999999
Q ss_pred ceeeEEecccCCchHHHHHHHHHHh
Q psy4734 328 RVGMIYFELKCISWTTFFLSYQNEL 352 (367)
Q Consensus 328 Rcg~v~~~~~~~~~~~~~~swl~~~ 352 (367)
||-.+.+.+-. ..-+..||...
T Consensus 173 Rcq~i~f~~l~---~~~~~~~L~~~ 194 (314)
T PRK07399 173 RCQIIPFYRLS---DEQLEQVLKRL 194 (314)
T ss_pred hceEEecCCCC---HHHHHHHHHHh
Confidence 99999998754 24556676654
No 106
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.25 E-value=0.045 Score=56.88 Aligned_cols=148 Identities=20% Similarity=0.200 Sum_probs=77.2
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc------cccccceec-ccc---cc-ccc
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT------MGQLYGEFD-SAS---HE-WRD 250 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t------~~~l~G~~d-~~~---~~-W~d 250 (367)
...+++.||+|+|||++.+.+........... .. ..-....+|+.+.. .+.++|... |.. +. ...
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~--~~--~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~ 161 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEEAKKNPASP--FK--EGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIA 161 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhccCCC--cC--CCCCEEEEccccccCCccccchhhcCCcccchhccccccccC
Confidence 35688999999999999888765332211100 00 00122334543321 134455421 100 00 011
Q ss_pred chHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeeccc------ce----------eecCCCCeEE
Q psy4734 251 GILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLING------EI----------IKMSNTMNLI 312 (367)
Q Consensus 251 Gil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~g------e~----------i~l~~~~~~i 312 (367)
|.... +...-+..+..-+++| +.+++.-.+.|-.+|++.+.. +.+| +. -..+..+++|
T Consensus 162 g~~~~---~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI 237 (531)
T TIGR02902 162 GIPQP---KPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVF-LDSAYYNSENPNIPSHIHDIFQNGLPADFRLI 237 (531)
T ss_pred Ccccc---cCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeee-eccccccccCcccccchhhhcccCcccceEEE
Confidence 11000 0000012234688888 445666666666666654433 2211 11 1246678888
Q ss_pred EecC-CCCccCcchhhceeeEEeccc
Q psy4734 313 FECE-NLEFASPATVSRVGMIYFELK 337 (367)
Q Consensus 313 fE~~-~l~~asPatvsRcg~v~~~~~ 337 (367)
.-|+ ++....||..|||-.+++.+-
T Consensus 238 ~ATt~~p~~L~paLrsR~~~I~f~pL 263 (531)
T TIGR02902 238 GATTRNPEEIPPALRSRCVEIFFRPL 263 (531)
T ss_pred EEecCCcccCChHHhhhhheeeCCCC
Confidence 8766 477899999999999998764
No 107
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.24 E-value=0.03 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.0
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|++||||||..+.|++++..
T Consensus 6 IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 6 IVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 456799999999999999998864
No 108
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.23 E-value=0.026 Score=57.41 Aligned_cols=147 Identities=13% Similarity=0.176 Sum_probs=74.0
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
.++++.||+|+|||++.+.++..+..... ......++.... ..++.+.+ .++....+.....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~---------~~~v~yi~~~~~-~~~~~~~~-------~~~~~~~~~~~~~- 210 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNP---------NAKVVYVTSEKF-TNDFVNAL-------RNNTMEEFKEKYR- 210 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCC---------CCeEEEEEHHHH-HHHHHHHH-------HcCcHHHHHHHHh-
Confidence 45888999999999999998876643210 112222333222 12222222 1122222222221
Q ss_pred CCCCCceEEEEcCCCCh---------HhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhcee---
Q psy4734 263 STTPDRKWIMFDGPIDA---------VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG--- 330 (367)
Q Consensus 263 ~~~~~~~wivfDG~~d~---------~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg--- 330 (367)
....+++| +++. .....+|.+.+.++.+.+++.- -..++....|+..||+.
T Consensus 211 ----~~dlLiiD-Di~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~------------~p~~l~~l~~~l~SRl~~gl 273 (450)
T PRK00149 211 ----SVDVLLID-DIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR------------PPKELPGLEERLRSRFEWGL 273 (450)
T ss_pred ----cCCEEEEe-hhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC------------CHHHHHHHHHHHHhHhcCCe
Confidence 24688998 4432 2233444444444333332211 01234446688999994
Q ss_pred eEEecccCCc-hHHHHHHHHHHhhhhhhHHHHhhh
Q psy4734 331 MIYFELKCIS-WTTFFLSYQNELKEKLNEEQFEMA 364 (367)
Q Consensus 331 ~v~~~~~~~~-~~~~~~swl~~~~~~~~~~~~~~~ 364 (367)
++.+.+-+.. -..++...+...+..++++.-+++
T Consensus 274 ~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~i 308 (450)
T PRK00149 274 TVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFI 308 (450)
T ss_pred eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5667765543 444555555554445666654443
No 109
>KOG0730|consensus
Probab=95.21 E-value=0.041 Score=57.31 Aligned_cols=174 Identities=19% Similarity=0.266 Sum_probs=94.0
Q ss_pred CCCceeecc---hHHHHHHHHhcC-CcccchhhHHHH-HhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccc
Q psy4734 146 FFPRFFFLS---NDELLEILSETK-DPLRVQPHLKKI-FEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEF 220 (367)
Q Consensus 146 ~fprf~f~s---~~~Ll~ils~~~-~~~~lq~~l~k~-~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~ 220 (367)
..|.+.|-+ .+++...+.++- +|.+.-..+.++ +.-..||++.||||||||++.+.++..-+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~------------- 493 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG------------- 493 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc-------------
Confidence 455555532 445555565542 333322234444 36778999999999999999887764321
Q ss_pred eeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhcCCCCCceEEEEcCCCChHhhhh-----------hhhcc
Q psy4734 221 KTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFDGPIDAVWIEN-----------MNTVL 289 (367)
Q Consensus 221 ~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~~~~~~~wivfDG~~d~~wie~-----------lnsvl 289 (367)
+|--++.-.|||--|--+ .+-.+..++|++.. ..+..|.|| .+|+.-.+. ||++
T Consensus 494 ------~nFlsvkgpEL~sk~vGe----SEr~ir~iF~kAR~---~aP~IiFfD-EiDsi~~~R~g~~~~v~~RVlsqL- 558 (693)
T KOG0730|consen 494 ------MNFLSVKGPELFSKYVGE----SERAIREVFRKARQ---VAPCIIFFD-EIDALAGSRGGSSSGVTDRVLSQL- 558 (693)
T ss_pred ------CCeeeccCHHHHHHhcCc----hHHHHHHHHHHHhh---cCCeEEehh-hHHhHhhccCCCccchHHHHHHHH-
Confidence 333445545554433211 12245556666643 334888888 665554443 2322
Q ss_pred CCCCceeecccceeecCCCCeEEEecCCCCccCcchhh--c-eeeEEecccCCchH-HHHHHHHHHhhh
Q psy4734 290 DDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS--R-VGMIYFELKCISWT-TFFLSYQNELKE 354 (367)
Q Consensus 290 ddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvs--R-cg~v~~~~~~~~~~-~~~~swl~~~~~ 354 (367)
|+--+|= .-..++-+|=-|.=-..+.||.+. | =-+||+...+..-+ .+++-..++.|.
T Consensus 559 -----LtEmDG~--e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~ 620 (693)
T KOG0730|consen 559 -----LTEMDGL--EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF 620 (693)
T ss_pred -----HHHcccc--cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC
Confidence 2222231 111334333334334556777775 3 24899998775543 455656665554
No 110
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.10 E-value=0.023 Score=56.87 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=73.2
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
.++++.|++|+|||.+.+.++..+..... +..|. .++..... .++.+. ..++....+.+...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~-------~~~v~--yi~~~~~~-~~~~~~-------~~~~~~~~~~~~~~- 198 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNP-------NAKVV--YVSSEKFT-NDFVNA-------LRNNKMEEFKEKYR- 198 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCC-------CCcEE--EEEHHHHH-HHHHHH-------HHcCCHHHHHHHHH-
Confidence 45788999999999999988876643210 11222 23222111 111111 12222223332221
Q ss_pred CCCCCceEEEEcCCCCh-----H----hhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhcee---
Q psy4734 263 STTPDRKWIMFDGPIDA-----V----WIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG--- 330 (367)
Q Consensus 263 ~~~~~~~wivfDG~~d~-----~----wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg--- 330 (367)
....+++| +++. . ....+|.+.+.++.+.+++.- ...++....|...||+.
T Consensus 199 ----~~dlLiiD-Di~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~------------~p~~l~~l~~~l~SRl~~g~ 261 (405)
T TIGR00362 199 ----SVDLLLID-DIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR------------PPKELPGLEERLRSRFEWGL 261 (405)
T ss_pred ----hCCEEEEe-hhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC------------CHHHHhhhhhhhhhhccCCe
Confidence 23689998 4432 1 223344444444333332211 12235556788999995
Q ss_pred eEEecccCCc-hHHHHHHHHHHhhhhhhHHHHhh
Q psy4734 331 MIYFELKCIS-WTTFFLSYQNELKEKLNEEQFEM 363 (367)
Q Consensus 331 ~v~~~~~~~~-~~~~~~swl~~~~~~~~~~~~~~ 363 (367)
.+.+.+-+.. -..++...+......+.++.-++
T Consensus 262 ~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ 295 (405)
T TIGR00362 262 VVDIEPPDLETRLAILQKKAEEEGLELPDEVLEF 295 (405)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4788776644 33455555555555555554333
No 111
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.09 E-value=0.059 Score=56.69 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=41.1
Q ss_pred CCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEeccc
Q psy4734 266 PDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 337 (367)
Q Consensus 266 ~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~ 337 (367)
...+-+|+|. +|..--+.+|.+|. .-| ..+++..|||-++++....|...|||-.+.+.+-
T Consensus 119 ~~~kVvIIDE-a~~L~~~a~naLLk--------~LE--epp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l 179 (585)
T PRK14950 119 ARYKVYIIDE-VHMLSTAAFNALLK--------TLE--EPPPHAIFILATTEVHKVPATILSRCQRFDFHRH 179 (585)
T ss_pred CCeEEEEEeC-hHhCCHHHHHHHHH--------HHh--cCCCCeEEEEEeCChhhhhHHHHhccceeeCCCC
Confidence 4578999994 33332344444321 011 1245777889999999998999999999998754
No 112
>KOG0733|consensus
Probab=95.05 E-value=0.031 Score=57.81 Aligned_cols=73 Identities=23% Similarity=0.308 Sum_probs=44.5
Q ss_pred HhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHH
Q psy4734 179 FEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFR 258 (367)
Q Consensus 179 ~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r 258 (367)
+....||++.||||||||.+.+..|.-- . +|--++--.||+.-|= |=-.+++|
T Consensus 542 i~~PsGvLL~GPPGCGKTLlAKAVANEa--------------g-----~NFisVKGPELlNkYV--------GESErAVR 594 (802)
T KOG0733|consen 542 IDAPSGVLLCGPPGCGKTLLAKAVANEA--------------G-----ANFISVKGPELLNKYV--------GESERAVR 594 (802)
T ss_pred CCCCCceEEeCCCCccHHHHHHHHhhhc--------------c-----CceEeecCHHHHHHHh--------hhHHHHHH
Confidence 3567899999999999998877654211 1 2323344445554442 22345666
Q ss_pred HHhcC-CCCCceEEEEcCCCCh
Q psy4734 259 EMAVS-TTPDRKWIMFDGPIDA 279 (367)
Q Consensus 259 ~~~~~-~~~~~~wivfDG~~d~ 279 (367)
+.... -...+.-|+|| .+|+
T Consensus 595 ~vFqRAR~saPCVIFFD-EiDa 615 (802)
T KOG0733|consen 595 QVFQRARASAPCVIFFD-EIDA 615 (802)
T ss_pred HHHHHhhcCCCeEEEec-chhh
Confidence 65442 34668999999 4443
No 113
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.05 E-value=0.025 Score=51.21 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|+|||||||..+.|++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5778999999999999888654
No 114
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.01 E-value=0.058 Score=58.99 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=56.7
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEe--CCCCCccccccceecccccccc-cchHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKII--NPKSITMGQLYGEFDSASHEWR-DGILAKTFREM 260 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~i--npka~t~~~l~G~~d~~~~~W~-dGil~~~~r~~ 260 (367)
.++|.||+|+|||++.+.|++.+-.-. ..+....+ ++...+...|.|.. |.-.... .|.++..+|+.
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~---------~~~~~~d~s~~~~~~~~~~l~g~~-~gyvg~~~~~~l~~~~~~~ 610 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSE---------DAMIRLDMSEYMEKHTVSKLIGSP-PGYVGYNEGGQLTEAVRKK 610 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCc---------cceEEEEchhccccccHHHhcCCC-CcccCcCccchHHHHHHhC
Confidence 367899999999999999998763110 11111111 11122334455531 1011122 35677777653
Q ss_pred hcCCCCCceEEEEcCCCChHhhhhhh---hccCCCCceeecccceeecC
Q psy4734 261 AVSTTPDRKWIMFDGPIDAVWIENMN---TVLDDNKKLCLINGEIIKMS 306 (367)
Q Consensus 261 ~~~~~~~~~wivfDG~~d~~wie~ln---svlddn~~l~L~~ge~i~l~ 306 (367)
+..-++|| ++|..-.+..| .+|| +..++-+.|..+.+.
T Consensus 611 ------p~~VvllD-eieka~~~v~~~Llq~le-~g~~~d~~g~~v~~~ 651 (821)
T CHL00095 611 ------PYTVVLFD-EIEKAHPDIFNLLLQILD-DGRLTDSKGRTIDFK 651 (821)
T ss_pred ------CCeEEEEC-ChhhCCHHHHHHHHHHhc-cCceecCCCcEEecC
Confidence 34788999 55444444444 4444 445556666666654
No 115
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.97 E-value=0.01 Score=48.23 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=21.4
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
..+++.||+|+||||+.+.++..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 45788999999999999988776643
No 116
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.97 E-value=0.048 Score=54.76 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=21.6
Q ss_pred hhhheeccccCCCchhhHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...+++.||||+|||++.+.|++.+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999998765
No 117
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.93 E-value=0.067 Score=53.69 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=21.6
Q ss_pred hhhheeccccCCCchhhHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...+++.||||+|||++.+.|++.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc
Confidence 3568899999999999999998665
No 118
>PRK08118 topology modulation protein; Reviewed
Probab=94.90 E-value=0.012 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=19.8
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-++++|++||||||+.+.|++.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999998888765
No 119
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.88 E-value=0.012 Score=49.32 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
++++|+|||||||..+.|++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 4678999999999999887655
No 120
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.78 E-value=0.018 Score=51.15 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=28.4
Q ss_pred chhhHHHHHhhhhhheeccccCCCchhhHHHHHHHH
Q psy4734 171 VQPHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 171 lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
....+..++.....+.++||+||||||+++.|...+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 334566677777778899999999999999877654
No 121
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.032 Score=59.70 Aligned_cols=113 Identities=23% Similarity=0.253 Sum_probs=67.5
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeC----CCCCccccccceecccc-cccccchHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIIN----PKSITMGQLYGEFDSAS-HEWRDGILAKTFR 258 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~in----pka~t~~~l~G~~d~~~-~~W~dGil~~~~r 258 (367)
+.+|.||+|.|||.+.+.|+..|-.-. . ....++ -...|+..|.|.- |.= +-=.-|.|+.++|
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e---------~--aliR~DMSEy~EkHsVSrLIGaP-PGYVGyeeGG~LTEaVR 590 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDE---------Q--ALIRIDMSEYMEKHSVSRLIGAP-PGYVGYEEGGQLTEAVR 590 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCC---------c--cceeechHHHHHHHHHHHHhCCC-CCCceeccccchhHhhh
Confidence 356799999999999999998874210 0 011111 1122344454431 000 0012578999998
Q ss_pred HHhcCCCCCceEEEEcCCC---ChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCC
Q psy4734 259 EMAVSTTPDRKWIMFDGPI---DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL 318 (367)
Q Consensus 259 ~~~~~~~~~~~wivfDG~~---d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l 318 (367)
+ .+..-|+|| .+ +|.-..-|-.|||| ..|+=+.|-.|-+.+.+ |+=|+|+
T Consensus 591 r------~PySViLlD-EIEKAHpdV~nilLQVlDd-GrLTD~~Gr~VdFrNti--IImTSN~ 643 (786)
T COG0542 591 R------KPYSVILLD-EIEKAHPDVFNLLLQVLDD-GRLTDGQGRTVDFRNTI--IIMTSNA 643 (786)
T ss_pred c------CCCeEEEec-hhhhcCHHHHHHHHHHhcC-CeeecCCCCEEecceeE--EEEeccc
Confidence 5 345688899 65 44444455556655 56788888888888774 4445553
No 122
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.74 E-value=0.018 Score=46.96 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=19.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
|++.|++||||||+.+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999885
No 123
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=94.70 E-value=0.047 Score=57.42 Aligned_cols=126 Identities=18% Similarity=0.210 Sum_probs=81.0
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceeccc----cc--ccccchHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSA----SH--EWRDGILAKT 256 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~----~~--~W~dGil~~~ 256 (367)
.+|++.|++|+|||++.+.+++.+... ..+..+.+ ..+.+.|+|.+|.. ++ .|..|++..+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~------------~pfv~i~~-~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A 83 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPI------------MPFVELPL-GVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA 83 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcC------------CCeEecCc-ccchhhcccchhhhhhhhcCcccCCCCCeeeC
Confidence 468899999999999999887755321 11233443 57788999997632 12 3555654321
Q ss_pred HHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCC----ccCcchhhcee
Q psy4734 257 FREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE----FASPATVSRVG 330 (367)
Q Consensus 257 ~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~----~asPatvsRcg 330 (367)
+.--+++| ..+++.-...|-.+|++..+-.-..|.....+..+++|- +++-. ...|+...|.+
T Consensus 84 ----------~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIA-t~np~e~~g~L~~~LldRf~ 152 (589)
T TIGR02031 84 ----------PRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIA-TYDPAEGGGGLPDHLLDRLA 152 (589)
T ss_pred ----------CCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEE-ecCCccccCCCCHHHHHhcc
Confidence 12345666 234566666666677665443334577788888888884 66643 47789999998
Q ss_pred eE
Q psy4734 331 MI 332 (367)
Q Consensus 331 ~v 332 (367)
+.
T Consensus 153 l~ 154 (589)
T TIGR02031 153 LH 154 (589)
T ss_pred Ce
Confidence 83
No 124
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.66 E-value=0.036 Score=50.79 Aligned_cols=144 Identities=21% Similarity=0.234 Sum_probs=69.7
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhcC
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 263 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~ 263 (367)
.+.+.|++|+|||.+++.++..+..... +.+|.|. +..++...+.. .-.+|-...+....
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-------~~~v~y~-------~~~~f~~~~~~---~~~~~~~~~~~~~~--- 95 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHP-------GKRVVYL-------SAEEFIREFAD---ALRDGEIEEFKDRL--- 95 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCT-------TS-EEEE-------EHHHHHHHHHH---HHHTTSHHHHHHHH---
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccc-------cccceee-------cHHHHHHHHHH---HHHcccchhhhhhh---
Confidence 4788899999999998888776654321 1234332 22222222110 01112333333333
Q ss_pred CCCCceEEEEcCCCC-----hHhhhhh----hhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhcee---e
Q psy4734 264 TTPDRKWIMFDGPID-----AVWIENM----NTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG---M 331 (367)
Q Consensus 264 ~~~~~~wivfDG~~d-----~~wie~l----nsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg---~ 331 (367)
.....+++| +++ +.|-|.| |...+.++.+-+++.. ...++....|-.+||.+ .
T Consensus 96 --~~~DlL~iD-Di~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~------------~P~~l~~~~~~L~SRl~~Gl~ 160 (219)
T PF00308_consen 96 --RSADLLIID-DIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR------------PPSELSGLLPDLRSRLSWGLV 160 (219)
T ss_dssp --CTSSEEEEE-TGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-------------TTTTTTS-HHHHHHHHCSEE
T ss_pred --hcCCEEEEe-cchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC------------CCccccccChhhhhhHhhcch
Confidence 245899999 332 3455555 4444455555444322 22356677898888864 3
Q ss_pred EEecccCCc-hHHHHHHHHHHhhhhhhHHHHh
Q psy4734 332 IYFELKCIS-WTTFFLSYQNELKEKLNEEQFE 362 (367)
Q Consensus 332 v~~~~~~~~-~~~~~~swl~~~~~~~~~~~~~ 362 (367)
+-+.+.+.. -..++..........++++..+
T Consensus 161 ~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~ 192 (219)
T PF00308_consen 161 VELQPPDDEDRRRILQKKAKERGIELPEEVIE 192 (219)
T ss_dssp EEE----HHHHHHHHHHHHHHTT--S-HHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 445544332 2334444554444445555433
No 125
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.62 E-value=0.042 Score=53.93 Aligned_cols=144 Identities=21% Similarity=0.261 Sum_probs=76.0
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhc-c------c--------------cccc-----eeEEEEeCCCCCcccc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKS-A------T--------------MKEF-----KTGYKIINPKSITMGQ 236 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~-~------~--------------~~~~-----~v~~~~inpka~t~~~ 236 (367)
.|+++.|++|+|||++.+.+.+.+........ + . .+.. ++.+.. =|-..+-+.
