Query psy4734
Match_columns 367
No_of_seqs 252 out of 1491
Neff 7.7
Searched_HMMs 29240
Date Sat Aug 17 00:37:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 1.2E-80 4.2E-85 719.9 23.0 172 175-354 899-1073(3245)
2 4akg_A Glutathione S-transfera 100.0 2.9E-76 9.8E-81 681.7 29.6 174 175-356 916-1093(2695)
3 3vkg_A Dynein heavy chain, cyt 98.8 8.2E-10 2.8E-14 130.2 3.0 121 67-187 221-371 (3245)
4 4akg_A Glutathione S-transfera 98.8 2.8E-09 9.5E-14 124.9 7.0 121 66-186 279-429 (2695)
5 1g8p_A Magnesium-chelatase 38 97.7 4.5E-05 1.5E-09 72.4 7.4 145 182-337 45-218 (350)
6 4fcw_A Chaperone protein CLPB; 97.5 6E-05 2.1E-09 70.3 4.8 150 183-352 48-232 (311)
7 3pfi_A Holliday junction ATP-d 97.5 0.0002 6.8E-09 67.8 8.4 134 183-351 56-199 (338)
8 3syl_A Protein CBBX; photosynt 97.5 0.00014 4.7E-09 67.9 6.2 141 183-359 68-227 (309)
9 2chg_A Replication factor C sm 97.4 0.0013 4.4E-08 57.1 11.4 118 184-338 40-162 (226)
10 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00052 1.8E-08 72.5 10.2 147 184-352 490-669 (758)
11 3t15_A Ribulose bisphosphate c 97.4 0.00018 6E-09 67.4 5.8 132 182-337 36-186 (293)
12 1hqc_A RUVB; extended AAA-ATPa 97.4 0.0013 4.4E-08 61.5 11.8 122 183-338 39-169 (324)
13 2r44_A Uncharacterized protein 97.3 0.00036 1.2E-08 66.0 7.4 130 180-338 44-186 (331)
14 1a5t_A Delta prime, HOLB; zinc 97.3 0.001 3.5E-08 63.3 10.1 145 182-352 24-179 (334)
15 1ofh_A ATP-dependent HSL prote 97.3 0.00014 4.7E-09 67.6 3.9 132 182-338 50-203 (310)
16 1jbk_A CLPB protein; beta barr 97.2 0.00028 9.6E-09 59.9 4.8 27 182-208 43-69 (195)
17 1njg_A DNA polymerase III subu 97.1 0.0024 8.1E-08 56.0 10.3 150 183-350 46-199 (250)
18 3uk6_A RUVB-like 2; hexameric 97.1 0.0012 4.1E-08 63.0 8.7 25 183-207 71-95 (368)
19 2chq_A Replication factor C sm 97.1 0.0021 7.3E-08 59.6 9.9 118 184-338 40-162 (319)
20 3m6a_A ATP-dependent protease 97.0 0.0025 8.5E-08 64.8 10.4 135 184-338 110-254 (543)
21 1iqp_A RFCS; clamp loader, ext 97.0 0.0034 1.2E-07 58.4 10.5 127 184-350 48-179 (327)
22 1sxj_D Activator 1 41 kDa subu 97.0 0.0021 7.1E-08 60.7 9.1 123 184-338 60-193 (353)
23 3nbx_X ATPase RAVA; AAA+ ATPas 97.0 0.001 3.4E-08 67.1 6.9 140 178-337 37-182 (500)
24 1sxj_B Activator 1 37 kDa subu 97.0 0.0039 1.3E-07 57.9 10.6 126 185-351 45-177 (323)
25 3f9v_A Minichromosome maintena 97.0 0.00046 1.6E-08 71.1 4.4 126 184-334 329-473 (595)
26 1sxj_E Activator 1 40 kDa subu 96.9 0.0026 8.8E-08 60.3 9.2 70 266-351 133-204 (354)
27 3pxi_A Negative regulator of g 96.9 0.0011 3.7E-08 70.1 6.7 140 184-352 523-678 (758)
28 2qby_B CDC6 homolog 3, cell di 96.9 0.0014 4.7E-08 62.7 6.7 144 183-350 46-211 (384)
29 3pxg_A Negative regulator of g 96.9 0.0021 7.2E-08 64.1 8.3 121 182-338 201-326 (468)
30 2bjv_A PSP operon transcriptio 96.9 0.00059 2E-08 62.3 3.9 151 179-352 26-197 (265)
31 1qvr_A CLPB protein; coiled co 96.8 0.0024 8.2E-08 68.4 8.8 148 183-351 589-772 (854)
32 3pvs_A Replication-associated 96.8 0.0024 8.4E-08 63.3 8.2 123 183-350 51-179 (447)
33 1jr3_A DNA polymerase III subu 96.8 0.007 2.4E-07 57.5 11.1 147 183-350 39-188 (373)
34 3h4m_A Proteasome-activating n 96.8 0.00092 3.2E-08 61.5 4.7 134 181-349 50-201 (285)
35 3vfd_A Spastin; ATPase, microt 96.8 0.00075 2.6E-08 65.5 4.0 139 182-349 148-295 (389)
36 2qp9_X Vacuolar protein sortin 96.8 0.00067 2.3E-08 65.2 3.5 135 181-352 83-233 (355)
37 2p65_A Hypothetical protein PF 96.8 0.0008 2.7E-08 57.0 3.5 26 182-207 43-68 (187)
38 3pxi_A Negative regulator of g 96.8 0.0027 9.1E-08 67.1 8.3 121 182-338 201-326 (758)
39 2zan_A Vacuolar protein sortin 96.7 0.0046 1.6E-07 61.2 9.2 140 181-353 166-318 (444)
40 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0012 4.2E-08 59.6 4.6 138 181-353 38-194 (262)
41 3k1j_A LON protease, ATP-depen 96.7 0.0023 8E-08 65.8 6.9 69 268-336 202-286 (604)
42 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.0036 1.2E-07 59.2 7.6 139 182-353 45-196 (322)
43 3b9p_A CG5977-PA, isoform A; A 96.6 0.0038 1.3E-07 57.7 7.6 26 181-206 53-78 (297)
44 3u61_B DNA polymerase accessor 96.5 0.0017 5.9E-08 60.9 4.5 112 183-338 49-166 (324)
45 1ojl_A Transcriptional regulat 96.5 0.0067 2.3E-07 56.9 8.2 153 177-352 20-193 (304)
46 2v1u_A Cell division control p 96.4 0.0095 3.2E-07 56.6 9.0 153 182-350 44-215 (387)
47 1sxj_C Activator 1 40 kDa subu 96.4 0.0081 2.8E-07 56.9 8.4 116 185-338 49-170 (340)
48 2gno_A DNA polymerase III, gam 96.4 0.0068 2.3E-07 57.0 7.6 130 183-352 19-151 (305)
49 1um8_A ATP-dependent CLP prote 96.3 0.0016 5.6E-08 62.6 2.9 25 182-206 72-96 (376)
50 3eie_A Vacuolar protein sortin 96.2 0.0021 7.2E-08 60.6 3.2 133 182-351 51-199 (322)
51 3d8b_A Fidgetin-like protein 1 96.2 0.0055 1.9E-07 58.7 6.0 137 181-350 116-265 (357)
52 2r62_A Cell division protease 96.1 0.013 4.4E-07 53.2 7.8 25 182-206 44-68 (268)
53 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0043 1.5E-07 56.7 3.9 25 184-208 6-30 (260)
54 3hws_A ATP-dependent CLP prote 95.8 0.00083 2.9E-08 64.4 -2.0 25 182-206 51-75 (363)
55 3jvv_A Twitching mobility prot 95.7 0.055 1.9E-06 51.9 10.3 101 174-286 114-215 (356)
56 4b4t_L 26S protease subunit RP 95.5 0.0041 1.4E-07 61.5 1.9 26 181-206 214-239 (437)
57 1qvr_A CLPB protein; coiled co 95.2 0.05 1.7E-06 58.2 9.1 126 183-338 192-333 (854)
58 1r6b_X CLPA protein; AAA+, N-t 94.9 0.053 1.8E-06 57.0 8.4 26 182-207 207-232 (758)
59 1sxj_A Activator 1 95 kDa subu 94.9 0.025 8.4E-07 57.0 5.3 24 183-206 78-101 (516)
60 3kb2_A SPBC2 prophage-derived 94.8 0.011 3.9E-07 49.4 2.3 22 185-206 4-25 (173)
61 1fnn_A CDC6P, cell division co 94.7 0.056 1.9E-06 51.3 7.0 144 184-349 46-206 (389)
62 1qhx_A CPT, protein (chloramph 94.6 0.01 3.5E-07 50.2 1.5 22 185-206 6-27 (178)
63 1kag_A SKI, shikimate kinase I 94.6 0.011 3.8E-07 49.7 1.7 23 184-206 6-28 (173)
64 1kht_A Adenylate kinase; phosp 94.6 0.014 4.9E-07 49.6 2.4 23 185-207 6-28 (192)
65 3uie_A Adenylyl-sulfate kinase 94.3 0.017 6E-07 50.2 2.4 23 185-207 28-50 (200)
66 4b4t_J 26S protease regulatory 94.3 0.016 5.6E-07 56.5 2.4 26 181-206 181-206 (405)
67 1nks_A Adenylate kinase; therm 94.3 0.016 5.6E-07 49.3 2.2 24 185-208 4-27 (194)
68 3trf_A Shikimate kinase, SK; a 94.3 0.017 5.7E-07 49.3 2.2 24 183-206 6-29 (185)
69 1kgd_A CASK, peripheral plasma 94.3 0.015 5.1E-07 49.8 1.9 22 185-206 8-29 (180)
70 2c95_A Adenylate kinase 1; tra 94.3 0.02 6.8E-07 49.0 2.7 24 183-206 10-33 (196)
71 3vaa_A Shikimate kinase, SK; s 94.2 0.018 6E-07 50.1 2.2 25 182-206 25-49 (199)
72 3ec2_A DNA replication protein 94.2 0.018 6E-07 49.1 2.2 26 182-207 38-63 (180)
73 3hu3_A Transitional endoplasmi 94.2 0.019 6.6E-07 57.5 2.7 120 181-338 237-373 (489)
74 4b4t_K 26S protease regulatory 94.2 0.014 4.8E-07 57.5 1.7 26 181-206 205-230 (428)
75 1via_A Shikimate kinase; struc 94.1 0.018 6.2E-07 48.8 1.9 24 184-207 6-29 (175)
76 2rhm_A Putative kinase; P-loop 94.1 0.019 6.6E-07 49.0 2.1 22 185-206 8-29 (193)
77 4b4t_H 26S protease regulatory 94.1 0.02 7E-07 56.8 2.5 27 180-206 241-267 (467)
78 1ye8_A Protein THEP1, hypothet 94.1 0.021 7E-07 49.2 2.2 23 185-207 3-25 (178)
79 3c8u_A Fructokinase; YP_612366 94.0 0.023 7.9E-07 49.7 2.6 24 184-207 24-47 (208)
80 3n70_A Transport activator; si 94.0 0.018 6.3E-07 47.4 1.8 30 175-204 17-46 (145)
81 3t61_A Gluconokinase; PSI-biol 94.0 0.02 7E-07 49.6 2.2 23 184-206 20-42 (202)
82 4b4t_M 26S protease regulatory 94.0 0.019 6.7E-07 56.6 2.2 26 181-206 214-239 (434)
83 1lvg_A Guanylate kinase, GMP k 94.0 0.021 7.3E-07 49.7 2.2 23 184-206 6-28 (198)
84 3tr0_A Guanylate kinase, GMP k 93.9 0.02 6.7E-07 49.5 1.9 22 185-206 10-31 (205)
85 3cm0_A Adenylate kinase; ATP-b 93.9 0.02 6.8E-07 48.8 1.9 22 185-206 7-28 (186)
86 2ewv_A Twitching motility prot 93.9 0.14 4.9E-06 49.2 8.2 24 185-208 139-162 (372)
87 4eun_A Thermoresistant glucoki 93.9 0.023 7.8E-07 49.4 2.2 22 185-206 32-53 (200)
88 2x8a_A Nuclear valosin-contain 93.9 0.014 4.7E-07 53.9 0.8 26 180-205 42-67 (274)
89 1ly1_A Polynucleotide kinase; 93.9 0.021 7.1E-07 48.1 1.9 20 185-204 5-24 (181)
90 1zp6_A Hypothetical protein AT 93.8 0.019 6.5E-07 49.1 1.5 21 185-205 12-32 (191)
91 1knq_A Gluconate kinase; ALFA/ 93.8 0.025 8.7E-07 47.7 2.2 22 185-206 11-32 (175)
92 1lv7_A FTSH; alpha/beta domain 93.7 0.023 7.9E-07 51.3 2.1 26 181-206 44-69 (257)
93 1e6c_A Shikimate kinase; phosp 93.7 0.023 7.8E-07 47.7 1.9 24 184-207 4-27 (173)
94 2ce7_A Cell division protein F 93.7 0.033 1.1E-06 55.6 3.3 26 181-206 48-73 (476)
95 3a00_A Guanylate kinase, GMP k 93.7 0.024 8.1E-07 48.7 1.9 22 185-206 4-25 (186)
96 1ixz_A ATP-dependent metallopr 93.6 0.016 5.5E-07 52.2 0.8 26 181-206 48-73 (254)
97 2iyv_A Shikimate kinase, SK; t 93.6 0.024 8.4E-07 48.2 1.9 23 185-207 5-27 (184)
98 3lw7_A Adenylate kinase relate 93.6 0.019 6.5E-07 47.8 1.2 25 266-290 76-100 (179)
99 3iij_A Coilin-interacting nucl 93.6 0.028 9.5E-07 47.7 2.2 23 184-206 13-35 (180)
100 3bos_A Putative DNA replicatio 93.5 0.043 1.5E-06 48.1 3.4 26 182-207 52-77 (242)
101 1cke_A CK, MSSA, protein (cyti 93.5 0.029 9.9E-07 49.3 2.2 23 184-206 7-29 (227)
102 2jaq_A Deoxyguanosine kinase; 93.5 0.029 1E-06 48.2 2.2 23 185-207 3-25 (205)
103 2bbw_A Adenylate kinase 4, AK4 93.5 0.029 1E-06 50.4 2.2 25 183-207 28-52 (246)
104 2w58_A DNAI, primosome compone 93.5 0.041 1.4E-06 47.5 3.1 25 183-207 55-79 (202)
105 2plr_A DTMP kinase, probable t 93.5 0.03 1E-06 48.4 2.2 23 185-207 7-29 (213)
106 2qor_A Guanylate kinase; phosp 93.4 0.023 7.9E-07 49.5 1.4 24 183-206 13-36 (204)
107 1zuh_A Shikimate kinase; alpha 93.4 0.028 9.6E-07 47.1 1.9 25 183-207 8-32 (168)
108 3te6_A Regulatory protein SIR3 93.4 0.052 1.8E-06 51.3 3.9 57 173-233 34-92 (318)
109 1tev_A UMP-CMP kinase; ploop, 93.4 0.032 1.1E-06 47.5 2.2 23 185-207 6-28 (196)
110 3fb4_A Adenylate kinase; psych 93.4 0.032 1.1E-06 48.8 2.2 22 185-206 3-24 (216)
111 2j41_A Guanylate kinase; GMP, 93.4 0.028 9.6E-07 48.5 1.9 22 185-206 9-30 (207)
112 2bdt_A BH3686; alpha-beta prot 93.3 0.029 1E-06 48.0 1.9 20 185-204 5-24 (189)
113 2bwj_A Adenylate kinase 5; pho 93.2 0.028 9.7E-07 48.2 1.7 24 184-207 14-37 (199)
114 2wwf_A Thymidilate kinase, put 93.2 0.034 1.2E-06 48.2 2.2 24 185-208 13-36 (212)
115 3tau_A Guanylate kinase, GMP k 93.2 0.03 1E-06 49.1 1.9 22 185-206 11-32 (208)
116 2pt5_A Shikimate kinase, SK; a 93.2 0.035 1.2E-06 46.3 2.2 23 185-207 3-25 (168)
117 2vli_A Antibiotic resistance p 93.2 0.022 7.7E-07 48.2 0.9 22 185-206 8-29 (183)
118 1zak_A Adenylate kinase; ATP:A 93.2 0.033 1.1E-06 49.1 2.1 24 184-207 7-30 (222)
119 3asz_A Uridine kinase; cytidin 93.1 0.034 1.2E-06 48.4 2.1 23 185-207 9-31 (211)
120 3cf0_A Transitional endoplasmi 93.1 0.029 1E-06 52.2 1.6 129 181-338 48-187 (301)
121 1nn5_A Similar to deoxythymidy 93.1 0.037 1.3E-06 48.1 2.2 24 185-208 12-35 (215)
122 2cdn_A Adenylate kinase; phosp 93.0 0.039 1.3E-06 47.8 2.2 22 185-206 23-44 (201)
123 4b4t_I 26S protease regulatory 93.0 0.03 1E-06 55.0 1.7 26 181-206 215-240 (437)
124 1aky_A Adenylate kinase; ATP:A 93.0 0.038 1.3E-06 48.6 2.2 22 185-206 7-28 (220)
125 1qf9_A UMP/CMP kinase, protein 93.0 0.037 1.3E-06 47.0 2.1 22 185-206 9-30 (194)
126 2z0h_A DTMP kinase, thymidylat 93.0 0.04 1.4E-06 47.2 2.2 24 185-208 3-26 (197)
127 3co5_A Putative two-component 93.0 0.0078 2.7E-07 49.7 -2.3 29 175-203 20-48 (143)
128 2yvu_A Probable adenylyl-sulfa 92.9 0.043 1.5E-06 46.8 2.4 24 185-208 16-39 (186)
129 1znw_A Guanylate kinase, GMP k 92.9 0.036 1.2E-06 48.5 1.9 22 185-206 23-44 (207)
130 1iy2_A ATP-dependent metallopr 92.9 0.024 8.4E-07 51.9 0.8 26 181-206 72-97 (278)
131 1z6g_A Guanylate kinase; struc 92.9 0.036 1.2E-06 49.1 1.9 22 185-206 26-47 (218)
132 2pbr_A DTMP kinase, thymidylat 92.8 0.044 1.5E-06 46.6 2.2 23 185-207 3-25 (195)
133 1in4_A RUVB, holliday junction 92.8 0.041 1.4E-06 52.0 2.2 32 307-338 149-181 (334)
134 4e22_A Cytidylate kinase; P-lo 92.8 0.032 1.1E-06 50.6 1.4 23 184-206 29-51 (252)
135 3dl0_A Adenylate kinase; phosp 92.7 0.035 1.2E-06 48.6 1.5 22 185-206 3-24 (216)
136 2ze6_A Isopentenyl transferase 92.7 0.044 1.5E-06 49.7 2.2 22 185-206 4-25 (253)
137 1gtv_A TMK, thymidylate kinase 92.7 0.028 9.7E-07 48.8 0.8 23 185-207 3-25 (214)
138 2kjq_A DNAA-related protein; s 92.6 0.05 1.7E-06 45.3 2.2 26 182-207 36-61 (149)
139 1zd8_A GTP:AMP phosphotransfer 92.6 0.035 1.2E-06 49.1 1.4 23 184-206 9-31 (227)
140 1s96_A Guanylate kinase, GMP k 92.5 0.043 1.5E-06 48.9 1.9 23 184-206 18-40 (219)
141 3sop_A Neuronal-specific septi 92.5 0.045 1.6E-06 50.3 2.1 23 184-206 4-26 (270)
142 1y63_A LMAJ004144AAA protein; 92.5 0.047 1.6E-06 46.7 2.1 21 185-205 13-33 (184)
143 3sr0_A Adenylate kinase; phosp 92.5 0.05 1.7E-06 48.0 2.2 22 185-206 3-24 (206)
144 1e4v_A Adenylate kinase; trans 92.5 0.047 1.6E-06 47.8 2.1 22 185-206 3-24 (214)
145 2eyu_A Twitching motility prot 92.4 0.052 1.8E-06 49.7 2.4 24 185-208 28-51 (261)
146 2pez_A Bifunctional 3'-phospho 92.4 0.052 1.8E-06 46.0 2.2 23 185-207 8-30 (179)
147 1d2n_A N-ethylmaleimide-sensit 92.4 0.047 1.6E-06 49.7 2.0 26 181-206 63-88 (272)
148 1gvn_B Zeta; postsegregational 92.4 0.045 1.5E-06 50.8 1.9 22 185-206 36-57 (287)
149 2xb4_A Adenylate kinase; ATP-b 92.4 0.052 1.8E-06 48.1 2.2 22 185-206 3-24 (223)
150 1ex7_A Guanylate kinase; subst 92.4 0.047 1.6E-06 47.5 1.9 22 184-205 3-24 (186)
151 3lnc_A Guanylate kinase, GMP k 92.3 0.043 1.5E-06 48.7 1.5 22 185-206 30-52 (231)
152 1tue_A Replication protein E1; 92.2 0.047 1.6E-06 48.4 1.7 24 183-206 59-82 (212)
153 3be4_A Adenylate kinase; malar 92.2 0.053 1.8E-06 47.7 2.1 22 185-206 8-29 (217)
154 1htw_A HI0065; nucleotide-bind 92.2 0.049 1.7E-06 45.9 1.7 22 185-206 36-57 (158)
155 1ak2_A Adenylate kinase isoenz 92.1 0.052 1.8E-06 48.3 1.9 24 184-207 18-41 (233)
156 1m7g_A Adenylylsulfate kinase; 92.1 0.064 2.2E-06 46.9 2.4 23 185-207 28-50 (211)
157 2v54_A DTMP kinase, thymidylat 92.0 0.04 1.4E-06 47.5 1.0 22 185-206 7-28 (204)
158 2p5t_B PEZT; postsegregational 92.0 0.047 1.6E-06 49.4 1.5 23 184-206 34-56 (253)
159 1ukz_A Uridylate kinase; trans 92.0 0.049 1.7E-06 47.0 1.5 23 184-206 17-39 (203)
160 2i3b_A HCR-ntpase, human cance 91.9 0.071 2.4E-06 46.3 2.4 23 185-207 4-26 (189)
161 3umf_A Adenylate kinase; rossm 91.9 0.065 2.2E-06 47.8 2.2 22 185-206 32-53 (217)
162 4gp7_A Metallophosphoesterase; 91.9 0.049 1.7E-06 46.2 1.3 17 185-201 12-28 (171)
163 3ney_A 55 kDa erythrocyte memb 91.8 0.06 2E-06 47.3 1.9 23 184-206 21-43 (197)
164 1jjv_A Dephospho-COA kinase; P 91.8 0.056 1.9E-06 46.8 1.7 20 185-204 5-24 (206)
165 1l8q_A Chromosomal replication 91.8 0.066 2.2E-06 50.0 2.3 25 183-207 38-62 (324)
166 3tlx_A Adenylate kinase 2; str 91.7 0.068 2.3E-06 48.1 2.2 22 185-206 32-53 (243)
167 3e1s_A Exodeoxyribonuclease V, 91.7 0.24 8.1E-06 50.6 6.5 27 182-208 204-230 (574)
168 2jeo_A Uridine-cytidine kinase 91.7 0.07 2.4E-06 47.9 2.2 23 185-207 28-50 (245)
169 3nwj_A ATSK2; P loop, shikimat 91.7 0.062 2.1E-06 48.9 1.9 25 183-207 49-73 (250)
170 2if2_A Dephospho-COA kinase; a 91.5 0.063 2.2E-06 46.4 1.7 20 185-204 4-23 (204)
171 3tif_A Uncharacterized ABC tra 91.4 0.054 1.9E-06 48.7 1.2 22 185-206 34-55 (235)
172 1rj9_A FTSY, signal recognitio 91.4 0.08 2.7E-06 49.6 2.4 25 184-208 104-128 (304)
173 3aez_A Pantothenate kinase; tr 91.4 0.079 2.7E-06 49.8 2.4 24 185-208 93-116 (312)
174 3ake_A Cytidylate kinase; CMP 91.3 0.074 2.5E-06 45.8 1.9 22 185-206 5-26 (208)
175 2c9o_A RUVB-like 1; hexameric 91.2 0.075 2.6E-06 52.5 2.1 25 183-207 64-88 (456)
176 3b85_A Phosphate starvation-in 91.2 0.078 2.7E-06 46.8 2.0 22 184-205 24-45 (208)
177 1rz3_A Hypothetical protein rb 91.1 0.082 2.8E-06 45.9 2.1 23 185-207 25-47 (201)
178 3a8t_A Adenylate isopentenyltr 91.0 0.078 2.7E-06 50.5 1.9 22 185-206 43-64 (339)
179 3b9q_A Chloroplast SRP recepto 90.9 0.095 3.2E-06 49.0 2.4 25 184-208 102-126 (302)
180 1ny5_A Transcriptional regulat 90.9 0.22 7.6E-06 48.0 5.1 117 177-316 155-280 (387)
181 2onk_A Molybdate/tungstate ABC 90.9 0.078 2.7E-06 47.9 1.7 24 183-206 25-48 (240)
182 3r20_A Cytidylate kinase; stru 90.9 0.094 3.2E-06 47.2 2.2 23 184-206 11-33 (233)
183 2f1r_A Molybdopterin-guanine d 90.8 0.058 2E-06 46.2 0.7 25 184-208 4-28 (171)
184 3e70_C DPA, signal recognition 90.7 0.11 3.6E-06 49.3 2.5 25 184-208 131-155 (328)
185 2pcj_A ABC transporter, lipopr 90.7 0.065 2.2E-06 47.8 1.0 22 185-206 33-54 (224)
186 2ehv_A Hypothetical protein PH 90.7 0.083 2.9E-06 46.8 1.7 21 184-204 32-52 (251)
187 3dzd_A Transcriptional regulat 90.6 0.41 1.4E-05 45.9 6.7 154 176-353 146-320 (368)
188 4eaq_A DTMP kinase, thymidylat 90.5 0.1 3.6E-06 46.5 2.2 24 185-208 29-52 (229)
189 2oap_1 GSPE-2, type II secreti 90.4 0.13 4.3E-06 51.9 2.9 32 175-206 253-284 (511)