T Consensus 39 ~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lp~~~ted~ 117 (350)
T CHL00081 39 GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVD-LPLGATEDR 117 (350)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcccccccceecccccee-cCCCCchhh
Confidence 67999999999999999999877754321100 0 0 0000 111111 145567889
Q ss_pred ccceecccccccccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEe
Q psy4734 237 LYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE 314 (367)
Q Consensus 237 l~G~~d~~~~~W~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE 314 (367)
|+|.+|.+. .+..|.. .++.+. -...+.--+++| ..+++.--..|-.++++...-.-..|...+.+..+.++-
T Consensus 118 l~G~iD~~~-al~~g~~--~~~~Gl-L~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfivia- 192 (350)
T CHL00081 118 VCGTIDIEK-ALTEGVK--AFEPGL-LAKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVG- 192 (350)
T ss_pred ccCcccHHH-HhhcCcc--cccCCe-eeecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEe-
Confidence 999998753 4544421 111110 011233567777 224444444444445442211112355556665554444
Q ss_pred cCCCC--ccCcchhhceeeE
Q psy4734 315 CENLE--FASPATVSRVGMI 332 (367)
Q Consensus 315 ~~~l~--~asPatvsRcg~v 332 (367)
+.+.. ...|+...|.++.
T Consensus 193 T~np~eg~l~~~LldRf~l~ 212 (350)
T CHL00081 193 SGNPEEGELRPQLLDRFGMH 212 (350)
T ss_pred ccCcccCCCCHHHHHHhCce
Confidence 44432 3788889998864
No 126
>KOG0733|consensus
Probab=94.57 E-value=0.019 Score=59.24 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=21.7
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-..||++.||||||||.+.+.++..+
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhc
Confidence 34789999999999999988877554
No 127
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.52 E-value=0.03 Score=53.88 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=30.9
Q ss_pred chhhHHHHHhhhhhheeccccCCCchhhHHHHHHHHH
Q psy4734 171 VQPHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 171 lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
....|.++...+..+++.|++||||||+++.|...+.
T Consensus 121 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 121 QRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456888888888899999999999999998876654
No 128
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.52 E-value=0.017 Score=56.47 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred hhhh--heeccccCCCchhhHHHHHHH
Q psy4734 181 VRHG--LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 181 ~~~~--v~~~g~~gsGKTt~~~~L~~a 205 (367)
...| +.+.|||||||||+++++|.-
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444 667899999999999998754
No 129
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.51 E-value=0.013 Score=53.14 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=66.7
Q ss_pred HhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhc--c------c---cccceeEE--EEeCCCCCccccccceecccc
Q psy4734 179 FEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS--A------T---MKEFKTGY--KIINPKSITMGQLYGEFDSAS 245 (367)
Q Consensus 179 ~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~--~------~---~~~~~v~~--~~inpka~t~~~l~G~~d~~~ 245 (367)
-.+.|++++.||+|+|||++.+.+...|-.+...+. . . .....+.. .+--+.+.|...|.|.-
T Consensus 19 AaG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg---- 94 (206)
T PF01078_consen 19 AAGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGG---- 94 (206)
T ss_dssp HHCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEG----
T ss_pred HcCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCC----
Confidence 346799999999999999999988876655543221 0 0 00001110 11123456667777752
Q ss_pred cccccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEE
Q psy4734 246 HEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLI 312 (367)
Q Consensus 246 ~~W~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~i 312 (367)
...+-|.++.+ ++=.+.+| -..+..-+|.|...|++.++..--.|..+..|-++-++
T Consensus 95 ~~~~PGeislA----------h~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv 153 (206)
T PF01078_consen 95 RPPRPGEISLA----------HRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLV 153 (206)
T ss_dssp GGEEE-CGGGG----------TTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEE
T ss_pred cCCCcCHHHHh----------cCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEE
Confidence 13445544332 33567888 56789999999999988766555667778888776555
No 130
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.42 E-value=0.12 Score=56.86 Aligned_cols=116 Identities=23% Similarity=0.263 Sum_probs=63.9
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeC--CCCCccccccceeccccccc-ccchHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIIN--PKSITMGQLYGEFDSASHEW-RDGILAKTFREM 260 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~in--pka~t~~~l~G~~d~~~~~W-~dGil~~~~r~~ 260 (367)
.++|.||+|+|||++.+.|++.+..- +.++....+. ....+...++|.. |.-... ..|.++..+|+.
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~---------~~~~i~~d~s~~~~~~~~~~l~g~~-~g~~g~~~~g~l~~~v~~~ 666 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDD---------EDAMVRIDMSEYMEKHSVARLIGAP-PGYVGYEEGGQLTEAVRRK 666 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCC---------CCcEEEEechhhcccchHHHhcCCC-CCccCcccccHHHHHHHcC
Confidence 47789999999999999999876321 1122221111 1222334455532 110111 236777777642
Q ss_pred hcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCC
Q psy4734 261 AVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL 318 (367)
Q Consensus 261 ~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l 318 (367)
...-++|| +..++.-...|-.+||+. .++-+.|..+.+.+. +|+=|+|+
T Consensus 667 ------p~~vlllDeieka~~~v~~~Ll~~l~~g-~l~d~~g~~vd~rn~--iiI~TSn~ 717 (852)
T TIGR03346 667 ------PYSVVLFDEVEKAHPDVFNVLLQVLDDG-RLTDGQGRTVDFRNT--VIIMTSNL 717 (852)
T ss_pred ------CCcEEEEeccccCCHHHHHHHHHHHhcC-ceecCCCeEEecCCc--EEEEeCCc
Confidence 33689999 334555555555566554 455666776766542 34445555
No 131
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.34 E-value=0.02 Score=55.72 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.++||+||||||+++++|.-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 678899999999999998753
No 132
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.30 E-value=0.022 Score=51.84 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.7
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-+.++||+||||||++++++
T Consensus 29 evv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 336788999999999999865
No 133
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.28 E-value=0.22 Score=48.74 Aligned_cols=26 Identities=19% Similarity=0.357 Sum_probs=21.9
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
..+++.||+|+|||++.+.+.+.+..
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45788899999999999988877754
No 134
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.27 E-value=0.11 Score=52.44 Aligned_cols=94 Identities=23% Similarity=0.282 Sum_probs=53.2
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC-ccccc------cceecccccccccchHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQL------YGEFDSASHEWRDGILAK 255 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~-t~~~l------~G~~d~~~~~W~dGil~~ 255 (367)
.-++|+||+|+||||++..|+..+.... .+.+|.+...+|-.. ...+| .|. |....-...-+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r~~a~eqL~~~a~~~~v--p~~~~~~~~~l~~ 292 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYRIGAVEQLKTYAKIMGI--PVEVVYDPKELAK 292 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccHHHHHHHHHHHHHHhCC--ceEccCCHHhHHH
Confidence 3578899999999999988887765221 123566655555321 11122 221 0000011112334
Q ss_pred HHHHHhcCCCCCceEEEEcCC----CChHhhhhhhhccC
Q psy4734 256 TFREMAVSTTPDRKWIMFDGP----IDAVWIENMNTVLD 290 (367)
Q Consensus 256 ~~r~~~~~~~~~~~wivfDG~----~d~~wie~lnsvld 290 (367)
.+++. ...++|++|.+ .|..-++.|..+++
T Consensus 293 ~l~~~-----~~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 293 ALEQL-----RDCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred HHHHh-----CCCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 44433 24699999954 57777888887776
No 135
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.27 E-value=0.03 Score=41.41 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++|+||||+.+.|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999999998877
No 136
>PHA02774 E1; Provisional
Probab=94.26 E-value=0.17 Score=52.56 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=20.8
Q ss_pred hhhheeccccCCCchhhHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
+..+.|.||||+|||.....|.+.+
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L 458 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFL 458 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999987777665
No 137
>PLN02842 nucleotide kinase
Probab=94.19 E-value=0.098 Score=53.63 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.8
Q ss_pred eeccccCCCchhhHHHHHHHH
Q psy4734 186 MVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 186 ~~~g~~gsGKTt~~~~L~~al 206 (367)
|+.|++||||||..+.|++.+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~l 21 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKF 21 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHh
Confidence 578999999999999998766
No 138
>PF13173 AAA_14: AAA domain
Probab=94.15 E-value=0.069 Score=44.31 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=62.2
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
.-+++.||.++||||+++-+++.+. .. .++ ..+|-..... ....+.-+...+++..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--~~--------~~~--~yi~~~~~~~-----------~~~~~~~~~~~~~~~~- 58 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--PP--------ENI--LYINFDDPRD-----------RRLADPDLLEYFLELI- 58 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--cc--------ccc--eeeccCCHHH-----------HHHhhhhhHHHHHHhh-
Confidence 4567889999999999888776543 00 011 1122211110 1111100333343331
Q ss_pred CCCCCceEEEEc-CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCC----ccCcchhhceeeEEeccc
Q psy4734 263 STTPDRKWIMFD-GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE----FASPATVSRVGMIYFELK 337 (367)
Q Consensus 263 ~~~~~~~wivfD-G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~----~asPatvsRcg~v~~~~~ 337 (367)
..+..++++| -.--+.|.+.+..+.|+. +++++++=.++.. ..+-....|+..+.|.|-
T Consensus 59 --~~~~~~i~iDEiq~~~~~~~~lk~l~d~~--------------~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Pl 122 (128)
T PF13173_consen 59 --KPGKKYIFIDEIQYLPDWEDALKFLVDNG--------------PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPL 122 (128)
T ss_pred --ccCCcEEEEehhhhhccHHHHHHHHHHhc--------------cCceEEEEccchHHHhhcccccCCCeEEEEEECCC
Confidence 1267899999 233467999999988853 1222333222221 234456678888888775
Q ss_pred C
Q psy4734 338 C 338 (367)
Q Consensus 338 ~ 338 (367)
.
T Consensus 123 s 123 (128)
T PF13173_consen 123 S 123 (128)
T ss_pred C
Confidence 4
No 139
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.15 E-value=0.024 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=19.5
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-|.++|||||||||++++++.-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37788999999999999987544
No 140
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.03 E-value=0.077 Score=55.11 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=73.5
Q ss_pred HHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceeccc----ccccc
Q psy4734 178 IFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA----SHEWR 249 (367)
Q Consensus 178 ~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~~----~~~W~ 249 (367)
.-.....|++.|++|+||+.+.+.+...+....+... . ...-....+|+.+++ -.+|||+-+.. ...-+
T Consensus 238 ~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S--~-r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~ 314 (538)
T PRK15424 238 YARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQ--G-KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 314 (538)
T ss_pred HhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccC--c-cCCCCeEEeecccCChhhHHHHhcCCccccccCcccccc
Confidence 3445667999999999999998887765321111000 0 011234567888775 35678863210 01122
Q ss_pred cchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecC
Q psy4734 250 DGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 316 (367)
Q Consensus 250 dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~ 316 (367)
.|.+. ..+.--+++| |.+++..-..|-.+|++.....+.+.. .++-++|+|+-++
T Consensus 315 ~Gl~e----------~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~--~~~~dvRiIaat~ 371 (538)
T PRK15424 315 AGLFE----------IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ--PVPVDVRVISATH 371 (538)
T ss_pred CCchh----------ccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCc--eeccceEEEEecC
Confidence 33321 1122358888 567777777888888887766664444 4456789998763
No 141
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.00 E-value=0.051 Score=52.77 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=29.9
Q ss_pred hhHHHHHhhhhhheeccccCCCchhhHHHHHHHHH
Q psy4734 173 PHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 173 ~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..+..+...+..+++.|++||||||+++.|...+.
T Consensus 135 ~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 135 SVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 45778888888899999999999999998877663
No 142
>PRK03839 putative kinase; Provisional
Probab=94.00 E-value=0.032 Score=49.12 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.3
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
++++|+|||||||+.+.|++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67889999999999999988763
No 143
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.98 E-value=0.035 Score=57.33 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=25.5
Q ss_pred hhhHHHHHhhh---hhheeccccCCCchhhHHHHHHHHH
Q psy4734 172 QPHLKKIFEVR---HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 172 q~~l~k~~~~~---~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..++...+... .-+++.||+||||||++++|++.++
T Consensus 32 ~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 32 RSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34555544332 2255679999999999999998774
No 144
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=93.96 E-value=0.093 Score=54.55 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=24.0
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
+.-+.|+||+|+|||++.+.|++++...
T Consensus 103 ~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 103 KQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 3446788999999999999999998765
No 145
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.94 E-value=0.21 Score=48.99 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=24.4
Q ss_pred hHHHHHhhhhhh-eeccccCCCchhhHHHHHHHHH
Q psy4734 174 HLKKIFEVRHGL-MVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 174 ~l~k~~~~~~~v-~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.+.++.....|+ ++.||+||||||+++.+...+.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 455555555554 5679999999999998776553
No 146
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.90 E-value=0.031 Score=48.55 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=19.7
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|+|||||||+.+.|++.++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 45679999999999999998763
No 147
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.86 E-value=0.032 Score=48.16 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||+.+.|+..+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999988776
No 148
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.85 E-value=0.036 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.7
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++||||||+.+.|++.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999998765
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.82 E-value=0.13 Score=56.36 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.1
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..++++||||+|||++++.|+..+.
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHh
Confidence 5688999999999999999988764
No 150
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.81 E-value=0.033 Score=48.87 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=19.8
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++||+||||||+.+.|+..+.
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999887753
No 151
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.76 E-value=0.019 Score=54.51 Aligned_cols=41 Identities=32% Similarity=0.349 Sum_probs=29.6
Q ss_pred HHHhcCCcccchhhHHHHHhhhhhheeccccCCCchhhHHH
Q psy4734 161 ILSETKDPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQT 201 (367)
Q Consensus 161 ils~~~~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~ 201 (367)
++-.+.+-.+....+..++...+.++++||+|+|||++++.
T Consensus 12 ~~VpT~dt~r~~~ll~~l~~~~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 12 ILVPTVDTVRYSYLLDLLLSNGRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp -T---HHHHHHHHHHHHHHHCTEEEEEESSTTSSHHHHHHH
T ss_pred EEeCcHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHHHHh
Confidence 33344444555556777888999999999999999999765
No 152
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.74 E-value=0.031 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||+.+.|+..+
T Consensus 5 i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 5678999999999999986543
No 153
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.74 E-value=0.051 Score=51.85 Aligned_cols=37 Identities=27% Similarity=0.507 Sum_probs=28.2
Q ss_pred hhHHHHHhhhhhheec-cccCCCchhhHHHHHHHHHHH
Q psy4734 173 PHLKKIFEVRHGLMVV-GESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 173 ~~l~k~~~~~~~v~~~-g~~gsGKTt~~~~L~~al~~~ 209 (367)
+-+.++.+...|+++| ||+||||||++..+-..+++-
T Consensus 115 ~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~ 152 (353)
T COG2805 115 PIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKH 152 (353)
T ss_pred HHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhcc
Confidence 4466677888897776 999999999977666665543
No 154
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.74 E-value=0.039 Score=46.77 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
++++|++||||||+.+.|++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998876
No 155
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.67 E-value=0.048 Score=50.65 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=25.0
Q ss_pred eccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc
Q psy4734 187 VVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT 233 (367)
Q Consensus 187 ~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t 233 (367)
++||+||||||..+.+.+.+.... .++.+..++|.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~---------~~~~~vNLDPa~~~ 38 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG---------RDVYIVNLDPAVEN 38 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT----------S-EEEEE--TT-S-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc---------CCceEEEcchHhcc
Confidence 469999999999998888775432 35667778888764
No 156
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.67 E-value=0.033 Score=48.97 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
++++|+|||||||..+.|++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999888765
No 157
>PRK14530 adenylate kinase; Provisional
Probab=93.63 E-value=0.04 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.9
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.++++|+|||||||+.+.|++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 367889999999999999988763
No 158
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.62 E-value=0.039 Score=54.07 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=29.7
Q ss_pred chhhHHHHHhhhhhheeccccCCCchhhHHHHHHHH
Q psy4734 171 VQPHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 171 lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
+...+..+...+..+++.|++||||||+++.|...+
T Consensus 151 ~~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 151 LEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HHHHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc
Confidence 344577778888889999999999999999887655
No 159
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.62 E-value=0.046 Score=53.84 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=66.7
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 260 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~ 260 (367)
...++.+.||||||||.+.+.+++.++ +++-.++.++|++.+=-++ .-.+-.+++.+
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg-------------------~~~i~vsa~eL~sk~vGEs----Ek~IR~~F~~A 203 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMG-------------------IEPIVMSAGELESENAGEP----GKLIRQRYREA 203 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcC-------------------CCeEEEEHHHhhcCcCCcH----HHHHHHHHHHH
Confidence 445677889999999999998887653 1223345566665441111 11334444444
Q ss_pred hcC--CCCCceEEEEcCCCChHhh---------------hhhhhccCCCCceeecccc-eeecCCCCeEEEecCCCCccC
Q psy4734 261 AVS--TTPDRKWIMFDGPIDAVWI---------------ENMNTVLDDNKKLCLINGE-IIKMSNTMNLIFECENLEFAS 322 (367)
Q Consensus 261 ~~~--~~~~~~wivfDG~~d~~wi---------------e~lnsvlddn~~l~L~~ge-~i~l~~~~~~ifE~~~l~~as 322 (367)
... ....+.-|++| ++|+.-- ..|-+++|.-....+..-- -..-.+.+.+|.=+.+....-
T Consensus 204 ~~~a~~~~aPcVLFID-EIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LD 282 (413)
T PLN00020 204 ADIIKKKGKMSCLFIN-DLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLY 282 (413)
T ss_pred HHHhhccCCCeEEEEe-hhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCC
Confidence 332 23467888888 4443211 1111223332222221000 001234566777777788888
Q ss_pred cchhh--ceee
Q psy4734 323 PATVS--RVGM 331 (367)
Q Consensus 323 Patvs--Rcg~ 331 (367)
||.+- |.--
T Consensus 283 pALlRpGRfDk 293 (413)
T PLN00020 283 APLIRDGRMEK 293 (413)
T ss_pred HhHcCCCCCCc
Confidence 88775 5433
No 160
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.58 E-value=0.11 Score=55.11 Aligned_cols=119 Identities=12% Similarity=0.095 Sum_probs=69.5
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceeccccccccc
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWRD 250 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~~~~~W~d 250 (367)
+.+.......|++.|++|+||+++.+.+..... .. .-....+|+.+++ ..+|||+.......-.-
T Consensus 341 ~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~----r~-------~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~ 409 (638)
T PRK11388 341 GRQAAKSSFPVLLCGEEGVGKALLAQAIHNESE----RA-------AGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRL 409 (638)
T ss_pred HHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCC----cc-------CCCeEEEECCCCChHHHHHHhcCCCCcCccCCCC
Confidence 444455667799999999999999877654321 10 1134567888876 35789976322111122
Q ss_pred chHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecC
Q psy4734 251 GILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 316 (367)
Q Consensus 251 Gil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~ 316 (367)
|.+. . ...--+++| +.++..--..|-.+|++.....+.+... .+-.+|+|+-++
T Consensus 410 g~~~----~------a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~--~~~~~riI~~t~ 465 (638)
T PRK11388 410 SKFE----L------AHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRL--IPVDVRVIATTT 465 (638)
T ss_pred Ccee----E------CCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCce--EEeeEEEEEecc
Confidence 2211 1 112357888 4456666667777777666655543333 344678888654
No 161
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=93.53 E-value=0.079 Score=54.54 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=82.0
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhc--c----c-----cccceeEEE-EeCCC-CCcccccccee
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS--A----T-----MKEFKTGYK-IINPK-SITMGQLYGEF 241 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~--~----~-----~~~~~v~~~-~inpk-a~t~~~l~G~~ 241 (367)
+.-.....+.+++.||+|+|||++.+.+...+..+..... . + .....+... ...|. +.+...++|.-
T Consensus 204 l~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg 283 (499)
T TIGR00368 204 LEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGG 283 (499)
T ss_pred hhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCc
Confidence 3334456677999999999999999988765433221100 0 0 000000000 01111 22344444421
Q ss_pred cccccccccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCC--
Q psy4734 242 DSASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-- 317 (367)
Q Consensus 242 d~~~~~W~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~-- 317 (367)
...+.|.++. .+.-.+++| -.++..-.+.|...|++.....-..|..+..+.++++|.-++.
T Consensus 284 ----~~~~pG~i~l----------A~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcp 349 (499)
T TIGR00368 284 ----PIPLPGEISL----------AHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCP 349 (499)
T ss_pred ----cccchhhhhc----------cCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcc
Confidence 1123443321 122467778 3456777888888887765433344555778889999988764
Q ss_pred ---------------------CCccCcchhhceeeEEe
Q psy4734 318 ---------------------LEFASPATVSRVGMIYF 334 (367)
Q Consensus 318 ---------------------l~~asPatvsRcg~v~~ 334 (367)
+...|+..+.|..+...
T Consensus 350 cg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~ 387 (499)
T TIGR00368 350 CGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVE 387 (499)
T ss_pred cCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEE
Confidence 22588888899998753
No 162
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.50 E-value=0.21 Score=49.32 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=23.9
Q ss_pred HHHHHhhhhh-heeccccCCCchhhHHHHHHHHH
Q psy4734 175 LKKIFEVRHG-LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 175 l~k~~~~~~~-v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.+....| +.++||+||||||+++.|...+.
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4444443445 56679999999999998877664
No 163
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.48 E-value=0.054 Score=39.43 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+.|++|+||||++..+.-++
T Consensus 26 tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6788999999999988876655
No 164
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=93.45 E-value=0.052 Score=55.01 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=75.4
Q ss_pred hHHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCcc----ccccceecccccccc
Q psy4734 174 HLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITM----GQLYGEFDSASHEWR 249 (367)
Q Consensus 174 ~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~----~~l~G~~d~~~~~W~ 249 (367)
.+.++-.+...|++.|++|+||-.+.+.+. ..+.+.. + ....+|+.|++- .||||.- .+.++
T Consensus 156 ~i~kvA~s~a~VLI~GESGtGKElvAr~IH----~~S~R~~----~---PFVavNcaAip~~l~ESELFGhe---kGAFT 221 (464)
T COG2204 156 LIAKVAPSDASVLITGESGTGKELVARAIH----QASPRAK----G---PFIAVNCAAIPENLLESELFGHE---KGAFT 221 (464)
T ss_pred HHHHHhCCCCCEEEECCCCCcHHHHHHHHH----hhCcccC----C---CceeeecccCCHHHHHHHhhccc---ccCcC
Confidence 355666778889999999999998866544 4443321 1 244589999983 4689952 22222
Q ss_pred cchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEec
Q psy4734 250 DGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 315 (367)
Q Consensus 250 dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~ 315 (367)
.+.- |+...-+..+.=-+++| |++...-=-.|-.+|.+...-.+.+...|++ .+|+|--|
T Consensus 222 GA~~----~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~v--dvRiIaaT 283 (464)
T COG2204 222 GAIT----RRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKV--DVRIIAAT 283 (464)
T ss_pred Cccc----ccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccce--eeEEEeec
Confidence 2210 11111122233457788 7777666667777888887778876665554 68888654
No 165
>PRK06851 hypothetical protein; Provisional
Probab=93.42 E-value=1.1 Score=44.38 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=29.7
Q ss_pred cCCcccchhhHHHHHhh-hhhheeccccCCCchhhHHHHHHHHH
Q psy4734 165 TKDPLRVQPHLKKIFEV-RHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 165 ~~~~~~lq~~l~k~~~~-~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.-|.....++..+.+. .+-+++.|+||+||||+++.++.++.
T Consensus 196 a~Tp~G~~s~~~~l~~~~~~~~~i~G~pG~GKstl~~~i~~~a~ 239 (367)
T PRK06851 196 AITPKGAVDFVPSLTEGVKNRYFLKGRPGTGKSTMLKKIAKAAE 239 (367)
T ss_pred ccCCCcHHhhHHhHhcccceEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 44445555555555544 34467789999999999998887664
No 166
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.40 E-value=0.047 Score=53.30 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=29.2
Q ss_pred hhhHHHHHhhhhhheeccccCCCchhhHHHHHHHH
Q psy4734 172 QPHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 172 q~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...+..+...+..++++|++||||||+++.|...+
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 34577778888889999999999999998877655
No 167
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.38 E-value=0.16 Score=44.16 Aligned_cols=25 Identities=36% Similarity=0.300 Sum_probs=20.5
Q ss_pred heeccccCCCchhhHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
++++|++|+||||+...++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4577999999999999888776543
No 168
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.37 E-value=0.048 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.1
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+.++|++||||||+.+.|++.+
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 357788999999999999998876
No 169
>PRK06762 hypothetical protein; Provisional
Probab=93.37 E-value=0.048 Score=47.19 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.3
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999988776
No 170
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=93.30 E-value=0.088 Score=55.89 Aligned_cols=138 Identities=21% Similarity=0.246 Sum_probs=79.8
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhh---------------------ccccccceeEEEEeCCCCCcccccccee
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKK---------------------SATMKEFKTGYKIINPKSITMGQLYGEF 241 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~---------------------~~~~~~~~v~~~~inpka~t~~~l~G~~ 241 (367)
.+++|.|++|+|||++.+.|+..+-.+.... ....+..+..+..+ |-..+.+.|+|..
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~-p~~~t~~~l~G~~ 104 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNL-PLGATEDRVVGSL 104 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeC-CCCCcHHHcCCcc
Confidence 5699999999999999999988763211000 00000001112222 4556778899987
Q ss_pred ccc----ccc--cccchHHHHHHHHhcCCCCCceEEEEcC--CCChHhhhhhhhccCCCCceeecccceeecCCCCeEEE
Q psy4734 242 DSA----SHE--WRDGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 313 (367)
Q Consensus 242 d~~----~~~--W~dGil~~~~r~~~~~~~~~~~wivfDG--~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~if 313 (367)
|.. +++ ..-|++.. .+.--+++|. .+++.-.+.|-.+|++...-.-..|.....+..+.+|.
T Consensus 105 d~~~~l~~g~~~~~~G~L~~----------A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIa 174 (633)
T TIGR02442 105 DIERALREGEKAFQPGLLAE----------AHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIG 174 (633)
T ss_pred cHHHHhhcCCeeecCcceee----------cCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEE
Confidence 642 112 22333321 1234677772 24555556666666665433334566677777776666
Q ss_pred ecCCCC--ccCcchhhceeeE
Q psy4734 314 ECENLE--FASPATVSRVGMI 332 (367)
Q Consensus 314 E~~~l~--~asPatvsRcg~v 332 (367)
+.|.. ..+|+...|+++.
T Consensus 175 -t~np~eg~l~~~L~dR~~l~ 194 (633)
T TIGR02442 175 -TMNPEEGDLRPQLLDRFGLC 194 (633)
T ss_pred -ecCCCCCCCCHHHHhhcceE
Confidence 55543 4678999999863
No 171
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.30 E-value=0.35 Score=46.28 Aligned_cols=71 Identities=11% Similarity=0.224 Sum_probs=50.7
Q ss_pred CCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccCCchHHH
Q psy4734 265 TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTTF 344 (367)
Q Consensus 265 ~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~~~~~~~ 344 (367)
...+|.+|+| +.|..-.+.-|++|- + =| ..|++..||+-+.+....-|..+|||-.+++.+. ...
T Consensus 102 ~~~~kV~II~-~ad~m~~~AaNaLLK---t-----LE--EPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~~----~~~ 166 (290)
T PRK07276 102 EGKQQVFIIK-DADKMHVNAANSLLK---V-----IE--EPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPKN----EAY 166 (290)
T ss_pred cCCcEEEEee-hhhhcCHHHHHHHHH---H-----hc--CCCCCeEEEEEECChhhCchHHHHcceeeeCCCc----HHH
Confidence 3457899999 666666666676651 1 11 2355677899999999999999999999999763 345
Q ss_pred HHHHHH
Q psy4734 345 FLSYQN 350 (367)
Q Consensus 345 ~~swl~ 350 (367)
+..|+.
T Consensus 167 ~~~~L~ 172 (290)
T PRK07276 167 LIQLLE 172 (290)
T ss_pred HHHHHH
Confidence 556664
No 172
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.27 E-value=0.042 Score=50.50 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=17.7
Q ss_pred hheeccccCCCchhhHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~ 204 (367)
-+.++||+||||||+++++..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 366789999999999988664
No 173
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.26 E-value=0.1 Score=54.18 Aligned_cols=155 Identities=16% Similarity=0.191 Sum_probs=87.8
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceecc----ccc
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDS----ASH 246 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~----~~~ 246 (367)
+.+.-.....|++.|++|+||+.+.+.+... +... .-....+|+.+++ -.+|||+-.. ...
T Consensus 228 i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~----S~r~-------~~pfv~inC~~l~e~lleseLFG~~~gaftga~~ 296 (526)
T TIGR02329 228 VRLYARSDATVLILGESGTGKELVAQAIHQL----SGRR-------DFPFVAINCGAIAESLLEAELFGYEEGAFTGARR 296 (526)
T ss_pred HHHHhCCCCcEEEECCCCcCHHHHHHHHHHh----cCcC-------CCCEEEeccccCChhHHHHHhcCCcccccccccc
Confidence 3344456678999999999999997776542 1111 1124568888775 3467886321 001
Q ss_pred ccccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCC-CCccCc
Q psy4734 247 EWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-LEFASP 323 (367)
Q Consensus 247 ~W~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~-l~~asP 323 (367)
.-..|++. . .+.--+++| |.++...-..|-.+|.+.....+.+.. ..+.++|+|+-++. |.....
T Consensus 297 ~~~~Gl~e----~------A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~--~~~~dvRiIaat~~~l~~~v~ 364 (526)
T TIGR02329 297 GGRTGLIE----A------AHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTE--PVPVDVRVVAATHCALTTAVQ 364 (526)
T ss_pred cccccchh----h------cCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCc--eeeecceEEeccCCCHHHHhh
Confidence 12223221 1 122348888 567777777888888887776665444 34557888886532 332211
Q ss_pred ------chhhc--eeeEEecccC---CchHHHHHHHHHHh
Q psy4734 324 ------ATVSR--VGMIYFELKC---ISWTTFFLSYQNEL 352 (367)
Q Consensus 324 ------atvsR--cg~v~~~~~~---~~~~~~~~swl~~~ 352 (367)
...-| +..|++.|-. =...+++..+++..
T Consensus 365 ~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~ 404 (526)
T TIGR02329 365 QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQA 404 (526)
T ss_pred hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHH
Confidence 22223 3455565521 12456666776654
No 174
>PRK13949 shikimate kinase; Provisional
Probab=93.26 E-value=0.039 Score=48.38 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.2
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.+.++|++|+||||+.+.|++.++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478899999999999999998763
No 175
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.21 E-value=0.052 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|+||+||||..+.|++.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999988874
No 176
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.21 E-value=0.084 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=19.4
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
++++|.|||||||..+.|++.+..
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHh
Confidence 567899999999999999988866
No 177
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.18 E-value=0.04 Score=46.79 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|++||||||+.+.|++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 4578999999999999988764
No 178
>PRK13947 shikimate kinase; Provisional
Probab=93.14 E-value=0.046 Score=47.47 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.2
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.+.++|++||||||+.+.|++.++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 477889999999999999998874
No 179
>KOG2028|consensus
Probab=93.11 E-value=0.1 Score=51.13 Aligned_cols=128 Identities=21% Similarity=0.248 Sum_probs=69.4
Q ss_pred HHHHHhh--hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccch
Q psy4734 175 LKKIFEV--RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI 252 (367)
Q Consensus 175 l~k~~~~--~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGi 252 (367)
+.+.++. ..++++-||||+||||+.+.++..-..- .|..|.-.|.+. .+.+ ..|+
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~-------------SyrfvelSAt~a---------~t~d-vR~i 209 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH-------------SYRFVELSATNA---------KTND-VRDI 209 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC-------------ceEEEEEecccc---------chHH-HHHH
Confidence 4444432 2446677999999999999877542110 122121111110 0111 1123
Q ss_pred HHHHHHHHhcCCCCCceEEE-EcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceee
Q psy4734 253 LAKTFREMAVSTTPDRKWIM-FDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGM 331 (367)
Q Consensus 253 l~~~~r~~~~~~~~~~~wiv-fDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~ 331 (367)
+...-+.. .-.+++-|+ +| =|..+|-.-.|.-+-.+-+|+++.+.-.. |-- --+.--|.+|||-+
T Consensus 210 fe~aq~~~---~l~krkTilFiD------EiHRFNksQQD~fLP~VE~G~I~lIGATT----ENP-SFqln~aLlSRC~V 275 (554)
T KOG2028|consen 210 FEQAQNEK---SLTKRKTILFID------EIHRFNKSQQDTFLPHVENGDITLIGATT----ENP-SFQLNAALLSRCRV 275 (554)
T ss_pred HHHHHHHH---hhhcceeEEEeH------HhhhhhhhhhhcccceeccCceEEEeccc----CCC-ccchhHHHHhccce
Confidence 33222221 123444444 45 35677887777767777888888775432 111 12334579999999
Q ss_pred EEecccCC
Q psy4734 332 IYFELKCI 339 (367)
Q Consensus 332 v~~~~~~~ 339 (367)
+.+++-.+
T Consensus 276 fvLekL~~ 283 (554)
T KOG2028|consen 276 FVLEKLPV 283 (554)
T ss_pred eEeccCCH
Confidence 99987654
No 180
>PRK08233 hypothetical protein; Provisional
Probab=93.05 E-value=0.046 Score=47.72 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||+.+.|++++.
T Consensus 6 I~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 44569999999999999988763
No 181
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.04 E-value=0.07 Score=48.32 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.9
Q ss_pred heeccccCCCchhhHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
+++.|+|||||||..+-|+++|.+-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 5678999999999999999998653
No 182
>PRK14531 adenylate kinase; Provisional
Probab=93.01 E-value=0.051 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.1
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+++.|+|||||||..+.|++.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999988775
No 183
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.01 E-value=0.051 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=18.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-++||+||||||.++++....
T Consensus 36 TAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhhc
Confidence 4467999999999999876543
No 184
>PRK14532 adenylate kinase; Provisional
Probab=93.01 E-value=0.045 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|+|||||||..+.|++.+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6788999999999999988765
No 185
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.97 E-value=0.092 Score=50.95 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=28.9
Q ss_pred hhHHHHHhhhhhheeccccCCCchhhHHHHHHHH
Q psy4734 173 PHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 173 ~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+..++..+..++++|++||||||+.+.|...+
T Consensus 139 ~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 139 EAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4577778888889999999999999999888665
No 186
>KOG0991|consensus
Probab=92.96 E-value=0.061 Score=49.57 Aligned_cols=25 Identities=36% Similarity=0.399 Sum_probs=21.7
Q ss_pred hhhheeccccCCCchhhHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.-+++.||||+||||++.+|+..|
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHH
Confidence 3447788999999999999999877
No 187
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=92.94 E-value=0.042 Score=56.17 Aligned_cols=117 Identities=15% Similarity=0.212 Sum_probs=75.0
Q ss_pred HHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceecccccccccchH
Q psy4734 178 IFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHEWRDGIL 253 (367)
Q Consensus 178 ~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~~~~~W~dGil 253 (367)
.-....+|++.|++|+||....+. +...+.+.. + ....+|+.|++ =.+|||+- .|.|
T Consensus 264 ~A~tdstVLi~GESGTGKElfA~~----IH~~S~R~~----~---PFIaiNCaAiPe~LlESELFGye--------~GAF 324 (560)
T COG3829 264 IAKTDSTVLILGESGTGKELFARA----IHNLSPRAN----G---PFIAINCAAIPETLLESELFGYE--------KGAF 324 (560)
T ss_pred hcCCCCcEEEecCCCccHHHHHHH----HHhcCcccC----C---CeEEEecccCCHHHHHHHHhCcC--------Cccc
Confidence 334667799999999999877554 444443321 1 23458999987 57889973 3444
Q ss_pred HHHHHHHhc--CCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEec
Q psy4734 254 AKTFREMAV--STTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFEC 315 (367)
Q Consensus 254 ~~~~r~~~~--~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~ 315 (367)
+=+.+.+.. -+-.+.=-+.+| |++...-=--|-.||.+.....+.+-+-++. .+|+|=-|
T Consensus 325 TGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~v--DVRIIAAT 388 (560)
T COG3829 325 TGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPV--DVRIIAAT 388 (560)
T ss_pred cccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceee--EEEEEecc
Confidence 444442211 111223457888 7777776667777889988888877775554 68887554
No 188
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.91 E-value=0.066 Score=47.15 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.4
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.++|.||+|+|||.+.+.|++.+.
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999998875
No 189
>smart00350 MCM minichromosome maintenance proteins.
Probab=92.91 E-value=0.32 Score=50.32 Aligned_cols=137 Identities=10% Similarity=0.177 Sum_probs=74.2
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEE-eCCCC--Cccccccceecccccccc--cchHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKI-INPKS--ITMGQLYGEFDSASHEWR--DGILAKTFR 258 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~-inpka--~t~~~l~G~~d~~~~~W~--dGil~~~~r 258 (367)
-++++|+||+|||++.+.+++.... ..++. ..+.+ ++...+ .++.+++|. -|.+.
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r-------------~~~~~~~~~~~~~l~~~~~---~~~~~g~~~~~~G~l~---- 297 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPR-------------AVYTTGKGSSAVGLTAAVT---RDPETREFTLEGGALV---- 297 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCc-------------ceEcCCCCCCcCCccccce---EccCcceEEecCccEE----
Confidence 4899999999999999987765321 01111 01111 221111 233344443 22211
Q ss_pred HHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeec-ccceeecCCCCeEEEecCCCC-------------ccC
Q psy4734 259 EMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLI-NGEIIKMSNTMNLIFECENLE-------------FAS 322 (367)
Q Consensus 259 ~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~-~ge~i~l~~~~~~ifE~~~l~-------------~as 322 (367)
..+.--+++| ..+++.--..|..+|++. .+++. .|....++..+++|--+.-.. ..+
T Consensus 298 ------~A~~Gil~iDEi~~l~~~~q~~L~e~me~~-~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~ 370 (509)
T smart00350 298 ------LADNGVCCIDEFDKMDDSDRTAIHEAMEQQ-TISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLP 370 (509)
T ss_pred ------ecCCCEEEEechhhCCHHHHHHHHHHHhcC-EEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCC
Confidence 1122455666 123444445556666543 44443 466677887887775544331 689
Q ss_pred cchhhceeeEEec--ccCCchHHHHHH
Q psy4734 323 PATVSRVGMIYFE--LKCISWTTFFLS 347 (367)
Q Consensus 323 PatvsRcg~v~~~--~~~~~~~~~~~s 347 (367)
|+.+||-.|+++- ..+-.+..-+..
T Consensus 371 ~~lLsRFdLi~~~~d~~~~~~d~~i~~ 397 (509)
T smart00350 371 APILSRFDLLFVVLDEVDEERDRELAK 397 (509)
T ss_pred hHHhCceeeEEEecCCCChHHHHHHHH
Confidence 9999999997763 334445444433
No 190
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.90 E-value=0.061 Score=48.07 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|+..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999998876
No 191
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.88 E-value=0.053 Score=48.45 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=21.1
Q ss_pred heeccccCCCchhhHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
|.+.|++||||||+.+.|+..++..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 3567999999999999999888643
No 192
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.86 E-value=0.056 Score=45.31 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999988766
No 193
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.84 E-value=0.051 Score=46.42 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=18.4
Q ss_pred hhheeccccCCCchhhHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~ 204 (367)
+-+|++|++||||||+.+.|..
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 4589999999999999877653
No 194
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.84 E-value=0.063 Score=47.08 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|+|||||||+.+.|++.+
T Consensus 5 i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 5678999999999999988765
No 195
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.81 E-value=0.073 Score=43.71 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=20.0
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
...+++.|++|+|||++++.+...+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~ 31 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAE 31 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHh
Confidence 3456788999999999999988776543
No 196
>KOG0745|consensus
Probab=92.76 E-value=0.1 Score=52.00 Aligned_cols=85 Identities=22% Similarity=0.361 Sum_probs=53.8
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHh
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 261 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~ 261 (367)
...++++||+|||||.+.++||+.++ |.+..-++-++|..-+.|. =.+.++.+++..+.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ld--------------VPfaIcDcTtLTQAGYVGe-------DVEsvi~KLl~~A~ 284 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLD--------------VPFAICDCTTLTQAGYVGE-------DVESVIQKLLQEAE 284 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhC--------------CCeEEecccchhhcccccc-------cHHHHHHHHHHHcc
Confidence 35688899999999999999988773 4444445556665544442 24567888887764
Q ss_pred cC-CCCCceEEEEcCCCChH--hhhhhhhc
Q psy4734 262 VS-TTPDRKWIMFDGPIDAV--WIENMNTV 288 (367)
Q Consensus 262 ~~-~~~~~~wivfDG~~d~~--wie~lnsv 288 (367)
-. +...+-++++| .+|-. -.|.+|+.
T Consensus 285 ~nVekAQqGIVflD-EvDKi~~~~~~i~~~ 313 (564)
T KOG0745|consen 285 YNVEKAQQGIVFLD-EVDKITKKAESIHTS 313 (564)
T ss_pred CCHHHHhcCeEEEe-hhhhhcccCcccccc
Confidence 33 22233456666 66543 34555554
No 197
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.73 E-value=0.063 Score=51.21 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=24.4
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIA 210 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~ 210 (367)
..+++|.||||+|||++.+.++..+..+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 34688999999999999999998887653
No 198
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.73 E-value=0.056 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=19.1
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-+.++|||||||||+++++..-+
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 335678999999999999976544
No 199
>PRK02496 adk adenylate kinase; Provisional
Probab=92.65 E-value=0.071 Score=47.04 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|+|||||||+.+.|++.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6778999999999999998776
No 200
>COG1084 Predicted GTPase [General function prediction only]
Probab=92.62 E-value=0.46 Score=45.85 Aligned_cols=71 Identities=25% Similarity=0.383 Sum_probs=47.4
Q ss_pred hhcCCCccchhhhHHHHHHHhHhhhhhhhhhhcccCCCceeecchHHHHHHHHhcCCcccchhhHHHH--Hh-hhhhhee
Q psy4734 111 LSETKDPLRVQPHLKKIFEASMALISGLVATLNLLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKI--FE-VRHGLMV 187 (367)
Q Consensus 111 l~~~~~~~~i~~~l~k~f~~i~~l~~~l~~~~~~~~fprf~f~s~~~Ll~ils~~~~~~~lq~~l~k~--~~-~~~~v~~ 187 (367)
|..+++|.....-.+.-|.-+.++...+.+++ .| +. .+..||.++ ++ ...++++
T Consensus 117 lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L---~f--------------L~------~~r~~l~~LP~Idp~~pTivV 173 (346)
T COG1084 117 LKAAKDPKEANQLRRQAFGRVASIIKKIDDDL---EF--------------LR------KARDHLKKLPAIDPDLPTIVV 173 (346)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHhhHHH---HH--------------HH------HHHHHHhcCCCCCCCCCeEEE
Confidence 33477888888888888888888876655544 11 11 122345544 23 4466888
Q ss_pred ccccCCCchhhHHHHHH
Q psy4734 188 VGESFGGKTTAYQTLAD 204 (367)
Q Consensus 188 ~g~~gsGKTt~~~~L~~ 204 (367)
.|.|+.||||+.+.+..