190 4a74_A DNA repair and recombin 90.4 0.086 3E-06 46.1 1.5 22 185-206 28-49 (231)
191 1uj2_A Uridine-cytidine kinase 90.4 0.07 2.4E-06 48.1 0.9 23 185-207 25-47 (252)
192 1xjc_A MOBB protein homolog; s 90.4 0.13 4.4E-06 44.0 2.5 26 183-208 5-30 (169)
193 2v9p_A Replication protein E1; 90.2 0.12 3.9E-06 48.6 2.3 24 183-206 127-150 (305)
194 1vht_A Dephospho-COA kinase; s 90.2 0.1 3.5E-06 45.6 1.9 20 185-204 7-26 (218)
195 1uf9_A TT1252 protein; P-loop, 90.2 0.098 3.3E-06 44.8 1.7 22 184-205 10-31 (203)
196 2cbz_A Multidrug resistance-as 90.2 0.082 2.8E-06 47.6 1.2 21 185-205 34-54 (237)
197 2qt1_A Nicotinamide riboside k 90.1 0.084 2.9E-06 45.8 1.2 22 185-206 24-45 (207)
198 3gfo_A Cobalt import ATP-bindi 90.1 0.083 2.8E-06 48.8 1.2 22 185-206 37-58 (275)
199 3fvq_A Fe(3+) IONS import ATP- 90.1 0.092 3.2E-06 50.4 1.5 22 185-206 33-54 (359)
200 1b0u_A Histidine permease; ABC 90.1 0.084 2.9E-06 48.3 1.2 22 185-206 35-56 (262)
201 1np6_A Molybdopterin-guanine d 90.0 0.14 4.8E-06 43.8 2.5 25 183-207 7-31 (174)
202 1a7j_A Phosphoribulokinase; tr 90.0 0.12 4.2E-06 47.9 2.2 24 185-208 8-31 (290)
203 1g8f_A Sulfate adenylyltransfe 90.0 0.35 1.2E-05 48.6 5.7 59 150-208 353-421 (511)
204 1odf_A YGR205W, hypothetical 3 90.0 0.13 4.4E-06 47.8 2.4 24 185-208 34-57 (290)
205 1sgw_A Putative ABC transporte 90.0 0.088 3E-06 46.7 1.2 21 185-205 38-58 (214)
206 1g6h_A High-affinity branched- 90.0 0.087 3E-06 48.0 1.2 22 185-206 36-57 (257)
207 3cr8_A Sulfate adenylyltranfer 89.9 0.16 5.3E-06 51.7 3.1 56 152-207 329-394 (552)
208 1sq5_A Pantothenate kinase; P- 89.9 0.12 4E-06 48.3 2.1 23 185-207 83-105 (308)
209 4g1u_C Hemin import ATP-bindin 89.8 0.09 3.1E-06 48.2 1.2 22 185-206 40-61 (266)
210 3kta_A Chromosome segregation 89.8 0.11 3.6E-06 44.0 1.5 23 185-207 29-51 (182)
211 2ff7_A Alpha-hemolysin translo 89.8 0.093 3.2E-06 47.5 1.2 22 185-206 38-59 (247)
212 2d2e_A SUFC protein; ABC-ATPas 89.7 0.11 3.8E-06 47.0 1.7 21 185-205 32-52 (250)
213 2gza_A Type IV secretion syste 89.7 0.15 5E-06 48.9 2.6 32 175-206 168-199 (361)
214 1ji0_A ABC transporter; ATP bi 89.7 0.094 3.2E-06 47.2 1.2 22 185-206 35-56 (240)
215 2grj_A Dephospho-COA kinase; T 89.7 0.14 4.7E-06 44.6 2.2 22 185-206 15-36 (192)
216 1mv5_A LMRA, multidrug resista 89.7 0.095 3.3E-06 47.2 1.2 22 185-206 31-52 (243)
217 3rlf_A Maltose/maltodextrin im 89.7 0.11 3.8E-06 50.3 1.7 22 185-206 32-53 (381)
218 3tqc_A Pantothenate kinase; bi 89.7 0.13 4.6E-06 48.5 2.2 23 185-207 95-117 (321)
219 2zu0_C Probable ATP-dependent 89.6 0.11 3.9E-06 47.5 1.7 21 185-205 49-69 (267)
220 2qgz_A Helicase loader, putati 89.6 0.18 6E-06 47.2 3.0 26 182-207 152-177 (308)
221 1z47_A CYSA, putative ABC-tran 89.6 0.11 3.9E-06 49.7 1.7 22 185-206 44-65 (355)
222 1ltq_A Polynucleotide kinase; 89.5 0.12 4.2E-06 47.5 1.9 21 185-205 5-25 (301)
223 2og2_A Putative signal recogni 89.5 0.14 4.9E-06 49.1 2.4 25 184-208 159-183 (359)
224 1g41_A Heat shock protein HSLU 89.5 0.11 3.8E-06 51.3 1.6 25 182-206 50-74 (444)
225 2yyz_A Sugar ABC transporter, 89.5 0.12 4E-06 49.7 1.7 22 185-206 32-53 (359)
226 2olj_A Amino acid ABC transpor 89.5 0.1 3.4E-06 47.9 1.2 22 185-206 53-74 (263)
227 2it1_A 362AA long hypothetical 89.4 0.12 4.1E-06 49.7 1.7 22 185-206 32-53 (362)
228 2z4s_A Chromosomal replication 89.4 0.14 4.7E-06 50.4 2.2 26 182-207 130-155 (440)
229 2pze_A Cystic fibrosis transme 89.3 0.1 3.6E-06 46.6 1.2 21 185-205 37-57 (229)
230 1vpl_A ABC transporter, ATP-bi 89.3 0.1 3.6E-06 47.5 1.2 22 185-206 44-65 (256)
231 2p67_A LAO/AO transport system 89.3 0.3 1E-05 46.2 4.4 38 185-231 59-96 (341)
232 2ghi_A Transport protein; mult 89.2 0.11 3.7E-06 47.5 1.2 22 185-206 49-70 (260)
233 1g29_1 MALK, maltose transport 89.2 0.13 4.4E-06 49.7 1.7 22 185-206 32-53 (372)
234 1v43_A Sugar-binding transport 89.1 0.13 4.4E-06 49.7 1.7 22 185-206 40-61 (372)
235 2ixe_A Antigen peptide transpo 89.1 0.11 3.8E-06 47.7 1.2 22 185-206 48-69 (271)
236 2w0m_A SSO2452; RECA, SSPF, un 89.1 0.16 5.6E-06 44.1 2.2 23 185-207 26-48 (235)
237 2ihy_A ABC transporter, ATP-bi 89.0 0.11 3.9E-06 47.9 1.2 22 185-206 50-71 (279)
238 2qi9_C Vitamin B12 import ATP- 88.9 0.12 4E-06 47.0 1.2 22 185-206 29-50 (249)
239 1vma_A Cell division protein F 88.8 0.19 6.4E-06 47.1 2.5 26 183-208 105-130 (306)
240 2nq2_C Hypothetical ABC transp 88.7 0.12 4.2E-06 46.9 1.2 22 185-206 34-55 (253)
241 2yz2_A Putative ABC transporte 88.7 0.12 4.2E-06 47.2 1.2 22 185-206 36-57 (266)
242 3gd7_A Fusion complex of cysti 88.7 0.14 4.6E-06 49.8 1.5 22 185-206 50-71 (390)
243 1p9r_A General secretion pathw 88.6 0.17 5.8E-06 49.6 2.2 33 175-207 159-192 (418)
244 3v9p_A DTMP kinase, thymidylat 88.6 0.19 6.5E-06 45.0 2.4 25 185-209 28-52 (227)
245 4edh_A DTMP kinase, thymidylat 88.6 0.19 6.6E-06 44.4 2.4 24 185-208 9-32 (213)
246 2dhr_A FTSH; AAA+ protein, hex 88.6 0.14 4.8E-06 51.3 1.6 26 181-206 63-88 (499)
247 2yhs_A FTSY, cell division pro 88.5 0.18 6.3E-06 50.4 2.4 24 184-207 295-318 (503)
248 1q3t_A Cytidylate kinase; nucl 88.4 0.19 6.6E-06 44.6 2.3 22 185-206 19-40 (236)
249 3d31_A Sulfate/molybdate ABC t 88.4 0.11 3.8E-06 49.7 0.6 21 185-205 29-49 (348)
250 2px0_A Flagellar biosynthesis 88.3 0.19 6.5E-06 46.8 2.2 40 184-231 107-146 (296)
251 2qby_A CDC6 homolog 1, cell di 88.3 0.17 5.9E-06 47.5 2.0 26 182-207 45-70 (386)
252 2pt7_A CAG-ALFA; ATPase, prote 88.2 0.17 5.8E-06 47.9 1.8 29 178-206 167-195 (330)
253 1oix_A RAS-related protein RAB 88.1 0.17 5.9E-06 43.1 1.7 21 184-204 31-51 (191)
254 2f9l_A RAB11B, member RAS onco 88.1 0.19 6.3E-06 43.1 1.9 21 184-204 7-27 (199)
255 3crm_A TRNA delta(2)-isopenten 88.1 0.16 5.4E-06 48.1 1.5 23 184-206 7-29 (323)
256 2yv5_A YJEQ protein; hydrolase 88.1 0.25 8.5E-06 46.0 2.9 29 175-203 156-186 (302)
257 2pjz_A Hypothetical protein ST 88.0 0.14 4.9E-06 46.8 1.2 22 185-206 33-54 (263)
258 1lw7_A Transcriptional regulat 87.8 0.15 5.1E-06 48.7 1.2 24 183-206 171-194 (365)
259 4tmk_A Protein (thymidylate ki 87.8 0.23 7.9E-06 43.9 2.3 25 185-209 6-30 (213)
260 3tui_C Methionine import ATP-b 87.7 0.18 6.2E-06 48.5 1.7 21 185-205 57-77 (366)
261 1u0l_A Probable GTPase ENGC; p 87.7 0.24 8.2E-06 46.0 2.5 30 175-204 160-191 (301)
262 1oxx_K GLCV, glucose, ABC tran 87.6 0.11 3.9E-06 49.7 0.2 22 185-206 34-55 (353)
263 1qhl_A Protein (cell division 87.5 0.12 4.3E-06 46.2 0.4 23 185-207 30-52 (227)
264 3d3q_A TRNA delta(2)-isopenten 87.5 0.17 5.8E-06 48.2 1.4 24 184-207 9-32 (340)
265 2ga8_A Hypothetical 39.9 kDa p 87.5 0.24 8.2E-06 47.4 2.4 25 184-208 26-50 (359)
266 1svm_A Large T antigen; AAA+ f 87.4 0.21 7.3E-06 48.2 2.0 24 182-205 169-192 (377)
267 3llm_A ATP-dependent RNA helic 87.4 0.3 1E-05 43.3 2.9 32 171-202 65-96 (235)
268 3lv8_A DTMP kinase, thymidylat 87.2 0.26 8.9E-06 44.3 2.3 25 185-209 30-54 (236)
269 2ph1_A Nucleotide-binding prot 87.1 1.1 3.9E-05 40.1 6.7 36 189-233 26-61 (262)
270 3hjn_A DTMP kinase, thymidylat 87.0 0.29 1E-05 42.5 2.5 25 185-209 3-27 (197)
271 2ius_A DNA translocase FTSK; n 87.0 0.47 1.6E-05 47.7 4.3 44 184-234 169-212 (512)
272 2h92_A Cytidylate kinase; ross 87.0 0.19 6.7E-06 43.7 1.4 22 185-206 6-27 (219)
273 2bbs_A Cystic fibrosis transme 86.9 0.17 5.9E-06 47.0 1.0 21 185-205 67-87 (290)
274 3cf2_A TER ATPase, transitiona 86.8 0.13 4.5E-06 54.5 0.2 26 181-206 237-262 (806)
275 3nh6_A ATP-binding cassette SU 86.8 0.13 4.5E-06 48.2 0.1 23 184-206 82-104 (306)
276 2qag_B Septin-6, protein NEDD5 86.8 0.23 8E-06 48.7 1.9 21 185-205 45-65 (427)
277 1f2t_A RAD50 ABC-ATPase; DNA d 86.6 0.31 1.1E-05 40.4 2.3 23 185-207 26-48 (149)
278 1tq4_A IIGP1, interferon-induc 86.6 0.23 7.8E-06 48.6 1.7 32 173-204 60-91 (413)
279 3ld9_A DTMP kinase, thymidylat 86.6 0.32 1.1E-05 43.4 2.5 24 185-208 24-47 (223)
280 2npi_A Protein CLP1; CLP1-PCF1 86.4 0.23 7.9E-06 49.2 1.7 26 185-210 141-166 (460)
281 2f6r_A COA synthase, bifunctio 86.4 0.22 7.7E-06 45.7 1.5 20 185-204 78-97 (281)
282 2wji_A Ferrous iron transport 86.1 0.27 9.1E-06 40.7 1.7 20 184-203 5-24 (165)
283 2qm8_A GTPase/ATPase; G protei 86.1 0.3 1E-05 46.3 2.2 23 185-207 58-80 (337)
284 1n0w_A DNA repair protein RAD5 86.0 0.3 1E-05 42.9 2.1 22 184-205 26-47 (243)
285 1u0j_A DNA replication protein 86.0 0.26 9E-06 45.2 1.7 24 182-205 104-127 (267)
286 2cvh_A DNA repair and recombin 85.9 0.29 9.8E-06 42.3 1.9 20 185-204 23-42 (220)
287 1vec_A ATP-dependent RNA helic 85.9 0.66 2.2E-05 39.6 4.2 46 155-200 11-58 (206)
288 1cr0_A DNA primase/helicase; R 85.8 0.32 1.1E-05 44.7 2.2 23 185-207 38-60 (296)
289 2zej_A Dardarin, leucine-rich 85.8 0.26 9E-06 41.5 1.5 21 184-204 4-24 (184)
290 3iuy_A Probable ATP-dependent 85.8 0.47 1.6E-05 41.5 3.2 47 155-201 28-76 (228)
291 1z2a_A RAS-related protein RAB 85.7 0.31 1.1E-05 39.7 1.9 20 184-203 7-26 (168)
292 2ocp_A DGK, deoxyguanosine kin 85.6 0.24 8.3E-06 44.0 1.3 23 185-207 5-27 (241)
293 3tmk_A Thymidylate kinase; pho 85.6 0.33 1.1E-05 43.1 2.1 23 185-207 8-30 (216)
294 3zvl_A Bifunctional polynucleo 85.5 0.18 6.3E-06 49.1 0.5 21 185-205 261-281 (416)
295 3exa_A TRNA delta(2)-isopenten 85.5 0.24 8.2E-06 46.7 1.2 23 185-207 6-28 (322)
296 2vp4_A Deoxynucleoside kinase; 85.4 0.18 6E-06 44.8 0.2 21 185-205 23-43 (230)
297 2dyk_A GTP-binding protein; GT 85.4 0.32 1.1E-05 39.4 1.9 21 184-204 3-23 (161)
298 2ce2_X GTPase HRAS; signaling 85.3 0.31 1.1E-05 39.4 1.7 20 184-203 5-24 (166)
299 2qmh_A HPR kinase/phosphorylas 85.3 0.26 9E-06 43.3 1.3 25 182-206 34-58 (205)
300 3kl4_A SRP54, signal recogniti 85.3 0.38 1.3E-05 47.3 2.5 26 183-208 98-123 (433)
301 4hlc_A DTMP kinase, thymidylat 85.2 0.37 1.3E-05 42.2 2.2 23 185-207 5-27 (205)
302 3foz_A TRNA delta(2)-isopenten 85.1 0.28 9.7E-06 46.1 1.5 22 185-206 13-34 (316)
303 1kao_A RAP2A; GTP-binding prot 85.1 0.34 1.2E-05 39.3 1.9 20 184-203 5-24 (167)
304 2gxq_A Heat resistant RNA depe 85.0 0.88 3E-05 38.8 4.6 46 155-200 9-56 (207)
305 1ypw_A Transitional endoplasmi 85.0 0.33 1.1E-05 51.6 2.1 25 182-206 511-535 (806)
306 1zu4_A FTSY; GTPase, signal re 85.0 0.41 1.4E-05 45.1 2.6 26 183-208 106-131 (320)
307 2wjg_A FEOB, ferrous iron tran 85.0 0.33 1.1E-05 40.7 1.7 20 184-203 9-28 (188)
308 1nij_A Hypothetical protein YJ 84.9 0.34 1.1E-05 45.4 2.0 22 184-205 6-27 (318)
309 2ged_A SR-beta, signal recogni 84.8 0.35 1.2E-05 40.7 1.9 21 183-203 49-69 (193)
310 1u8z_A RAS-related protein RAL 84.7 0.37 1.3E-05 39.1 1.9 20 184-203 6-25 (168)
311 2axn_A 6-phosphofructo-2-kinas 84.7 0.39 1.3E-05 48.3 2.4 25 184-208 37-61 (520)
312 1ypw_A Transitional endoplasmi 84.6 0.31 1.1E-05 51.7 1.8 23 183-205 239-261 (806)
313 2qnr_A Septin-2, protein NEDD5 84.4 0.3 1E-05 45.4 1.4 20 185-204 21-40 (301)
314 2erx_A GTP-binding protein DI- 84.4 0.36 1.2E-05 39.4 1.7 20 184-203 5-24 (172)
315 1nlf_A Regulatory protein REPA 84.3 0.41 1.4E-05 43.6 2.2 25 183-207 31-55 (279)
316 1ek0_A Protein (GTP-binding pr 84.3 0.39 1.3E-05 39.1 1.9 20 184-203 5-24 (170)
317 2rcn_A Probable GTPase ENGC; Y 84.2 0.35 1.2E-05 46.3 1.7 21 184-204 217-237 (358)
318 1wms_A RAB-9, RAB9, RAS-relate 84.2 0.39 1.4E-05 39.6 1.9 20 184-203 9-28 (177)
319 2nzj_A GTP-binding protein REM 84.2 0.37 1.3E-05 39.6 1.7 20 184-203 6-25 (175)
320 1z0j_A RAB-22, RAS-related pro 84.1 0.4 1.4E-05 39.1 1.9 20 184-203 8-27 (170)
321 2www_A Methylmalonic aciduria 84.1 0.42 1.4E-05 45.4 2.2 23 185-207 77-99 (349)
322 1c1y_A RAS-related protein RAP 84.0 0.41 1.4E-05 38.9 1.9 20 184-203 5-24 (167)
323 2gj8_A MNME, tRNA modification 84.0 0.36 1.2E-05 40.3 1.5 19 185-203 7-25 (172)
324 1z08_A RAS-related protein RAB 84.0 0.41 1.4E-05 39.1 1.9 20 184-203 8-27 (170)
325 3tqf_A HPR(Ser) kinase; transf 83.9 0.36 1.2E-05 41.5 1.5 23 182-204 16-38 (181)
326 3ly5_A ATP-dependent RNA helic 83.9 1.1 3.6E-05 40.4 4.8 48 154-201 61-110 (262)
327 4gzl_A RAS-related C3 botulinu 83.8 0.38 1.3E-05 41.3 1.7 35 169-203 15-51 (204)
328 1ky3_A GTP-binding protein YPT 83.8 0.42 1.4E-05 39.5 1.9 21 183-203 9-29 (182)
329 1g16_A RAS-related protein SEC 83.7 0.4 1.4E-05 39.1 1.7 20 184-203 5-24 (170)
330 3q72_A GTP-binding protein RAD 83.7 0.35 1.2E-05 39.4 1.4 19 185-203 5-23 (166)
331 3q85_A GTP-binding protein REM 83.6 0.41 1.4E-05 39.2 1.7 19 185-203 5-23 (169)
332 1jr3_D DNA polymerase III, del 83.5 2.1 7.2E-05 39.9 6.9 129 180-352 16-154 (343)
333 1pui_A ENGB, probable GTP-bind 83.5 0.21 7E-06 42.9 -0.2 20 185-204 29-48 (210)
334 3eph_A TRNA isopentenyltransfe 83.4 0.44 1.5E-05 46.4 2.1 23 185-207 5-27 (409)
335 3p32_A Probable GTPase RV1496/ 83.4 0.75 2.6E-05 43.6 3.7 39 184-231 81-119 (355)
336 3euj_A Chromosome partition pr 83.4 0.46 1.6E-05 47.4 2.2 24 183-206 30-53 (483)
337 3qks_A DNA double-strand break 83.3 0.55 1.9E-05 40.9 2.5 24 185-208 26-49 (203)
338 3th5_A RAS-related C3 botulinu 83.9 0.23 7.8E-06 42.6 0.0 38 166-203 12-51 (204)
339 2fn4_A P23, RAS-related protei 83.3 0.43 1.5E-05 39.4 1.7 21 184-204 11-31 (181)
340 1nrj_B SR-beta, signal recogni 83.2 0.45 1.5E-05 41.1 1.9 21 183-203 13-33 (218)
341 3gmt_A Adenylate kinase; ssgci 83.2 0.44 1.5E-05 42.7 1.9 22 185-206 11-32 (230)
342 3qf7_A RAD50; ABC-ATPase, ATPa 83.2 0.48 1.6E-05 45.3 2.2 23 185-207 26-48 (365)
343 1r2q_A RAS-related protein RAB 83.2 0.47 1.6E-05 38.6 1.9 20 184-203 8-27 (170)
344 3bc1_A RAS-related protein RAB 83.0 0.47 1.6E-05 39.6 1.9 20 184-203 13-32 (195)
345 3cf2_A TER ATPase, transitiona 82.9 0.42 1.4E-05 50.6 1.9 26 181-206 510-535 (806)
346 1bif_A 6-phosphofructo-2-kinas 82.8 0.52 1.8E-05 46.6 2.4 24 184-207 41-64 (469)
347 4dsu_A GTPase KRAS, isoform 2B 82.7 0.49 1.7E-05 39.4 1.9 20 184-203 6-25 (189)
348 2pl3_A Probable ATP-dependent 82.6 0.98 3.4E-05 39.6 4.0 47 155-201 33-81 (236)
349 3tw8_B RAS-related protein RAB 82.6 0.44 1.5E-05 39.3 1.5 21 183-203 10-30 (181)
350 1m8p_A Sulfate adenylyltransfe 82.6 0.53 1.8E-05 48.0 2.4 57 152-208 356-422 (573)
351 3dkp_A Probable ATP-dependent 82.6 1 3.5E-05 39.7 4.1 45 156-200 38-84 (245)
352 1upt_A ARL1, ADP-ribosylation 82.6 0.51 1.7E-05 38.6 1.9 21 183-203 8-28 (171)
353 3fdi_A Uncharacterized protein 82.5 0.39 1.3E-05 41.9 1.2 24 184-207 8-31 (201)
354 1z0f_A RAB14, member RAS oncog 82.5 0.51 1.7E-05 38.8 1.9 21 183-203 16-36 (179)
355 2lkc_A Translation initiation 82.4 0.47 1.6E-05 39.1 1.7 21 183-203 9-29 (178)
356 2v3c_C SRP54, signal recogniti 82.3 0.94 3.2E-05 44.4 4.0 27 183-209 100-126 (432)
357 2hxs_A RAB-26, RAS-related pro 82.3 0.49 1.7E-05 39.0 1.7 20 184-203 8-27 (178)
358 1r8s_A ADP-ribosylation factor 82.3 0.53 1.8E-05 38.2 1.9 19 185-203 3-21 (164)
359 3con_A GTPase NRAS; structural 82.2 0.52 1.8E-05 39.5 1.9 20 184-203 23-42 (190)
360 1svi_A GTP-binding protein YSX 82.2 0.46 1.6E-05 40.0 1.5 21 183-203 24-44 (195)
361 2a9k_A RAS-related protein RAL 82.1 0.54 1.8E-05 39.0 1.9 21 183-203 19-39 (187)
362 3clv_A RAB5 protein, putative; 82.1 0.53 1.8E-05 39.5 1.9 21 184-204 9-29 (208)
363 2cxx_A Probable GTP-binding pr 82.0 0.47 1.6E-05 39.6 1.5 19 185-203 4-22 (190)
364 2oil_A CATX-8, RAS-related pro 82.0 0.54 1.8E-05 39.6 1.9 21 183-203 26-46 (193)
365 3upu_A ATP-dependent DNA helic 82.0 0.84 2.9E-05 44.8 3.6 26 184-209 47-72 (459)
366 1x6v_B Bifunctional 3'-phospho 82.0 0.55 1.9E-05 48.4 2.2 23 185-207 55-77 (630)
367 3zq6_A Putative arsenical pump 82.0 0.81 2.8E-05 42.8 3.3 45 186-240 18-62 (324)
368 1qde_A EIF4A, translation init 81.9 1.1 3.7E-05 38.9 3.9 45 155-199 22-68 (224)
369 2y8e_A RAB-protein 6, GH09086P 81.9 0.48 1.7E-05 39.0 1.5 20 184-203 16-35 (179)
370 2wsm_A Hydrogenase expression/ 81.9 0.56 1.9E-05 40.6 2.0 24 183-206 31-54 (221)
371 2qag_C Septin-7; cell cycle, c 81.8 0.46 1.6E-05 46.5 1.5 20 185-204 34-53 (418)
372 1p5z_B DCK, deoxycytidine kina 81.8 0.18 6.1E-06 45.6 -1.3 23 184-206 26-48 (263)
373 2g6b_A RAS-related protein RAB 81.8 0.56 1.9E-05 38.7 1.9 20 184-203 12-31 (180)
374 2efe_B Small GTP-binding prote 81.6 0.57 1.9E-05 38.7 1.9 20 184-203 14-33 (181)
375 2bov_A RAla, RAS-related prote 81.6 0.57 1.9E-05 39.7 1.9 20 184-203 16-35 (206)
376 3dm5_A SRP54, signal recogniti 81.5 0.62 2.1E-05 45.9 2.3 26 183-208 101-126 (443)
377 3pqc_A Probable GTP-binding pr 81.4 0.52 1.8E-05 39.5 1.5 21 183-203 24-44 (195)
378 1moz_A ARL1, ADP-ribosylation 81.3 0.34 1.1E-05 40.3 0.3 21 182-202 18-38 (183)
379 1yqt_A RNAse L inhibitor; ATP- 81.3 0.51 1.8E-05 47.6 1.7 23 184-206 49-71 (538)
380 1m7b_A RND3/RHOE small GTP-bin 81.2 0.56 1.9E-05 39.3 1.7 20 184-203 9-28 (184)
381 3kkq_A RAS-related protein M-R 81.2 0.57 1.9E-05 39.0 1.7 20 184-203 20-39 (183)
382 2bme_A RAB4A, RAS-related prot 81.1 0.57 1.9E-05 39.0 1.7 21 183-203 11-31 (186)
383 3t1o_A Gliding protein MGLA; G 81.1 0.61 2.1E-05 39.0 1.9 20 184-203 16-35 (198)