T Consensus 174 aG~PNVGKSSlv~~lT~ 190 (346)
T COG1084 174 AGYPNVGKSSLVRKLTT 190 (346)
T ss_pred ecCCCCcHHHHHHHHhc
Confidence 89999999999877543
No 201
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.59 E-value=0.058 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|+|||||||+.+.|++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5678999999999999988765
No 202
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.59 E-value=0.07 Score=48.14 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|+..+
T Consensus 9 I~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999998876
No 203
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=92.56 E-value=0.79 Score=44.10 Aligned_cols=138 Identities=12% Similarity=0.157 Sum_probs=79.3
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 260 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~ 260 (367)
..|..+|.|+.|.||++..+.++.++.-.... . +++.. .+.-+-.+|+... .+-..-+|+.
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~-~------------~~~~~--~p~n~~~~d~~g~----~i~vd~Ir~l 77 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQIT-N------------LNEQE--LPANIILFDIFDK----DLSKSEFLSA 77 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCC-C------------CCCCC--CCcceEEeccCCC----cCCHHHHHHH
Confidence 45778899999999999999998877321100 0 11110 0111111221110 0111223333
Q ss_pred hc----C--CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEe
Q psy4734 261 AV----S--TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYF 334 (367)
Q Consensus 261 ~~----~--~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~ 334 (367)
.. . +..++|-+|+|+. |..-.+..|++|.- | | ..|++.-+||-+++....-|+..|||-++.+
T Consensus 78 ~~~~~~~~~~~~~~KvvII~~~-e~m~~~a~NaLLK~-----L---E--EPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 78 INKLYFSSFVQSQKKILIIKNI-EKTSNSLLNALLKT-----I---E--EPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred HHHhccCCcccCCceEEEEecc-cccCHHHHHHHHHH-----h---h--CCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 22 2 2358899999963 44444455554421 1 1 2567788888888888888888999999999
Q ss_pred cccCCchHHHHHHHHHH
Q psy4734 335 ELKCISWTTFFLSYQNE 351 (367)
Q Consensus 335 ~~~~~~~~~~~~swl~~ 351 (367)
.+-. ..-+..||..
T Consensus 147 ~~l~---~~~l~~~l~~ 160 (299)
T PRK07132 147 KEPD---QQKILAKLLS 160 (299)
T ss_pred CCCC---HHHHHHHHHH
Confidence 8754 2455666654
No 204
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.46 E-value=0.1 Score=42.07 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.1
Q ss_pred heeccccCCCchhhHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
|.+.|++|+|||++.+.|+..+..-
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999998877644
No 205
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.45 E-value=0.084 Score=46.23 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.6
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-+.+.|++||||||+.+.|+..+.
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 366789999999999999888775
No 206
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.41 E-value=0.087 Score=47.46 Aligned_cols=25 Identities=36% Similarity=0.317 Sum_probs=20.6
Q ss_pred hheeccccCCCchhhHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
-++++||+|+||||++--|+..+..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~ 27 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKL 27 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhh
Confidence 3678999999999998888876643
No 207
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=92.39 E-value=0.14 Score=51.14 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=84.7
Q ss_pred hHHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceecc---ccc
Q psy4734 174 HLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDS---ASH 246 (367)
Q Consensus 174 ~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~---~~~ 246 (367)
+++..-.....|++.|++|+||+.+.+.+. ++..-.. .. ....+|+.+++ -.+|||.--- ...
T Consensus 93 qik~~ap~~~~vLi~GetGtGKel~A~~iH-~~s~r~~-------~~--PFI~~NCa~~~en~~~~eLFG~~kGaftGa~ 162 (403)
T COG1221 93 QIKAYAPSGLPVLIIGETGTGKELFARLIH-ALSARRA-------EA--PFIAFNCAAYSENLQEAELFGHEKGAFTGAQ 162 (403)
T ss_pred HHHhhCCCCCcEEEecCCCccHHHHHHHHH-Hhhhccc-------CC--CEEEEEHHHhCcCHHHHHHhccccceeeccc
Confidence 444444456679999999999999988877 2221100 11 13457877775 3347884200 011
Q ss_pred ccccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCC-CCccCc
Q psy4734 247 EWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-LEFASP 323 (367)
Q Consensus 247 ~W~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~-l~~asP 323 (367)
+=+-|+|. .-+.--+.+| |++.+.--|.|-.+||+.-.-.+.+ .-+.+.++|+++-|+. +..+--
T Consensus 163 ~~k~Glfe----------~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~--~~~~~~dVRli~AT~~~l~~~~~ 230 (403)
T COG1221 163 GGKAGLFE----------QANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGG--SQPRPVDVRLICATTEDLEEAVL 230 (403)
T ss_pred CCcCchhe----------ecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCC--CCCcCCCceeeeccccCHHHHHH
Confidence 11222221 1122567777 7778888888999999887777754 5678889999999865 333322
Q ss_pred c--hhhc-eeeEEec
Q psy4734 324 A--TVSR-VGMIYFE 335 (367)
Q Consensus 324 a--tvsR-cg~v~~~ 335 (367)
+ +.-| +..+.+.
T Consensus 231 ~g~dl~~rl~~~~I~ 245 (403)
T COG1221 231 AGADLTRRLNILTIT 245 (403)
T ss_pred hhcchhhhhcCceec
Confidence 3 5555 6665554
No 208
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.35 E-value=0.073 Score=44.97 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||+.+.|++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 4578999999999999887654
No 209
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.25 E-value=0.25 Score=49.10 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=52.4
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc-cccc------cce-ecccccccccchH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQL------YGE-FDSASHEWRDGIL 253 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t-~~~l------~G~-~d~~~~~W~dGil 253 (367)
..-++++||+|+||||++..|+..+... +.+|.+...+|-... ..+| .|. +-.. =...-+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~---------g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~dL 273 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQ---------NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAEL 273 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHHH
Confidence 3447789999999999988888654221 234555555554331 1122 221 0000 011123
Q ss_pred HHHHHHHhcCCCCCceEEEEcCC----CChHhhhhhhhccC
Q psy4734 254 AKTFREMAVSTTPDRKWIMFDGP----IDAVWIENMNTVLD 290 (367)
Q Consensus 254 ~~~~r~~~~~~~~~~~wivfDG~----~d~~wie~lnsvld 290 (367)
..+++.+.. ......|++|.+ .|..+++-|..+++
T Consensus 274 ~~al~~l~~--~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~ 312 (407)
T PRK12726 274 EEAVQYMTY--VNCVDHILIDTVGRNYLAEESVSEISAYTD 312 (407)
T ss_pred HHHHHHHHh--cCCCCEEEEECCCCCccCHHHHHHHHHHhh
Confidence 334443321 134589999944 57889988887665
No 210
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.22 E-value=0.067 Score=43.40 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=17.9
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..+.++||+||||||+++++.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457789999999999988864
No 211
>PRK08181 transposase; Validated
Probab=92.19 E-value=0.11 Score=49.06 Aligned_cols=87 Identities=13% Similarity=0.196 Sum_probs=51.3
Q ss_pred hhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHH
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~ 259 (367)
+...++++.||+|+|||.+...++..+... +..|.+. +..+|+..+.. .+.++-+...++.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~---------g~~v~f~-------~~~~L~~~l~~---a~~~~~~~~~l~~ 164 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIEN---------GWRVLFT-------RTTDLVQKLQV---ARRELQLESAIAK 164 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHc---------CCceeee-------eHHHHHHHHHH---HHhCCcHHHHHHH
Confidence 445679999999999999988877655321 1233322 23445544421 2345555566665
Q ss_pred HhcCCCCCceEEEEc--CC--CChHhhhhhhhccC
Q psy4734 260 MAVSTTPDRKWIMFD--GP--IDAVWIENMNTVLD 290 (367)
Q Consensus 260 ~~~~~~~~~~wivfD--G~--~d~~wie~lnsvld 290 (367)
.. ....+|+| |. .+..|.+.|-.+++
T Consensus 165 l~-----~~dLLIIDDlg~~~~~~~~~~~Lf~lin 194 (269)
T PRK08181 165 LD-----KFDLLILDDLAYVTKDQAETSVLFELIS 194 (269)
T ss_pred Hh-----cCCEEEEeccccccCCHHHHHHHHHHHH
Confidence 52 33688888 22 35556556655554
No 212
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.14 E-value=0.072 Score=50.06 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=24.5
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHHH
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+..+...+..+++.|++||||||+++.|...+.
T Consensus 120 l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 120 LRSAVRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp HHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred HhhccccceEEEEECCCccccchHHHHHhhhcc
Confidence 344444566688889999999999988766553
No 213
>PRK06547 hypothetical protein; Provisional
Probab=92.12 E-value=0.087 Score=46.43 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 18 i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 18 VLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4556999999999999988764
No 214
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.12 E-value=0.22 Score=52.22 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.0
Q ss_pred hheeccccCCCchhhHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
.+.++|.+||||||+.+.|++.+..
T Consensus 394 ~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 394 TVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred EEEEECCCCChHHHHHHHHHHHhhh
Confidence 4677899999999999999998864
No 215
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.11 E-value=0.1 Score=45.95 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=20.9
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|+.||||||..+.|++.+..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 457799999999999999998853
No 216
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.10 E-value=0.093 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=19.9
Q ss_pred eeccccCCCchhhHHHHHHHHHH
Q psy4734 186 MVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 186 ~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
.+.|++||||||+.+.|+..+..
T Consensus 3 gI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 3 GIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EeeCCCCCCHHHHHHHHHHHHhh
Confidence 46799999999999999988753
No 217
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.10 E-value=0.078 Score=44.75 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=25.9
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHHHH
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+++....-+.+.|+.|+||||+.+.++++++.
T Consensus 15 l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 15 FAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3444444445778899999999999999998853
No 218
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.08 E-value=0.09 Score=47.46 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++|++||||||+.+.|+..+.
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 45679999999999999887654
No 219
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=92.07 E-value=0.22 Score=44.68 Aligned_cols=47 Identities=30% Similarity=0.338 Sum_probs=30.8
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccc
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQL 237 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l 237 (367)
.+++.|.+|+|||++++.+..++..... ...+.++.++|+......+
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~~~-------p~~~~l~iiD~k~~~l~~~ 86 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALTYS-------PDDVQLYIIDPKGSDLAPL 86 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT---------TTTEEEEEE-TTSSCCGGG
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHhc-------CCccEEEEEcCCccccchh
Confidence 5788899999999999987776644321 2357788899996554444
No 220
>PRK13764 ATPase; Provisional
Probab=91.87 E-value=0.49 Score=49.75 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=24.7
Q ss_pred HHhhhhhheeccccCCCchhhHHHHHHHHH
Q psy4734 178 IFEVRHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 178 ~~~~~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+...+.++++.|++||||||+++.|...+.
T Consensus 253 l~~~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 253 LEERAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345567788899999999999998887764
No 221
>PRK00625 shikimate kinase; Provisional
Probab=91.86 E-value=0.1 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.3
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
++++|.+||||||+.+.|++.++
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67889999999999999988763
No 222
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.082 Score=50.81 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=22.9
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..+.++++||+|||||-+.++||+.|+
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~Ln 122 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILN 122 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHhC
Confidence 345688999999999999999998773
No 223
>PF05729 NACHT: NACHT domain
Probab=91.83 E-value=0.12 Score=43.86 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=20.5
Q ss_pred heeccccCCCchhhHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
+.+.|++|+|||++.+.++..+...
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhc
Confidence 5678999999999998887766543
No 224
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.80 E-value=0.16 Score=49.61 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=72.4
Q ss_pred HHhcCCcccchhhHHHH--HhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccc
Q psy4734 162 LSETKDPLRVQPHLKKI--FEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYG 239 (367)
Q Consensus 162 ls~~~~~~~lq~~l~k~--~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G 239 (367)
+.++.+-.-.+|.+++- ++-..||++.||||+|||.+.+..|...+ .....+.-. -=++.+.|
T Consensus 163 irE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--------------AtFIrvvgS-ElVqKYiG 227 (406)
T COG1222 163 IREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--------------ATFIRVVGS-ELVQKYIG 227 (406)
T ss_pred HHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--------------ceEEEeccH-HHHHHHhc
Confidence 34444444456665554 35678999999999999999887664321 111111110 01122233
Q ss_pred eecccccccccchHHHHHHHHhcC-CCCCceEEEEcCCCChHhhhhhhhccCCCC-----ceee-cccceeecCCCCeEE
Q psy4734 240 EFDSASHEWRDGILAKTFREMAVS-TTPDRKWIMFDGPIDAVWIENMNTVLDDNK-----KLCL-INGEIIKMSNTMNLI 312 (367)
Q Consensus 240 ~~d~~~~~W~dGil~~~~r~~~~~-~~~~~~wivfDG~~d~~wie~lnsvlddn~-----~l~L-~~ge~i~l~~~~~~i 312 (367)
+| ++++|+...- ..+.+..|++| .+|+-=.-..++--...+ +|-| +.=|=.--..++++|
T Consensus 228 ----------EG--aRlVRelF~lArekaPsIIFiD-EIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 228 ----------EG--ARLVRELFELAREKAPSIIFID-EIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred ----------cc--hHHHHHHHHHHhhcCCeEEEEe-chhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 22 5677776543 34667888888 444432222211000000 0000 001112235578889
Q ss_pred EecCCCCccCcchh
Q psy4734 313 FECENLEFASPATV 326 (367)
Q Consensus 313 fE~~~l~~asPatv 326 (367)
+-|.-..-.-||.+
T Consensus 295 ~ATNR~D~LDPALL 308 (406)
T COG1222 295 MATNRPDILDPALL 308 (406)
T ss_pred EecCCccccChhhc
Confidence 88888888888876
No 225
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.78 E-value=0.082 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||+.+.|+...
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEECCCCCCHHHHHHHHHccC
Confidence 5678999999999998887643
No 226
>PRK14528 adenylate kinase; Provisional
Probab=91.77 E-value=0.09 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|||||||||..+.|++.+
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999988765
No 227
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=91.76 E-value=0.48 Score=41.12 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=43.4
Q ss_pred ccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhcC-CCC
Q psy4734 188 VGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS-TTP 266 (367)
Q Consensus 188 ~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~-~~~ 266 (367)
.+.+|+||||+.-.|+.++... +.+|.+...+|..-+...+++ .-.....+++.... ...
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~---------g~~vllvD~D~q~~~~~~~~~----------~~~~~~~l~~~~~~~~~~ 66 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKL---------GYKVGLLDADIYGPSIPKMWR----------GPMKMGAIKQFLTDVDWG 66 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHc---------CCcEEEEeCCCCCCCchHHHh----------CcchHHHHHHHHHHhhcC
Confidence 3678999999999999888754 346777777776544332211 11122333333221 124
Q ss_pred CceEEEEcCCCC
Q psy4734 267 DRKWIMFDGPID 278 (367)
Q Consensus 267 ~~~wivfDG~~d 278 (367)
.-.+||+|.|..
T Consensus 67 ~yD~VIiD~pp~ 78 (169)
T cd02037 67 ELDYLVIDMPPG 78 (169)
T ss_pred CCCEEEEeCCCC
Confidence 568999998864
No 228
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=91.74 E-value=0.093 Score=44.74 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=17.8
Q ss_pred eccccCCCchhhHHHHHHHH
Q psy4734 187 VVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 187 ~~g~~gsGKTt~~~~L~~al 206 (367)
+.|||||||||+.+.|++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 47999999999999988865
No 229
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.74 E-value=0.11 Score=44.47 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.2
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
++++|++||||||+.+.|+..+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999988774
No 230
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.68 E-value=0.12 Score=44.89 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=18.2
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
..+++.|++|+|||++++.+...+..
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55788899999999999877766644
No 231
>PRK06696 uridine kinase; Validated
Probab=91.61 E-value=0.12 Score=47.19 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.7
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
|.+.|++||||||+.+.|++.+..
T Consensus 25 I~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 25 VAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 556699999999999999998864
No 232
>PF13245 AAA_19: Part of AAA domain
Probab=91.54 E-value=0.19 Score=38.03 Aligned_cols=24 Identities=38% Similarity=0.372 Sum_probs=15.8
Q ss_pred hhhee-ccccCCCchh-hHHHHHHHH
Q psy4734 183 HGLMV-VGESFGGKTT-AYQTLADSL 206 (367)
Q Consensus 183 ~~v~~-~g~~gsGKTt-~~~~L~~al 206 (367)
.++++ .||||+|||+ +.+.++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44454 7999999995 544444443
No 233
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.52 E-value=0.1 Score=46.73 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||+.+.|+..+
T Consensus 8 i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 8 IVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 5678999999999999988764
No 234
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=91.52 E-value=0.5 Score=51.58 Aligned_cols=88 Identities=19% Similarity=0.150 Sum_probs=47.4
Q ss_pred heeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc-c--------ccccceecccccccccchHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-M--------GQLYGEFDSASHEWRDGILAK 255 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t-~--------~~l~G~~d~~~~~W~dGil~~ 255 (367)
+++.|+||+|||++.+.+.+.+....... ....+.+..||+-.+. . .+|+|.. |.++--...++..
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk----~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~-P~~GlsS~evLer 858 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQK----LLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKK-PPNALNSFKILDR 858 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhc----cCCCceEEEEeCCccCCHHHHHHHHHHHHcCCC-CCccccHHHHHHH
Confidence 35789999999999998877665433221 1123556667775432 2 2333432 2222112334555
Q ss_pred HHHHHhcCCCCCceEEEEcCCCCh
Q psy4734 256 TFREMAVSTTPDRKWIMFDGPIDA 279 (367)
Q Consensus 256 ~~r~~~~~~~~~~~wivfDG~~d~ 279 (367)
+++.... .......||+| ++|.
T Consensus 859 LF~~L~k-~~r~v~IIILD-EID~ 880 (1164)
T PTZ00112 859 LFNQNKK-DNRNVSILIID-EIDY 880 (1164)
T ss_pred HHhhhhc-ccccceEEEee-hHhh
Confidence 5554321 12234588999 5553
No 235
>PRK13808 adenylate kinase; Provisional
Probab=91.52 E-value=0.4 Score=46.75 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|||||||||..+.|+..+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999887765
No 236
>PRK14527 adenylate kinase; Provisional
Probab=91.47 E-value=0.098 Score=46.55 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|+|||||||..+.|++.+
T Consensus 9 i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 9 VIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6677999999999999887655
No 237
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.47 E-value=0.098 Score=47.34 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=18.5
Q ss_pred hhheeccccCCCchhhHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~a 205 (367)
.-+.++||+|+||||+++.|.+.
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhc
Confidence 34667899999999999887643
No 238
>PTZ00301 uridine kinase; Provisional
Probab=91.46 E-value=0.13 Score=46.89 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=19.6
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
|.+.|+|||||||+.+.|.+.+..
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHh
Confidence 446799999999999888877653
No 239
>PRK04040 adenylate kinase; Provisional
Probab=91.46 E-value=0.11 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.8
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++|.|||||||+.+.|++.+.
T Consensus 5 i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 5 VVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhc
Confidence 56789999999999999887763
No 240
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.44 E-value=0.21 Score=48.76 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=35.3
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC-ccccccce
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGE 240 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~-t~~~l~G~ 240 (367)
-+-+.|++|+||||+...|...+... +.+|.+..++|.+. +-+.+.|+
T Consensus 58 ~igi~G~~GaGKSTl~~~l~~~l~~~---------g~~v~vi~~Dp~s~~~~gallgd 106 (332)
T PRK09435 58 RIGITGVPGVGKSTFIEALGMHLIEQ---------GHKVAVLAVDPSSTRTGGSILGD 106 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEEeCCCccccchhhhch
Confidence 36678999999999999988887533 23577777888774 44555553
No 241
>PRK00279 adk adenylate kinase; Reviewed
Probab=91.38 E-value=0.1 Score=47.38 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.8
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+++.|+|||||||..+.|++.++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57789999999999999887663
No 242
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.36 E-value=0.14 Score=48.25 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=24.5
Q ss_pred HHHHHhhhhh-heeccccCCCchhhHHHHHHHHH
Q psy4734 175 LKKIFEVRHG-LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 175 l~k~~~~~~~-v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++....+| +++.|++||||||+++.+...+.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 4555555666 56779999999999987765553
No 243
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.34 E-value=0.14 Score=52.06 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=23.0
Q ss_pred HHHHHhhhhhheec-cccCCCchhhHHHHHHHH
Q psy4734 175 LKKIFEVRHGLMVV-GESFGGKTTAYQTLADSL 206 (367)
Q Consensus 175 l~k~~~~~~~v~~~-g~~gsGKTt~~~~L~~al 206 (367)
+...+...+|++++ ||+||||||++..+-..+
T Consensus 250 ~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 250 LLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred HHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 44566778887765 999999998766543333
No 244
>PRK13975 thymidylate kinase; Provisional
Probab=91.31 E-value=0.12 Score=45.81 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.3
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||..+.|++.+.
T Consensus 5 I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 5 IVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56779999999999999998874
No 245
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.27 E-value=0.11 Score=46.88 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=20.5
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-..|.+.||+||||||++++++.-.
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 33447778999999999999877554
No 246
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.26 E-value=0.12 Score=51.54 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.2
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...|+++.||||+|||++.+.++..+
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHh
Confidence 45679999999999999999887654
No 247
>KOG1970|consensus
Probab=91.24 E-value=0.11 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+++.||+||||||++++|++-++
T Consensus 113 LLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred EEEeCCCCCCchhHHHHHHHhhC
Confidence 44569999999999999998764
No 248
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.21 E-value=0.11 Score=53.41 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.5
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
...|++|.||||+|||++.+.++..+.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 457899999999999999999887764
No 249
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=91.19 E-value=0.29 Score=51.16 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.0
Q ss_pred hhheeccccCCCchhhHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~ 204 (367)
..+++.|++|||||++.++++.
T Consensus 420 ~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 420 ERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3488899999999999998774
No 250
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=91.15 E-value=0.1 Score=51.38 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.8
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...|+++.||||+|||++.+.++..+
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhC
Confidence 35679999999999999999887654
No 251
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.09 E-value=0.44 Score=50.08 Aligned_cols=26 Identities=27% Similarity=0.292 Sum_probs=21.4
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
..++|.|++|+|||.+++.++..+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~ 340 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR 340 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34888999999999999988876643
No 252
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.04 E-value=0.15 Score=44.55 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=24.0
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHH
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.+.+.. +.++|+|++|+||||+++.|...
T Consensus 29 l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 29 LKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 4555556 77889999999999999987654
No 253
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.04 E-value=0.15 Score=45.17 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=20.6
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|++||||||+.+.|++.+..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 457799999999999999988763
No 254
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=91.03 E-value=0.29 Score=47.86 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.4
Q ss_pred heeccccCCCchhhHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
+.|.||.|+||||+.+.|.+.+...
T Consensus 91 l~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 91 LLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred EEEECCCCCCHHHHHHHHHHHhheE
Confidence 5678999999999999999887554
No 255
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.00 E-value=0.11 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.8
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.+.++|+.|+||||+=+.||++|+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcC
Confidence 478999999999999999999884
No 256
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=90.91 E-value=0.049 Score=45.88 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=27.3
Q ss_pred cchhhHHHHHhhhhhheeccccCCCchhhHHHHHH
Q psy4734 170 RVQPHLKKIFEVRHGLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 170 ~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~ 204 (367)
++..++.++-.....|++.|++|+||+++.+.+..
T Consensus 9 ~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 9 RLRRQLERLAKSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp HHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred HHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 45556777778888999999999999999776543
No 257
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=90.90 E-value=0.13 Score=45.13 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.3
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.+.++|++|+||||+.+.|+..+
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc
Confidence 47889999999999999988765
No 258
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.90 E-value=0.18 Score=46.32 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.1
Q ss_pred heeccccCCCchhhHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
+.+.|++||||||+.+.|+..+...
T Consensus 36 igi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 36 VGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhc
Confidence 5567999999999999999887644
No 259
>PLN02200 adenylate kinase family protein
Probab=90.86 E-value=0.12 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|+|||||||..+.|++.+
T Consensus 46 i~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 46 TFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5677999999999999888765
No 260
>KOG1533|consensus
Probab=90.83 E-value=0.26 Score=45.50 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=28.0
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCC
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS 231 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka 231 (367)
|..++|||||||||-..-+.+.++.+++ +|.+..++|.-
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fls~~gr---------~~~vVNLDPaN 42 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFLSAIGR---------PVAVVNLDPAN 42 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHHHHhCC---------ceEEEecCCcc
Confidence 4567899999999987777777776643 35555566654
No 261
>CHL00195 ycf46 Ycf46; Provisional
Probab=90.74 E-value=0.12 Score=53.11 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.3
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...|+++.||||+|||.+.+.++..+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999999999999999887654
No 262
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=90.74 E-value=0.13 Score=44.64 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=21.4
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++++|.+||||||+.+.|++.++
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3477889999999999999998763
No 263
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=90.73 E-value=0.15 Score=41.05 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=16.9
Q ss_pred heeccccCCCchhhHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~ 204 (367)
++++|++|+||||+++.|..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~ 21 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCG 21 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 46789999999999887664
No 264
>PRK10536 hypothetical protein; Provisional
Probab=90.69 E-value=0.35 Score=45.43 Aligned_cols=157 Identities=13% Similarity=0.078 Sum_probs=82.9
Q ss_pred HhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccc-----cccccchH
Q psy4734 179 FEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSAS-----HEWRDGIL 253 (367)
Q Consensus 179 ~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~-----~~W~dGil 253 (367)
+....-+++.||+|+|||++...++.. .+... .+...++.-..++.++.+|++ |.+ ..|---+.
T Consensus 71 l~~~~lV~i~G~aGTGKT~La~a~a~~--~l~~~--------~~~kIiI~RP~v~~ge~LGfL-PG~~~eK~~p~~~pi~ 139 (262)
T PRK10536 71 IESKQLIFATGEAGCGKTWISAAKAAE--ALIHK--------DVDRIIVTRPVLQADEDLGFL-PGDIAEKFAPYFRPVY 139 (262)
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHHH--HHhcC--------CeeEEEEeCCCCCchhhhCcC-CCCHHHHHHHHHHHHH
Confidence 344455677799999999997766542 22111 123222333345677877765 222 12433222
Q ss_pred HHHH--------HHHhc---------------CCCCCceEEEEc--CCCChHhhhhhhhccCCCCce-eecccceeecCC
Q psy4734 254 AKTF--------REMAV---------------STTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKL-CLINGEIIKMSN 307 (367)
Q Consensus 254 ~~~~--------r~~~~---------------~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l-~L~~ge~i~l~~ 307 (367)
..+- +.... ...-+..+||+| -.+++.-+..+.+-+.++..+ .+.+-..|-+|+
T Consensus 140 D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~QiD~p~ 219 (262)
T PRK10536 140 DVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPR 219 (262)
T ss_pred HHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChhhccCCC
Confidence 2211 11110 011245799999 335665555555555554444 444445555543
Q ss_pred CCeEEEecCCCCccCcch--hhceeeEEecccCCchHHHHHHHHHH
Q psy4734 308 TMNLIFECENLEFASPAT--VSRVGMIYFELKCISWTTFFLSYQNE 351 (367)
Q Consensus 308 ~~~~ifE~~~l~~asPat--vsRcg~v~~~~~~~~~~~~~~swl~~ 351 (367)
. +.+=|.+|.-.. ...+|.|+++.+++-=.+++..+++.
T Consensus 220 ~-----~~sGL~~~~~~~k~~~~~~~i~l~~~d~vRs~l~~~~~~a 260 (262)
T PRK10536 220 G-----VKSGLSDALERFEEDEMVGIVRFGKEDCVRSALCQRTLHA 260 (262)
T ss_pred C-----CCCCHHHHHHHhCCCCceEEEEEecCceEecHHHHHHHHH
Confidence 2 122233322211 35799999998888777888887754
No 265
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=90.66 E-value=0.12 Score=44.58 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|++||||||+.+.|++.+
T Consensus 3 I~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5678999999999999988765
No 266
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=90.66 E-value=0.13 Score=51.53 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.1
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...|+++.||||+|||++.+.++..+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999887643
No 267
>KOG0727|consensus
Probab=90.61 E-value=0.19 Score=46.97 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=30.0
Q ss_pred hcCCcccchhhHHHHH--hhhhhheeccccCCCchhhHHHHHHH
Q psy4734 164 ETKDPLRVQPHLKKIF--EVRHGLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 164 ~~~~~~~lq~~l~k~~--~~~~~v~~~g~~gsGKTt~~~~L~~a 205 (367)
++.+-.-.+..+++.+ +-..||++.||||+|||.+.+..+..
T Consensus 169 eavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 169 EAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred HHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 3333333455577763 56789999999999999998876643
No 268
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.61 E-value=0.13 Score=49.66 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=26.7
Q ss_pred hhHHHHHhhhhhheeccccCCCchhhHHHHHHHH
Q psy4734 173 PHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 173 ~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+.-++..+..++++|++||||||+++.|...+
T Consensus 135 ~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 135 EFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred HHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 3455566677789999999999999998876544
No 269
>PRK00698 tmk thymidylate kinase; Validated
Probab=90.59 E-value=0.18 Score=44.91 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.6
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|+.||||||..+.|++.+..
T Consensus 6 I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 6 ITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 556799999999999999988753
No 270
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=90.56 E-value=0.11 Score=43.11 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=18.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||++++|+...
T Consensus 14 ~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 14 VAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEccCCCccccceeeecccc
Confidence 5678999999999998876543
No 271
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.56 E-value=0.13 Score=47.62 Aligned_cols=22 Identities=45% Similarity=0.433 Sum_probs=18.5
Q ss_pred hheeccccCCCchhhHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~a 205 (367)
.+-++|++||||||+.++|+.-
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcc
Confidence 3668999999999999987743
No 272
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=90.54 E-value=0.21 Score=44.91 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=15.3
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
.++.||||+|||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 5566999999997766655544
No 273
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=90.54 E-value=0.14 Score=49.41 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=19.6
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++||+|||||++...|++.++
T Consensus 7 i~i~GptgsGKt~la~~la~~~~ 29 (307)
T PRK00091 7 IVIVGPTASGKTALAIELAKRLN 29 (307)
T ss_pred EEEECCCCcCHHHHHHHHHHhCC
Confidence 56779999999999999887763
No 274
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=90.53 E-value=0.15 Score=44.34 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=17.7
Q ss_pred ccccCCCchhhHHHHHHHHH
Q psy4734 188 VGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 188 ~g~~gsGKTt~~~~L~~al~ 207 (367)
+|++||||||+.+.|+..++
T Consensus 1 ~G~sGsGKSTla~~la~~l~ 20 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH 20 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC
Confidence 49999999999999988773
No 275
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.52 E-value=0.62 Score=48.21 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=54.3
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc-cccc--cceec--ccccccccchHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQL--YGEFD--SASHEWRDGILAKT 256 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t-~~~l--~G~~d--~~~~~W~dGil~~~ 256 (367)
...+.|+||+|+||||+...|+..+..... ..+|.+...++..+. ..++ ||... +.......+-+..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~-------gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~a 422 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHA-------PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDL 422 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcC-------CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHH
Confidence 345778899999999999888876543210 123544444443321 1112 11110 01111233445566
Q ss_pred HHHHhcCCCCCceEEEEcCC----CChHhhhhhh---hccCCCCceeeccc
Q psy4734 257 FREMAVSTTPDRKWIMFDGP----IDAVWIENMN---TVLDDNKKLCLING 300 (367)
Q Consensus 257 ~r~~~~~~~~~~~wivfDG~----~d~~wie~ln---svlddn~~l~L~~g 300 (367)
+++. ...++|++|.+ .|...++.|. ........|.++.+
T Consensus 423 L~~l-----~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAt 468 (559)
T PRK12727 423 LERL-----RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPAN 468 (559)
T ss_pred HHHh-----ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECC
Confidence 6654 24689999944 3555454443 22234445555443
No 276
>KOG0736|consensus
Probab=90.49 E-value=1.1 Score=47.94 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.8
Q ss_pred HHHhhhhhheeccccCCCchhhHHHHH
Q psy4734 177 KIFEVRHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 177 k~~~~~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
+=+.-|.|+++.||||+|||-+.|..|
T Consensus 700 sglrkRSGILLYGPPGTGKTLlAKAVA 726 (953)
T KOG0736|consen 700 SGLRKRSGILLYGPPGTGKTLLAKAVA 726 (953)
T ss_pred ccccccceeEEECCCCCchHHHHHHHH
Confidence 334559999999999999999988866
No 277
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.42 E-value=0.63 Score=46.83 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=19.6
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-++++||+|+||||+...|+...
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999998888755
No 278
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=90.42 E-value=0.16 Score=44.91 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||+.+.++..+
T Consensus 6 i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 5678999999999999988755
No 279
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.39 E-value=0.32 Score=52.57 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.4
Q ss_pred hhhheeccccCCCchhhHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
...++++||||+|||++.+.|+..+.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999987664
No 280
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.36 E-value=0.15 Score=45.48 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=18.3
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||+.+.|.+..
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 5678999999999999886543
No 281
>PRK00889 adenylylsulfate kinase; Provisional
Probab=90.34 E-value=0.18 Score=44.08 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.2
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++|++|+||||+.+.|+..+.
T Consensus 7 i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 7 VWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56779999999999999998775
No 282
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=90.34 E-value=0.27 Score=50.81 Aligned_cols=120 Identities=13% Similarity=0.209 Sum_probs=69.0
Q ss_pred hHHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceeccc---cc
Q psy4734 174 HLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA---SH 246 (367)
Q Consensus 174 ~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~~---~~ 246 (367)
.+.++-.....|++.|++|+||+++.+.+...-. .. .-.+..+|+.+++ -.+|||.-... ..
T Consensus 202 ~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~----r~-------~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~ 270 (509)
T PRK05022 202 EIEVVAASDLNVLILGETGVGKELVARAIHAASP----RA-------DKPLVYLNCAALPESLAESELFGHVKGAFTGAI 270 (509)
T ss_pred HHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC----cC-------CCCeEEEEcccCChHHHHHHhcCccccccCCCc
Confidence 3455556777899999999999999877654321 11 1234567877775 34678853210 00
Q ss_pred ccccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecC
Q psy4734 247 EWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 316 (367)
Q Consensus 247 ~W~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~ 316 (367)
.-..|.+ .. ...-.+++| +.+++.--..|-.++++...-.+.+.. ..+.++|+|+-++
T Consensus 271 ~~~~g~~----~~------a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~RiI~~t~ 330 (509)
T PRK05022 271 SNRSGKF----EL------ADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDR--SLRVDVRVIAATN 330 (509)
T ss_pred ccCCcch----hh------cCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCc--ceecceEEEEecC
Confidence 1122322 11 122458888 445555555666677766554554333 3445788888764
No 283
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=90.33 E-value=0.14 Score=48.82 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|+|||||||+.+.|++.+
T Consensus 5 iil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHC
Confidence 5677999999999999988765
No 284
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=90.31 E-value=0.083 Score=44.30 Aligned_cols=99 Identities=21% Similarity=0.384 Sum_probs=49.4
Q ss_pred heeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccce--eccccc--ccccchHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGE--FDSASH--EWRDGILAKTFREM 260 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~--~d~~~~--~W~dGil~~~~r~~ 260 (367)
+++.|+||.|||++.+.|+++++.- ..+|. ..|. +.-.++.|. +|..++ +|..|.+-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~---------f~RIq---~tpd-llPsDi~G~~v~~~~~~~f~~~~GPif------ 62 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS---------FKRIQ---FTPD-LLPSDILGFPVYDQETGEFEFRPGPIF------ 62 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-----------EEEEE-----TT---HHHHHEEEEEETTTTEEEEEE-TT-------
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc---------eeEEE---ecCC-CCcccceeeeeeccCCCeeEeecChhh------
Confidence 5788999999999999999886421 11222 3344 445667775 455443 35556432
Q ss_pred hcCCCCCceEEEEcCCCChH-------hhhhhhhccCCCCceeecccceeecCCCCeEEEecCC
Q psy4734 261 AVSTTPDRKWIMFDGPIDAV-------WIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN 317 (367)
Q Consensus 261 ~~~~~~~~~wivfDG~~d~~-------wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~ 317 (367)
..++++| .++.. ..|.|. .+.+++ .|+..++|+.+ +++-|.|
T Consensus 63 -------~~ill~D-EiNrappktQsAlLeam~-----Er~Vt~-~g~~~~lp~pf-~ViATqN 111 (131)
T PF07726_consen 63 -------TNILLAD-EINRAPPKTQSALLEAME-----ERQVTI-DGQTYPLPDPF-FVIATQN 111 (131)
T ss_dssp -------SSEEEEE-TGGGS-HHHHHHHHHHHH-----HSEEEE-TTEEEE--SS--EEEEEE-
T ss_pred -------hceeeec-ccccCCHHHHHHHHHHHH-----cCeEEe-CCEEEECCCcE-EEEEecC
Confidence 2467777 44332 334333 334444 37788888877 4444433
No 285
>PRK04182 cytidylate kinase; Provisional
Probab=90.26 E-value=0.13 Score=44.62 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=19.7
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||+.+.|++.++
T Consensus 3 I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999987653
No 286
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=90.24 E-value=0.37 Score=46.23 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.7
Q ss_pred eeccccCCCchhhHHHHHH
Q psy4734 186 MVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 186 ~~~g~~gsGKTt~~~~L~~ 204 (367)
.+.||+|||||.+++-|..
T Consensus 91 ~VYGPTG~GKSqLlRNLis 109 (369)
T PF02456_consen 91 VVYGPTGSGKSQLLRNLIS 109 (369)
T ss_pred EEECCCCCCHHHHHHHhhh
Confidence 3569999999999987654
No 287
>PRK14529 adenylate kinase; Provisional
Probab=90.23 E-value=0.16 Score=46.76 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.3
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+++.|+|||||||..+.|++.++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 57789999999999999988764
No 288
>PRK07667 uridine kinase; Provisional
Probab=90.19 E-value=0.18 Score=45.16 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.8
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
|.+.|++||||||+.+.|++.++.
T Consensus 20 IgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 20 LGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999999988864
No 289
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=90.17 E-value=0.21 Score=42.44 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=20.6
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
++++|+.+|||||+++.|...+..
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~~ 26 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELKR 26 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhH
Confidence 578999999999999998877653
No 290
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=90.13 E-value=0.16 Score=44.73 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.||+||||||+.++++.-.
T Consensus 32 iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 32 IAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred EEEeCCCCccHHHHHHHHHhcc
Confidence 6678999999999999887543
No 291
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.09 E-value=0.22 Score=43.75 Aligned_cols=27 Identities=30% Similarity=0.526 Sum_probs=20.4
Q ss_pred CceEEEEc--CCC---ChHhhhhhhhccCCCC
Q psy4734 267 DRKWIMFD--GPI---DAVWIENMNTVLDDNK 293 (367)
Q Consensus 267 ~~~wivfD--G~~---d~~wie~lnsvlddn~ 293 (367)
..+++|+| |++ .+.|.+.+..+||.++
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~ 126 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDSNK 126 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCTTS
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcCCC
Confidence 45799999 887 5679999999999544
No 292
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=90.09 E-value=0.16 Score=40.99 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=17.0
Q ss_pred heeccccCCCchhhHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~ 203 (367)
|.++|++|+||||+++.|.
T Consensus 2 V~iiG~~~~GKSTlin~l~ 20 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALT 20 (116)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5788999999999998876
No 293
>PRK14526 adenylate kinase; Provisional
Probab=90.07 E-value=0.18 Score=45.95 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|+|||||||..+.|++.+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999988765
No 294
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=90.04 E-value=0.43 Score=45.61 Aligned_cols=49 Identities=24% Similarity=0.424 Sum_probs=38.8
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC-ccccccce
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGE 240 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~-t~~~l~G~ 240 (367)
|-+-+.|+||+||||++..|...+.. .+.+|-+..|+|.+. |-+.+.|.
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~---------~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRE---------RGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHH---------CCcEEEEEEECCCCCCCCcccccc
Confidence 34667899999999999988776632 245788888999985 88888885
No 295
>PRK10436 hypothetical protein; Provisional
Probab=90.01 E-value=0.2 Score=51.10 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=23.0
Q ss_pred HHHHHhhhhhhe-eccccCCCchhhHHHHHHHH
Q psy4734 175 LKKIFEVRHGLM-VVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 175 l~k~~~~~~~v~-~~g~~gsGKTt~~~~L~~al 206 (367)
+.++....+|++ +.||+||||||++..+...+
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHHHHHHhh
Confidence 555666777855 55999999999876644444
No 296
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=90.01 E-value=0.67 Score=42.06 Aligned_cols=32 Identities=25% Similarity=0.191 Sum_probs=19.4
Q ss_pred HHhhhhhheeccccCCCchhhHHHHHHHHHHHHh
Q psy4734 178 IFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAA 211 (367)
Q Consensus 178 ~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~ 211 (367)
.+....-+++.||+|+|||.+ .++.|+..+..