384 3iby_A Ferrous iron transport 81.0 0.77 2.6E-05 41.5 2.7 20 184-203 3-22 (256)
385 1j8m_F SRP54, signal recogniti 81.0 0.8 2.7E-05 42.5 2.8 26 183-208 99-124 (297)
386 2dr3_A UPF0273 protein PH0284; 81.0 0.71 2.4E-05 40.5 2.4 23 184-206 25-47 (247)
387 3fe2_A Probable ATP-dependent 81.0 1.2 4.1E-05 39.3 3.9 47 155-201 37-85 (242)
388 1t6n_A Probable ATP-dependent 80.9 1.6 5.3E-05 37.7 4.6 47 155-201 22-70 (220)
389 1mh1_A RAC1; GTP-binding, GTPa 80.8 0.63 2.2E-05 38.6 1.9 20 184-203 7-26 (186)
390 4b3f_X DNA-binding protein smu 80.7 0.75 2.6E-05 47.3 2.8 25 178-202 201-225 (646)
391 1m2o_B GTP-binding protein SAR 80.6 0.6 2.1E-05 39.6 1.7 20 184-203 25-44 (190)
392 3lxx_A GTPase IMAP family memb 80.6 0.59 2E-05 41.3 1.7 21 183-203 30-50 (239)
393 2gf9_A RAS-related protein RAB 80.5 0.65 2.2E-05 39.0 1.9 21 183-203 23-43 (189)
394 3k53_A Ferrous iron transport 80.5 0.57 1.9E-05 42.5 1.6 20 184-203 5-24 (271)
395 4ag6_A VIRB4 ATPase, type IV s 80.4 0.78 2.7E-05 43.9 2.6 24 184-207 37-60 (392)
396 2gf0_A GTP-binding protein DI- 80.4 0.62 2.1E-05 39.2 1.7 21 184-204 10-30 (199)
397 1fzq_A ADP-ribosylation factor 80.3 0.55 1.9E-05 39.4 1.4 21 183-203 17-37 (181)
398 1q0u_A Bstdead; DEAD protein, 80.3 1 3.5E-05 39.0 3.2 47 155-201 12-60 (219)
399 3j16_B RLI1P; ribosome recycli 80.3 0.58 2E-05 48.0 1.7 21 185-205 106-126 (608)
400 3bwd_D RAC-like GTP-binding pr 80.3 0.68 2.3E-05 38.3 1.9 20 184-203 10-29 (182)
401 2qen_A Walker-type ATPase; unk 80.3 0.88 3E-05 42.0 2.9 23 183-205 32-54 (350)
402 2iwr_A Centaurin gamma 1; ANK 80.2 0.59 2E-05 38.7 1.5 20 184-203 9-28 (178)
403 3ihw_A Centg3; RAS, centaurin, 80.2 0.67 2.3E-05 39.1 1.9 20 184-203 22-41 (184)
404 3b5x_A Lipid A export ATP-bind 80.1 0.57 1.9E-05 47.7 1.6 22 185-206 372-393 (582)
405 1ls1_A Signal recognition part 80.1 0.8 2.7E-05 42.4 2.5 26 183-208 99-124 (295)
406 1vg8_A RAS-related protein RAB 80.0 0.68 2.3E-05 39.3 1.9 20 184-203 10-29 (207)
407 2iut_A DNA translocase FTSK; n 80.0 1.1 3.6E-05 45.7 3.5 43 184-233 216-258 (574)
408 1t9h_A YLOQ, probable GTPase E 80.0 0.29 1E-05 45.8 -0.5 22 184-205 175-196 (307)
409 3t5g_A GTP-binding protein RHE 79.7 0.64 2.2E-05 38.6 1.5 20 184-203 8-27 (181)
410 3szr_A Interferon-induced GTP- 79.7 0.59 2E-05 47.9 1.6 21 185-205 48-68 (608)
411 1z06_A RAS-related protein RAB 79.7 0.72 2.5E-05 38.7 1.9 21 183-203 21-41 (189)
412 3ber_A Probable ATP-dependent 79.7 1.5 5E-05 39.2 4.1 47 155-201 51-99 (249)
413 2yl4_A ATP-binding cassette SU 79.7 0.57 2E-05 47.8 1.4 22 185-206 373-394 (595)
414 2z0m_A 337AA long hypothetical 79.7 1.4 4.9E-05 40.2 4.1 45 157-201 4-50 (337)
415 1zbd_A Rabphilin-3A; G protein 79.6 0.68 2.3E-05 39.3 1.7 21 183-203 9-29 (203)
416 2obl_A ESCN; ATPase, hydrolase 79.6 0.65 2.2E-05 44.2 1.7 32 175-206 62-95 (347)
417 2hf9_A Probable hydrogenase ni 79.5 0.76 2.6E-05 39.8 2.1 23 184-206 40-62 (226)
418 3tkl_A RAS-related protein RAB 79.5 0.73 2.5E-05 38.7 1.9 21 183-203 17-37 (196)
419 1f6b_A SAR1; gtpases, N-termin 79.4 0.57 2E-05 40.0 1.2 20 184-203 27-46 (198)
420 1zd9_A ADP-ribosylation factor 79.4 0.74 2.5E-05 38.7 1.9 21 183-203 23-43 (188)
421 2bcg_Y Protein YP2, GTP-bindin 79.3 0.7 2.4E-05 39.4 1.7 21 183-203 9-29 (206)
422 2atv_A RERG, RAS-like estrogen 79.3 0.75 2.6E-05 38.9 1.9 21 183-203 29-49 (196)
423 2a5j_A RAS-related protein RAB 79.3 0.75 2.6E-05 38.7 1.9 20 184-203 23-42 (191)
424 2fg5_A RAB-22B, RAS-related pr 79.3 0.7 2.4E-05 39.0 1.7 22 182-203 23-44 (192)
425 3cbq_A GTP-binding protein REM 79.2 0.56 1.9E-05 40.1 1.0 20 183-202 24-43 (195)
426 3c5c_A RAS-like protein 12; GD 79.2 0.76 2.6E-05 38.7 1.9 20 184-203 23-42 (187)
427 3dz8_A RAS-related protein RAB 79.1 0.72 2.5E-05 38.9 1.7 21 183-203 24-44 (191)
428 3qf4_B Uncharacterized ABC tra 79.1 0.61 2.1E-05 47.7 1.4 22 185-206 384-405 (598)
429 1w36_D RECD, exodeoxyribonucle 79.1 1.1 3.7E-05 45.9 3.3 39 171-209 153-191 (608)
430 3ug7_A Arsenical pump-driving 79.1 1 3.5E-05 42.7 2.9 45 185-239 29-73 (349)
431 3reg_A RHO-like small GTPase; 79.1 0.77 2.6E-05 38.7 1.9 21 183-203 24-44 (194)
432 1x3s_A RAS-related protein RAB 79.1 0.77 2.6E-05 38.4 1.9 20 184-203 17-36 (195)
433 3oes_A GTPase rhebl1; small GT 79.1 0.72 2.5E-05 39.3 1.7 21 183-203 25-45 (201)
434 2oxc_A Probable ATP-dependent 79.1 1.6 5.5E-05 38.2 4.0 46 155-200 32-79 (230)
435 1ksh_A ARF-like protein 2; sma 79.0 0.69 2.4E-05 38.6 1.5 22 182-203 18-39 (186)
436 1pzn_A RAD51, DNA repair and r 79.0 0.73 2.5E-05 43.7 1.9 22 185-206 134-155 (349)
437 2dpy_A FLII, flagellum-specifi 79.0 0.69 2.3E-05 45.5 1.7 32 175-206 148-181 (438)
438 3ozx_A RNAse L inhibitor; ATP 78.9 0.58 2E-05 47.3 1.2 22 185-206 28-49 (538)
439 2o52_A RAS-related protein RAB 78.9 0.47 1.6E-05 40.5 0.5 31 173-203 16-46 (200)
440 3b60_A Lipid A export ATP-bind 78.8 0.55 1.9E-05 47.8 1.0 22 185-206 372-393 (582)
441 1w5s_A Origin recognition comp 78.8 0.94 3.2E-05 43.0 2.6 26 183-208 51-78 (412)
442 1zj6_A ADP-ribosylation factor 78.6 0.72 2.5E-05 38.6 1.5 21 183-203 17-37 (187)
443 1yrb_A ATP(GTP)binding protein 78.5 1.3 4.3E-05 39.4 3.2 38 184-231 16-53 (262)
444 2p5s_A RAS and EF-hand domain 78.5 0.82 2.8E-05 38.8 1.9 21 183-203 29-49 (199)
445 2ew1_A RAS-related protein RAB 78.4 0.78 2.7E-05 39.5 1.7 22 182-203 26-47 (201)
446 3k9g_A PF-32 protein; ssgcid, 78.4 4 0.00014 36.4 6.6 33 189-231 35-67 (267)
447 4dzz_A Plasmid partitioning pr 78.3 2 6.8E-05 36.4 4.4 76 189-278 9-86 (206)
448 3cph_A RAS-related protein SEC 78.2 0.84 2.9E-05 38.9 1.9 22 182-203 20-41 (213)
449 1e9r_A Conjugal transfer prote 78.1 1.2 4E-05 43.3 3.1 55 151-206 22-77 (437)
450 3hdt_A Putative kinase; struct 78.1 0.79 2.7E-05 40.7 1.7 23 184-206 16-38 (223)
451 3bor_A Human initiation factor 78.1 1.2 4.1E-05 39.2 2.9 46 155-200 38-85 (237)
452 2q3h_A RAS homolog gene family 78.0 0.81 2.8E-05 38.7 1.7 22 182-203 20-41 (201)
453 2il1_A RAB12; G-protein, GDP, 77.9 0.77 2.6E-05 38.8 1.5 21 183-203 27-47 (192)
454 2fv8_A H6, RHO-related GTP-bin 77.9 0.81 2.8E-05 39.2 1.7 22 182-203 25-46 (207)
455 2fh5_B SR-beta, signal recogni 77.9 0.87 3E-05 39.0 1.9 21 183-203 8-28 (214)
456 2fu5_C RAS-related protein RAB 77.9 0.58 2E-05 38.9 0.7 21 183-203 9-29 (183)
457 1gwn_A RHO-related GTP-binding 77.8 0.69 2.4E-05 39.9 1.2 22 182-203 28-49 (205)
458 3t5d_A Septin-7; GTP-binding p 77.8 0.72 2.5E-05 41.9 1.4 20 184-203 10-29 (274)
459 2h17_A ADP-ribosylation factor 77.7 0.74 2.5E-05 38.4 1.4 21 183-203 22-42 (181)
460 2gks_A Bifunctional SAT/APS ki 77.5 0.99 3.4E-05 45.6 2.4 24 185-208 375-398 (546)
461 3j16_B RLI1P; ribosome recycli 77.4 0.58 2E-05 48.0 0.7 22 185-206 381-402 (608)
462 3ozx_A RNAse L inhibitor; ATP 77.4 0.68 2.3E-05 46.7 1.2 22 185-206 297-318 (538)
463 4bas_A ADP-ribosylation factor 77.4 0.81 2.8E-05 38.5 1.5 22 182-203 17-38 (199)
464 3bk7_A ABC transporter ATP-bin 77.3 0.68 2.3E-05 47.5 1.2 22 185-206 120-141 (607)
465 2f7s_A C25KG, RAS-related prot 77.3 0.87 3E-05 39.1 1.7 24 180-203 23-46 (217)
466 2b6h_A ADP-ribosylation factor 77.3 0.78 2.7E-05 38.9 1.4 19 184-202 31-49 (192)
467 2cjw_A GTP-binding protein GEM 77.1 0.89 3.1E-05 38.6 1.7 20 184-203 8-27 (192)
468 3b1v_A Ferrous iron uptake tra 76.7 0.9 3.1E-05 41.5 1.7 20 184-203 5-24 (272)
469 2j1l_A RHO-related GTP-binding 76.6 0.87 3E-05 39.3 1.5 21 183-203 35-55 (214)
470 3i8s_A Ferrous iron transport 76.6 1.4 4.7E-05 40.1 2.9 20 184-203 5-24 (274)
471 3kjh_A CO dehydrogenase/acetyl 76.6 1.1 3.6E-05 39.4 2.1 45 186-240 4-48 (254)
472 1hv8_A Putative ATP-dependent 76.5 2.1 7.3E-05 39.4 4.4 46 156-201 15-63 (367)
473 2gco_A H9, RHO-related GTP-bin 76.5 0.94 3.2E-05 38.6 1.7 22 182-203 25-46 (201)
474 2h57_A ADP-ribosylation factor 76.5 0.7 2.4E-05 38.8 0.8 21 183-203 22-42 (190)
475 2qu8_A Putative nucleolar GTP- 76.5 0.89 3E-05 39.7 1.5 21 183-203 30-50 (228)
476 2ffh_A Protein (FFH); SRP54, s 76.5 1.1 3.7E-05 43.9 2.3 26 183-208 99-124 (425)
477 4anj_A Unconventional myosin-V 76.4 2 6.8E-05 46.8 4.5 55 155-210 108-172 (1052)
478 1tf7_A KAIC; homohexamer, hexa 76.3 1.1 3.6E-05 45.0 2.2 18 185-202 42-59 (525)
479 3qkt_A DNA double-strand break 76.2 1.1 3.9E-05 42.0 2.3 22 186-207 27-48 (339)
480 2atx_A Small GTP binding prote 75.8 1 3.5E-05 37.9 1.7 21 184-204 20-40 (194)
481 1s2m_A Putative ATP-dependent 75.7 2.6 8.7E-05 39.8 4.7 47 155-201 29-77 (400)
482 3llu_A RAS-related GTP-binding 75.7 0.97 3.3E-05 38.3 1.5 21 183-203 21-41 (196)
483 3hr8_A Protein RECA; alpha and 75.6 1.2 4.2E-05 42.5 2.4 24 185-208 64-87 (356)
484 3a1s_A Iron(II) transport prot 75.5 1 3.5E-05 40.7 1.7 20 184-203 7-26 (258)
485 3bk7_A ABC transporter ATP-bin 75.4 0.98 3.3E-05 46.3 1.7 21 185-205 385-405 (607)
486 3lxw_A GTPase IMAP family memb 75.4 1 3.6E-05 40.2 1.7 21 183-203 22-42 (247)
487 2hup_A RAS-related protein RAB 75.3 1.1 3.6E-05 38.3 1.7 22 182-203 29-50 (201)
488 3fmo_B ATP-dependent RNA helic 75.3 1.6 5.5E-05 40.2 3.1 46 155-200 100-149 (300)
489 1yqt_A RNAse L inhibitor; ATP- 75.3 0.99 3.4E-05 45.5 1.7 21 185-205 315-335 (538)
490 2xxa_A Signal recognition part 75.2 1.7 5.9E-05 42.5 3.4 41 183-231 101-141 (433)
491 4a82_A Cystic fibrosis transme 75.2 0.52 1.8E-05 47.9 -0.4 21 185-205 370-390 (578)
492 2j0v_A RAC-like GTP-binding pr 75.2 1.1 3.7E-05 38.4 1.7 20 184-203 11-30 (212)
493 2woj_A ATPase GET3; tail-ancho 75.2 1.5 5E-05 41.7 2.8 57 173-239 7-67 (354)
494 1e69_A Chromosome segregation 75.1 1.1 3.8E-05 41.8 1.9 22 185-206 27-48 (322)
495 2fna_A Conserved hypothetical 74.9 1.2 4E-05 41.1 2.1 24 183-206 31-54 (357)
496 2i4i_A ATP-dependent RNA helic 74.8 1.7 5.9E-05 41.2 3.2 46 155-200 23-70 (417)
497 2woo_A ATPase GET3; tail-ancho 74.7 1.5 5.2E-05 41.0 2.8 45 185-239 22-66 (329)
498 2x77_A ADP-ribosylation factor 74.7 0.78 2.7E-05 38.4 0.7 21 182-202 22-42 (189)
499 2r8r_A Sensor protein; KDPD, P 74.6 2.5 8.5E-05 37.7 4.0 39 183-230 7-45 (228)
500 3cpj_B GTP-binding protein YPT 74.5 1.2 4.1E-05 38.6 1.9 21 183-203 14-34 (223)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=1.2e-80 Score=719.91 Aligned_cols=172 Identities=37% Similarity=0.774 Sum_probs=160.6
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHH
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILA 254 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~ 254 (367)
|++++.+|||+|++||+|||||++|++|++|++.+.+ .++.+++|||||+|+++|||++|+.|+||+||+|+
T Consensus 899 Lye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~--------~~~~~~~iNPKait~~eLyG~~d~~T~EW~DGvls 970 (3245)
T 3vkg_A 899 LHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDN--------IKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFT 970 (3245)
T ss_dssp HHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTT--------CEEEEEEECTTTSCHHHHHEEECTTTCCEEECHHH
T ss_pred HHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhC--------CCceEEEECCCCCchhhhceeecCCCCeeeccHHH
Confidence 5566779999999999999999999999999987743 24677899999999999999999999999999999
Q ss_pred HHHHHHhcC---CCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceee
Q psy4734 255 KTFREMAVS---TTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGM 331 (367)
Q Consensus 255 ~~~r~~~~~---~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~ 331 (367)
+++|+++.. +..+++|||||||||+.|||||||||||||+|||+|||||+++++|++||||+||++|||||||||||
T Consensus 971 ~i~R~~~~~~~~~~~~~~WIvfDGpVDa~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liFEv~dL~~ASPATVSRcGm 1050 (3245)
T 3vkg_A 971 ATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGM 1050 (3245)
T ss_dssp HHHHHHHTTSSSGGGEEEEEEEESCCCHHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEEEEESCCTTCCHHHHHTSEE
T ss_pred HHHHHHHhcccCCCCCceEEEECCCCCHHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEEEEeccccccChhhheeeeE
Confidence 999999753 34568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCchHHHHHHHHHHhhh
Q psy4734 332 IYFELKCISWTTFFLSYQNELKE 354 (367)
Q Consensus 332 v~~~~~~~~~~~~~~swl~~~~~ 354 (367)
|||++.++||+|++.||+++++.
T Consensus 1051 Vy~~~~~l~~~~~~~swl~~~~~ 1073 (3245)
T 3vkg_A 1051 VWFSEEILTTQMIFQNYLDTLSN 1073 (3245)
T ss_dssp EECCTTSSCHHHHHHHHHHHHTT
T ss_pred EEEcccccCchHHHHHHHHhCcc
Confidence 99999999999999999998864
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=2.9e-76 Score=681.69 Aligned_cols=174 Identities=32% Similarity=0.573 Sum_probs=160.3
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHH
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILA 254 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~ 254 (367)
+++++..|||||++||+|||||+++++|++|++.+.+ .++..+++|||++|++||||.+|++|++|+||+++
T Consensus 916 l~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~--------~~~~~~~inpk~~t~~el~G~~d~~t~eW~DGils 987 (2695)
T 4akg_A 916 FYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDG--------HANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFT 987 (2695)
T ss_dssp HHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTC--------CEEEEEEECTTTSCHHHHTTEECTTTCCEECCSHH
T ss_pred HHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcC--------CCceEEEeCCCCCCHHHhcceecCCCCeEecChHH
Confidence 4556679999999999999999999999999988753 24567789999999999999999999999999999
Q ss_pred HHHHHHhcCCC----CCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhcee
Q psy4734 255 KTFREMAVSTT----PDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG 330 (367)
Q Consensus 255 ~~~r~~~~~~~----~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg 330 (367)
+++|+++.... ..++|||||||+|+.|||+|||||||||+|||+|||||+++++|+++|||+||++||||||||||
T Consensus 988 ~~~R~~~~~~~~~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~dL~~ASPATVSRcG 1067 (2695)
T 4akg_A 988 SILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATITRCG 1067 (2695)
T ss_dssp HHHHHHHTCCCSSCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESCCTTSCHHHHHHSE
T ss_pred HHHHHHHhccccccCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecccccCCccceeeee
Confidence 99999876532 23899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecccCCchHHHHHHHHHHhhhhh
Q psy4734 331 MIYFELKCISWTTFFLSYQNELKEKL 356 (367)
Q Consensus 331 ~v~~~~~~~~~~~~~~swl~~~~~~~ 356 (367)
|||+++.++||+|++++|+++++..+
T Consensus 1068 mvy~~~~~l~~~~~~~~wl~~~~~~~ 1093 (2695)
T 4akg_A 1068 LLWFSTDVCSISSKIDHLLNKSYEAL 1093 (2695)
T ss_dssp EEECCSCSSCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCcCChHHHHHHHHHhcchhh
Confidence 99999999999999999999886543
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.83 E-value=8.2e-10 Score=130.18 Aligned_cols=121 Identities=22% Similarity=0.430 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCcccccCHHHHHHHhhc-------------------CCCcc--------
Q psy4734 67 MLKNFNKCNLMLELIQKGLNDYLEKKRL-FFPRFFFLSNDELLEILSE-------------------TKDPL-------- 118 (367)
Q Consensus 67 ~l~~l~~~~~~Le~i~k~L~~yLe~KR~-~FPRfyFLsdedLl~il~~-------------------~~~~~-------- 118 (367)
+.+....+...|..+...|+.|++.||. .+-.-.|.+.+|+..+|+. .++|.
T Consensus 221 f~~~v~~We~~L~~~~~il~~W~~vQ~~W~yLe~IF~~s~DI~~qLP~E~~rF~~vd~~~~~im~~~~~~~~v~~~~~~~ 300 (3245)
T 3vkg_A 221 FEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIAILKKVSGAPLILEVLAIE 300 (3245)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CTTTSHHHHHHHHHHHHHHHHHHHHHHHSCBHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceEeecCcc
Confidence 3345668888999999999999999998 3333334444554443331 12222
Q ss_pred chhhhHHHHHHHhHhhhhhhhhhh--cccCCCceeecchHHHHHHHHhcCCcccchhhHHHHHhhhhhhee
Q psy4734 119 RVQPHLKKIFEASMALISGLVATL--NLLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEVRHGLMV 187 (367)
Q Consensus 119 ~i~~~l~k~f~~i~~l~~~l~~~~--~~~~fprf~f~s~~~Ll~ils~~~~~~~lq~~l~k~~~~~~~v~~ 187 (367)
.+...++++-+....+..+|.+.+ +|..||||||+||+||++||+++++|..+|+|+.|||++.+.+.|
T Consensus 301 ~~~~~L~~~~~~Le~iqk~L~~yLE~KR~~FPRFyFlSd~eLLeILs~~~dp~~vq~hl~K~F~~I~~l~f 371 (3245)
T 3vkg_A 301 RIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKIQKHFRKMFAGLANLTL 371 (3245)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHGGGCGGGTGGGGGGTCSSCCEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhccCcHHHHHHHHcCCChHHHHHHHHHHHhhhheEEe
Confidence 233456666666677777777765 889999999999999999999999999999999999997766654
No 4
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.82 E-value=2.8e-09 Score=124.94 Aligned_cols=121 Identities=21% Similarity=0.238 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCcccccCHHHHHHHhhc-------------------CCCccc------
Q psy4734 66 DMLKNFNKCNLMLELIQKGLNDYLEKKRL-FFPRFFFLSNDELLEILSE-------------------TKDPLR------ 119 (367)
Q Consensus 66 ~~l~~l~~~~~~Le~i~k~L~~yLe~KR~-~FPRfyFLsdedLl~il~~-------------------~~~~~~------ 119 (367)
.+.+....+...|..++..|+.|++.||. .+-.-.|.+.+|+.++|+. .++|..
T Consensus 279 ~f~~~~~~w~~~L~~~~~~l~~w~~vQ~~W~yLe~iF~~s~di~~qLp~e~~~F~~vd~~~~~im~~~~~~~~v~~~~~~ 358 (2695)
T 4akg_A 279 IFEQDCLDLESKLTKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVIHI 358 (2695)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCCSGGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccc
Confidence 45556778889999999999999999998 4444455566666665542 223322
Q ss_pred --hhhhHHHHHHHhHhhhhhhhhhh--cccCCCceeecchHHHHHHHHhcCCcccchhhHHHHHhhhhhhe
Q psy4734 120 --VQPHLKKIFEASMALISGLVATL--NLLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEVRHGLM 186 (367)
Q Consensus 120 --i~~~l~k~f~~i~~l~~~l~~~~--~~~~fprf~f~s~~~Ll~ils~~~~~~~lq~~l~k~~~~~~~v~ 186 (367)
+...|+++.+....+..+|.+.+ +|..||||||+||+||++++++++++..+|+|+.|||++.+.+.
T Consensus 359 ~~~~~~L~~~~~~Le~iqk~L~~yLe~KR~~FPRFyFlsd~eLLeiLs~~~dp~~vq~hl~k~F~~i~~l~ 429 (2695)
T 4akg_A 359 PNFDTTLKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESII 429 (2695)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHCHHHHHHHHHTTTTSGGGHHHHHHHTSSEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceecCcHHHHHHHhcCCCHHHHHHHHHHHhhhhhhEE
Confidence 22346666666677777777765 88999999999999999999999999999999999999776654
No 5
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.75 E-value=4.5e-05 Score=72.38 Aligned_cols=145 Identities=21% Similarity=0.294 Sum_probs=82.5
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhh--c-----ccccc------------ceeEEEEeCCCCCccccccceec
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKK--S-----ATMKE------------FKTGYKIINPKSITMGQLYGEFD 242 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~--~-----~~~~~------------~~v~~~~inpka~t~~~l~G~~d 242 (367)
..++++.||+|+|||++.+.++..+....... . .+... .+..+.. -|...+..+++|..+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~ 123 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVD-LPLGVSEDRVVGALD 123 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEE-ECTTCCHHHHHCEEC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccc-cCCCcchhhheeech
Confidence 45699999999999999999887653210000 0 00000 0000111 123344556777643
Q ss_pred cc------ccccccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEe
Q psy4734 243 SA------SHEWRDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE 314 (367)
Q Consensus 243 ~~------~~~W~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE 314 (367)
.. ...+..|.+... ....+++| ..++..-.+.|..++++.....-..|.....+.++.+|.-
T Consensus 124 ~~~~~~~~~~~~~~g~~~~a----------~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~ 193 (350)
T 1g8p_A 124 IERAISKGEKAFEPGLLARA----------NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGS 193 (350)
T ss_dssp HHHHHHHCGGGEECCHHHHH----------TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEE
T ss_pred hhhhhcCCceeecCceeeec----------CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEE
Confidence 21 123455554322 24689999 3344555555656665543333445666777777777776
Q ss_pred cCCCC-ccCcchhhceee-EEeccc
Q psy4734 315 CENLE-FASPATVSRVGM-IYFELK 337 (367)
Q Consensus 315 ~~~l~-~asPatvsRcg~-v~~~~~ 337 (367)
+.... ...|+..+||++ +++.+-
T Consensus 194 ~n~~~~~l~~~L~~R~~~~~~l~~~ 218 (350)
T 1g8p_A 194 GNPEEGDLRPQLLDRFGLSVEVLSP 218 (350)
T ss_dssp ECSCSCCCCHHHHTTCSEEEECCCC
T ss_pred eCCCCCCCCHHHHhhcceEEEcCCC
Confidence 55323 688999999998 778765
No 6
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.53 E-value=6e-05 Score=70.35 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=84.8
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC----ccccccceeccccccccc-chHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI----TMGQLYGEFDSASHEWRD-GILAKTF 257 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~----t~~~l~G~~d~~~~~W~d-Gil~~~~ 257 (367)
+.++|.||+|+|||++.+.++..+..-. .++ ..++...+ ...+++|.... ...+.. |.+..++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~---------~~~--~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~ 115 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTE---------EAM--IRIDMTEYMEKHAVSRLIGAPPG-YVGYEEGGQLTEAV 115 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCG---------GGE--EEEEGGGCCSTTHHHHHHCCCTT-STTTTTCCHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCC---------cce--EEeecccccccccHHHhcCCCCc-cccccccchHHHHH
Confidence 4688999999999999999988764211 112 22333332 24556665322 223333 6777776
Q ss_pred HHHhcCCCCCceEEEEcC--CCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCC------------------
Q psy4734 258 REMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN------------------ 317 (367)
Q Consensus 258 r~~~~~~~~~~~wivfDG--~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~------------------ 317 (367)
+.. ....+++|- .+++.-...|..+|++. .+.-..|..+.+++ ..+|+-+..
T Consensus 116 ~~~------~~~vl~lDEi~~l~~~~~~~Ll~~le~~-~~~~~~~~~~~~~~-~iiI~ttn~~~~~i~~~~~~~~~~~~l 187 (311)
T 4fcw_A 116 RRR------PYSVILFDAIEKAHPDVFNILLQMLDDG-RLTDSHGRTVDFRN-TVIIMTSNLGSPLILEGLQKGWPYERI 187 (311)
T ss_dssp HHC------SSEEEEEETGGGSCHHHHHHHHHHHHHS-EEECTTSCEEECTT-EEEEEEESTTHHHHHTTTTSCCCSSTH
T ss_pred HhC------CCeEEEEeChhhcCHHHHHHHHHHHhcC-EEEcCCCCEEECCC-cEEEEecccCHHHHHhhhcccccHHHH
Confidence 653 246899992 23444455555555543 33334455555543 336665544
Q ss_pred --------CCccCcchhhcee-eEEecccCC-chHHHHHHHHHHh
Q psy4734 318 --------LEFASPATVSRVG-MIYFELKCI-SWTTFFLSYQNEL 352 (367)
Q Consensus 318 --------l~~asPatvsRcg-~v~~~~~~~-~~~~~~~swl~~~ 352 (367)
.....|+..+||. ++.+.|-.- ....++...++..
T Consensus 188 ~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 188 RDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp HHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2367899999994 555555331 1334445445443
No 7
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.53 E-value=0.0002 Score=67.80 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=80.9
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
..+++.||+|+|||++.+.++..++ .....++..++. ..|-+..+++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~--------------~~~~~~~~~~~~---------------~~~~~~~~~~~--- 103 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS--------------ANIKTTAAPMIE---------------KSGDLAAILTN--- 103 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT--------------CCEEEEEGGGCC---------------SHHHHHHHHHT---
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC--------------CCeEEecchhcc---------------chhHHHHHHHh---
Confidence 4689999999999999988865431 112223332221 12233334433
Q ss_pred CCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeeccc----c--eeecCCCCeEEEecCCCCccCcchhhce-eeEE
Q psy4734 263 STTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLING----E--IIKMSNTMNLIFECENLEFASPATVSRV-GMIY 333 (367)
Q Consensus 263 ~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~g----e--~i~l~~~~~~ifE~~~l~~asPatvsRc-g~v~ 333 (367)
......+++| +.+.+.+.+.|..++++.....+..+ . ++.++ ++.+|.-+.......|+..+|| -.++
T Consensus 104 --~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~~l~~~L~~R~~~~i~ 180 (338)
T 3pfi_A 104 --LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAGMLSNPLRDRFGMQFR 180 (338)
T ss_dssp --CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGGGSCHHHHTTCSEEEE
T ss_pred --ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCccccCHHHHhhcCEEee
Confidence 2345789999 44567788888888877654433221 2 22333 6889999999888999999999 5667
Q ss_pred ecccCCc-hHHHHHHHHHH
Q psy4734 334 FELKCIS-WTTFFLSYQNE 351 (367)
Q Consensus 334 ~~~~~~~-~~~~~~swl~~ 351 (367)
+.+-... ...++...+..
T Consensus 181 l~~~~~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 181 LEFYKDSELALILQKAALK 199 (338)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 7665322 33344444443
No 8
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.46 E-value=0.00014 Score=67.89 Aligned_cols=141 Identities=16% Similarity=0.149 Sum_probs=79.3
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
+.++|.||||+|||++.+.++..+....... ......+++..+. .+++|.. . +-+..+++.+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~l~-~~~~g~~----~----~~~~~~~~~~-- 129 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVR-------KGHLVSVTRDDLV-GQYIGHT----A----PKTKEVLKRA-- 129 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSS-------SCCEEEECGGGTC-CSSTTCH----H----HHHHHHHHHH--
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcC-------CCcEEEEcHHHhh-hhccccc----H----HHHHHHHHhc--
Confidence 3589999999999999999998876532110 1123345554442 3344421 1 1223344443
Q ss_pred CCCCCceEEEEcCCC------------ChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCC-----CCccCcch
Q psy4734 263 STTPDRKWIMFDGPI------------DAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-----LEFASPAT 325 (367)
Q Consensus 263 ~~~~~~~wivfDG~~------------d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~-----l~~asPat 325 (367)
....+++| ++ +....+.|..++++. +.++.+|+-+.. +....|+.
T Consensus 130 ----~~~vl~iD-Eid~l~~~~~~~~~~~~~~~~Ll~~l~~~-------------~~~~~~i~~~~~~~~~~~~~~~~~l 191 (309)
T 3syl_A 130 ----MGGVLFID-EAYYLYRPDNERDYGQEAIEILLQVMENN-------------RDDLVVILAGYADRMENFFQSNPGF 191 (309)
T ss_dssp ----TTSEEEEE-TGGGSCCCC---CCTHHHHHHHHHHHHHC-------------TTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred ----CCCEEEEE-ChhhhccCCCcccccHHHHHHHHHHHhcC-------------CCCEEEEEeCChHHHHHHHhhCHHH
Confidence 23588888 33 444455555666543 234555554421 22345999
Q ss_pred hhce-eeEEecccCC-chHHHHHHHHHHhhhhhhHH
Q psy4734 326 VSRV-GMIYFELKCI-SWTTFFLSYQNELKEKLNEE 359 (367)
Q Consensus 326 vsRc-g~v~~~~~~~-~~~~~~~swl~~~~~~~~~~ 359 (367)
.+|| -.+++.+-+- ....++..++......+.++
T Consensus 192 ~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~ 227 (309)
T 3syl_A 192 RSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPE 227 (309)
T ss_dssp HHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHH
T ss_pred HHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHH
Confidence 9999 6777776542 35556666666544444443
No 9
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.40 E-value=0.0013 Score=57.09 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=68.7
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhcC
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 263 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~ 263 (367)
.+++.||+|+|||++.+.+++.+..-.. .+.+..+++.... | ...+...+......
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~---------~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENW---------RDNFIEMNASDER-----G----------IDVVRHKIKEFART 95 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGG---------GGGEEEEETTCTT-----C----------HHHHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccc---------ccceEEecccccc-----C----------hHHHHHHHHHHhcc
Confidence 4889999999999999998876642211 1122223332110 0 01122223332221
Q ss_pred ---CCCCceEEEEcC--CCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccC
Q psy4734 264 ---TTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKC 338 (367)
Q Consensus 264 ---~~~~~~wivfDG--~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~ 338 (367)
....+..+++|. .++....+.|..++++. ++++.+|+-+.......|+..+||..+.+.+-.
T Consensus 96 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~ 162 (226)
T 2chg_A 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (226)
T ss_dssp CCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred cCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChhhcCHHHHHhCceeecCCCC
Confidence 234578999993 23344455555555431 345667777766677889999999998887654
No 10
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.39 E-value=0.00052 Score=72.49 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=89.8
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCC----CCCccccccceecccccccccchHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINP----KSITMGQLYGEFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inp----ka~t~~~l~G~~d~~~~~W~dGil~~~~r~ 259 (367)
.++|.||+|+|||++.+.++..+. . ....++. ...+...++|.-..-.+.=..|.+...+|+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~----~----------~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~ 555 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG----I----------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK 555 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT----C----------EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc----C----------CEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh
Confidence 478999999999999999988762 1 1222332 233466777753110011123566677765
Q ss_pred HhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCC------------------
Q psy4734 260 MAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE------------------ 319 (367)
Q Consensus 260 ~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~------------------ 319 (367)
. ....++|| ...++...+.|..+||+. .++-..|..+.+ .++.+|+-+..-.
T Consensus 556 ~------~~~vl~lDEi~~~~~~~~~~Ll~~le~~-~~~~~~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~ 627 (758)
T 1r6b_X 556 H------PHAVLLLDEIEKAHPDVFNILLQVMDNG-TLTDNNGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTD 627 (758)
T ss_dssp C------SSEEEEEETGGGSCHHHHHHHHHHHHHS-EEEETTTEEEEC-TTEEEEEEECSSCC-----------------
T ss_pred C------CCcEEEEeCccccCHHHHHHHHHHhcCc-EEEcCCCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHH
Confidence 3 35799999 345666777777888764 455566766666 4555665443211
Q ss_pred -------ccCcchhhce-eeEEecccCC-chHHHHHHHHHHh
Q psy4734 320 -------FASPATVSRV-GMIYFELKCI-SWTTFFLSYQNEL 352 (367)
Q Consensus 320 -------~asPatvsRc-g~v~~~~~~~-~~~~~~~swl~~~ 352 (367)
...|+..+|| .+|++.+-.- ....++...+..+
T Consensus 628 ~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~ 669 (758)
T 1r6b_X 628 AMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_dssp CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHH
Confidence 5789999999 6677766432 2344555555443
No 11
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.37 E-value=0.00018 Score=67.38 Aligned_cols=132 Identities=12% Similarity=0.131 Sum_probs=69.6
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHh
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 261 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~ 261 (367)
..++++.||||+|||++.+.++..++ ..+..+++ .++.+.+- .-..+.+..+++.+.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~--------------~~~i~v~~-----~~l~~~~~----g~~~~~i~~~f~~a~ 92 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG--------------INPIMMSA-----GELESGNA----GEPAKLIRQRYREAA 92 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT--------------CCCEEEEH-----HHHHCC-------HHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEeH-----HHhhhccC----chhHHHHHHHHHHHH
Confidence 45788899999999999999988762 11122222 22222211 011233444444442
Q ss_pred cC-CCCCceEEEEcCCCCh----------------HhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcc
Q psy4734 262 VS-TTPDRKWIMFDGPIDA----------------VWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPA 324 (367)
Q Consensus 262 ~~-~~~~~~wivfDG~~d~----------------~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPa 324 (367)
.. ....+..+++| ++|. .....|..+||+.....+...+...-.+++.+|.=+.+.....||
T Consensus 93 ~~~~~~~~~vl~iD-EiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~a 171 (293)
T 3t15_A 93 EIIRKGNMCCLFIN-DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAP 171 (293)
T ss_dssp HHHTTSSCCCEEEE-CCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CH
T ss_pred HHHhcCCCeEEEEe-chhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHH
Confidence 11 23456788888 4432 233566667776554455444444445678888888888888899
Q ss_pred hh--hceeeEEeccc
Q psy4734 325 TV--SRVGMIYFELK 337 (367)
Q Consensus 325 tv--sRcg~v~~~~~ 337 (367)
.. .|+-.++.-|+
T Consensus 172 l~R~~R~d~~i~~P~ 186 (293)
T 3t15_A 172 LIRDGRMEKFYWAPT 186 (293)
T ss_dssp HHHHHHEEEEEECCC
T ss_pred HhCCCCCceeEeCcC
Confidence 88 47776444453
No 12
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.37 E-value=0.0013 Score=61.52 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=75.3
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc-cccccceecccccccccchHHHHHHHHh
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYGEFDSASHEWRDGILAKTFREMA 261 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t-~~~l~G~~d~~~~~W~dGil~~~~r~~~ 261 (367)
+++++.||+|+|||++.+.++..++ .....++..+++ .++++| .++.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~--------------~~~~~~~~~~~~~~~~l~~----------------~l~~-- 86 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG--------------VNLRVTSGPAIEKPGDLAA----------------ILAN-- 86 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT--------------CCEEEECTTTCCSHHHHHH----------------HHTT--
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEEeccccCChHHHHH----------------HHHH--
Confidence 6799999999999999998877552 112234544432 112221 2221
Q ss_pred cCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccc----eee-cCCCCeEEEecCCCCccCcchhhcee-eEE
Q psy4734 262 VSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGE----IIK-MSNTMNLIFECENLEFASPATVSRVG-MIY 333 (367)
Q Consensus 262 ~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge----~i~-l~~~~~~ifE~~~l~~asPatvsRcg-~v~ 333 (367)
.......+++| +.++....+.|..++++.....+.... .+. -.+++.+|.-+.......|+..+||+ .+.
T Consensus 87 --~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~ 164 (324)
T 1hqc_A 87 --SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEH 164 (324)
T ss_dssp --TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEE
T ss_pred --hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEe
Confidence 12345799999 335555666676777665433322111 121 23468899999888889999999996 777
Q ss_pred ecccC
Q psy4734 334 FELKC 338 (367)
Q Consensus 334 ~~~~~ 338 (367)
+.+-.
T Consensus 165 l~~~~ 169 (324)
T 1hqc_A 165 LEYYT 169 (324)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 77543
No 13
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.33 E-value=0.00036 Score=65.97 Aligned_cols=130 Identities=16% Similarity=0.142 Sum_probs=77.5
Q ss_pred hhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceec--cccc--ccccchHHH
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFD--SASH--EWRDGILAK 255 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d--~~~~--~W~dGil~~ 255 (367)
....++++.||||+|||++.+.++..+.. ++.....+|. .+..++.|... +..+ .|..|.+
T Consensus 44 ~~~~~vll~G~pGtGKT~la~~la~~~~~------------~~~~i~~~~~-~~~~~l~g~~~~~~~~~~~~~~~g~l-- 108 (331)
T 2r44_A 44 CTGGHILLEGVPGLAKTLSVNTLAKTMDL------------DFHRIQFTPD-LLPSDLIGTMIYNQHKGNFEVKKGPV-- 108 (331)
T ss_dssp HHTCCEEEESCCCHHHHHHHHHHHHHTTC------------CEEEEECCTT-CCHHHHHEEEEEETTTTEEEEEECTT--
T ss_pred HcCCeEEEECCCCCcHHHHHHHHHHHhCC------------CeEEEecCCC-CChhhcCCceeecCCCCceEeccCcc--
Confidence 34568999999999999999988775521 1111112222 23455666542 2222 2444433
Q ss_pred HHHHHhcCCCCCceEEEEcC--CCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCC------ccCcchhh
Q psy4734 256 TFREMAVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE------FASPATVS 327 (367)
Q Consensus 256 ~~r~~~~~~~~~~~wivfDG--~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~------~asPatvs 327 (367)
...++++|. .+++.-...|..++++. ..++ .|..+..+..+.++ -+++-. ...|+..+
T Consensus 109 -----------~~~vl~iDEi~~~~~~~~~~Ll~~l~~~-~~~~-~g~~~~~~~~~~vi-at~np~~~~~~~~l~~~l~~ 174 (331)
T 2r44_A 109 -----------FSNFILADEVNRSPAKVQSALLECMQEK-QVTI-GDTTYPLDNPFLVL-ATQNPVEQEGTYPLPEAQVD 174 (331)
T ss_dssp -----------CSSEEEEETGGGSCHHHHHHHHHHHHHS-EEEE-TTEEEECCSSCEEE-EEECTTCCSCCCCCCHHHHT
T ss_pred -----------cccEEEEEccccCCHHHHHHHHHHHhcC-ceee-CCEEEECCCCEEEE-EecCCCcccCcccCCHHHHh
Confidence 136899992 23444444555555543 3444 57777888777666 444422 27899999
Q ss_pred ceee-EEecccC
Q psy4734 328 RVGM-IYFELKC 338 (367)
Q Consensus 328 Rcg~-v~~~~~~ 338 (367)
||++ +++++-+
T Consensus 175 Rf~~~i~i~~p~ 186 (331)
T 2r44_A 175 RFMMKIHLTYLD 186 (331)
T ss_dssp TSSEEEECCCCC
T ss_pred heeEEEEcCCCC
Confidence 9997 8887654
No 14
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.29 E-value=0.001 Score=63.27 Aligned_cols=145 Identities=11% Similarity=0.086 Sum_probs=79.8
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhc-c---------ccccceeEEEEeCCCCCccccccceecccccccccc
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS-A---------TMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDG 251 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~-~---------~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dG 251 (367)
.|.++|.||+|+|||++.+.+++++..-..... + ...+....+..++|..- +.+-.-.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~------------~~~~~i~ 91 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG------------KNTLGVD 91 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT------------CSSBCHH
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc------------CCCCCHH
Confidence 356899999999999999999988742110000 0 00000011222333210 0111101
Q ss_pred hHHHHHHHHhcCC-CCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhcee
Q psy4734 252 ILAKTFREMAVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG 330 (367)
Q Consensus 252 il~~~~r~~~~~~-~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg 330 (367)
.+-.+++.+.... ...++-+|+| ++|..-.+..|.+|. . | | ..++++.+|+=+++....-|+..|||.
T Consensus 92 ~ir~l~~~~~~~~~~~~~kvviId-ead~l~~~a~naLLk---~--l---E--ep~~~~~~Il~t~~~~~l~~ti~SRc~ 160 (334)
T 1a5t_A 92 AVREVTEKLNEHARLGGAKVVWVT-DAALLTDAAANALLK---T--L---E--EPPAETWFFLATREPERLLATLRSRCR 160 (334)
T ss_dssp HHHHHHHHTTSCCTTSSCEEEEES-CGGGBCHHHHHHHHH---H--H---T--SCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHHHHHhhccccCCcEEEEEC-chhhcCHHHHHHHHH---H--h---c--CCCCCeEEEEEeCChHhCcHHHhhcce
Confidence 1223333333222 2457899999 455443344444431 0 1 1 124567888888888889999999999
Q ss_pred eEEecccCCchHHHHHHHHHHh
Q psy4734 331 MIYFELKCISWTTFFLSYQNEL 352 (367)
Q Consensus 331 ~v~~~~~~~~~~~~~~swl~~~ 352 (367)
.+.+.+-. ..-+..||...
T Consensus 161 ~~~~~~~~---~~~~~~~L~~~ 179 (334)
T 1a5t_A 161 LHYLAPPP---EQYAVTWLSRE 179 (334)
T ss_dssp EEECCCCC---HHHHHHHHHHH
T ss_pred eeeCCCCC---HHHHHHHHHHh
Confidence 99998654 24455677654
No 15
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.29 E-value=0.00014 Score=67.62 Aligned_cols=132 Identities=13% Similarity=0.196 Sum_probs=70.8
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHh
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 261 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~ 261 (367)
.++++|.||||+|||++.+.++..+.. ....+++..+....+.|. . ..+.+..++....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~--------------~~~~i~~~~~~~~~~~~~---~----~~~~~~~~~~~~~ 108 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANA--------------PFIKVEATKFTEVGYVGK---E----VDSIIRDLTDSAG 108 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC--------------CEEEEEGGGGSSCCSGGG---S----TTHHHHHHHHTTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC--------------CEEEEcchhcccCCccCc---c----HHHHHHHHHHHhh
Confidence 467899999999999999998876621 123344443322222221 0 1122333222110
Q ss_pred cC--CCCCceEEEEcCCCChHh---------------hhhhhhccCCCCceeecccceeecCCCCeEEEe----cCCCCc
Q psy4734 262 VS--TTPDRKWIMFDGPIDAVW---------------IENMNTVLDDNKKLCLINGEIIKMSNTMNLIFE----CENLEF 320 (367)
Q Consensus 262 ~~--~~~~~~wivfDG~~d~~w---------------ie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE----~~~l~~ 320 (367)
.. .......+++| ++|..- ...|..++++.. +...+| ..-++++.+|.- +.+...