T Consensus 15 al~~~~~v~~~G~AGTGKT~L--A~a~Al~~v~~ 46 (205)
T PF02562_consen 15 ALLNNDLVIVNGPAGTGKTFL--ALAAALELVKE 46 (205)
T ss_dssp HHHH-SEEEEE--TTSSTTHH--HHHHHHHHHHT
T ss_pred HHHhCCeEEEECCCCCcHHHH--HHHHHHHHHHh
Confidence 333556677789999999988 45556655543
No 297
>PRK06526 transposase; Provisional
Probab=89.98 E-value=0.19 Score=47.15 Aligned_cols=87 Identities=13% Similarity=0.147 Sum_probs=49.1
Q ss_pred hhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHH
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~ 259 (367)
....+++++||+|+|||++...++..+-.. +.+|.+ .+..++...+. ..+.+|-+...+++
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~---------g~~v~f-------~t~~~l~~~l~---~~~~~~~~~~~l~~ 156 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQA---------GHRVLF-------ATAAQWVARLA---AAHHAGRLQAELVK 156 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHC---------CCchhh-------hhHHHHHHHHH---HHHhcCcHHHHHHH
Confidence 456779999999999999988876544221 112221 23333333221 12344555555555
Q ss_pred HhcCCCCCceEEEEcC----CCChHhhhhhhhccC
Q psy4734 260 MAVSTTPDRKWIMFDG----PIDAVWIENMNTVLD 290 (367)
Q Consensus 260 ~~~~~~~~~~wivfDG----~~d~~wie~lnsvld 290 (367)
. .....+|+|. +.+..+.+-|..+++
T Consensus 157 l-----~~~dlLIIDD~g~~~~~~~~~~~L~~li~ 186 (254)
T PRK06526 157 L-----GRYPLLIVDEVGYIPFEPEAANLFFQLVS 186 (254)
T ss_pred h-----ccCCEEEEcccccCCCCHHHHHHHHHHHH
Confidence 4 2347889983 234555555666654
No 298
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=89.95 E-value=0.16 Score=50.97 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.8
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
++++++||||+|||++.+.|++.+
T Consensus 48 ~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 678999999999999999998876
No 299
>PRK13946 shikimate kinase; Provisional
Probab=89.79 E-value=0.19 Score=44.57 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.8
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..++++|.+||||||+.+.|++.++
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3578889999999999999998873
No 300
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=89.79 E-value=0.3 Score=45.75 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=31.2
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC-ccccccce
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGE 240 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~-t~~~l~G~ 240 (367)
-+-+.||||+||||++..|...+..- +.+|-+.-++|.+. |-+.++|.
T Consensus 31 ~iGiTG~PGaGKSTli~~l~~~~~~~---------g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 31 VIGITGPPGAGKSTLIDALIRELRER---------GKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHHHHT---------T--EEEEEE-GGGGCC---SS--
T ss_pred EEEeeCCCCCcHHHHHHHHHHHHhhc---------CCceEEEEECCCCCCCCCccccc
Confidence 35578999999999999988877532 34688888999974 77888885
No 301
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.77 E-value=0.17 Score=45.61 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++++..+
T Consensus 28 ~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 28 YGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999987544
No 302
>KOG0743|consensus
Probab=89.76 E-value=0.14 Score=51.20 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.3
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.|-++.||||+|||+.+.++|..|
T Consensus 234 wKRGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 234 WKRGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred hhccceeeCCCCCCHHHHHHHHHhhc
Confidence 45788999999999999998887665
No 303
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=89.72 E-value=0.62 Score=48.33 Aligned_cols=156 Identities=14% Similarity=0.156 Sum_probs=83.1
Q ss_pred hHHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCcc----ccccceecc---ccc
Q psy4734 174 HLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITM----GQLYGEFDS---ASH 246 (367)
Q Consensus 174 ~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~----~~l~G~~d~---~~~ 246 (367)
++.+.......|++.|++|+||+.+.+.+..+- ... .-.+..+|+.+++- .+|||+... ...
T Consensus 219 ~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s----~r~-------~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~ 287 (520)
T PRK10820 219 QARKLAMLDAPLLITGDTGTGKDLLAYACHLRS----PRG-------KKPFLALNCASIPDDVVESELFGHAPGAYPNAL 287 (520)
T ss_pred HHHHHhCCCCCEEEECCCCccHHHHHHHHHHhC----CCC-------CCCeEEeccccCCHHHHHHHhcCCCCCCcCCcc
Confidence 455555667779999999999999987754321 111 11244578887753 467885421 111
Q ss_pred ccccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCC-CCc---
Q psy4734 247 EWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-LEF--- 320 (367)
Q Consensus 247 ~W~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~-l~~--- 320 (367)
+...|++.. + ..--+++| +.+++.--..|-.++.+...-.+ |+.-..+.++|+|+-++. +..
T Consensus 288 ~~~~g~~e~----a------~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~vRiI~st~~~l~~l~~ 355 (520)
T PRK10820 288 EGKKGFFEQ----A------NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRV--GEDHEVHVDVRVICATQKNLVELVQ 355 (520)
T ss_pred cCCCChhhh----c------CCCEEEEeChhhCCHHHHHHHHHHHhcCCcccC--CCCcceeeeeEEEEecCCCHHHHHH
Confidence 344554422 1 12347788 33455544555556666544333 322234557888885532 211
Q ss_pred ---cCcchhhce--eeEEecccC---CchHHHHHHHHHHh
Q psy4734 321 ---ASPATVSRV--GMIYFELKC---ISWTTFFLSYQNEL 352 (367)
Q Consensus 321 ---asPatvsRc--g~v~~~~~~---~~~~~~~~swl~~~ 352 (367)
..+....|. ..|.+.|-. =.-.+++..+++..
T Consensus 356 ~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~ 395 (520)
T PRK10820 356 KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARF 395 (520)
T ss_pred cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHH
Confidence 234455553 344554421 12455666666544
No 304
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=89.72 E-value=0.19 Score=45.05 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=19.6
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-++++||+|+||||.++.+....
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhh
Confidence 336788999999999999876554
No 305
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=89.69 E-value=0.18 Score=51.07 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.0
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...+++|.||||+|||++.+.++..+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 44679999999999999999887654
No 306
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=89.65 E-value=0.17 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.249 Sum_probs=19.4
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||++++++..+
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 36678999999999999988654
No 307
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=89.62 E-value=0.18 Score=45.83 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=19.2
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||++++++..+
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 35678999999999999987644
No 308
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=89.62 E-value=0.2 Score=44.59 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.||+|+||||+.+.|.+..
T Consensus 7 ~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 7 IVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 3456999999999999988766
No 309
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=89.61 E-value=0.25 Score=41.57 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=19.4
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+++.|++|+|||++...++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 467899999999998888766543
No 310
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.60 E-value=0.28 Score=48.69 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=21.4
Q ss_pred hhhh-heeccccCCCchhhHHHHHHHHHH
Q psy4734 181 VRHG-LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 181 ~~~~-v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
...| +++.||+||||||+++.|...+..
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3455 456799999999999888776643
No 311
>PRK08356 hypothetical protein; Provisional
Probab=89.53 E-value=0.2 Score=44.82 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=16.5
Q ss_pred heeccccCCCchhhHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~ 203 (367)
+.++|||||||||+.+.|+
T Consensus 8 i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 8 VGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4578999999999998884
No 312
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=89.51 E-value=0.19 Score=43.30 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=18.5
Q ss_pred hhhheeccccCCCchhhHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~ 204 (367)
..|+++.|++|+||||+...|.+
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~ 36 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIK 36 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999998655443
No 313
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.48 E-value=0.19 Score=45.31 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||++++|+..+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 29 FGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999988643
No 314
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=89.48 E-value=0.18 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.3
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++||||||++++++..+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36678999999999999987643
No 315
>PRK09862 putative ATP-dependent protease; Provisional
Probab=89.47 E-value=0.35 Score=49.82 Aligned_cols=136 Identities=13% Similarity=0.154 Sum_probs=78.2
Q ss_pred hhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEe-------------------C-CCCCccccccc
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKII-------------------N-PKSITMGQLYG 239 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~i-------------------n-pka~t~~~l~G 239 (367)
...+.++++|++|+|||++.+.+...+....... .+....| . +.+.|...|+|
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e-------~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~G 280 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEE-------ALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVG 280 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcE-------EEecchhhhhhccccccCCcCCCCccCCCccchHHHHhC
Confidence 3456688999999999999988775543222110 1111111 1 11234444555
Q ss_pred eecccccccccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCC
Q psy4734 240 EFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN 317 (367)
Q Consensus 240 ~~d~~~~~W~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~ 317 (367)
.= ...+-|.++. .+.-.+++| ...++.-.+.|...|++.....-..|..+..|.++++|--+.-
T Consensus 281 Gg----~~~~pG~l~~----------A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP 346 (506)
T PRK09862 281 GG----AIPGPGEISL----------AHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNP 346 (506)
T ss_pred CC----ceehhhHhhh----------ccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecC
Confidence 31 1122333222 123467778 3457777888888887776655555666677778877754432
Q ss_pred C---------------------CccCcchhhceee-EEecc
Q psy4734 318 L---------------------EFASPATVSRVGM-IYFEL 336 (367)
Q Consensus 318 l---------------------~~asPatvsRcg~-v~~~~ 336 (367)
- ...|++.+.|+.| |.+++
T Consensus 347 ~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~ 387 (506)
T PRK09862 347 SPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPL 387 (506)
T ss_pred ccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCC
Confidence 2 2366788899988 44543
No 316
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=89.47 E-value=0.18 Score=45.23 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 29 IALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6678999999999999987543
No 317
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=89.46 E-value=0.23 Score=43.84 Aligned_cols=23 Identities=35% Similarity=0.305 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++|++||||||+++.|...+.
T Consensus 9 i~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 9 LAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred EEEECCCCChHHHHHHHHHHHHh
Confidence 45789999999999998887764
No 318
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=89.46 E-value=0.18 Score=44.60 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=16.5
Q ss_pred heeccccCCCchhhHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~ 203 (367)
+.++||+||||||+++++.
T Consensus 24 ~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 24 VVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5578999999999999873
No 319
>PRK06620 hypothetical protein; Validated
Probab=89.46 E-value=0.19 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=18.0
Q ss_pred hhheeccccCCCchhhHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~ 204 (367)
..+++.||+|+|||++.++.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~ 66 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQN 66 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999886443
No 320
>PRK01184 hypothetical protein; Provisional
Probab=89.44 E-value=0.2 Score=44.05 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=17.5
Q ss_pred ceEEEEcCCCChHhhhhhhhccC
Q psy4734 268 RKWIMFDGPIDAVWIENMNTVLD 290 (367)
Q Consensus 268 ~~wivfDG~~d~~wie~lnsvld 290 (367)
..-+|+||.....+++.+..+++
T Consensus 80 ~~~vvidg~r~~~e~~~~~~~~~ 102 (184)
T PRK01184 80 DEVVVIDGVRGDAEVEYFRKEFP 102 (184)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCC
Confidence 46799999878888887766554
No 321
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.44 E-value=0.18 Score=44.71 Aligned_cols=23 Identities=43% Similarity=0.449 Sum_probs=19.0
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||++++++..+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 36688999999999999877543
No 322
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=89.43 E-value=0.24 Score=48.11 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=21.5
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.-++++||+|+||||+...|+..+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3477889999999999999998775
No 323
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=89.41 E-value=0.18 Score=43.52 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=16.3
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.+.|.+|+||||+++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 467899999999999988865
No 324
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=89.41 E-value=0.22 Score=45.60 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.7
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.||+||||||+.+.|++.++
T Consensus 5 i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 5 IAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999987663
No 325
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=89.40 E-value=0.2 Score=44.57 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=17.3
Q ss_pred hhhheeccccCCCchhhHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~ 204 (367)
+..++++||+|||||+++..|..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~ 25 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVN 25 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhc
Confidence 56789999999999999877653
No 326
>KOG0744|consensus
Probab=89.39 E-value=0.2 Score=48.41 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=21.4
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
...-+++.||||+|||++.+.|+..|+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 334466779999999999999887664
No 327
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.37 E-value=0.25 Score=44.78 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=20.9
Q ss_pred hhhheeccccCCCchhhHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...+++.||+|+|||++.+.++...
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4568889999999999998877654
No 328
>KOG1534|consensus
Probab=89.36 E-value=0.27 Score=44.64 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=29.0
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI 232 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~ 232 (367)
-+.++.||+||||||-...+......+++ .+....++|.|.
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gR---------s~~vVNLDPAae 44 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGR---------SVHVVNLDPAAE 44 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCc---------eeEEeecCHHHH
Confidence 35677899999999988888777766644 344445566654
No 329
>PHA00729 NTP-binding motif containing protein
Probab=89.35 E-value=0.23 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.8
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.+++.|+||+|||++...|+.++.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478889999999999999888764
No 330
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=89.34 E-value=0.25 Score=47.00 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=21.6
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
.-++|+||+|+||||++..|+..+..
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35778899999999999988877643
No 331
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=89.32 E-value=0.21 Score=43.14 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
|.+.||+||||||+...+..++
T Consensus 31 vtlMGPSGcGKSTLls~~~G~L 52 (213)
T COG4136 31 VTLMGPSGCGKSTLLSWMIGAL 52 (213)
T ss_pred EEEECCCCccHHHHHHHHHhhc
Confidence 6788999999999988877666
No 332
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=89.31 E-value=0.19 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++|+..+
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 32 VFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6678999999999999988654
No 333
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=89.30 E-value=0.19 Score=44.49 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+-++||+||||||++++++..+
T Consensus 21 ~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 21 LALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999887543
No 334
>PRK08939 primosomal protein DnaI; Reviewed
Probab=89.27 E-value=0.21 Score=48.21 Aligned_cols=84 Identities=19% Similarity=0.346 Sum_probs=50.4
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHh
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 261 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~ 261 (367)
..|+.+.|++|+|||.+...++..+... +..|.+.. +.+|+..+- ..+.||-+...++..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~---------g~~v~~~~-------~~~l~~~lk---~~~~~~~~~~~l~~l- 215 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKK---------GVSSTLLH-------FPEFIRELK---NSISDGSVKEKIDAV- 215 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc---------CCCEEEEE-------HHHHHHHHH---HHHhcCcHHHHHHHh-
Confidence 4689999999999999998888776522 12343322 233333321 234555566666655
Q ss_pred cCCCCCceEEEEcCCC----ChHhh--hhhhhccC
Q psy4734 262 VSTTPDRKWIMFDGPI----DAVWI--ENMNTVLD 290 (367)
Q Consensus 262 ~~~~~~~~wivfDG~~----d~~wi--e~lnsvld 290 (367)
.....+|+| ++ -..|. +-|..+++
T Consensus 216 ----~~~dlLiID-DiG~e~~s~~~~~~ll~~Il~ 245 (306)
T PRK08939 216 ----KEAPVLMLD-DIGAEQMSSWVRDEVLGVILQ 245 (306)
T ss_pred ----cCCCEEEEe-cCCCccccHHHHHHHHHHHHH
Confidence 345899999 33 33465 34565554
No 335
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=89.25 E-value=0.24 Score=47.43 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.1
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|++||||||+.++|...+..
T Consensus 65 IGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 65 ISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 446799999999999998877754
No 336
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=89.25 E-value=0.19 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.3
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+||||||++++|+..+
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 36678999999999999987654
No 337
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=89.24 E-value=0.21 Score=44.69 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 3467999999999999988875
No 338
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=89.23 E-value=0.67 Score=40.06 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=30.5
Q ss_pred ccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccc
Q psy4734 188 VGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYG 239 (367)
Q Consensus 188 ~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G 239 (367)
.+.+|+||||+.-.|+.++... +.+|.....+|..-+...++|
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~---------g~~vllvD~D~~~~~~~~~~~ 48 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQL---------GYKVVLIDADLGLRNLDLILG 48 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhC---------CCeEEEEeCCCCCCCchhhcc
Confidence 3678999999999999888643 346777777886444444554
No 339
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=89.18 E-value=0.2 Score=45.09 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+-++||+|+||||++++|+..+
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 30 VLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6678999999999999987644
No 340
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=89.17 E-value=0.2 Score=45.54 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=19.7
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+-+-||+||||||+.+.|++.|+
T Consensus 7 IAIDGPagsGKsTvak~lA~~Lg 29 (222)
T COG0283 7 IAIDGPAGSGKSTVAKILAEKLG 29 (222)
T ss_pred EEEeCCCccChHHHHHHHHHHhC
Confidence 44669999999999999998773
No 341
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=89.15 E-value=1.5 Score=49.87 Aligned_cols=23 Identities=35% Similarity=0.212 Sum_probs=19.1
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++|.||||+++.+...+
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~~l 231 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFSRL 231 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHHHH
Confidence 36678999999999999886544
No 342
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.15 E-value=0.2 Score=46.00 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++|+..+
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 29 LAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6688999999999999987544
No 343
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.14 E-value=0.22 Score=51.13 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=24.0
Q ss_pred HHHHHhhhhhh-eeccccCCCchhhHHHHHHHH
Q psy4734 175 LKKIFEVRHGL-MVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 175 l~k~~~~~~~v-~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++....+|+ ++.||+||||||+++.+...+
T Consensus 234 l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 234 FERLIRRPHGIILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred HHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhcc
Confidence 55667777885 567999999999987654444
No 344
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.11 E-value=0.42 Score=47.67 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=28.7
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCC
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK 230 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpk 230 (367)
.-++++||+|+||||++.-|+..+...... ++.+|.+..+++-
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~-----~g~~V~lit~Dt~ 217 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDD-----KSLNIKIITIDNY 217 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc-----CCCeEEEEeccCc
Confidence 347789999999999999888776543211 1235655555553
No 345
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.10 E-value=0.2 Score=45.85 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.0
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+.++||+|+||||++++|+..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 346688999999999999988654
No 346
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=89.08 E-value=0.2 Score=45.47 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++|+..+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 29 VALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6678999999999999987554
No 347
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=89.08 E-value=0.2 Score=45.15 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||++++++..+
T Consensus 31 ~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 31 LFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6688999999999999987644
No 348
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=89.08 E-value=0.21 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=19.3
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||++++|+..+
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36688999999999999987644
No 349
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=89.07 E-value=0.23 Score=43.79 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.2
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+.|+||+|+|||++.+.|.+..
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 457789999999999999887654
No 350
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=89.07 E-value=0.16 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=19.7
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+-++||.||||||++++++..+.
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccCC
Confidence 55779999999999999887664
No 351
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=89.07 E-value=0.3 Score=51.21 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=23.5
Q ss_pred HHHHHhhhhhhe-eccccCCCchhhHHHHHHHH
Q psy4734 175 LKKIFEVRHGLM-VVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 175 l~k~~~~~~~v~-~~g~~gsGKTt~~~~L~~al 206 (367)
+.++....+|++ +.||+||||||++..+...+
T Consensus 308 l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~ 340 (564)
T TIGR02538 308 FLEAIHKPQGMVLVTGPTGSGKTVSLYTALNIL 340 (564)
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 455566677865 66999999999976655544
No 352
>PRK06761 hypothetical protein; Provisional
Probab=89.02 E-value=0.22 Score=47.50 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.2
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||+.+.|++.+.
T Consensus 6 IvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 6 IIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 56779999999999999998774
No 353
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=89.00 E-value=0.38 Score=43.15 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=24.3
Q ss_pred HHHHHhhhhh-heeccccCCCchhhHHHHHHHHHH
Q psy4734 175 LKKIFEVRHG-LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 175 l~k~~~~~~~-v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+..++.+... ..+.|++|+|||++++.+..++..
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~ 44 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEA 44 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 3344444443 556699999999999988877755
No 354
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.98 E-value=0.21 Score=45.06 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++|+..+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 29 LALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6688999999999999987644
No 355
>KOG2035|consensus
Probab=88.98 E-value=1.8 Score=41.08 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=73.0
Q ss_pred heeccccCCCchhhHHHHHHHHHHHHhhh--c-----cccccceeEEEEeCCCCCccccccceecccccccccc-hHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIAAKK--S-----ATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG-ILAKT 256 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~~~~--~-----~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dG-il~~~ 256 (367)
+++.||+|+||-|.+-+|-+.+--.+-.+ . .++...++++..+.. ..+=.++|...+..|- +.-.+
T Consensus 37 ll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS------~yHlEitPSDaG~~DRvViQel 110 (351)
T KOG2035|consen 37 LLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS------NYHLEITPSDAGNYDRVVIQEL 110 (351)
T ss_pred EEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc------cceEEeChhhcCcccHHHHHHH
Confidence 67889999999888777655442211000 0 112222233222111 1111233433333333 56667
Q ss_pred HHHHhcCCC------CCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhcee
Q psy4734 257 FREMAVSTT------PDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG 330 (367)
Q Consensus 257 ~r~~~~~~~------~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg 330 (367)
+.+.+.... ..-|=+|+. ..|..--|.=..+ .+++ | +-..++|+|.=..+++.+.|+.-|||-
T Consensus 111 lKevAQt~qie~~~qr~fKvvvi~-ead~LT~dAQ~aL---RRTM-----E--kYs~~~RlIl~cns~SriIepIrSRCl 179 (351)
T KOG2035|consen 111 LKEVAQTQQIETQGQRPFKVVVIN-EADELTRDAQHAL---RRTM-----E--KYSSNCRLILVCNSTSRIIEPIRSRCL 179 (351)
T ss_pred HHHHHhhcchhhccccceEEEEEe-chHhhhHHHHHHH---HHHH-----H--HHhcCceEEEEecCcccchhHHhhhee
Confidence 777765421 122445554 3333322221111 0000 1 346789999999999999999999999
Q ss_pred eEEeccc
Q psy4734 331 MIYFELK 337 (367)
Q Consensus 331 ~v~~~~~ 337 (367)
+|.+.+.
T Consensus 180 ~iRvpap 186 (351)
T KOG2035|consen 180 FIRVPAP 186 (351)
T ss_pred EEeCCCC
Confidence 9999743
No 356
>PRK13531 regulatory ATPase RavA; Provisional
Probab=88.93 E-value=0.4 Score=49.02 Aligned_cols=33 Identities=9% Similarity=-0.044 Sum_probs=27.1
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHHH
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+-.+......+++.||||+|||++.+.|+.+..