T Consensus 109 ~~~~~~~~~~vl~iD-Ei~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~-~~~~~~--~~~~~~~~~i~~~~~~~~~~~~ 184 (310)
T 1ofh_A 109 GAIDAVEQNGIVFID-EIDKICKKGEYSGADVSREGVQRDLLPLVEGST-VSTKHG--MVKTDHILFIASGAFQVARPSD 184 (310)
T ss_dssp TCHHHHHHHCEEEEE-CGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCE-EEETTE--EEECTTCEEEEEECCSSSCGGG
T ss_pred HHHhhccCCCEEEEE-ChhhcCccccccccchhHHHHHHHHHHHhcCCe-Eecccc--cccCCcEEEEEcCCcccCCccc
Confidence 00 00124688999 443332 334445555433 222333 223456666665 445667
Q ss_pred cCcchhhceee-EEecccC
Q psy4734 321 ASPATVSRVGM-IYFELKC 338 (367)
Q Consensus 321 asPatvsRcg~-v~~~~~~ 338 (367)
..|+..+||.+ +++.+-.
T Consensus 185 l~~~l~~R~~~~i~~~~~~ 203 (310)
T 1ofh_A 185 LIPELQGRLPIRVELTALS 203 (310)
T ss_dssp SCHHHHHTCCEEEECCCCC
T ss_pred CCHHHHhhCCceEEcCCcC
Confidence 88999999975 7777654
No 16
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.21 E-value=0.00028 Score=59.91 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=22.8
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
...+++.||+|+|||++++.++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 356889999999999999998887653
No 17
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.14 E-value=0.0024 Score=56.00 Aligned_cols=150 Identities=13% Similarity=0.071 Sum_probs=76.0
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
+.+++.||+|+|||++.+.+++.+..-..... ...........+.. ....++++ ++...... ...+..+++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 120 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TPCGVCDNCREIEQ--GRFVDLIE-IDAASRTK-VEDTRDLLDNVQY 120 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS-SCCSCSHHHHHHHT--TCCSSEEE-EETTCGGG-HHHHHHHHHSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CCCcccHHHHHHhc--cCCcceEE-ecCccccc-HHHHHHHHHHhhh
Confidence 35788999999999999988876642110000 00000000000000 00111221 11111111 1123334443322
Q ss_pred C-CCCCceEEEEcCC--CChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccCC
Q psy4734 263 S-TTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCI 339 (367)
Q Consensus 263 ~-~~~~~~wivfDG~--~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~~ 339 (367)
. ....+..+|+|.. ++....+.|-..+++ .++++.+|+-+.+.....|+..+||-.+.+.+-.-
T Consensus 121 ~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~-------------~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~ 187 (250)
T 1njg_A 121 APARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 187 (250)
T ss_dssp SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS-------------CCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCH
T ss_pred chhcCCceEEEEECcccccHHHHHHHHHHHhc-------------CCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCH
Confidence 2 2334689999943 455555555555543 14566778877777778889999999999887532
Q ss_pred -chHHHHHHHHH
Q psy4734 340 -SWTTFFLSYQN 350 (367)
Q Consensus 340 -~~~~~~~swl~ 350 (367)
....++...+.
T Consensus 188 ~e~~~~l~~~~~ 199 (250)
T 1njg_A 188 EQIRHQLEHILN 199 (250)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 23444444443
No 18
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.12 E-value=0.0012 Score=62.99 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.2
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
++++|.||||+|||++.+.++..+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999888764
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.09 E-value=0.0021 Score=59.56 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=69.1
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHh-c
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA-V 262 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~-~ 262 (367)
.++|.||+|+|||++.+.+++.+..-.. ...+..+|+.... | . .. +...++... .
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~---------~~~~~~~~~~~~~-----~-~----~~-----~~~~~~~~~~~ 95 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENW---------RDNFIEMNASDER-----G-I----DV-----VRHKIKEFART 95 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCH---------HHHCEEEETTSTT-----C-T----TT-----SSHHHHHHHHS
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcc---------cCCeEEEeCcccc-----C-h----HH-----HHHHHHHHHhc
Confidence 3889999999999999999887632110 0111223433211 1 0 01 111222222 1
Q ss_pred --CCCCCceEEEEcCC--CChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccC
Q psy4734 263 --STTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKC 338 (367)
Q Consensus 263 --~~~~~~~wivfDG~--~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~ 338 (367)
.....++.+++|.. +...-.+.|..++++ .++++.+|+-+++.....|+..|||..+.+.+-.
T Consensus 96 ~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~ 162 (319)
T 2chq_A 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEM-------------YSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (319)
T ss_dssp CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-------------SSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCC
T ss_pred CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-------------cCCCCeEEEEeCChhhcchHHHhhCeEEEecCCC
Confidence 12345789999931 233333444444433 2456778888888888889999999999997654
No 20
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.03 E-value=0.0025 Score=64.84 Aligned_cols=135 Identities=17% Similarity=0.130 Sum_probs=68.2
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC-ccccccceecccccccccchHHHHHHHHhc
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~-t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
.++|+||||+||||+.+.++..+.. ....++...+ ...+++|....- -....|-+...+..+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~--------------~~~~i~~~~~~~~~~~~g~~~~~-ig~~~~~~~~~~~~a-- 172 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGR--------------KFVRISLGGVRDESEIRGHRRTY-VGAMPGRIIQGMKKA-- 172 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTC--------------EEEEECCCC---------------------CHHHHHHTT--
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC--------------CeEEEEecccchhhhhhhHHHHH-hccCchHHHHHHHHh--
Confidence 4788999999999999998877621 1223444332 234455432110 011222233333332
Q ss_pred CCCCCceEEEEcCCCChH-------hhhhhhhccCCCCceee-cccceeecC-CCCeEEEecCCCCccCcchhhceeeEE
Q psy4734 263 STTPDRKWIMFDGPIDAV-------WIENMNTVLDDNKKLCL-INGEIIKMS-NTMNLIFECENLEFASPATVSRVGMIY 333 (367)
Q Consensus 263 ~~~~~~~wivfDG~~d~~-------wie~lnsvlddn~~l~L-~~ge~i~l~-~~~~~ifE~~~l~~asPatvsRcg~v~ 333 (367)
....-.+++| .+|.. -.+.|-.+||+...-.+ ..+....+. .++.+|.-+.......|+..+||-+++
T Consensus 173 --~~~~~vl~lD-Eid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~ 249 (543)
T 3m6a_A 173 --GKLNPVFLLD-EIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIIN 249 (543)
T ss_dssp --CSSSEEEEEE-ESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEE
T ss_pred --hccCCEEEEh-hhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceee
Confidence 1222377778 33322 12455566665322111 122222222 567788777778889999999999998
Q ss_pred ecccC
Q psy4734 334 FELKC 338 (367)
Q Consensus 334 ~~~~~ 338 (367)
+.+-.
T Consensus 250 ~~~~~ 254 (543)
T 3m6a_A 250 IAGYT 254 (543)
T ss_dssp CCCCC
T ss_pred eCCCC
Confidence 87643
No 21
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.0034 Score=58.38 Aligned_cols=127 Identities=18% Similarity=0.189 Sum_probs=71.8
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhcC
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 263 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~ 263 (367)
.++|.||+|+|||++.+.+++.+..-.. ...+..+++.... | .+- +...+++....
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~---------~~~~~~~~~~~~~-----~---------~~~-~~~~~~~~~~~ 103 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENW---------RHNFLELNASDER-----G---------INV-IREKVKEFART 103 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGH---------HHHEEEEETTCHH-----H---------HHT-THHHHHHHHHS
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcc---------cCceEEeeccccC-----c---------hHH-HHHHHHHHHhh
Confidence 3889999999999999999887642211 0112233433210 0 011 11122222211
Q ss_pred ---CCCCceEEEEcCC--CChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccC
Q psy4734 264 ---TTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKC 338 (367)
Q Consensus 264 ---~~~~~~wivfDG~--~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~ 338 (367)
....++.+|+|.. ++..-.+.|..++++ .++++++|+-+++.....|+..|||..+.+.+-.
T Consensus 104 ~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~ 170 (327)
T 1iqp_A 104 KPIGGASFKIIFLDEADALTQDAQQALRRTMEM-------------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 170 (327)
T ss_dssp CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH-------------TTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCC
T ss_pred CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh-------------cCCCCeEEEEeCCccccCHHHHhhCcEEEecCCC
Confidence 1145789999931 233334444444432 1456678887777777889999999999988743
Q ss_pred CchHHHHHHHHH
Q psy4734 339 ISWTTFFLSYQN 350 (367)
Q Consensus 339 ~~~~~~~~swl~ 350 (367)
..-+..|+.
T Consensus 171 ---~~~~~~~l~ 179 (327)
T 1iqp_A 171 ---DEDIAKRLR 179 (327)
T ss_dssp ---HHHHHHHHH
T ss_pred ---HHHHHHHHH
Confidence 233344554
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.0021 Score=60.73 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=69.5
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHH---
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM--- 260 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~--- 260 (367)
.+++.||+|+|||++.+.++..+..-... .+.+..++|...... ..+.+- +..+....
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~--------~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~ 120 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLM--------KSRILELNASDERGI----------SIVREK-VKNFARLTVSK 120 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHH--------TTSEEEECSSSCCCH----------HHHTTH-HHHHHHSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc--------ccceEEEccccccch----------HHHHHH-HHHHhhhcccc
Confidence 38899999999999999999887532111 122334566543110 011110 10110000
Q ss_pred ------hcCCCCCceEEEEcC--CCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeE
Q psy4734 261 ------AVSTTPDRKWIMFDG--PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMI 332 (367)
Q Consensus 261 ------~~~~~~~~~wivfDG--~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v 332 (367)
........+.+++|- .+++...+.|..++++. +.+.++|+-+++.....|+..+||..+
T Consensus 121 ~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 121 PSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY-------------SGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp CCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred cchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc-------------CCCceEEEEeCchhhCcchhhccCceE
Confidence 011223557999993 23333444444444432 245667777777778889999999988
Q ss_pred EecccC
Q psy4734 333 YFELKC 338 (367)
Q Consensus 333 ~~~~~~ 338 (367)
.+.+-.
T Consensus 188 ~~~~~~ 193 (353)
T 1sxj_D 188 RFKALD 193 (353)
T ss_dssp ECCCCC
T ss_pred EeCCCC
Confidence 887643
No 23
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.97 E-value=0.001 Score=67.08 Aligned_cols=140 Identities=10% Similarity=0.182 Sum_probs=76.0
Q ss_pred HHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHH
Q psy4734 178 IFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTF 257 (367)
Q Consensus 178 ~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~ 257 (367)
.......+++.||||+|||++.+.++..+.. .. ....++....+..+++|.++... .-..|.+..
T Consensus 37 al~~~~~VLL~GpPGtGKT~LAraLa~~l~~----------~~--~f~~~~~~~~t~~dL~G~~~~~~-~~~~g~~~~-- 101 (500)
T 3nbx_X 37 AALSGESVFLLGPPGIAKSLIARRLKFAFQN----------AR--AFEYLMTRFSTPEEVFGPLSIQA-LKDEGRYER-- 101 (500)
T ss_dssp HHHHTCEEEEECCSSSSHHHHHHHGGGGBSS----------CC--EEEEECCTTCCHHHHHCCBC-----------CB--
T ss_pred HHhcCCeeEeecCchHHHHHHHHHHHHHHhh----------hh--HHHHHHHhcCCHHHhcCcccHHH-HhhchhHHh--
Confidence 3455678999999999999998887764411 01 12233444446688888653211 001111100
Q ss_pred HHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCc---cCcchhhceee-
Q psy4734 258 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEF---ASPATVSRVGM- 331 (367)
Q Consensus 258 r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~---asPatvsRcg~- 331 (367)
+....-....++++| +..++.-...|-.++++. .++. .|....++..+ +|+-+..+.. ..+|..+|..+
T Consensus 102 --~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~-~v~i-~G~~~~~~~~~-iI~ATN~lpe~~~~~~aLldRF~~~ 176 (500)
T 3nbx_X 102 --LTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINER-QFRN-GAHVEKIPMRL-LVAASNELPEADSSLEALYDRMLIR 176 (500)
T ss_dssp --CCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSS-EEEC-SSSEEECCCCE-EEEEESSCCCTTCTTHHHHTTCCEE
T ss_pred --hhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHH-hccC-CCCcCCcchhh-hhhccccCCCccccHHHHHHHHHHH
Confidence 000000124689999 334555555666666554 3344 56666666553 4666654433 33589999866
Q ss_pred EEeccc
Q psy4734 332 IYFELK 337 (367)
Q Consensus 332 v~~~~~ 337 (367)
+++++.
T Consensus 177 i~v~~p 182 (500)
T 3nbx_X 177 LWLDKV 182 (500)
T ss_dssp EECCSC
T ss_pred HHHHHh
Confidence 566543
No 24
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.97 E-value=0.0039 Score=57.88 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=72.4
Q ss_pred heeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc--
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV-- 262 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~-- 262 (367)
++|.||+|+|||++.+.+++.+..-.. ...+..+++.... | -+.+...++....
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~---------~~~~~~~~~~~~~-----~----------~~~i~~~~~~~~~~~ 100 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSY---------ADGVLELNASDDR-----G----------IDVVRNQIKHFAQKK 100 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGH---------HHHEEEECTTSCC-----S----------HHHHHTHHHHHHHBC
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcc---------cCCEEEecCcccc-----C----------hHHHHHHHHHHHhcc
Confidence 889999999999999999887642111 1112334433210 0 0112223333321
Q ss_pred -CC-CCCceEEEEcCCCC---hHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEeccc
Q psy4734 263 -ST-TPDRKWIMFDGPID---AVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELK 337 (367)
Q Consensus 263 -~~-~~~~~wivfDG~~d---~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~ 337 (367)
.- ...++.+|+|. +| ..-.+.|...+++ .+++..+|+-+.+.....|+..|||..+.+.+-
T Consensus 101 ~~~~~~~~~viiiDe-~~~l~~~~~~~L~~~le~-------------~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~ 166 (323)
T 1sxj_B 101 LHLPPGKHKIVILDE-ADSMTAGAQQALRRTMEL-------------YSNSTRFAFACNQSNKIIEPLQSQCAILRYSKL 166 (323)
T ss_dssp CCCCTTCCEEEEEES-GGGSCHHHHHTTHHHHHH-------------TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred ccCCCCCceEEEEEC-cccCCHHHHHHHHHHHhc-------------cCCCceEEEEeCChhhchhHHHhhceEEeecCC
Confidence 11 23478999993 33 2333333333332 245677888787778888999999999999875
Q ss_pred CCchHHHHHHHHHH
Q psy4734 338 CISWTTFFLSYQNE 351 (367)
Q Consensus 338 ~~~~~~~~~swl~~ 351 (367)
.- .-+..|+..
T Consensus 167 ~~---~~~~~~l~~ 177 (323)
T 1sxj_B 167 SD---EDVLKRLLQ 177 (323)
T ss_dssp CH---HHHHHHHHH
T ss_pred CH---HHHHHHHHH
Confidence 42 333445543
No 25
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.97 E-value=0.00046 Score=71.06 Aligned_cols=126 Identities=13% Similarity=0.166 Sum_probs=78.7
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCcccccccee--ccccc--ccccchHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEF--DSASH--EWRDGILAKTFRE 259 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~--d~~~~--~W~dGil~~~~r~ 259 (367)
.++++||||+|||++++.+++.+.. ..+. .....+...+.|.. +..++ .+..|.+..+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r--------------~~~~-~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A--- 390 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPR--------------AVYT-TGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA--- 390 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSC--------------EECC-CTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---
T ss_pred ceEEECCCchHHHHHHHHHHHhCCC--------------ceec-CCCccccccccceeeeccccccccccCCeeEec---
Confidence 5899999999999998876654311 0010 11112333444433 12223 3456665433
Q ss_pred HhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCC-------------ccCcc
Q psy4734 260 MAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-------------FASPA 324 (367)
Q Consensus 260 ~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~-------------~asPa 324 (367)
+...+++| +.+++.-...|..+|++...-....|....++..+++|.-+.... ..+||
T Consensus 391 -------~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~a 463 (595)
T 3f9v_A 391 -------DGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPT 463 (595)
T ss_dssp -------SSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSS
T ss_pred -------CCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHH
Confidence 12477788 334555667777788766554446688888998988887776554 78999
Q ss_pred hhhceeeEEe
Q psy4734 325 TVSRVGMIYF 334 (367)
Q Consensus 325 tvsRcg~v~~ 334 (367)
..+|+.++++
T Consensus 464 Ll~RFDl~~~ 473 (595)
T 3f9v_A 464 ILSRFDLIFI 473 (595)
T ss_dssp SGGGCSCCEE
T ss_pred HHhhCeEEEE
Confidence 9999976554
No 26
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.95 E-value=0.0026 Score=60.30 Aligned_cols=70 Identities=10% Similarity=0.147 Sum_probs=45.7
Q ss_pred CCceEEEEcCC--CChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccCCchHH
Q psy4734 266 PDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTT 343 (367)
Q Consensus 266 ~~~~wivfDG~--~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~~~~~~ 343 (367)
..++.+++|-+ +|+.-.+.|-..+.+ .+++..+|+=+++....-|+..|||-.+.+.+-.. .
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~-------------~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~---~ 196 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEK-------------YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSD---S 196 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHH-------------STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCH---H
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHh-------------hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCH---H
Confidence 36789999954 344444444433322 23467788888888889999999998888876542 3
Q ss_pred HHHHHHHH
Q psy4734 344 FFLSYQNE 351 (367)
Q Consensus 344 ~~~swl~~ 351 (367)
-+..|+..
T Consensus 197 ~~~~~l~~ 204 (354)
T 1sxj_E 197 EISTILSD 204 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34455544
No 27
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.90 E-value=0.0011 Score=70.13 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=80.1
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhcC
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS 263 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~ 263 (367)
.++|.||||+|||++.+.++..+..- +.+ ...+|... +.+.... ..|.++.++|+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~---------~~~--~i~i~~s~-----~~~~~~~-----~~~~l~~~~~~~--- 578 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD---------EES--MIRIDMSE-----YMEKHST-----SGGQLTEKVRRK--- 578 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC---------TTC--EEEEEGGG-----GCSSCCC-----C---CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC---------Ccc--eEEEechh-----ccccccc-----ccchhhHHHHhC---
Confidence 48899999999999999998876311 112 22333322 2222111 156667777653
Q ss_pred CCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCC------------CccCcchhhce
Q psy4734 264 TTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL------------EFASPATVSRV 329 (367)
Q Consensus 264 ~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l------------~~asPatvsRc 329 (367)
....++|| +..++.....|..+||+. .++...|..+. ..++++|+-+..- ....|+..+||
T Consensus 579 ---~~~vl~lDEi~~~~~~~~~~Ll~~le~g-~~~~~~g~~~~-~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl 653 (758)
T 3pxi_A 579 ---PYSVVLLDAIEKAHPDVFNILLQVLEDG-RLTDSKGRTVD-FRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRI 653 (758)
T ss_dssp ---SSSEEEEECGGGSCHHHHHHHHHHHHHS-BCC-----CCB-CTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTS
T ss_pred ---CCeEEEEeCccccCHHHHHHHHHHhccC-eEEcCCCCEec-cCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhC
Confidence 34589999 456777778888888874 45555565444 4567777766521 12679999999
Q ss_pred -eeEEecccCC-chHHHHHHHHHHh
Q psy4734 330 -GMIYFELKCI-SWTTFFLSYQNEL 352 (367)
Q Consensus 330 -g~v~~~~~~~-~~~~~~~swl~~~ 352 (367)
.+|++.|-.- .-..++...+..+
T Consensus 654 ~~~i~~~~l~~~~~~~i~~~~l~~~ 678 (758)
T 3pxi_A 654 DEIIVFHSLEKKHLTEIVSLMSDQL 678 (758)
T ss_dssp SEEEECC--CHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCHHHHHHHHHHHHHHH
Confidence 6777776532 1333444444443
No 28
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.88 E-value=0.0014 Score=62.73 Aligned_cols=144 Identities=15% Similarity=0.228 Sum_probs=72.1
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccc-eeEEEEeCCCCCc----------cccccceeccccccc-cc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEF-KTGYKIINPKSIT----------MGQLYGEFDSASHEW-RD 250 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~-~v~~~~inpka~t----------~~~l~G~~d~~~~~W-~d 250 (367)
+.+++.||+|+|||++.+.++..+........ .. ......+|+.... ..++.|.--+ .... ..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~ 120 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDE----EYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVP-KHGINLG 120 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSS----SSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCC-SSSSCTH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhc----CCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCC-CCCCCHH
Confidence 45889999999999999998877654321000 00 1223334432221 2222222111 1111 12
Q ss_pred chHHHHHHHHhcCCCCCceEEEEcCCCChHh----hhh-hhhccCCCCceeecccceeecCCCCeEEEecCCC---CccC
Q psy4734 251 GILAKTFREMAVSTTPDRKWIMFDGPIDAVW----IEN-MNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL---EFAS 322 (367)
Q Consensus 251 Gil~~~~r~~~~~~~~~~~wivfDG~~d~~w----ie~-lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l---~~as 322 (367)
.++..+..... ..+..||+| ++|..- .+. +..++... .++.+|+=+.+. ....
T Consensus 121 ~~~~~l~~~l~----~~~~vlilD-Ei~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~~~~l~ 181 (384)
T 2qby_B 121 EYIDKIKNGTR----NIRAIIYLD-EVDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINVRDYME 181 (384)
T ss_dssp HHHHHHHHHHS----SSCEEEEEE-TTHHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTTTTTSC
T ss_pred HHHHHHHHHhc----cCCCEEEEE-CHHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCchHhhhC
Confidence 23333333331 112288999 444332 222 33333221 566677766665 5678
Q ss_pred cchhhc-eeeEEecccCC-chHHHHHHHHH
Q psy4734 323 PATVSR-VGMIYFELKCI-SWTTFFLSYQN 350 (367)
Q Consensus 323 PatvsR-cg~v~~~~~~~-~~~~~~~swl~ 350 (367)
|+..+| |..+++.+-.. ....++...+.
T Consensus 182 ~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 182 PRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp HHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 888999 46777776532 23444444443
No 29
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.88 E-value=0.0021 Score=64.10 Aligned_cols=121 Identities=19% Similarity=0.186 Sum_probs=62.7
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHh
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 261 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~ 261 (367)
...++|+||||+|||++.+.++..+..-.. +.......+..++.. ...-| ++. ..+..++..+.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~~~~----p~~l~~~~~~~l~~~----~~~~g-------~~e-~~~~~~~~~~~ 264 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMG----TKYRG-------EFE-DRLKKVMDEIR 264 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCS----CTTTSSCCEECC---------------------C-TTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhCCC----ChhhcCCeEEEeeCC----ccccc-------hHH-HHHHHHHHHHH
Confidence 356889999999999999999887643110 000001122222222 11112 222 22344555443
Q ss_pred cCCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCC-----ccCcchhhceeeEEecc
Q psy4734 262 VSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-----FASPATVSRVGMIYFEL 336 (367)
Q Consensus 262 ~~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~-----~asPatvsRcg~v~~~~ 336 (367)
. ..+..+++||..|.. ..|..+|. .| .+++|.-++.-. ...|+..+||..|++++
T Consensus 265 ~---~~~~iLfiD~~~~a~--~~L~~~L~--------~g-------~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~ 324 (468)
T 3pxg_A 265 Q---AGNIILFIDAAIDAS--NILKPSLA--------RG-------ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQ 324 (468)
T ss_dssp T---CCCCEEEECC----------CCCTT--------SS-------SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCC
T ss_pred h---cCCeEEEEeCchhHH--HHHHHhhc--------CC-------CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCC
Confidence 2 245688889665532 22333332 22 466777766554 46799999999999986
Q ss_pred cC
Q psy4734 337 KC 338 (367)
Q Consensus 337 ~~ 338 (367)
-.
T Consensus 325 p~ 326 (468)
T 3pxg_A 325 PS 326 (468)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 30
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.87 E-value=0.00059 Score=62.29 Aligned_cols=151 Identities=11% Similarity=0.121 Sum_probs=82.8
Q ss_pred HhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceecc---cccccccc
Q psy4734 179 FEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDS---ASHEWRDG 251 (367)
Q Consensus 179 ~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~---~~~~W~dG 251 (367)
......+++.||+|+|||++.+.++...... ......+|..+++ ..++||.... .......|
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~ 94 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYLSSRW-----------QGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPG 94 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-----------TSCEEEEEGGGSCHHHHHHHHHCCC---------CCCC
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-----------CCCeEEEecCCCChhHHHHHhcCCcccccccccccccc
Confidence 3455789999999999999988877543211 1123345655553 2345664211 00112334
Q ss_pred hHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCC-------CccC
Q psy4734 252 ILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL-------EFAS 322 (367)
Q Consensus 252 il~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l-------~~as 322 (367)
.+.. + ....+++| +.++..-.+.|..++++.... ..|+....+.++++|+-++.- ....
T Consensus 95 ~l~~----a------~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~ 162 (265)
T 2bjv_A 95 RFER----A------DGGTLFLDELATAPMMVQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATNADLPAMVNEGTFR 162 (265)
T ss_dssp HHHH----T------TTSEEEEESGGGSCHHHHHHHHHHHHHCEEC--CCCC--CEECCCEEEEEESSCHHHHHHHTSSC
T ss_pred hhhh----c------CCcEEEEechHhcCHHHHHHHHHHHHhCCee--cCCCcccccCCeEEEEecCcCHHHHHHcCCcc
Confidence 4322 1 23588999 344555556666667654332 234444456678888876642 1356
Q ss_pred cchhhceeeEEecccCCc-----hHHHHHHHHHHh
Q psy4734 323 PATVSRVGMIYFELKCIS-----WTTFFLSYQNEL 352 (367)
Q Consensus 323 PatvsRcg~v~~~~~~~~-----~~~~~~swl~~~ 352 (367)
|+..+|+..+.+.-..+. -..++..+++..
T Consensus 163 ~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~ 197 (265)
T 2bjv_A 163 ADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQM 197 (265)
T ss_dssp HHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHH
Confidence 899999975444332222 334556666543
No 31
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.83 E-value=0.0024 Score=68.43 Aligned_cols=148 Identities=20% Similarity=0.250 Sum_probs=83.2
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC----ccccccceeccccccccc-chHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI----TMGQLYGEFDSASHEWRD-GILAKTF 257 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~----t~~~l~G~~d~~~~~W~d-Gil~~~~ 257 (367)
..++|.||+|+|||++.+.++..+..-. .+ ...+|...+ ...+++|.. +.-..+.. |.++..+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~---------~~--~i~i~~~~~~~~~~~s~l~g~~-~~~~G~~~~g~l~~~~ 656 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTE---------EA--MIRIDMTEYMEKHAVSRLIGAP-PGYVGYEEGGQLTEAV 656 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSG---------GG--EEEECTTTCCSSGGGGGC---------------CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCC---------Cc--EEEEechhccchhHHHHHcCCC-CCCcCccccchHHHHH
Confidence 3588999999999999999888764211 11 233554443 356677642 11123333 7787777
Q ss_pred HHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCC-----------------
Q psy4734 258 REMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL----------------- 318 (367)
Q Consensus 258 r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l----------------- 318 (367)
++. ....++|| +.+++.....|..+||+.+ ++-+.|..+.+. ++.+|+ ++|.
T Consensus 657 ~~~------~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~-~~~~~g~~vd~~-~~iiI~-tsn~~~~~~~~~~~~~~~~~~ 727 (854)
T 1qvr_A 657 RRR------PYSVILFDEIEKAHPDVFNILLQILDDGR-LTDSHGRTVDFR-NTVIIL-TSNLGSPLILEGLQKGWPYER 727 (854)
T ss_dssp HHC------SSEEEEESSGGGSCHHHHHHHHHHHTTTE-ECCSSSCCEECT-TEEEEE-ECCTTHHHHHHHHHTTCCHHH
T ss_pred HhC------CCeEEEEecccccCHHHHHHHHHHhccCc-eECCCCCEeccC-CeEEEE-ecCcChHHHhhhcccccchHH
Confidence 753 24689999 4466777777778887754 444555555542 333554 3343
Q ss_pred ----------CccCcchhhce-eeEEecccCC-chHHHHHHHHHH
Q psy4734 319 ----------EFASPATVSRV-GMIYFELKCI-SWTTFFLSYQNE 351 (367)
Q Consensus 319 ----------~~asPatvsRc-g~v~~~~~~~-~~~~~~~swl~~ 351 (367)
....|+..+|| .++.+.|-.- .-..++...++.
T Consensus 728 l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~ 772 (854)
T 1qvr_A 728 IRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSY 772 (854)
T ss_dssp HHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence 24579999999 5556655321 123344444443
No 32
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.83 E-value=0.0024 Score=63.34 Aligned_cols=123 Identities=13% Similarity=0.135 Sum_probs=65.1
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
++++|.||||+|||++.+.++..++ .....++......++ ..+++..+.....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~--------------~~f~~l~a~~~~~~~------------ir~~~~~a~~~~~- 103 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN--------------ADVERISAVTSGVKE------------IREAIERARQNRN- 103 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT--------------CEEEEEETTTCCHHH------------HHHHHHHHHHHHH-
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC--------------CCeEEEEeccCCHHH------------HHHHHHHHHHhhh-
Confidence 4689999999999999999887642 112223322111111 1122222222211
Q ss_pred CCCCCceEEEEcCCCChH---hhhhhhhccCCCCceeecccceeecCCCCeEEEecCC-C-CccCcchhhceeeEEeccc
Q psy4734 263 STTPDRKWIMFDGPIDAV---WIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-L-EFASPATVSRVGMIYFELK 337 (367)
Q Consensus 263 ~~~~~~~wivfDG~~d~~---wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~-l-~~asPatvsRcg~v~~~~~ 337 (367)
......+++| ++|.. -.+.|..++++ ..+.+|+.++. . ....|+..|||.++.+.+-
T Consensus 104 --~~~~~iLfID-EI~~l~~~~q~~LL~~le~---------------~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l 165 (447)
T 3pvs_A 104 --AGRRTILFVD-EVHRFNKSQQDAFLPHIED---------------GTITFIGATTENPSFELNSALLSRARVYLLKSL 165 (447)
T ss_dssp --TTCCEEEEEE-TTTCC------CCHHHHHT---------------TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCC
T ss_pred --cCCCcEEEEe-ChhhhCHHHHHHHHHHHhc---------------CceEEEecCCCCcccccCHHHhCceeEEeeCCc
Confidence 2346788999 33322 22333333332 23556666543 2 3567999999999998765
Q ss_pred CC-chHHHHHHHHH
Q psy4734 338 CI-SWTTFFLSYQN 350 (367)
Q Consensus 338 ~~-~~~~~~~swl~ 350 (367)
.- ....++...+.
T Consensus 166 ~~edi~~il~~~l~ 179 (447)
T 3pvs_A 166 STEDIEQVLTQAME 179 (447)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 42 13334444443
No 33
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.81 E-value=0.007 Score=57.47 Aligned_cols=147 Identities=13% Similarity=0.069 Sum_probs=74.9
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
|.++|.||+|+|||++.+.+++.+........ ..-........+.. -...++++ ++.......+ .+..++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~-~~~~l~~~~~~ 113 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TPCGVCDNCREIEQ--GRFVDLIE-IDAASRTKVE-DTRDLLDNVQY 113 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-SCCSSSHHHHHHHT--SCCSSCEE-EETTCSCCSS-CHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-CCCcccHHHHHHhc--cCCCceEE-ecccccCCHH-HHHHHHHHHhh
Confidence 45789999999999999999877642110000 00000000000000 00011111 1221111111 23344444433
Q ss_pred CC-CCCceEEEEcCC--CChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccCC
Q psy4734 263 ST-TPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCI 339 (367)
Q Consensus 263 ~~-~~~~~wivfDG~--~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~~ 339 (367)
.. ...++.+|+|.- ++..-.+.|-..+++ .++++.+|+-+++.....|+..|||..+.+.+-.
T Consensus 114 ~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-------------~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~- 179 (373)
T 1jr3_A 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD- 179 (373)
T ss_dssp CCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-------------CCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCC-
T ss_pred ccccCCeEEEEEECcchhcHHHHHHHHHHHhc-------------CCCceEEEEEeCChHhCcHHHHhheeEeeCCCCC-
Confidence 22 345689999931 233333334333332 3556778888888888889999999999988654
Q ss_pred chHHHHHHHHH
Q psy4734 340 SWTTFFLSYQN 350 (367)
Q Consensus 340 ~~~~~~~swl~ 350 (367)
..-+..|+.
T Consensus 180 --~~~~~~~l~ 188 (373)
T 1jr3_A 180 --VEQIRHQLE 188 (373)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 233445554
No 34
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.81 E-value=0.00092 Score=61.49 Aligned_cols=134 Identities=15% Similarity=0.184 Sum_probs=71.4
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 260 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~ 260 (367)
...+++|.||+|+|||++.+.++..++ .....+++ .++++.+-.. ..+.+..++..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~--------------~~~~~v~~-----~~~~~~~~~~----~~~~~~~~~~~~ 106 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN--------------ATFIRVVG-----SELVKKFIGE----GASLVKDIFKLA 106 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT--------------CEEEEEEG-----GGGCCCSTTH----HHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC--------------CCEEEEeh-----HHHHHhccch----HHHHHHHHHHHH
Confidence 456799999999999999998876541 12222322 2333322111 112233333333
Q ss_pred hcCCCCCceEEEEcCCCChH--------------hhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchh
Q psy4734 261 AVSTTPDRKWIMFDGPIDAV--------------WIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 326 (367)
Q Consensus 261 ~~~~~~~~~wivfDG~~d~~--------------wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatv 326 (367)
.. ..+..+++| ++|.. ..+.+..+++. .+.+..+.++.+|.-+.......|+..
T Consensus 107 ~~---~~~~vl~iD-Eid~l~~~~~~~~~~~~~~~~~~l~~ll~~--------~~~~~~~~~~~vI~ttn~~~~l~~~l~ 174 (285)
T 3h4m_A 107 KE---KAPSIIFID-EIDAIAAKRTDALTGGDREVQRTLMQLLAE--------MDGFDARGDVKIIGATNRPDILDPAIL 174 (285)
T ss_dssp HH---TCSEEEEEE-TTHHHHBCCSSSCCGGGGHHHHHHHHHHHH--------HHTTCSSSSEEEEEECSCGGGBCHHHH
T ss_pred HH---cCCeEEEEE-CHHHhcccCccccCCccHHHHHHHHHHHHH--------hhCCCCCCCEEEEEeCCCchhcCHHHc
Confidence 22 235789999 55433 23334433321 011122345667777777777888988
Q ss_pred h--cee-eEEecccCC-chHHHHHHHH
Q psy4734 327 S--RVG-MIYFELKCI-SWTTFFLSYQ 349 (367)
Q Consensus 327 s--Rcg-~v~~~~~~~-~~~~~~~swl 349 (367)
+ |+. .+++.+-+. ....++...+
T Consensus 175 ~~~Rf~~~i~~~~p~~~~r~~il~~~~ 201 (285)
T 3h4m_A 175 RPGRFDRIIEVPAPDEKGRLEILKIHT 201 (285)
T ss_dssp STTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCcCCeEEEECCCCHHHHHHHHHHHH
Confidence 8 887 455654432 2334444443
No 35
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.79 E-value=0.00075 Score=65.51 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=70.0
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHh
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 261 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~ 261 (367)
.++++|.||+|+|||++.+.++..++ ..+..+++..+. +.+.|.. .+.+..+++.+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~--------------~~~~~v~~~~l~-~~~~g~~--------~~~~~~~~~~a~ 204 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN--------------ATFFNISAASLT-SKYVGEG--------EKLVRALFAVAR 204 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT--------------CEEEEECSCCC--------C--------HHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc--------------CcEEEeeHHHhh-ccccchH--------HHHHHHHHHHHH
Confidence 46899999999999999988865431 234456665443 1222221 123334444432
Q ss_pred cCCCCCceEEEEcCCCChHhhhh-------hhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhcee-eEE
Q psy4734 262 VSTTPDRKWIMFDGPIDAVWIEN-------MNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVG-MIY 333 (367)
Q Consensus 262 ~~~~~~~~wivfDG~~d~~wie~-------lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg-~v~ 333 (367)
. ..+..|++| ++|...... ...++ +..+..-.|-.-..+..+.+|.-+.....+.|+..+||. .++
T Consensus 205 ~---~~~~il~iD-Eid~l~~~~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~ 278 (389)
T 3vfd_A 205 E---LQPSIIFID-QVDSLLCERREGEHDASRRLK--TEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVY 278 (389)
T ss_dssp H---SSSEEEEEE-TGGGGC--------CTHHHHH--HHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEE
T ss_pred h---cCCeEEEEE-CchhhcccCCCccchHHHHHH--HHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEE
Confidence 2 234688888 554331110 00000 001111111111223456677777777788999999996 688
Q ss_pred ecccCCc-hHHHHHHHH
Q psy4734 334 FELKCIS-WTTFFLSYQ 349 (367)
Q Consensus 334 ~~~~~~~-~~~~~~swl 349 (367)
+..-+.. -..++...+
T Consensus 279 i~~p~~~~r~~il~~~~ 295 (389)
T 3vfd_A 279 VSLPNEETRLLLLKNLL 295 (389)
T ss_dssp CCCCCHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 8765432 233444443
No 36
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.76 E-value=0.00067 Score=65.19 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=71.1
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 260 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~ 260 (367)
..++++|.||+|+|||++.+.++..++ .....+++ .++++.+-..+ ...+..++..+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~--------------~~~~~v~~-----~~l~~~~~g~~----~~~~~~~f~~a 139 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN--------------STFFSVSS-----SDLVSKWMGES----EKLVKQLFAMA 139 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT--------------CEEEEEEH-----HHHHSCC---C----HHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC--------------CCEEEeeH-----HHHhhhhcchH----HHHHHHHHHHH
Confidence 356899999999999999998887652 12222332 23332221111 11223333333
Q ss_pred hcCCCCCceEEEEcCCCChHh--------------hhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchh
Q psy4734 261 AVSTTPDRKWIMFDGPIDAVW--------------IENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 326 (367)
Q Consensus 261 ~~~~~~~~~wivfDG~~d~~w--------------ie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatv 326 (367)
. ...+..|++| ++|..- ...|-..+|.- -.-+.++.+|.-+.......|+..
T Consensus 140 ~---~~~~~vl~iD-Eid~l~~~r~~~~~~~~~~~~~~ll~~l~~~----------~~~~~~v~vI~atn~~~~ld~al~ 205 (355)
T 2qp9_X 140 R---ENKPSIIFID-QVDALTGTRGEGESEASRRIKTELLVQMNGV----------GNDSQGVLVLGATNIPWQLDSAIR 205 (355)
T ss_dssp H---HTSSEEEEEE-CGGGGTC------CTHHHHHHHHHHHHHHHC----------C---CCEEEEEEESCGGGSCHHHH
T ss_pred H---HcCCeEEEEe-chHhhcccCCCCcchHHHHHHHHHHHHhhcc----------cccCCCeEEEeecCCcccCCHHHH
Confidence 2 1345789999 444322 12222222210 011345666666766777889999
Q ss_pred hce-eeEEecccCCc-hHHHHHHHHHHh
Q psy4734 327 SRV-GMIYFELKCIS-WTTFFLSYQNEL 352 (367)
Q Consensus 327 sRc-g~v~~~~~~~~-~~~~~~swl~~~ 352 (367)
+|| -.+++...+.. ...++...+...
T Consensus 206 rRf~~~i~i~~P~~~~r~~il~~~l~~~ 233 (355)
T 2qp9_X 206 RRFERRIYIPLPDLAARTTMFEINVGDT 233 (355)
T ss_dssp HTCCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred cccCEEEEeCCcCHHHHHHHHHHHHhhC
Confidence 999 56777755432 344555554443
No 37
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.75 E-value=0.0008 Score=57.01 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.1
Q ss_pred hhhheeccccCCCchhhHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
...+++.||+|+|||++.+.++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999887764
No 38
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.75 E-value=0.0027 Score=67.11 Aligned_cols=121 Identities=19% Similarity=0.183 Sum_probs=64.2
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHh
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 261 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~ 261 (367)
...++|+||||+|||++.+.++..+..-... .......+..++. ....-| ++ .+.+..++..+.
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~~~~~p----~~l~~~~~~~~~~----g~~~~G-------~~-e~~l~~~~~~~~ 264 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVP----EILRDKRVMTLDM----GTKYRG-------EF-EDRLKKVMDEIR 264 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSC----TTTSSCCEECC----------------------CTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHhcCCCC----hhhcCCeEEEecc----cccccc-------hH-HHHHHHHHHHHH
Confidence 3468999999999999999998876431100 0001112222222 011111 22 223445555553
Q ss_pred cCCCCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCC-----ccCcchhhceeeEEecc
Q psy4734 262 VSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE-----FASPATVSRVGMIYFEL 336 (367)
Q Consensus 262 ~~~~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~-----~asPatvsRcg~v~~~~ 336 (367)
. ..+..+++||..|.. ..|..+|+ .| .+++|.-|+.-. ...||..+||..|++++
T Consensus 265 ~---~~~~iLfiD~~~~~~--~~L~~~l~--------~~-------~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~ 324 (758)
T 3pxi_A 265 Q---AGNIILFIDAAIDAS--NILKPSLA--------RG-------ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQ 324 (758)
T ss_dssp T---CCCCEEEECC----------CCCTT--------SS-------SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCC
T ss_pred h---cCCEEEEEcCchhHH--HHHHHHHh--------cC-------CEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCC
Confidence 3 345688889665522 22333332 22 466777776655 57899999999999986
Q ss_pred cC
Q psy4734 337 KC 338 (367)
Q Consensus 337 ~~ 338 (367)
-+
T Consensus 325 p~ 326 (758)
T 3pxi_A 325 PS 326 (758)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 39
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.71 E-value=0.0046 Score=61.18 Aligned_cols=140 Identities=15% Similarity=0.168 Sum_probs=73.9
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 260 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~ 260 (367)
..++++|.||||+|||++.+.++..+. ......+++..+. ..+.|.. ...+..++..+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~-------------~~~~~~v~~~~l~-~~~~g~~--------~~~~~~~f~~a 223 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN-------------NSTFFSISSSDLV-SKWLGES--------EKLVKNLFQLA 223 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC-------------SSEEEEECCC----------C--------CCTHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC-------------CCCEEEEeHHHHH-hhhcchH--------HHHHHHHHHHH
Confidence 347899999999999999998876541 1123345544332 1222221 22334444443
Q ss_pred hcCCCCCceEEEEcCCCChHh-----------hhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhce
Q psy4734 261 AVSTTPDRKWIMFDGPIDAVW-----------IENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRV 329 (367)
Q Consensus 261 ~~~~~~~~~wivfDG~~d~~w-----------ie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRc 329 (367)
.. ..+..|++| ++|... -..++.+| ..-.|- ..-+.++.+|.-+.......||..+||
T Consensus 224 ~~---~~~~vl~iD-Eid~l~~~~~~~~~~~~~~~~~~lL------~~l~~~-~~~~~~v~vI~atn~~~~ld~al~rRf 292 (444)
T 2zan_A 224 RE---NKPSIIFID-EIDSLCGSRSENESEAARRIKTEFL------VQMQGV-GVDNDGILVLGATNIPWVLDSAIRRRF 292 (444)
T ss_dssp HH---SCSEEEEES-CTTTTCCCSSCCCCGGGHHHHHHHH------TTTTCS-SCCCSSCEEEEEESCGGGSCHHHHTTC
T ss_pred HH---cCCeEEEEe-chHhhccCCCCccccHHHHHHHHHH------HHHhCc-ccCCCCEEEEecCCCccccCHHHHhhc
Confidence 22 345788898 444321 11112221 111110 011346667777777778899999999
Q ss_pred e-eEEecccCCc-hHHHHHHHHHHhh
Q psy4734 330 G-MIYFELKCIS-WTTFFLSYQNELK 353 (367)
Q Consensus 330 g-~v~~~~~~~~-~~~~~~swl~~~~ 353 (367)
. .+++...+.. ...++...+...+
T Consensus 293 ~~~i~i~~P~~~~r~~il~~~l~~~~ 318 (444)
T 2zan_A 293 EKRIYIPLPEAHARAAMFRLHLGSTQ 318 (444)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTSC
T ss_pred ceEEEeCCcCHHHHHHHHHHHHhcCC
Confidence 5 7777755432 4445555554433
No 40
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.71 E-value=0.0012 Score=59.62 Aligned_cols=138 Identities=17% Similarity=0.271 Sum_probs=72.3
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 260 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~ 260 (367)
...++++.||+|+|||++.+.++..+. .....+++..+. +.|+.. ....+..+++.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~--------------~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~a 94 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ--------------VPFLAMAGAEFV--EVIGGL-------GAARVRSLFKEA 94 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT--------------CCEEEEETTTTS--SSSTTH-------HHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC--------------CCEEEechHHHH--hhccCh-------hHHHHHHHHHHH
Confidence 456789999999999999998877542 112334443321 122211 111233334433
Q ss_pred hcCCCCCceEEEEcCCCChH---------------hhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcch
Q psy4734 261 AVSTTPDRKWIMFDGPIDAV---------------WIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPAT 325 (367)
Q Consensus 261 ~~~~~~~~~wivfDG~~d~~---------------wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPat 325 (367)
.. ..+..+++| ++|.. .-..++.++.. + +.+.-++++.+|.-+.......|+.
T Consensus 95 ~~---~~~~vl~iD-eid~l~~~~~~~~~~~~~~~~~~~l~~ll~~-----~---~~~~~~~~~~vi~~tn~~~~ld~~l 162 (262)
T 2qz4_A 95 RA---RAPCIVYID-EIDAVGKKRSTTMSGFSNTEEEQTLNQLLVE-----M---DGMGTTDHVIVLASTNRADILDGAL 162 (262)
T ss_dssp HH---TCSEEEEEE-CC-------------------CHHHHHHHHH-----H---HTCCTTCCEEEEEEESCGGGGGSGG
T ss_pred Hh---cCCeEEEEe-CcchhhccccccccCccchhHHHHHHHHHHH-----h---hCcCCCCCEEEEecCCChhhcCHHH
Confidence 22 235688888 45432 22233333321 0 0011234566666666666677888
Q ss_pred hh--ce-eeEEecccCC-chHHHHHHHHHHhh
Q psy4734 326 VS--RV-GMIYFELKCI-SWTTFFLSYQNELK 353 (367)
Q Consensus 326 vs--Rc-g~v~~~~~~~-~~~~~~~swl~~~~ 353 (367)
++ |+ -.+++..-+. ....++..++...+
T Consensus 163 ~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~ 194 (262)
T 2qz4_A 163 MRPGRLDRHVFIDLPTLQERREIFEQHLKSLK 194 (262)
T ss_dssp GSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT
T ss_pred hcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC
Confidence 88 88 4666665432 24456666666543
No 41
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.66 E-value=0.0023 Score=65.82 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=45.2
Q ss_pred ceEEEEc--CCCChHhhhhhhhccCCCCceeecccc--------eeecCCCCeEEEecCCC--CccCcchhhcee----e
Q psy4734 268 RKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGE--------IIKMSNTMNLIFECENL--EFASPATVSRVG----M 331 (367)
Q Consensus 268 ~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge--------~i~l~~~~~~ifE~~~l--~~asPatvsRcg----~ 331 (367)
..++++| +.+++.--+.|..+|++...-....++ .-+++.++++|+-++.- ....|+..+||. .
T Consensus 202 ~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~ 281 (604)
T 3k1j_A 202 KGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYE 281 (604)
T ss_dssp TSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHHHHSEE
T ss_pred CCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhhccceE
Confidence 3599999 445666667777777655433332212 33456688898877753 578999999994 4
Q ss_pred EEecc
Q psy4734 332 IYFEL 336 (367)
Q Consensus 332 v~~~~ 336 (367)
+++.+
T Consensus 282 i~l~~ 286 (604)
T 3k1j_A 282 VYMRT 286 (604)
T ss_dssp EECCS
T ss_pred eeccc
Confidence 55543
No 42
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.66 E-value=0.0036 Score=59.23 Aligned_cols=139 Identities=15% Similarity=0.169 Sum_probs=74.0
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHh
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 261 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~ 261 (367)
.++++|.||||+|||++.+.++..+. ......+++..+. ....|. ....+..++..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~-------------~~~~~~i~~~~l~-~~~~g~--------~~~~~~~lf~~a~ 102 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEAN-------------NSTFFSISSSDLV-SKWLGE--------SEKLVKNLFQLAR 102 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT-------------SCEEEEEECCSSC-CSSCCS--------CHHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHcC-------------CCcEEEEEhHHHH-hhhhhH--------HHHHHHHHHHHHH
Confidence 47899999999999999998876541 0123334443332 112221 1223334444332
Q ss_pred cCCCCCceEEEEcCCCChHhh-----------hhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhce-
Q psy4734 262 VSTTPDRKWIMFDGPIDAVWI-----------ENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRV- 329 (367)
Q Consensus 262 ~~~~~~~~wivfDG~~d~~wi-----------e~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRc- 329 (367)
. ..+..|++| ++|..-. ..++.+| ..-.|- ..-+.++.+|.-+.......||..+||
T Consensus 103 ~---~~~~vl~iD-Eid~l~~~~~~~~~~~~~~~~~~ll------~~ld~~-~~~~~~v~vI~atn~~~~ld~al~rRf~ 171 (322)
T 1xwi_A 103 E---NKPSIIFID-EIDSLCGSRSENESEAARRIKTEFL------VQMQGV-GVDNDGILVLGATNIPWVLDSAIRRRFE 171 (322)
T ss_dssp H---TSSEEEEEE-TTTGGGCCSSSCCTTHHHHHHHHHH------HHHHCS-SSCCTTEEEEEEESCTTTSCHHHHHTCC
T ss_pred h---cCCcEEEee-cHHHhccccccccchHHHHHHHHHH------HHHhcc-cccCCCEEEEEecCCcccCCHHHHhhcC
Confidence 2 345789999 5554311 0111111 111110 001345556666766777889999999
Q ss_pred eeEEecccCCc-hHHHHHHHHHHhh
Q psy4734 330 GMIYFELKCIS-WTTFFLSYQNELK 353 (367)
Q Consensus 330 g~v~~~~~~~~-~~~~~~swl~~~~ 353 (367)
-.+++...+.. ...++...+...+
T Consensus 172 ~~i~i~~P~~~~r~~il~~~l~~~~ 196 (322)
T 1xwi_A 172 KRIYIPLPEPHARAAMFKLHLGTTQ 196 (322)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTCC
T ss_pred eEEEeCCcCHHHHHHHHHHHHhcCC
Confidence 56788755432 4445555554443
No 43
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.64 E-value=0.0038 Score=57.67 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.2
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+++++.||+|+|||++.+.++..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 35789999999999999999887654
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.54 E-value=0.0017 Score=60.92 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=68.5
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhc
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAV 262 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~ 262 (367)
+.+++.||+|+|||++.+.+++.++ ..+..+|+.... .+.+...+.+...