T Consensus 32 ll~aalag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 32 CLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred HHHHHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 444556777799999999999999999888764
No 357
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=88.89 E-value=0.53 Score=44.19 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=19.0
Q ss_pred hhhhheeccccCCCchhhHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~a 205 (367)
...-+.+.|.+|.|||++...++..
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CeEEEEEEcCCcCCcceeeeecccc
Confidence 3455778899999999998765543
No 358
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=88.88 E-value=0.32 Score=52.19 Aligned_cols=119 Identities=15% Similarity=0.233 Sum_probs=66.3
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceeccc-ccc--
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA-SHE-- 247 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~~-~~~-- 247 (367)
+.+.-.....|++.|++|+|||++.+.+... .... .-.+..+|+.+++ -.++||..... ++.
T Consensus 392 ~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~----s~r~-------~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~ 460 (686)
T PRK15429 392 VEMVAQSDSTVLILGETGTGKELIARAIHNL----SGRN-------NRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA 460 (686)
T ss_pred HHHHhCCCCCEEEECCCCcCHHHHHHHHHHh----cCCC-------CCCeEEEecccCChhHhhhhhcCccccccccccc
Confidence 3344456667999999999999987765442 2111 1124456776664 34678753211 010
Q ss_pred cccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecC
Q psy4734 248 WRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 316 (367)
Q Consensus 248 W~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~ 316 (367)
-.-|.+ .. .+.--+++| +.++..--..|-.++++...-.+.+.. ..+.++|+|+-++
T Consensus 461 ~~~g~l----e~------a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~--~~~~~~RiI~~t~ 519 (686)
T PRK15429 461 QRIGRF----EL------ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNK--IIQTDVRLIAATN 519 (686)
T ss_pred chhhHH----Hh------cCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCC--cccceEEEEEeCC
Confidence 011211 11 122458888 445666666777777776554444333 3456788887663
No 359
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=88.86 E-value=0.22 Score=44.88 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++|+..+
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 29 VVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6678999999999999988654
No 360
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.83 E-value=0.22 Score=45.82 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++|+..+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 30 VALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 6678999999999999988654
No 361
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=88.82 E-value=0.26 Score=41.03 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=26.0
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHHHHH
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
+.+.+....-+.+.|+-|+||||..+.++++++.-
T Consensus 8 l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 8 LAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 44445555568888999999999999999988543
No 362
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=88.79 E-value=0.22 Score=45.15 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++++..+
T Consensus 34 ~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 34 VAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6678999999999999987654
No 363
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=88.77 E-value=0.23 Score=51.15 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.4
Q ss_pred hhhhheeccccCCCchhhHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~a 205 (367)
...|+++.||||+|||++.+.++..
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988754
No 364
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.75 E-value=0.23 Score=43.65 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=19.5
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-+.++|++|+||||++++|+..+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 336688999999999999987543
No 365
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.74 E-value=0.22 Score=45.19 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++++..+
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 33 VALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6678999999999999987543
No 366
>PRK09183 transposase/IS protein; Provisional
Probab=88.71 E-value=0.26 Score=46.33 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=21.7
Q ss_pred hhhhhheeccccCCCchhhHHHHHHHH
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.....++++||+|+|||++...++...
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 345678899999999999998886543
No 367
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.71 E-value=0.23 Score=45.14 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++++..+
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 29 FGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6688999999999999987643
No 368
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=88.68 E-value=0.23 Score=46.35 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.0
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.+.||+|+||||+.+.+...+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhc
Confidence 36788999999999998876554
No 369
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=88.67 E-value=0.23 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=19.4
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++|+||||++++|+..+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36688999999999999988644
No 370
>PLN02674 adenylate kinase
Probab=88.65 E-value=0.22 Score=46.44 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.9
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.+++.|||||||+|..+.|++.+
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 37788999999999999888765
No 371
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=88.61 E-value=0.29 Score=44.08 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=20.1
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+.+.||+|+||||++++++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 446788999999999999997644
No 372
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=88.53 E-value=0.23 Score=44.94 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++++..+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 31 FGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6688999999999999988654
No 373
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=88.51 E-value=0.48 Score=44.91 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.2
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++++|++|+||||+...|+..+.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4577889999999999988887764
No 374
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=88.48 E-value=0.23 Score=41.37 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=16.9
Q ss_pred heeccccCCCchhhHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~ 204 (367)
+.++|++|+|||++++.+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~ 21 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG 21 (159)
T ss_pred EEEEcCCCCCHHHHHHHHcc
Confidence 56889999999999887653
No 375
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=88.46 E-value=0.23 Score=45.15 Aligned_cols=22 Identities=41% Similarity=0.446 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++|+..+
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 34 LGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6678999999999999987543
No 376
>PRK04132 replication factor C small subunit; Provisional
Probab=88.46 E-value=1.3 Score=48.50 Aligned_cols=112 Identities=18% Similarity=0.248 Sum_probs=68.4
Q ss_pred ccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC-ccccccceecccccccccchHHHHHHHHhcCC---C
Q psy4734 190 ESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGEFDSASHEWRDGILAKTFREMAVST---T 265 (367)
Q Consensus 190 ~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~-t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~~---~ 265 (367)
|.+-||||++++|++.+-- . .....+..+|+... ..+ .+-.++.+++... +
T Consensus 574 Ph~lGKTT~A~ala~~l~g--~-------~~~~~~lElNASd~rgid----------------~IR~iIk~~a~~~~~~~ 628 (846)
T PRK04132 574 PTVLHNTTAALALARELFG--E-------NWRHNFLELNASDERGIN----------------VIREKVKEFARTKPIGG 628 (846)
T ss_pred CCcccHHHHHHHHHHhhhc--c-------cccCeEEEEeCCCcccHH----------------HHHHHHHHHHhcCCcCC
Confidence 8899999999998876521 0 00112334566542 111 2333333333221 2
Q ss_pred CCceEEEEcCCCChHhhhhhhhccCCCCceeecccceee-cCCCCeEEEecCCCCccCcchhhceeeEEecccC
Q psy4734 266 PDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIK-MSNTMNLIFECENLEFASPATVSRVGMIYFELKC 338 (367)
Q Consensus 266 ~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~-l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~ 338 (367)
...+-+|+| .+|..-.+.-|.++. .+. .+.+++||+-+.+.....|+..|||-++.+.+-.
T Consensus 629 ~~~KVvIID-EaD~Lt~~AQnALLk-----------~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls 690 (846)
T PRK04132 629 ASFKIIFLD-EADALTQDAQQALRR-----------TMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 690 (846)
T ss_pred CCCEEEEEE-CcccCCHHHHHHHHH-----------HhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCC
Confidence 245899999 555444444444321 122 2457889999999999999999999999998754
No 377
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=88.45 E-value=0.22 Score=44.97 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+-++||+|+||||++++|+..+
T Consensus 28 ~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 28 LAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6678999999999999987543
No 378
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=88.44 E-value=0.23 Score=45.63 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.6
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.++||+||||||++++|+..
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 29 HAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 668899999999999998764
No 379
>PRK03846 adenylylsulfate kinase; Provisional
Probab=88.43 E-value=0.29 Score=43.81 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=20.3
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-+.++|++||||||+.+.|+..+.
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 356779999999999999988774
No 380
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=88.42 E-value=0.36 Score=41.90 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=21.6
Q ss_pred heeccccCCCchhhHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
+.|.|.+||||||+.+.|.+.|...
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5678999999999999999888654
No 381
>PRK12377 putative replication protein; Provisional
Probab=88.41 E-value=0.37 Score=45.08 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=22.4
Q ss_pred hhhheeccccCCCchhhHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..+++|.|++|+|||.+...++..+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999998887764
No 382
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=88.32 E-value=0.23 Score=45.57 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++|+..+
T Consensus 29 ~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 29 HGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6678999999999999987544
No 383
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=88.28 E-value=0.25 Score=45.03 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++++..+
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 29 TALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6678999999999999988765
No 384
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.24 E-value=0.25 Score=45.61 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
|-++|++|+||||++++++..
T Consensus 33 VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred EEEECCCCCcHHHHHHHHhcc
Confidence 567899999999999998864
No 385
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=88.21 E-value=0.25 Score=45.28 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++|+..+
T Consensus 38 ~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 38 MAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6678999999999999988654
No 386
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=88.21 E-value=0.25 Score=44.65 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++|+..+
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 34 TGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 6688999999999999987644
No 387
>PRK13768 GTPase; Provisional
Probab=88.21 E-value=0.51 Score=44.18 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=28.6
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCC
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS 231 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka 231 (367)
.+.+.|++|+||||+...++.++... +.+|.+..++|..
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~---------g~~v~~i~~D~~~ 42 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQ---------GYDVAIVNLDPAV 42 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhc---------CCceEEEECCCcc
Confidence 35677999999999999988887543 2346666677754
No 388
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=88.15 E-value=0.3 Score=45.39 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=20.3
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-+.++||+|||||++++++.-.+.
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 356889999999999999887763
No 389
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.09 E-value=0.26 Score=43.84 Aligned_cols=21 Identities=43% Similarity=0.409 Sum_probs=18.2
Q ss_pred hheeccccCCCchhhHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~ 204 (367)
-+.++|++|+||||++++|+.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 366889999999999999874
No 390
>KOG3354|consensus
Probab=88.07 E-value=0.33 Score=42.05 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.3
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.+.+.|++||||||+-++|++.+.
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhC
Confidence 345679999999999999998875
No 391
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.07 E-value=0.27 Score=43.00 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=19.3
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++|+||||+.++|+..+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36688999999999999987543
No 392
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=88.03 E-value=0.26 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||++++|+..+
T Consensus 29 ~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 29 VGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6678999999999999988654
No 393
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=88.02 E-value=0.31 Score=44.41 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.1
Q ss_pred hhhheeccccCCCchhhHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...+++.|++|+|||++.+.++...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999887654
No 394
>PRK13948 shikimate kinase; Provisional
Probab=88.01 E-value=0.29 Score=43.55 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=21.2
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..+.++|.+||||||+-+.|++.++
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3467889999999999999988763
No 395
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=88.01 E-value=0.35 Score=47.34 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=29.6
Q ss_pred cchhhHHHHHhhhhhheeccccCCCchhhHHHHHHHH
Q psy4734 170 RVQPHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 170 ~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.....+..++..+..+++.|++|+||||+++.|...+
T Consensus 166 ~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i 202 (340)
T TIGR03819 166 GVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALV 202 (340)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccC
Confidence 3445577788888889999999999999988876544
No 396
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=87.99 E-value=0.27 Score=42.58 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.0
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++|+||||++++++..+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36678999999999999987543
No 397
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=87.98 E-value=1.9 Score=37.56 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=51.8
Q ss_pred eeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecc-cccccccchHHHHHHHHhcC-
Q psy4734 186 MVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDS-ASHEWRDGILAKTFREMAVS- 263 (367)
Q Consensus 186 ~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~-~~~~W~dGil~~~~r~~~~~- 263 (367)
-++|..+|||||++.-+...+.. + +.+|.+..-.+.. +.+|. .+..|+ +|++...
T Consensus 6 ~ivG~k~SGKTTLie~lv~~L~~---~------G~rVa~iKH~hh~-------~~~D~~GkDs~r-------~~~aGa~~ 62 (161)
T COG1763 6 GIVGYKNSGKTTLIEKLVRKLKA---R------GYRVATVKHAHHD-------FDLDKPGKDTYR-------HRKAGADQ 62 (161)
T ss_pred EEEecCCCChhhHHHHHHHHHHh---C------CcEEEEEEecCCC-------CCCCCCCCccch-------hhccccce
Confidence 46899999999998887766642 2 3345443222221 33443 333464 4444332
Q ss_pred --CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccc
Q psy4734 264 --TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGE 301 (367)
Q Consensus 264 --~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge 301 (367)
-...++|.++=+.-+ .-++.+.+.+++.--+.|--|=
T Consensus 63 ~v~~s~~~~~~~~~~~~-~~L~~vl~~l~~~~D~vLVEGF 101 (161)
T COG1763 63 VVVASDHRTALMTRTPD-RDLDAVLSRLDPLLDLVLVEGF 101 (161)
T ss_pred EEEecCCEEEEEEecCC-cCHHHHHHhcCcccCEEEEecc
Confidence 234567777766666 4456666667665345554443
No 398
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=87.96 E-value=0.37 Score=41.61 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=19.6
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++|++|+||||+...|...+.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999998888775
No 399
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.96 E-value=0.27 Score=43.79 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||+.++++..+
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 29 TYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5678999999999999987654
No 400
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=87.95 E-value=0.27 Score=47.16 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=19.4
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-+-+.||+||||||+++++|.-.
T Consensus 29 e~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 29 ELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred cEEEEECCCCCcHHHHHHHHhCcC
Confidence 336678999999999999987543
No 401
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=87.93 E-value=0.27 Score=42.23 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=18.4
Q ss_pred hhheeccccCCCchhhHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~ 204 (367)
.-+.++|++|+||||+++.+..
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~ 36 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLAS 36 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhc
Confidence 4478899999999999887753
No 402
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=87.92 E-value=0.26 Score=45.01 Aligned_cols=23 Identities=39% Similarity=0.320 Sum_probs=19.6
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++||||||++++|+..+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36788999999999999988654
No 403
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=87.90 E-value=0.15 Score=49.66 Aligned_cols=158 Identities=11% Similarity=0.142 Sum_probs=85.1
Q ss_pred hhhHHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceecc---c
Q psy4734 172 QPHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDS---A 244 (367)
Q Consensus 172 q~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~---~ 244 (367)
...+.++......|++.|++|+||+++.+.+... +... .-.+..+|+.+++ -.++||.-.. .
T Consensus 12 ~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~----s~r~-------~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~g 80 (329)
T TIGR02974 12 LEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL----SKRW-------QGPLVKLNCAALSENLLDSELFGHEAGAFTG 80 (329)
T ss_pred HHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh----cCcc-------CCCeEEEeCCCCChHHHHHHHhccccccccC
Confidence 3446666677788999999999999997765532 2111 1134567877765 2456774210 0
Q ss_pred ccccccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCC-CC--
Q psy4734 245 SHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-LE-- 319 (367)
Q Consensus 245 ~~~W~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~-l~-- 319 (367)
...-..|.+. ....--+++| +.++..--..|-.+|++...-.+.+.. ..+.++|+|+-++- +.
T Consensus 81 a~~~~~G~~~----------~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~--~~~~~~RiI~at~~~l~~~ 148 (329)
T TIGR02974 81 AQKRHQGRFE----------RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQ--TLQVDVRLVCATNADLPAL 148 (329)
T ss_pred cccccCCchh----------hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCc--eeccceEEEEechhhHHHH
Confidence 0011223221 1122347777 334555556666677665544443333 45567888887642 21
Q ss_pred ----ccCcchhhceee--EEecccC---CchHHHHHHHHHHh
Q psy4734 320 ----FASPATVSRVGM--IYFELKC---ISWTTFFLSYQNEL 352 (367)
Q Consensus 320 ----~asPatvsRcg~--v~~~~~~---~~~~~~~~swl~~~ 352 (367)
...+....|+.. |.+.|-. =.-..++..++...
T Consensus 149 ~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~ 190 (329)
T TIGR02974 149 AAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRM 190 (329)
T ss_pred hhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHH
Confidence 223556667644 3343311 01345566666543
No 404
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=87.88 E-value=0.27 Score=44.12 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.1
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++|+||||++++++..+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 36678999999999999987543
No 405
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=87.88 E-value=0.27 Score=45.29 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=19.3
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||++++|+..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36688999999999999987543
No 406
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=87.85 E-value=0.36 Score=41.98 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=21.1
Q ss_pred hheeccccCCCchhhHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
-+.++|++||||||++..|...+..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~~ 27 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALSA 27 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3668899999999999999887753
No 407
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=87.84 E-value=0.77 Score=45.45 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.1
Q ss_pred heeccccCCCchhhHHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIA 210 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~ 210 (367)
+++.|++|+|||++.+-+.+.+..-.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 78889999999999999888776543
No 408
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.82 E-value=0.28 Score=44.35 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=20.0
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-+.++|++|+||||++++|+..+
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 456788999999999999987544
No 409
>PRK14974 cell division protein FtsY; Provisional
Probab=87.81 E-value=0.36 Score=47.17 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=21.6
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
.-++++|++|+||||++..|+..+..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34778899999999999998877643
No 410
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=87.80 E-value=0.29 Score=44.73 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=18.7
Q ss_pred eeccccCCCchhhHHHHHHHHH
Q psy4734 186 MVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 186 ~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-+.|++||||||+.+.|...++
T Consensus 12 gIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 12 GIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEeCCCCCCHHHHHHHHHHHhC
Confidence 3569999999999999888775
No 411
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=87.73 E-value=0.35 Score=42.76 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.1
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIA 210 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~ 210 (367)
.+-|.|.+||||||+...|.+.|....
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 466789999999999999999887654
No 412
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.72 E-value=0.28 Score=45.17 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=19.3
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||++++|+..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36688999999999999987644
No 413
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=87.69 E-value=4.9 Score=42.41 Aligned_cols=28 Identities=25% Similarity=0.191 Sum_probs=21.3
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
..-.++.|+||+||||++..+..++...
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~~ 187 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVKQ 187 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4445667999999999988877766543
No 414
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.67 E-value=0.28 Score=44.69 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++|+..+
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 32 VAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEECCCCCCHHHHHHHHhcCc
Confidence 6688999999999999988654
No 415
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=87.62 E-value=0.29 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.1
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++|+||||++++|+..+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 36678999999999999987543
No 416
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=87.62 E-value=0.29 Score=45.45 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++|+..+
T Consensus 35 ~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 35 TALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6678999999999999988653
No 417
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.59 E-value=0.35 Score=47.98 Aligned_cols=26 Identities=27% Similarity=0.180 Sum_probs=21.2
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
....+.|+||+|+||||++..|+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34457789999999999998888765
No 418
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=87.57 E-value=0.31 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+|||++...|++.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~ 23 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKL 23 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999988887765
No 419
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=87.56 E-value=0.29 Score=45.58 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++|+..+
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6688999999999999987654
No 420
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.56 E-value=0.3 Score=43.73 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=18.9
Q ss_pred hhheeccccCCCchhhHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~a 205 (367)
.-+.++|++|+||||++++++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 33668899999999999987754
No 421
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=87.56 E-value=0.3 Score=42.87 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++|+||||++++|+..+
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 31 IALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 6678999999999999987654
No 422
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=87.55 E-value=0.3 Score=44.58 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=19.9
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-+.++|++|+||||++++++..+
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 346678999999999999988654
No 423
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=87.54 E-value=0.3 Score=44.65 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++|+..+
T Consensus 36 ~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 36 KLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 6678999999999999987643
No 424
>KOG0738|consensus
Probab=87.53 E-value=0.29 Score=48.28 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=18.6
Q ss_pred hhhheeccccCCCchhhHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
-.||+++||||+|||.+.+.++
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvA 266 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVA 266 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHH
Confidence 3679999999999998877655
No 425
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=87.53 E-value=0.31 Score=42.61 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++|+..+
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6678999999999999987654
No 426
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=87.51 E-value=0.33 Score=48.80 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.7
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++++||||+|||++.+.|++.+
T Consensus 51 ~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 51 KNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999999998875
No 427
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=87.51 E-value=0.29 Score=45.72 Aligned_cols=22 Identities=41% Similarity=0.443 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++|+..+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 30 LVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6678999999999999988544
No 428
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=87.50 E-value=0.39 Score=42.12 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=20.3
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
.+++||.|+||||++..+.-++..
T Consensus 22 ~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 22 NVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 456799999999999999888754
No 429
>PRK10908 cell division protein FtsE; Provisional
Probab=87.48 E-value=0.3 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=19.2
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||++++|+..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36688999999999999987543
No 430
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.46 E-value=0.34 Score=49.59 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=20.6
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-+.|+||+|+||||++..|+..+.
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHH
Confidence 367899999999999999997664
No 431
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=87.39 E-value=0.3 Score=43.05 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=19.3
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.+.++|++|+||||++++|+..+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36678999999999999987654
No 432
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=87.35 E-value=0.33 Score=43.49 Aligned_cols=81 Identities=12% Similarity=0.260 Sum_probs=42.2
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc--cccccc-----------eeccccccccc
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT--MGQLYG-----------EFDSASHEWRD 250 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t--~~~l~G-----------~~d~~~~~W~d 250 (367)
-+++.|++|||||+++..+...+. . . .+..|||..+- ..+.-+ ........|.+
T Consensus 17 ~~i~aG~~GsGKSt~~~~~~~~~~--~-~----------~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~ 83 (199)
T PF06414_consen 17 LIIIAGQPGSGKSTLARQLLEEFG--G-G----------GIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAE 83 (199)
T ss_dssp EEEEES-TTSTTHHHHHHHHHHT---T-T-----------SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHhhhhcc--C-C----------CeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 356679999999999988766543 1 1 12346666542 111111 11222234777
Q ss_pred chHHHHHHHHhcCCCCCceEEEEcCCC-ChHhhhhh
Q psy4734 251 GILAKTFREMAVSTTPDRKWIMFDGPI-DAVWIENM 285 (367)
Q Consensus 251 Gil~~~~r~~~~~~~~~~~wivfDG~~-d~~wie~l 285 (367)
.++..++++. .=|||||.. ++.++..+
T Consensus 84 ~~~~~a~~~~--------~nii~E~tl~~~~~~~~~ 111 (199)
T PF06414_consen 84 KLIEYAIENR--------YNIIFEGTLSNPSKLRKL 111 (199)
T ss_dssp HHHHHHHHCT----------EEEE--TTSSHHHHHH
T ss_pred HHHHHHHHcC--------CCEEEecCCCChhHHHHH
Confidence 7777777544 457889887 45666643
No 433
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=87.29 E-value=0.33 Score=47.23 Aligned_cols=155 Identities=10% Similarity=0.145 Sum_probs=82.1
Q ss_pred hhhHHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceecccccc
Q psy4734 172 QPHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSASHE 247 (367)
Q Consensus 172 q~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~~~~~ 247 (367)
...+.++......|++.|++|+||+++.+.+... .... .-.+..+|+.+++ -.++||.-. +.
T Consensus 19 ~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~----s~r~-------~~pfv~v~c~~~~~~~~~~~lfg~~~---~~ 84 (326)
T PRK11608 19 LEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL----SSRW-------QGPFISLNCAALNENLLDSELFGHEA---GA 84 (326)
T ss_pred HHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh----CCcc-------CCCeEEEeCCCCCHHHHHHHHccccc---cc
Confidence 3445666677788999999999999998776532 2111 1134567877775 345677421 11
Q ss_pred cc------cchHHHHHHHHhcCCCCCceEEEEcC--CCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCC-C
Q psy4734 248 WR------DGILAKTFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-L 318 (367)
Q Consensus 248 W~------dGil~~~~r~~~~~~~~~~~wivfDG--~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~-l 318 (367)
+. -|.+ .+ ...--+++|. .++..--+.|-.++++.....+... -..+.++|+|+-++. +
T Consensus 85 ~~g~~~~~~g~l----~~------a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~s~~~l 152 (326)
T PRK11608 85 FTGAQKRHPGRF----ER------ADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADL 152 (326)
T ss_pred cCCcccccCCch----hc------cCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCchhH
Confidence 11 1222 11 1123467772 3444444556666666554444332 345557888886533 2
Q ss_pred ------CccCcchhhcee--eEEecccC---CchHHHHHHHHHHh
Q psy4734 319 ------EFASPATVSRVG--MIYFELKC---ISWTTFFLSYQNEL 352 (367)
Q Consensus 319 ------~~asPatvsRcg--~v~~~~~~---~~~~~~~~swl~~~ 352 (367)
....+....|.+ .|.+.|-. =....++..++...
T Consensus 153 ~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~ 197 (326)
T PRK11608 153 PAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQM 197 (326)
T ss_pred HHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHH
Confidence 123344555653 34454420 12455666666554
No 434
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=87.25 E-value=1.1 Score=41.07 Aligned_cols=43 Identities=21% Similarity=0.148 Sum_probs=28.6
Q ss_pred ccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccc
Q psy4734 188 VGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYG 239 (367)
Q Consensus 188 ~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G 239 (367)
-+..|+||||+.-.|+.++...+ .+|.+...+|..-+...++|
T Consensus 7 ~~KGGvGKTt~a~~LA~~la~~g---------~~VlliD~D~~~~~~~~~~g 49 (251)
T TIGR01969 7 SGKGGTGKTTITANLGVALAKLG---------KKVLALDADITMANLELILG 49 (251)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCC---------CeEEEEeCCCCCccceeEeC
Confidence 36789999999999998887542 35666666764333333443
No 435
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=87.24 E-value=0.42 Score=38.50 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=19.0
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.+++.|++|+|||+++-.+...+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 467889999999998777665554
No 436
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=87.22 E-value=0.32 Score=44.65 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++++..+
T Consensus 14 ~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 14 ISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999987654
No 437
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=87.21 E-value=0.34 Score=42.84 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=18.5
Q ss_pred hheeccccCCCchhhHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~a 205 (367)
-++++||+|+||+|+.+.|.+.
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4678899999999998887654
No 438
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.18 E-value=0.32 Score=44.89 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.2
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||++++|+..+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36678999999999999987543
No 439
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.16 E-value=0.31 Score=44.96 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++|+..+
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 32 YTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6688999999999999988654
No 440
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.15 E-value=0.33 Score=42.31 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=19.7
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-+.++||+|+||||++++++..+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 336678999999999999987654
No 441
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=87.13 E-value=0.32 Score=45.19 Aligned_cols=23 Identities=48% Similarity=0.475 Sum_probs=19.4
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++|+||||++++|+..+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36678999999999999988654
No 442
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=87.08 E-value=0.32 Score=45.07 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||++++++..+
T Consensus 32 ~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 32 TALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 6688999999999999988643
No 443
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.08 E-value=0.35 Score=45.89 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=59.6
Q ss_pred heeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhcCC
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVST 264 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~~ 264 (367)
++|.||||-||||+.++++..++. .+....-.++. +.|=+..++...
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgv--------------n~k~tsGp~le---------------K~gDlaaiLt~L---- 101 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGV--------------NLKITSGPALE---------------KPGDLAAILTNL---- 101 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHhcC--------------CeEeccccccc---------------ChhhHHHHHhcC----
Confidence 678899999999999998876632 22211111111 011122222111
Q ss_pred CCCceEEEEc--CCCChHhhhhhhhccCCCCce-eeccc---c--eeecCCCCeEEEecCCCCccCcchhhceeeEE
Q psy4734 265 TPDRKWIMFD--GPIDAVWIENMNTVLDDNKKL-CLING---E--IIKMSNTMNLIFECENLEFASPATVSRVGMIY 333 (367)
Q Consensus 265 ~~~~~wivfD--G~~d~~wie~lnsvlddn~~l-~L~~g---e--~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~ 333 (367)
....-+..| =.+.+.--|-|=++|+|=+.- .+..| - ++.+| ++.+|=-|+-.--.|-..-.|.|++.
T Consensus 102 -e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp-pFTLIGATTr~G~lt~PLrdRFGi~~ 176 (332)
T COG2255 102 -EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP-PFTLIGATTRAGMLTNPLRDRFGIIQ 176 (332)
T ss_pred -CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC-CeeEeeeccccccccchhHHhcCCee
Confidence 223444445 123455556666667663322 22222 2 23333 56667666666666666777777763
No 444
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.06 E-value=0.3 Score=45.28 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.4
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.+.++|++||||||+.++|+..+.
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcCc
Confidence 477889999999999999886653
No 445
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=87.06 E-value=0.33 Score=44.32 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.5
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||++++|+..+
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 36688999999999999988654
No 446
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.06 E-value=0.32 Score=43.62 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||+.++++..+
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 30 VQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999987654
No 447
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.04 E-value=0.32 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++++..+
T Consensus 32 ~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 32 TALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 6678999999999999988654
No 448
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.03 E-value=0.33 Score=43.71 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++++..+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 31 LVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999987643
No 449
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=87.02 E-value=0.33 Score=43.29 Aligned_cols=23 Identities=43% Similarity=0.394 Sum_probs=19.1
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||++++++..+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36688999999999999987643
No 450
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.01 E-value=0.33 Score=43.71 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++++..+
T Consensus 27 ~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 27 TAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999987544
No 451
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=86.99 E-value=0.33 Score=45.55 Aligned_cols=23 Identities=39% Similarity=0.278 Sum_probs=19.4
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||++++|+..+
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36688999999999999988644
No 452
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=86.95 E-value=0.32 Score=41.32 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=18.7
Q ss_pred hhheeccccCCCchhhHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~a 205 (367)
.-+.++|++|+||||++++++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 33667899999999999987654
No 453
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=86.95 E-value=0.34 Score=42.12 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.2
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++|+||||+.++++..+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36678999999999999987644
No 454
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=86.94 E-value=0.32 Score=47.84 Aligned_cols=23 Identities=30% Similarity=0.223 Sum_probs=19.3
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+-++||+||||||++++++...
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 36678999999999999988644
No 455
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=86.93 E-value=0.33 Score=43.96 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=19.7
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-+.++|++|+||||+.++++..+
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 346688999999999999987544
No 456
>KOG0731|consensus
Probab=86.90 E-value=0.32 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=19.9
Q ss_pred hhhhheeccccCCCchhhHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..+|++++||||+|||.+.++.|
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiA 365 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIA 365 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHh
Confidence 56899999999999999877654
No 457
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=86.90 E-value=0.34 Score=42.59 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=18.5
Q ss_pred hheeccccCCCchhhHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~a 205 (367)
-+.++|++|+||||++++++..
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3667899999999999987754
No 458
>PLN02459 probable adenylate kinase
Probab=86.89 E-value=0.35 Score=45.51 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|||||||||..+.|++.+
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6678999999999999888765
No 459
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=86.89 E-value=0.34 Score=43.91 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++++...
T Consensus 33 ~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 33 VAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEECCCCCCHHHHHHHHhcCc
Confidence 6678999999999999987543
No 460
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=86.89 E-value=0.34 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++|+..+
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 32 VAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6688999999999999987644
No 461
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=86.87 E-value=0.33 Score=45.23 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=19.3
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+-++|++||||||++++|+..+
T Consensus 33 ~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 33 TAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 6678999999999999988754
No 462
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=86.85 E-value=1 Score=39.49 Aligned_cols=43 Identities=28% Similarity=0.314 Sum_probs=31.5
Q ss_pred ccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccc
Q psy4734 188 VGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYG 239 (367)
Q Consensus 188 ~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G 239 (367)
-+..|+||||+...|+.++... +.+|-....+|.+-...-+++
T Consensus 5 ~~kGG~GKTt~a~~la~~la~~---------g~~VlliD~D~~~~~~~~~~~ 47 (195)
T PF01656_consen 5 SGKGGVGKTTIAANLAQALARK---------GKKVLLIDLDPQAPNLSILFG 47 (195)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHT---------TS-EEEEEESTTSHHHHHHTT
T ss_pred cCCCCccHHHHHHHHHhccccc---------cccccccccCcccccHHHHhc
Confidence 3668999999999999998763 346888888888765444443
No 463
>PRK09087 hypothetical protein; Validated
Probab=86.81 E-value=0.38 Score=44.30 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.8
Q ss_pred hheeccccCCCchhhHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~ 204 (367)
.+.+.||+|+|||++.+.+++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999886554
No 464
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=86.81 E-value=0.33 Score=47.74 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=19.2
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+-++||+||||||++++++...
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCC
Confidence 36678999999999999987544
No 465
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=86.80 E-value=0.41 Score=42.41 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|+.||||||+++.|++.+
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999999988764
No 466
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=86.78 E-value=0.88 Score=38.92 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.2
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|++|+||||+...++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~ 25 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRA 25 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 457799999999999999877743
No 467
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=86.77 E-value=0.85 Score=48.98 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=39.9
Q ss_pred hHHHHHHHHhcCCcccchhhHHHHHh----------hhhhheeccccCCCchhhHHHHHHHHHHHH
Q psy4734 155 NDELLEILSETKDPLRVQPHLKKIFE----------VRHGLMVVGESFGGKTTAYQTLADSLTDIA 210 (367)
Q Consensus 155 ~~~Ll~ils~~~~~~~lq~~l~k~~~----------~~~~v~~~g~~gsGKTt~~~~L~~al~~~~ 210 (367)
+++.............+-||++.+-+ ...++++.|++|+|||+..+.+...+..++
T Consensus 57 ~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s 122 (692)
T cd01385 57 NPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALS 122 (692)
T ss_pred CHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhc
Confidence 45666666555445667788776532 235688889999999999999888776654
No 468
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=86.74 E-value=0.42 Score=42.89 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=35.4
Q ss_pred CCceEEEEcCC---CChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccC
Q psy4734 266 PDRKWIMFDGP---IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKC 338 (367)
Q Consensus 266 ~~~~wivfDG~---~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~ 338 (367)
.+++.+++|=| +|+...+.+-.++.+-+ .+..+|+=++++..+ ....|+..+|...+.
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~-------------~~~tiIiitH~~~~~--~~~d~v~~~~~~~~~ 194 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFS-------------KETQFIVITHRKGTM--EAADRLYGVTMQESG 194 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-------------cCCEEEEEECCHHHH--hhcceEEEEEeccCC
Confidence 34589999966 57777777766654321 123456656665544 246677777776544
No 469
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=86.72 E-value=0.35 Score=44.57 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++++..+
T Consensus 32 ~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 32 VGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6678999999999999988654
No 470
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=86.71 E-value=0.34 Score=47.79 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++...
T Consensus 33 ~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 33 IVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EEEECCCCCcHHHHHHHHHCCC
Confidence 5678999999999999987644
No 471
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=86.71 E-value=0.49 Score=41.29 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=21.9
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
.-+.+.|+||+||||+..-+++.|...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 346778999999999998888777544
No 472
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=86.71 E-value=0.77 Score=44.04 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=22.6
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
....+.++|++|+||||+...+...+..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3455778899999999999998887653
No 473
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=86.70 E-value=0.69 Score=49.93 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.2
Q ss_pred hheeccccCCCchhhHHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
-.++.|+||+||||+++.+.+++...
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~ 365 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEEL 365 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35566999999999999988877654
No 474
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=86.67 E-value=0.36 Score=40.78 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=16.4
Q ss_pred heeccccCCCchhhHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~ 203 (367)
++++|++|+||||+++.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~ 21 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFT 21 (164)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5788999999999988764
No 475
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.64 E-value=0.35 Score=44.23 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=33.0
Q ss_pred CCceEEEEcCC---CChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeE
Q psy4734 266 PDRKWIMFDGP---IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMI 332 (367)
Q Consensus 266 ~~~~wivfDG~---~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v 332 (367)
..++.+++|=| +|+.-.+.+..++.. +.....+|+-++++..+ +. ..|+.++
T Consensus 155 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~-------------~~~~~tii~~sh~~~~~-~~-~d~v~~l 209 (234)
T cd03251 155 KDPPILILDEATSALDTESERLVQAALER-------------LMKNRTTFVIAHRLSTI-EN-ADRIVVL 209 (234)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHH-------------hcCCCEEEEEecCHHHH-hh-CCEEEEe
Confidence 46789999966 477777766665521 11234678888887766 33 5666444
No 476
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=86.63 E-value=0.35 Score=43.78 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++++..+
T Consensus 30 ~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 30 TMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 6678999999999999988654
No 477
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.61 E-value=0.37 Score=42.61 Aligned_cols=87 Identities=20% Similarity=0.308 Sum_probs=49.5
Q ss_pred hhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHH
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~ 259 (367)
+...++++.|++|+|||.+...++..+-.. +.+|.+. +..+|+..+.. .+.+|-....++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~---------g~~v~f~-------~~~~L~~~l~~---~~~~~~~~~~~~~ 105 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK---------GYSVLFI-------TASDLLDELKQ---SRSDGSYEELLKR 105 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT---------T--EEEE-------EHHHHHHHHHC---CHCCTTHCHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC---------CcceeEe-------ecCceeccccc---cccccchhhhcCc
Confidence 456789999999999999988877654331 2234332 44566655532 2455655566666
Q ss_pred HhcCCCCCceEEEEc--C--CCChHhhhhhhhccC
Q psy4734 260 MAVSTTPDRKWIMFD--G--PIDAVWIENMNTVLD 290 (367)
Q Consensus 260 ~~~~~~~~~~wivfD--G--~~d~~wie~lnsvld 290 (367)
... ..-+|+| | +.+....+-|-.++|
T Consensus 106 l~~-----~dlLilDDlG~~~~~~~~~~~l~~ii~ 135 (178)
T PF01695_consen 106 LKR-----VDLLILDDLGYEPLSEWEAELLFEIID 135 (178)
T ss_dssp HHT-----SSCEEEETCTSS---HHHHHCTHHHHH
T ss_pred ccc-----ccEecccccceeeecccccccchhhhh
Confidence 633 3778888 2 234444455545543
No 478
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.60 E-value=0.32 Score=43.73 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.6
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+-++|++|+||||++++|+..+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 46678999999999999988654
No 479
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.59 E-value=0.35 Score=44.88 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++++..+
T Consensus 33 ~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 33 FALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 5678999999999999988654
No 480
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=86.57 E-value=0.35 Score=44.33 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=19.3
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++||||||++++|+..+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36678999999999999987654
No 481
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=86.56 E-value=0.35 Score=45.17 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++|+..+
T Consensus 42 ~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 42 TAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 6678999999999999998654
No 482
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=86.55 E-value=0.36 Score=45.72 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=25.0
Q ss_pred HHHHHhhh--hhheeccccCCCchhhHHHHHHHHH
Q psy4734 175 LKKIFEVR--HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 175 l~k~~~~~--~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+..+.... ..+.+.||+|+||||+.+.++..+.
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 44454433 4678899999999999999887664
No 483
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.51 E-value=0.38 Score=44.88 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++|+..+
T Consensus 41 ~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 41 TAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6678999999999999998655
No 484
>PLN02748 tRNA dimethylallyltransferase
Probab=86.51 E-value=0.6 Score=47.63 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=41.7
Q ss_pred heeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEE--EeCCCCCc-------cccccceecccccccccchHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYK--IINPKSIT-------MGQLYGEFDSASHEWRDGILAK 255 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~--~inpka~t-------~~~l~G~~d~~~~~W~dGil~~ 255 (367)
+.++||+|+|||++...|+..++- . ..+.+..+| |. .|-....| ..+|+|.++|. .+|+=|-|.+
T Consensus 25 i~i~GptgsGKs~la~~la~~~~~--e--ii~~DsmQV-YrgLdIgTaKpt~eE~~~VpHHLid~v~p~-e~ysv~~F~~ 98 (468)
T PLN02748 25 VVVMGPTGSGKSKLAVDLASHFPV--E--IINADSMQV-YSGLDVLTNKVPLHEQKGVPHHLLGVISPS-VEFTAKDFRD 98 (468)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCe--e--EEcCchhee-eCCcchhcCCCCHHHHcCCCCeeEeecCCC-CcCcHHHHHH
Confidence 667899999999999888877631 0 000111111 11 11111122 45788888885 6788777776
Q ss_pred HHHHHh
Q psy4734 256 TFREMA 261 (367)
Q Consensus 256 ~~r~~~ 261 (367)
..+++.
T Consensus 99 ~A~~~I 104 (468)
T PLN02748 99 HAVPLI 104 (468)
T ss_pred HHHHHH
Confidence 555554
No 485
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=86.49 E-value=0.36 Score=43.87 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++++..+
T Consensus 37 ~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 37 VALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6678999999999999987644
No 486
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=86.42 E-value=0.4 Score=40.70 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=16.4
Q ss_pred heeccccCCCchhhHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~ 203 (367)
++++|++|+|||++++.+.
T Consensus 3 i~v~G~~~~GKTsli~~~~ 21 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFV 21 (164)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999988764
No 487
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=86.40 E-value=0.36 Score=44.21 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=19.6
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.||+|+||||++++++..+.
T Consensus 15 ~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 15 LALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 56789999999999999886553
No 488
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=86.39 E-value=0.36 Score=44.26 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++|+..+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 31 VGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEECCCCCCHHHHHHHHhcCc
Confidence 6788999999999999988654
No 489
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.36 E-value=0.37 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=19.6
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++|+||||++++++..+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 36678999999999999988654
No 490
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=86.35 E-value=0.36 Score=46.95 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=27.0
Q ss_pred HhhhhhheeccccCCCchhhHHHHHHHHHHHHh
Q psy4734 179 FEVRHGLMVVGESFGGKTTAYQTLADSLTDIAA 211 (367)
Q Consensus 179 ~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~ 211 (367)
+......+++||.|+||||++.+...+|+....
T Consensus 21 f~e~~ttIivgpNGsGKTtvLdair~aL~~fid 53 (440)
T COG3950 21 FGESETTIIVGPNGSGKTTVLDAIRNALNKFID 53 (440)
T ss_pred cCCCceEEEECCCCCChhhHHHHHHHHHHhhcc
Confidence 334446788999999999999999999987654
No 491
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.33 E-value=0.37 Score=45.37 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=19.8
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-+.++||+|+||||++++|+..+
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 336688999999999999987654
No 492
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.32 E-value=0.37 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=19.3
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||++++++..+
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 35678999999999999987654
No 493
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=86.28 E-value=0.37 Score=44.74 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.3
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++|+||||++++|+..+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36678999999999999987644
No 494
>PLN02165 adenylate isopentenyltransferase
Probab=86.26 E-value=0.33 Score=47.26 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.9
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++||+|||||++...|+..++
T Consensus 46 ivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 46 VVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 66789999999999999888764
No 495
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=86.25 E-value=0.36 Score=47.91 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.||+||||||++++++..+
T Consensus 43 ~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 43 LTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5678999999999999988644
No 496
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.25 E-value=0.37 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||++++++..+
T Consensus 40 ~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 40 TCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6678999999999999988654
No 497
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.24 E-value=0.38 Score=44.59 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++++..+
T Consensus 32 ~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 32 TAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 6688999999999999988644
No 498
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.23 E-value=0.37 Score=45.37 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++|+..+
T Consensus 38 ~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 38 VAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6678999999999999988654
No 499
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=86.22 E-value=0.48 Score=41.74 Aligned_cols=24 Identities=29% Similarity=0.309 Sum_probs=20.1
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-+.+.|++|+||||+.+.|...+.
T Consensus 20 ~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 20 VIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 356779999999999999887764
No 500
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=86.22 E-value=0.38 Score=44.52 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++|+||||++++|+..+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 30 TALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 6688999999999999988654
Done!