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~--------------~~~~~i~~~~~~----------------~~~i~~~~~~~~~ 98 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVN--------------ADMMFVNGSDCK----------------IDFVRGPLTNFAS 98 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTT--------------EEEEEEETTTCC----------------HHHHHTHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhC--------------CCEEEEcccccC----------------HHHHHHHHHHHHh
Confidence 4466778899999999998876652 223345543311 1112222333222
Q ss_pred C--CCCCceEEEEcCCCChH----hhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecc
Q psy4734 263 S--TTPDRKWIMFDGPIDAV----WIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFEL 336 (367)
Q Consensus 263 ~--~~~~~~wivfDG~~d~~----wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~ 336 (367)
. .....+.+++| ++|.. ..+.|..++++ .++++++|+-+.......|+..|||..+.+.+
T Consensus 99 ~~~~~~~~~vliiD-Ei~~l~~~~~~~~L~~~le~-------------~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~ 164 (324)
T 3u61_B 99 AASFDGRQKVIVID-EFDRSGLAESQRHLRSFMEA-------------YSSNCSIIITANNIDGIIKPLQSRCRVITFGQ 164 (324)
T ss_dssp BCCCSSCEEEEEEE-SCCCGGGHHHHHHHHHHHHH-------------HGGGCEEEEEESSGGGSCTTHHHHSEEEECCC
T ss_pred hcccCCCCeEEEEE-CCcccCcHHHHHHHHHHHHh-------------CCCCcEEEEEeCCccccCHHHHhhCcEEEeCC
Confidence 2 12367899999 55543 33444444432 13567788877778888999999999999876
Q ss_pred cC
Q psy4734 337 KC 338 (367)
Q Consensus 337 ~~ 338 (367)
-.
T Consensus 165 ~~ 166 (324)
T 3u61_B 165 PT 166 (324)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 45
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.48 E-value=0.0067 Score=56.89 Aligned_cols=153 Identities=14% Similarity=0.177 Sum_probs=87.6
Q ss_pred HHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceeccc-ccc--cc
Q psy4734 177 KIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDSA-SHE--WR 249 (367)
Q Consensus 177 k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~~-~~~--W~ 249 (367)
+.......+++.|++|+|||++.+.++...... ......+|+.+++ ..+|||..... ++. -.
T Consensus 20 ~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-----------~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~ 88 (304)
T 1ojl_A 20 MVAPSDATVLIHGDSGTGKELVARALHACSARS-----------DRPLVTLNCAALNESLLESELFGHEKGAFTGADKRR 88 (304)
T ss_dssp HHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS-----------SSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCC
T ss_pred HHhCCCCcEEEECCCCchHHHHHHHHHHhCccc-----------CCCeEEEeCCCCChHHHHHHhcCccccccCchhhhh
Confidence 333456779999999999999988876543211 1122346666664 35677753110 111 12
Q ss_pred cchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCC-C------c
Q psy4734 250 DGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL-E------F 320 (367)
Q Consensus 250 dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l-~------~ 320 (367)
.|.+.. + ....+++| +.+...-...|-.+|++..... -|..-..+.++++|+-+..- . .
T Consensus 89 ~g~~~~----a------~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~--~g~~~~~~~~~riI~atn~~l~~~v~~g~ 156 (304)
T 1ojl_A 89 EGRFVE----A------DGGTLFLDEIGDISPLMQVRLLRAIQEREVQR--VGSNQTISVDVRLIAATHRDLAEEVSAGR 156 (304)
T ss_dssp CCHHHH----H------TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCB--TTBCCCCBCCCEEEEEESSCHHHHHHHTS
T ss_pred cCHHHh----c------CCCEEEEeccccCCHHHHHHHHHHHhcCEeee--cCCcccccCCeEEEEecCccHHHHHHhCC
Confidence 343322 2 12469999 4455555666667777654433 34444566788898877642 1 2
Q ss_pred cCcchhhceeeEEecccCCc-----hHHHHHHHHHHh
Q psy4734 321 ASPATVSRVGMIYFELKCIS-----WTTFFLSYQNEL 352 (367)
Q Consensus 321 asPatvsRcg~v~~~~~~~~-----~~~~~~swl~~~ 352 (367)
..|...+|+..+.+.-..+. ...++..++...
T Consensus 157 fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~ 193 (304)
T 1ojl_A 157 FRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRF 193 (304)
T ss_dssp SCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHH
T ss_pred cHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHH
Confidence 45778899866554322222 445666666654
No 46
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.42 E-value=0.0095 Score=56.55 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=76.0
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc-cccccce----ecc--ccccc-ccchH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT-MGQLYGE----FDS--ASHEW-RDGIL 253 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t-~~~l~G~----~d~--~~~~W-~dGil 253 (367)
...+++.||+|+|||++++.++..+....... +..+.+..+|....+ ..+++.. +.. ....+ .+.++
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 118 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSL-----GVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVY 118 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHH-----TCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhcc-----CCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 45688999999999999999887765432110 112344445654432 2222221 110 00111 12223
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCCChHh-----hhhhhhccCCCCceeecccceeecCCCCeEEEecCCC---CccCcch
Q psy4734 254 AKTFREMAVSTTPDRKWIMFDGPIDAVW-----IENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL---EFASPAT 325 (367)
Q Consensus 254 ~~~~r~~~~~~~~~~~wivfDG~~d~~w-----ie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l---~~asPat 325 (367)
..+..... ....+..+++| ++|... -+.|..+++.. +..+.+.++.+|+-+.+. ....|+.
T Consensus 119 ~~l~~~l~--~~~~~~vlilD-Ei~~l~~~~~~~~~l~~l~~~~--------~~~~~~~~~~~I~~t~~~~~~~~l~~~l 187 (387)
T 2v1u_A 119 ERLVKRLS--RLRGIYIIVLD-EIDFLPKRPGGQDLLYRITRIN--------QELGDRVWVSLVGITNSLGFVENLEPRV 187 (387)
T ss_dssp HHHHHHHT--TSCSEEEEEEE-TTTHHHHSTTHHHHHHHHHHGG--------GCC-----CEEEEECSCSTTSSSSCHHH
T ss_pred HHHHHHHh--ccCCeEEEEEc-cHhhhcccCCCChHHHhHhhch--------hhcCCCceEEEEEEECCCchHhhhCHHH
Confidence 33333322 23346789999 555442 23344333211 000113456677766655 6678899
Q ss_pred hhcee--eEEecccCC-chHHHHHHHHH
Q psy4734 326 VSRVG--MIYFELKCI-SWTTFFLSYQN 350 (367)
Q Consensus 326 vsRcg--~v~~~~~~~-~~~~~~~swl~ 350 (367)
.+||+ .+++.+-.. ....++...+.
T Consensus 188 ~~r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 188 KSSLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp HTTTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred HhcCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 99994 567765432 13344444443
No 47
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.41 E-value=0.0081 Score=56.85 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=64.7
Q ss_pred heeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHhcC-
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVS- 263 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~~~- 263 (367)
++|.||+|+||||+++.++..+..-.. .+.+..+|+... .| . + .+-..+......
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~---------~~~~~~~~~~~~-----~~-~--------~-~ir~~i~~~~~~~ 104 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNY---------SNMVLELNASDD-----RG-I--------D-VVRNQIKDFASTR 104 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSH---------HHHEEEECTTSC-----CS-H--------H-HHHTHHHHHHHBC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCc---------cceEEEEcCccc-----cc-H--------H-HHHHHHHHHHhhc
Confidence 788999999999999999988742110 111222343211 01 0 0 011122222211
Q ss_pred --CCCCceEEEEcCCCChH---hhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccC
Q psy4734 264 --TTPDRKWIMFDGPIDAV---WIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKC 338 (367)
Q Consensus 264 --~~~~~~wivfDG~~d~~---wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~ 338 (367)
-....+.+|+|. +|.. -.+.|..++++ .+++.++++-+......-|+..|||..+.+.+-.
T Consensus 105 ~~~~~~~~viiiDe-~~~l~~~~~~~L~~~le~-------------~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~ 170 (340)
T 1sxj_C 105 QIFSKGFKLIILDE-ADAMTNAAQNALRRVIER-------------YTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLP 170 (340)
T ss_dssp CSSSCSCEEEEETT-GGGSCHHHHHHHHHHHHH-------------TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred ccCCCCceEEEEeC-CCCCCHHHHHHHHHHHhc-------------CCCCeEEEEEecCccccchhHHhhceeEeccCCC
Confidence 123478899993 3322 22222222221 2345667777777778889999999988887643
No 48
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.0068 Score=56.99 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=77.0
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccch--HHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI--LAKTFREM 260 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGi--l~~~~r~~ 260 (367)
+..+|.||+|+|||++.+.+++....... ....+..++|..- .-|+ +-.++..+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~--------~~~d~~~l~~~~~----------------~~~id~ir~li~~~ 74 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPP--------KASDVLEIDPEGE----------------NIGIDDIRTIKDFL 74 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCC--------CTTTEEEECCSSS----------------CBCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhc--------cCCCEEEEcCCcC----------------CCCHHHHHHHHHHH
Confidence 46788999999999999998875321100 0112233454310 0111 22344444
Q ss_pred hcCC-CCCceEEEEcCCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhceeeEEecccCC
Q psy4734 261 AVST-TPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCI 339 (367)
Q Consensus 261 ~~~~-~~~~~wivfDG~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRcg~v~~~~~~~ 339 (367)
...+ ...++.+|+| ++|..-.+..|.+|. .| | ..|++..||+-+++....-|+..|| ++.+.+-.-
T Consensus 75 ~~~p~~~~~kvviId-ead~lt~~a~naLLk---~L-----E--ep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~ 141 (305)
T 2gno_A 75 NYSPELYTRKYVIVH-DCERMTQQAANAFLK---AL-----E--EPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVP 141 (305)
T ss_dssp TSCCSSSSSEEEEET-TGGGBCHHHHHHTHH---HH-----H--SCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCC
T ss_pred hhccccCCceEEEec-cHHHhCHHHHHHHHH---HH-----h--CCCCCeEEEEEECChHhChHHHHce--eEeCCCCCH
Confidence 3333 2457899999 444443444454431 11 1 1356788899999999999999999 888876542
Q ss_pred chHHHHHHHHHHh
Q psy4734 340 SWTTFFLSYQNEL 352 (367)
Q Consensus 340 ~~~~~~~swl~~~ 352 (367)
.-+..|+...
T Consensus 142 ---~~i~~~L~~~ 151 (305)
T 2gno_A 142 ---KEFRDLVKEK 151 (305)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHH
Confidence 4456676554
No 49
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.30 E-value=0.0016 Score=62.63 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=21.8
Q ss_pred hhhheeccccCCCchhhHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.+.++|.||||+|||++.+.++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999988765
No 50
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.24 E-value=0.0021 Score=60.64 Aligned_cols=133 Identities=15% Similarity=0.168 Sum_probs=69.5
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHHh
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMA 261 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~~ 261 (367)
.++++|.||||+|||++.+.++..++ .....+++. ++.+.+-.. ..+.+..+++.+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~--------------~~~~~v~~~-----~l~~~~~g~----~~~~~~~~f~~a~ 107 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN--------------STFFSVSSS-----DLVSKWMGE----SEKLVKQLFAMAR 107 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT--------------CEEEEEEHH-----HHHTTTGGG----HHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC--------------CCEEEEchH-----HHhhcccch----HHHHHHHHHHHHH
Confidence 46799999999999999998876541 122233332 222221101 1223333443332
Q ss_pred cCCCCCceEEEEcCCCChHh--------------hhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhh
Q psy4734 262 VSTTPDRKWIMFDGPIDAVW--------------IENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS 327 (367)
Q Consensus 262 ~~~~~~~~wivfDG~~d~~w--------------ie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvs 327 (367)
. ..+..|++| ++|... ...+-..++.- ..-+.++.+|.-+.......||..+
T Consensus 108 ~---~~~~vl~iD-Eid~l~~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~~v~vi~atn~~~~ld~al~~ 173 (322)
T 3eie_A 108 E---NKPSIIFID-QVDALTGTRGEGESEASRRIKTELLVQMNGV----------GNDSQGVLVLGATNIPWQLDSAIRR 173 (322)
T ss_dssp H---TSSEEEEEE-CGGGGSCC------CCTHHHHHHHHHHHGGG----------GTSCCCEEEEEEESCGGGSCHHHHH
T ss_pred h---cCCeEEEec-hhhhhhccCCCCcchHHHHHHHHHHHHhccc----------cccCCceEEEEecCChhhCCHHHHc
Confidence 2 245688888 444321 11111122210 0123345667677777788999999
Q ss_pred cee-eEEecccCCc-hHHHHHHHHHH
Q psy4734 328 RVG-MIYFELKCIS-WTTFFLSYQNE 351 (367)
Q Consensus 328 Rcg-~v~~~~~~~~-~~~~~~swl~~ 351 (367)
||. .+++...+.. -..++...+..
T Consensus 174 Rf~~~i~~~~p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 174 RFERRIYIPLPDLAARTTMFEINVGD 199 (322)
T ss_dssp HCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred ccCeEEEeCCCCHHHHHHHHHHHhcc
Confidence 994 5667654432 22344444433
No 51
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.20 E-value=0.0055 Score=58.73 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=69.4
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 260 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~ 260 (367)
..++++|.||+|+|||++.+.++..++ .....+++. ++++.+-... .+.+..++..+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~--------------~~~~~i~~~-----~l~~~~~g~~----~~~~~~~~~~a 172 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG--------------ATFFSISAS-----SLTSKWVGEG----EKMVRALFAVA 172 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT--------------CEEEEEEGG-----GGCCSSTTHH----HHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC--------------CeEEEEehH-----HhhccccchH----HHHHHHHHHHH
Confidence 456899999999999999998876541 122334433 2332221110 11222223222
Q ss_pred hcCCCCCceEEEEcCCCChHh-----------hhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchhhce
Q psy4734 261 AVSTTPDRKWIMFDGPIDAVW-----------IENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRV 329 (367)
Q Consensus 261 ~~~~~~~~~wivfDG~~d~~w-----------ie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvsRc 329 (367)
. ...+..|++| ++|... ...++.+| ..-.|-....+.++.+|.-+.......|+..+||
T Consensus 173 ~---~~~~~vl~iD-Eid~l~~~~~~~~~~~~~~~~~~lL------~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf 242 (357)
T 3d8b_A 173 R---CQQPAVIFID-EIDSLLSQRGDGEHESSRRIKTEFL------VQLDGATTSSEDRILVVGATNRPQEIDEAARRRL 242 (357)
T ss_dssp H---HTCSEEEEEE-THHHHTBC------CHHHHHHHHHH------HHHHC----CCCCEEEEEEESCGGGBCHHHHTTC
T ss_pred H---hcCCeEEEEe-CchhhhccCCCCcchHHHHHHHHHH------HHHhcccccCCCCEEEEEecCChhhCCHHHHhhC
Confidence 1 1345789999 332210 01111111 1111111122345666777777777889999999
Q ss_pred e-eEEecccCCc-hHHHHHHHHH
Q psy4734 330 G-MIYFELKCIS-WTTFFLSYQN 350 (367)
Q Consensus 330 g-~v~~~~~~~~-~~~~~~swl~ 350 (367)
. .+++...+.. ...++...+.
T Consensus 243 ~~~i~i~~p~~~~r~~il~~~~~ 265 (357)
T 3d8b_A 243 VKRLYIPLPEASARKQIVINLMS 265 (357)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHH
T ss_pred ceEEEeCCcCHHHHHHHHHHHHh
Confidence 8 5677654432 3334444443
No 52
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.12 E-value=0.013 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.8
Q ss_pred hhhheeccccCCCchhhHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+++|.||+|+|||++.+.++..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 5679999999999999999887754
No 53
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.98 E-value=0.0043 Score=56.71 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.4
Q ss_pred hheeccccCCCchhhHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
-++++|++||||||+.+.|++.+..
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3677899999999999999988754
No 54
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.76 E-value=0.00083 Score=64.45 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.9
Q ss_pred hhhheeccccCCCchhhHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+++|.||||+|||++.+.++..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999988765
No 55
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.65 E-value=0.055 Score=51.92 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=52.5
Q ss_pred hHHHHHhhhhh-heeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccch
Q psy4734 174 HLKKIFEVRHG-LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGI 252 (367)
Q Consensus 174 ~l~k~~~~~~~-v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGi 252 (367)
.+..+.....+ +.++||+||||||+++++...+..-... . .+..-+|-.......-+.+.........--
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~--------~-i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~ 184 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYH--------H-ILTIEDPIEFVHESKKCLVNQREVHRDTLG 184 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCC--------E-EEEEESSCCSCCCCSSSEEEEEEBTTTBSC
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCc--------E-EEEccCcHHhhhhccccceeeeeeccccCC
Confidence 45555555555 5567999999999999988776543111 1 122223332222211111110000000011
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCCChHhhhhhh
Q psy4734 253 LAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMN 286 (367)
Q Consensus 253 l~~~~r~~~~~~~~~~~wivfDG~~d~~wie~ln 286 (367)
+..+++.+. -.+++.|++|=|-|..-++.+-
T Consensus 185 ~~~~La~aL---~~~PdvillDEp~d~e~~~~~~ 215 (356)
T 3jvv_A 185 FSEALRSAL---REDPDIILVGEMRDLETIRLAL 215 (356)
T ss_dssp HHHHHHHHT---TSCCSEEEESCCCSHHHHHHHH
T ss_pred HHHHHHHHh---hhCcCEEecCCCCCHHHHHHHH
Confidence 333444432 2577999999999987766543
No 56
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.0041 Score=61.45 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.8
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-..|++|.||||+|||++.+.+|..+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45899999999999999999888755
No 57
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.18 E-value=0.05 Score=58.19 Aligned_cols=126 Identities=18% Similarity=0.175 Sum_probs=62.5
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccc-cccceecccccccccchHHHHHHHHh
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMG-QLYGEFDSASHEWRDGILAKTFREMA 261 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~-~l~G~~d~~~~~W~dGil~~~~r~~~ 261 (367)
.+++++||||+|||++.+.++..+..-... ..-....+..++..++..+ ... ++|.. .+..+++.+.
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p----~~l~~~~~~~l~~~~l~~g~~~~-------g~~~~-~l~~~~~~~~ 259 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVP----EGLKGKRIVSLQMGSLLAGAKYR-------GEFEE-RLKAVIQEVV 259 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSC----TTSTTCEEEEECC------------------CHHH-HHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCc----hhhcCCeEEEeehHHhhccCccc-------hHHHH-HHHHHHHHHH
Confidence 468999999999999999998876431100 0001223444555443211 111 12211 2334444443
Q ss_pred cCCCCCceEEEEcCCCChHh-----------hhhhhhccCCCCceeecccceeecCCCCeEEEecCCCC----ccCcchh
Q psy4734 262 VSTTPDRKWIMFDGPIDAVW-----------IENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE----FASPATV 326 (367)
Q Consensus 262 ~~~~~~~~wivfDG~~d~~w-----------ie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~----~asPatv 326 (367)
.. ..+..+++| ++|..- ...|..+++. ..+.+|.-++.-. ...||..
T Consensus 260 ~~--~~~~iL~ID-Ei~~l~~~~~~~g~~~~~~~L~~~l~~---------------~~i~~I~at~~~~~~~~~~d~aL~ 321 (854)
T 1qvr_A 260 QS--QGEVILFID-ELHTVVGAGKAEGAVDAGNMLKPALAR---------------GELRLIGATTLDEYREIEKDPALE 321 (854)
T ss_dssp TT--CSSEEEEEC-CC-------------------HHHHHT---------------TCCCEEEEECHHHHHHHTTCTTTC
T ss_pred hc--CCCeEEEEe-cHHHHhccCCccchHHHHHHHHHHHhC---------------CCeEEEEecCchHHhhhccCHHHH
Confidence 21 234677778 343221 1122333221 2355666665432 3579999
Q ss_pred hceeeEEecccC
Q psy4734 327 SRVGMIYFELKC 338 (367)
Q Consensus 327 sRcg~v~~~~~~ 338 (367)
+||..|++++-.
T Consensus 322 rRf~~i~l~~p~ 333 (854)
T 1qvr_A 322 RRFQPVYVDEPT 333 (854)
T ss_dssp SCCCCEEECCCC
T ss_pred hCCceEEeCCCC
Confidence 999999998755
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.94 E-value=0.053 Score=57.01 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=22.5
Q ss_pred hhhheeccccCCCchhhHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..+++++||+|+|||++.+.++..+.
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 35588999999999999999988764
No 59
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.87 E-value=0.025 Score=56.98 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=21.5
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
++++|.||+|+|||++++.+++.+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 678999999999999999988765
No 60
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.80 E-value=0.011 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.3
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999988765
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.66 E-value=0.056 Score=51.26 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=71.6
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCC-ccccccce----e---ccccccc-ccchHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSI-TMGQLYGE----F---DSASHEW-RDGILA 254 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~-t~~~l~G~----~---d~~~~~W-~dGil~ 254 (367)
.+++.||+|+|||++++.++..+.... .+.+..+|.... +..+++.. + .+. ..+ .+.++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~----------~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~ 114 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKT----------TARFVYINGFIYRNFTAIIGEIARSLNIPFPR-RGLSRDEFLA 114 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSC----------CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS-SCCCHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhc----------CeeEEEEeCccCCCHHHHHHHHHHHhCccCCC-CCCCHHHHHH
Confidence 578899999999999998876542110 123334553322 22222211 1 111 111 112222
Q ss_pred HHHHHHhcCCCCCceEEEEcCC--CChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCC---CccCcchhhce
Q psy4734 255 KTFREMAVSTTPDRKWIMFDGP--IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENL---EFASPATVSRV 329 (367)
Q Consensus 255 ~~~r~~~~~~~~~~~wivfDG~--~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l---~~asPatvsRc 329 (367)
.+.+.... ...+..|++|-. ++....+.|..++++- + ++ -..++.+|+=+.+. ....|...+||
T Consensus 115 ~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~L~~~~~~~-----~-~~---~~~~~~iI~~~~~~~~~~~l~~~~~~r~ 183 (389)
T 1fnn_A 115 LLVEHLRE--RDLYMFLVLDDAFNLAPDILSTFIRLGQEA-----D-KL---GAFRIALVIVGHNDAVLNNLDPSTRGIM 183 (389)
T ss_dssp HHHHHHHH--TTCCEEEEEETGGGSCHHHHHHHHHHTTCH-----H-HH---SSCCEEEEEEESSTHHHHTSCHHHHHHH
T ss_pred HHHHHHhh--cCCeEEEEEECccccchHHHHHHHHHHHhC-----C-CC---CcCCEEEEEEECCchHHHHhCHHhhhcC
Confidence 22222211 244679999932 3455555555444321 0 00 01245566655554 55778889999
Q ss_pred e--eEEecccCC-chHHHHHHHH
Q psy4734 330 G--MIYFELKCI-SWTTFFLSYQ 349 (367)
Q Consensus 330 g--~v~~~~~~~-~~~~~~~swl 349 (367)
+ .+.+.|-.. ....++...+
T Consensus 184 ~~~~i~~~pl~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 184 GKYVIRFSPYTKDQIFDILLDRA 206 (389)
T ss_dssp TTCEEECCCCBHHHHHHHHHHHH
T ss_pred CCceEEeCCCCHHHHHHHHHHHH
Confidence 8 577776432 1344444444
No 62
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.63 E-value=0.01 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|++||||||+.+.|++.+
T Consensus 6 i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6678999999999999998865
No 63
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.59 E-value=0.011 Score=49.73 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=19.9
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++||||||+.+.|+..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999988765
No 64
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.57 E-value=0.014 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=20.6
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||+.+.|++.++
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999998775
No 65
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.34 E-value=0.017 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.296 Sum_probs=20.7
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++|++||||||+.+.|+..+.
T Consensus 28 i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 66789999999999999998885
No 66
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.016 Score=56.52 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.5
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...|++|.||||+|||.+.+.+|..+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 45899999999999999998887654
No 67
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.33 E-value=0.016 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.1
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|++||||||+.+.|++.++.
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 567899999999999999988763
No 68
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.33 E-value=0.017 Score=49.26 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.8
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+.++|++||||||+.+.|++.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 347788999999999999998776
No 69
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.32 E-value=0.015 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||+++.|...+
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 5678999999999999987654
No 70
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.29 E-value=0.02 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.8
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-+.+.|++||||||+.+.|++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 347788999999999999998876
No 71
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.24 E-value=0.018 Score=50.09 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.4
Q ss_pred hhhheeccccCCCchhhHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...+.++|++||||||+.+.|++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3457888999999999999998776
No 72
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.23 E-value=0.018 Score=49.05 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.2
Q ss_pred hhhheeccccCCCchhhHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..++.+.||+|+||||+.+.++..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688899999999999999887664
No 73
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.21 E-value=0.019 Score=57.53 Aligned_cols=120 Identities=22% Similarity=0.295 Sum_probs=66.1
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 260 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~ 260 (367)
...+++|.||||+|||++.+.++..++ ..+..+|+.++. .+++|.. .|-+..++..+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~--------------~~fv~vn~~~l~-~~~~g~~--------~~~~~~~f~~A 293 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETG--------------AFFFLINGPEIM-SKLAGES--------ESNLRKAFEEA 293 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCS--------------SEEEEEEHHHHH-TSCTTHH--------HHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhC--------------CCEEEEEchHhh-hhhcchh--------HHHHHHHHHHH
Confidence 346799999999999999988765431 123345544332 2334422 12233344443
Q ss_pred hcCCCCCceEEEEcCCCChH--------------hhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCCccCcchh
Q psy4734 261 AVSTTPDRKWIMFDGPIDAV--------------WIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFASPATV 326 (367)
Q Consensus 261 ~~~~~~~~~wivfDG~~d~~--------------wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatv 326 (367)
.. ..+..+++| ++|.. ....|-.+|+. ...+.++.+|.-|.......|+..
T Consensus 294 ~~---~~p~iLfLD-EId~l~~~~~~~~~~~~~~~~~~LL~~ld~-----------~~~~~~v~vIaaTn~~~~Ld~al~ 358 (489)
T 3hu3_A 294 EK---NAPAIIFID-ELDAIAPKREKTHGEVERRIVSQLLTLMDG-----------LKQRAHVIVMAATNRPNSIDPALR 358 (489)
T ss_dssp HH---TCSEEEEEE-SHHHHCBCTTSCCCHHHHHHHHHHHHHHHH-----------SCTTSCEEEEEEESCGGGBCGGGG
T ss_pred Hh---cCCcEEEec-chhhhccccccccchHHHHHHHHHHHHhhc-----------cccCCceEEEEecCCccccCHHHh
Confidence 22 234678888 33221 12223333331 122445667777777777788988
Q ss_pred h--ceee-EEecccC
Q psy4734 327 S--RVGM-IYFELKC 338 (367)
Q Consensus 327 s--Rcg~-v~~~~~~ 338 (367)
+ |+.. +++...+
T Consensus 359 r~gRf~~~i~i~~P~ 373 (489)
T 3hu3_A 359 RFGRFDREVDIGIPD 373 (489)
T ss_dssp STTSSCEEEECCCCC
T ss_pred CCCcCceEEEeCCCC
Confidence 8 6654 6666544
No 74
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.19 E-value=0.014 Score=57.47 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=22.9
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...|++|.||||+|||++.+.+|..+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999988765
No 75
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.06 E-value=0.018 Score=48.75 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.7
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.+.+.|++||||||+.+.|++.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 477889999999999999987763
No 76
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.06 E-value=0.019 Score=49.01 Aligned_cols=22 Identities=45% Similarity=0.584 Sum_probs=19.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|++||||||+.+.|++.+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6678999999999999998766
No 77
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.06 E-value=0.02 Score=56.76 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.2
Q ss_pred hhhhhheeccccCCCchhhHHHHHHHH
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-..|++|.||||+|||++.+.+|..+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 356899999999999999998887654
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.06 E-value=0.021 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.2
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++||+|+||||++++++..+.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999998774
No 79
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.04 E-value=0.023 Score=49.74 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.7
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-+.++||+||||||+.+.|+..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 356789999999999999988775
No 80
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.04 E-value=0.018 Score=47.40 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=23.2
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHH
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~ 204 (367)
+.........+++.||+|+|||++.+.++.
T Consensus 17 ~~~~a~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 17 LQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp HHHHTTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHhCCCCCEEEECCCCCCHHHHHHHHHH
Confidence 333445666799999999999999887764
No 81
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.03 E-value=0.02 Score=49.61 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.2
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.+.|++||||||+.+.|++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36778999999999999998876
No 82
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.99 E-value=0.019 Score=56.57 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.5
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...|++|.||||+|||.+.+.++..+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 45789999999999999998887654
No 83
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.95 E-value=0.021 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=19.8
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.+.++||+|+||||+++.|...+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 46788999999999999987654
No 84
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.92 E-value=0.02 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||+.++|+..+
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 5678999999999999987653
No 85
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.92 E-value=0.02 Score=48.75 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 7 I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6678999999999999998765
No 86
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.91 E-value=0.14 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=20.7
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.++||+||||||+++.|...+..
T Consensus 139 i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhcCc
Confidence 678899999999999998877653
No 87
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.87 E-value=0.023 Score=49.38 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||+.+.|+..+
T Consensus 32 i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6678999999999999998766
No 88
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.87 E-value=0.014 Score=53.86 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.1
Q ss_pred hhhhhheeccccCCCchhhHHHHHHH
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~~a 205 (367)
....|+.+.||+|+||||+.++++..
T Consensus 42 ~~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 42 VTPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44577999999999999999988764
No 89
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.87 E-value=0.021 Score=48.10 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.8
Q ss_pred heeccccCCCchhhHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~ 204 (367)
+++.|+|||||||+.+.|++
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 56789999999999998876
No 90
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.78 E-value=0.019 Score=49.08 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.1
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.++||+||||||+.+.|+..
T Consensus 12 i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 667899999999999988653
No 91
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.75 E-value=0.025 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||+.+.|+..+
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHhh
Confidence 6678999999999999988765
No 92
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.74 E-value=0.023 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.2
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...+++++||+|+|||++.+.++..+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 35679999999999999999987654
No 93
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.73 E-value=0.023 Score=47.67 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=20.6
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-+.+.|++||||||+.+.|++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 367889999999999999988763
No 94
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.71 E-value=0.033 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=21.8
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...|++++||||+|||++.+.++...
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999887643
No 95
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.69 E-value=0.024 Score=48.72 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||+.++|...+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999999988655
No 96
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.65 E-value=0.016 Score=52.20 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.8
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...|+.++||+|+||||+.+.++..+
T Consensus 48 ~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 48 IPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999887644
No 97
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.61 E-value=0.024 Score=48.20 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.1
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||+.+.|++.++
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67889999999999999988663
No 98
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.61 E-value=0.019 Score=47.76 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=19.3
Q ss_pred CCceEEEEcCCCChHhhhhhhhccC
Q psy4734 266 PDRKWIMFDGPIDAVWIENMNTVLD 290 (367)
Q Consensus 266 ~~~~wivfDG~~d~~wie~lnsvld 290 (367)
...+.+|+||...+...+.+....+
T Consensus 76 ~~~~~vi~dg~~~~~~~~~l~~~~~ 100 (179)
T 3lw7_A 76 SNHDLVVFDGVRSLAEVEEFKRLLG 100 (179)
T ss_dssp CCCSCEEEECCCCHHHHHHHHHHHC
T ss_pred cCCCeEEEeCCCCHHHHHHHHHHhC
Confidence 3457899999988888888877653
No 99
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.61 E-value=0.028 Score=47.72 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.2
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.+++.|++||||||+.+.|++.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 47788999999999999988765
No 100
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.53 E-value=0.043 Score=48.13 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.5
Q ss_pred hhhheeccccCCCchhhHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
...+++.||+|+|||++.+.++..+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46688999999999999999887664
No 101
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.49 E-value=0.029 Score=49.33 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.2
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++||||||+.+.|++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36688999999999999998866
No 102
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.49 E-value=0.029 Score=48.18 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=19.9
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||+.+.|++.++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCccCHHHHHHHHHHhcC
Confidence 56789999999999999988763
No 103
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.47 E-value=0.029 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.0
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.-+.++|++||||||+.+.|++.++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467889999999999999987663
No 104
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.46 E-value=0.041 Score=47.49 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.7
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.++++.||+|+|||++.+.++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999998887654
No 105
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.46 E-value=0.03 Score=48.44 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.3
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||+.+.|++.++
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 56789999999999999998775
No 106
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.43 E-value=0.023 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=20.2
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-+.++||+||||||+.+.|++.+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 346788999999999999988765
No 107
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.40 E-value=0.028 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.3
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.-+.+.|++||||||+.+.|++.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3477889999999999999988763
No 108
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.40 E-value=0.052 Score=51.30 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=36.4
Q ss_pred hhHHHHHhhh--hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc
Q psy4734 173 PHLKKIFEVR--HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT 233 (367)
Q Consensus 173 ~~l~k~~~~~--~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t 233 (367)
..+..++... .++++.||||+|||++.+.++..+....... +...+.+..+|...++
T Consensus 34 ~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~----~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARK----ELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTT----SSCCEEEEEEETTCCC
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhc----cCCceEEEEEeccccC
Confidence 3455554433 3477889999999999999888776433211 1124566678876654
No 109
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.38 E-value=0.032 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.9
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||+.+.|++.++
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 66789999999999999987653
No 110
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.36 E-value=0.032 Score=48.80 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.3
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999998765
No 111
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.35 E-value=0.028 Score=48.52 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||+.+.|+..+
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 5678999999999999987654
No 112
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.31 E-value=0.029 Score=47.99 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=17.6
Q ss_pred heeccccCCCchhhHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~ 204 (367)
+.++||+||||||+.+.|+.
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 46789999999999999875
No 113
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.24 E-value=0.028 Score=48.17 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.6
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-+.+.|++||||||+.+.|++.++
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467789999999999999988763
No 114
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.22 E-value=0.034 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.0
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|++||||||+.+.|++.++.
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 667899999999999999988753
No 115
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.21 E-value=0.03 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||+.+.|+..+
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHST
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 5678999999999999887654
No 116
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.21 E-value=0.035 Score=46.30 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.0
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||+.+.|++.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999988763
No 117
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.18 E-value=0.022 Score=48.20 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=15.3
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 8 I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEECCC----CHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6678999999999999988765
No 118
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.16 E-value=0.033 Score=49.07 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.7
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-+.+.|++||||||+.+.|++.++
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 367789999999999999988764
No 119
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.12 E-value=0.034 Score=48.39 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=19.8
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++|++||||||+.++|+..+.
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 55789999999999999887663
No 120
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.08 E-value=0.029 Score=52.18 Aligned_cols=129 Identities=19% Similarity=0.299 Sum_probs=66.4
Q ss_pred hhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREM 260 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~~ 260 (367)
..+++++.||+|+|||++.+.++..+. .....++...+. ..++|.. . ..+..++..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~--------------~~~i~v~~~~l~-~~~~g~~----~----~~~~~~f~~a 104 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQ--------------ANFISIKGPELL-TMWFGES----E----ANVREIFDKA 104 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT--------------CEEEEECHHHHH-HHHHTTC----T----THHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhC--------------CCEEEEEhHHHH-hhhcCch----H----HHHHHHHHHH
Confidence 346799999999999999998876542 122234432221 2223321 1 1123333333
Q ss_pred hcCCCCCceEEEEcCCCChHhhhhhhhccCC--------CCceeecccceeecCCCCeEEEecCCCCccCcchhh--cee
Q psy4734 261 AVSTTPDRKWIMFDGPIDAVWIENMNTVLDD--------NKKLCLINGEIIKMSNTMNLIFECENLEFASPATVS--RVG 330 (367)
Q Consensus 261 ~~~~~~~~~wivfDG~~d~~wie~lnsvldd--------n~~l~L~~ge~i~l~~~~~~ifE~~~l~~asPatvs--Rcg 330 (367)
.. ..+..+++| ++|....+.=...-+. +..|..-+| +.-..++.+|.-|.......||.++ |+.
T Consensus 105 ~~---~~p~il~iD-Eid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~--~~~~~~v~vi~atn~~~~ld~al~r~gRf~ 178 (301)
T 3cf0_A 105 RQ---AAPCVLFFD-ELDSIAKARGGNIGDGGGAADRVINQILTEMDG--MSTKKNVFIIGATNRPDIIDPAILRPGRLD 178 (301)
T ss_dssp HH---TCSEEEEEC-STTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS--SCTTSSEEEEEEESCGGGSCGGGGSTTSSC
T ss_pred Hh---cCCeEEEEE-ChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc--ccCCCCEEEEEecCCccccChHHhcCCccc
Confidence 21 235788888 6665432210000000 011111111 1123456677777777778888887 885
Q ss_pred -eEEecccC
Q psy4734 331 -MIYFELKC 338 (367)
Q Consensus 331 -~v~~~~~~ 338 (367)
.+++...+
T Consensus 179 ~~i~i~~p~ 187 (301)
T 3cf0_A 179 QLIYIPLPD 187 (301)
T ss_dssp EEEECCCCC
T ss_pred eEEecCCcC
Confidence 66776544
No 121
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.08 E-value=0.037 Score=48.05 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.1
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|++||||||+.+.|++.++.
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 667899999999999999988754
No 122
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.01 E-value=0.039 Score=47.77 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 23 I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6678999999999999998876
No 123
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.01 E-value=0.03 Score=55.05 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.6
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...|++|.||||+|||.+.+.+|..+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh
Confidence 45899999999999999998887654
No 124
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.01 E-value=0.038 Score=48.58 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5678999999999999998876
No 125
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.99 E-value=0.037 Score=46.99 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6678999999999999998765
No 126
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.98 E-value=0.04 Score=47.15 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=20.5
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|++||||||+.+.|++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 457799999999999999987743
No 127
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.97 E-value=0.0078 Score=49.67 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=21.9
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHH
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
+.........+++.||+|+|||++.+.++
T Consensus 20 ~~~~~~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 20 VEAAAKRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp HHHHHTCSSCEEEEEETTCCHHHHHGGGC
T ss_pred HHHHhCCCCcEEEECCCCccHHHHHHHHH
Confidence 33344556779999999999999977654
No 128
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.95 E-value=0.043 Score=46.84 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=21.0
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.++|++||||||+.+.|+..+..
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 567899999999999999988753
No 129
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.93 E-value=0.036 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++|+..+
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6678999999999999987654
No 130
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.91 E-value=0.024 Score=51.89 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.7
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...|+.++||+|+||||+.+.++..+
T Consensus 72 ~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 72 IPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcChHHHHHHHHHHHc
Confidence 34578999999999999999887654
No 131
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.89 E-value=0.036 Score=49.06 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++|+..+
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6688999999999999988754
No 132
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.75 E-value=0.044 Score=46.61 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.2
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||+.+.|++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999998775
No 133
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.75 E-value=0.041 Score=51.99 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCccCcchhhceeeE-EecccC
Q psy4734 307 NTMNLIFECENLEFASPATVSRVGMI-YFELKC 338 (367)
Q Consensus 307 ~~~~~ifE~~~l~~asPatvsRcg~v-~~~~~~ 338 (367)
+.+.++--++.....||+..+||+++ .+++..
T Consensus 149 ~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~ 181 (334)
T 1in4_A 149 QPFTLVGATTRSGLLSSPLRSRFGIILELDFYT 181 (334)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred CCeEEEEecCCcccCCHHHHHhcCceeeCCCCC
Confidence 35667777777888999999999864 577654
No 134
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.75 E-value=0.032 Score=50.57 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=20.0
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+||||||+.+.|++.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 46788999999999999999654
No 135
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.73 E-value=0.035 Score=48.59 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999987654
No 136
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.70 E-value=0.044 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||+.+.|++.+
T Consensus 4 i~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhcC
Confidence 5678999999999999988765
No 137
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.65 E-value=0.028 Score=48.84 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.3
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++|++||||||+.+.|++.+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999988775
No 138
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.56 E-value=0.05 Score=45.27 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=21.8
Q ss_pred hhhheeccccCCCchhhHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
...+.++||+|+|||++.++++..+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34577899999999999999887664
No 139
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.56 E-value=0.035 Score=49.12 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.9
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.+.|++||||||+.+.|++.+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 36778999999999999998765
No 140
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.55 E-value=0.043 Score=48.90 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=19.5
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||++++|...+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 46678999999999999987654
No 141
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.55 E-value=0.045 Score=50.34 Aligned_cols=23 Identities=48% Similarity=0.475 Sum_probs=20.1
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.++++||+|+||||++++|....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36789999999999999998765
No 142
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.54 E-value=0.047 Score=46.74 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.++|++||||||+.+.|++.
T Consensus 13 I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 678899999999999999876
No 143
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.51 E-value=0.05 Score=48.02 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|||||||+|..+.|++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4677999999999999988765
No 144
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.47 E-value=0.047 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999998866
No 145
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.45 E-value=0.052 Score=49.66 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=20.6
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.++||+||||||+++++...+..
T Consensus 28 v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHhCCC
Confidence 667899999999999998877643
No 146
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.44 E-value=0.052 Score=45.99 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.2
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++|++||||||+.+.|+..+.
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 56789999999999999998764
No 147
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.42 E-value=0.047 Score=49.69 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.0
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..++++|.||+|+|||++.+.++..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34679999999999999999888763
No 148
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.40 E-value=0.045 Score=50.77 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|||||||||+.+.|++.+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6678999999999999887654
No 149
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.39 E-value=0.052 Score=48.09 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999998876
No 150
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.37 E-value=0.047 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.3
Q ss_pred hheeccccCCCchhhHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~a 205 (367)
.+.++||+|+||||+.+.|.+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999998877554
No 151
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.27 E-value=0.043 Score=48.69 Aligned_cols=22 Identities=32% Similarity=0.247 Sum_probs=13.3
Q ss_pred heeccccCCCchhhHHHHH-HHH
Q psy4734 185 LMVVGESFGGKTTAYQTLA-DSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~-~al 206 (367)
+.++||+||||||+.++|+ ..+
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEECSCC----CHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 5678999999999999988 654
No 152
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.23 E-value=0.047 Score=48.43 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=20.8
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++++.||||+|||+....|++.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999988887765
No 153
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.22 E-value=0.053 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.8
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|++||||||+.+.|++.+
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6678999999999999998876
No 154
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.17 E-value=0.049 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||.|+||||++++++..+
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6688999999999999998876
No 155
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.11 E-value=0.052 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.9
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-+.|.|++||||||+.+.|++.++
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477889999999999999988763
No 156
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.07 E-value=0.064 Score=46.88 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.6
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||+.+.|+..+.
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 66789999999999999998876
No 157
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.05 E-value=0.04 Score=47.49 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.3
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999988765
No 158
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.03 E-value=0.047 Score=49.40 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.7
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-++++|++||||||+.+.|++.+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 36788999999999999988765
No 159
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.99 E-value=0.049 Score=47.04 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=19.6
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.+.|++||||||+.+.|++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 36778999999999999988764
No 160
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.88 E-value=0.071 Score=46.31 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.5
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++||+|+||||++++++..+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhcc
Confidence 56889999999999999998775
No 161
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.86 E-value=0.065 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+++.|||||||+|..+.|++.+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5677999999999999988765
No 162
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.85 E-value=0.049 Score=46.15 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=15.2
Q ss_pred heeccccCCCchhhHHH
Q psy4734 185 LMVVGESFGGKTTAYQT 201 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~ 201 (367)
+.++||+||||||++++
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56789999999999994
No 163
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.82 E-value=0.06 Score=47.28 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=19.1
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+|+||||+.+.|....
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 36678999999999999887643
No 164
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.79 E-value=0.056 Score=46.84 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=17.7
Q ss_pred heeccccCCCchhhHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~ 204 (367)
+.++|++||||||+.+.|+.
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999876
No 165
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.78 E-value=0.066 Score=50.03 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.8
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.++++.||+|+|||++.+.++..+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 5788999999999999999887664
No 166
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.73 E-value=0.068 Score=48.07 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6778999999999999998765
No 167
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.71 E-value=0.24 Score=50.55 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=21.2
Q ss_pred hhhheeccccCCCchhhHHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
..-+++.|+||+||||++..+...+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 344667799999999999888876653
No 168
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.68 E-value=0.07 Score=47.91 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.0
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+-+.||+||||||+.++|+..++
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 55789999999999999988764
No 169
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.66 E-value=0.062 Score=48.91 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=21.6
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..+.++|++||||||+.+.|+..++
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3578899999999999999998763
No 170
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.51 E-value=0.063 Score=46.38 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.0
Q ss_pred heeccccCCCchhhHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~ 204 (367)
+.++|++||||||+.+.|+.
T Consensus 4 i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 56789999999999999887
No 171
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.43 E-value=0.054 Score=48.70 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6688999999999999877543
No 172
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.41 E-value=0.08 Score=49.59 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=21.2
Q ss_pred hheeccccCCCchhhHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
-+.++||+||||||+++.|+..+..
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4678899999999999999877653
No 173
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.41 E-value=0.079 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.7
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.++||+||||||+.++|+..+..
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHHhhccc
Confidence 557899999999999999887754
No 174
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.27 E-value=0.074 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 5 i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 5678999999999999998865
No 175
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.21 E-value=0.075 Score=52.50 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.8
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
++++|.||||+|||++.+.++..++
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhC
Confidence 5799999999999999999998875
No 176
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.15 E-value=0.078 Score=46.77 Aligned_cols=22 Identities=23% Similarity=0.063 Sum_probs=19.2
Q ss_pred hheeccccCCCchhhHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~a 205 (367)
-+.++||+||||||++++++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3668899999999999998875
No 177
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.12 E-value=0.082 Score=45.89 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=20.1
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||+.+.|+..+.
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 56789999999999999988764
No 178
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.04 E-value=0.078 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+|||++...|++.+
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6678999999999998888765
No 179
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.93 E-value=0.095 Score=49.03 Aligned_cols=25 Identities=44% Similarity=0.603 Sum_probs=21.5
Q ss_pred hheeccccCCCchhhHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
-+.++||+|+||||+++.|+..+..
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999987753
No 180
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.91 E-value=0.22 Score=48.01 Aligned_cols=117 Identities=17% Similarity=0.232 Sum_probs=72.2
Q ss_pred HHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceecc---cccccc
Q psy4734 177 KIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDS---ASHEWR 249 (367)
Q Consensus 177 k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~---~~~~W~ 249 (367)
++-.....+++.|++|+||+++.+.+... .... .-....+|+.+++ -.+|||.-.. ....+.
T Consensus 155 ~~a~~~~~vli~Ge~GtGK~~lAr~ih~~----s~r~-------~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~ 223 (387)
T 1ny5_A 155 KISCAECPVLITGESGVGKEVVARLIHKL----SDRS-------KEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSK 223 (387)
T ss_dssp HHTTCCSCEEEECSTTSSHHHHHHHHHHH----STTT-------TSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCB
T ss_pred HhcCCCCCeEEecCCCcCHHHHHHHHHHh----cCCC-------CCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccccc
Confidence 33445566889999999999987765543 2211 1124457877775 4578886321 111245
Q ss_pred cchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecC
Q psy4734 250 DGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECE 316 (367)
Q Consensus 250 dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~ 316 (367)
.|.+..+ +.-.+++| |.++..--..|-.+|++...-.+.+. -..+.++|+|+-|.
T Consensus 224 ~g~~~~a----------~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~ 280 (387)
T 1ny5_A 224 EGFFELA----------DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGR--KEIEVNVRILAATN 280 (387)
T ss_dssp CCHHHHT----------TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCC--SBEECCCEEEEEES
T ss_pred CCceeeC----------CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCC
Confidence 5654332 12478899 66777777778888877655544333 34556789988765
No 181
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.89 E-value=0.078 Score=47.87 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=19.3
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-+.++||+||||||++++++..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678999999999999977543
No 182
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.88 E-value=0.094 Score=47.24 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.9
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.+.||+||||||+.+.|++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36678999999999999998765
No 183
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.79 E-value=0.058 Score=46.15 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=21.3
Q ss_pred hheeccccCCCchhhHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
.+.++|++||||||+.+.|...+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4668899999999999999887753
No 184
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.75 E-value=0.11 Score=49.34 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=21.3
Q ss_pred hheeccccCCCchhhHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
-+.++||+|+||||+++.|+..+..
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3678899999999999999987643
No 185
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.71 E-value=0.065 Score=47.77 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5678999999999999877543
No 186
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.70 E-value=0.083 Score=46.81 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=18.2
Q ss_pred hheeccccCCCchhhHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~ 204 (367)
-+.++||+||||||+++.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 366789999999999999874
No 187
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=90.65 E-value=0.41 Score=45.86 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=94.2
Q ss_pred HHHHhhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc----cccccceecc---ccccc
Q psy4734 176 KKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT----MGQLYGEFDS---ASHEW 248 (367)
Q Consensus 176 ~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t----~~~l~G~~d~---~~~~W 248 (367)
.++-.....+++.|++|+||+.+.+.+.. ...... . ...+|+.+++ ..+|||.-.. ....+
T Consensus 146 ~~~a~~~~~vli~GesGtGKe~lAr~ih~----~s~r~~------~--fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~ 213 (368)
T 3dzd_A 146 PKIAKSKAPVLITGESGTGKEIVARLIHR----YSGRKG------A--FVDLNCASIPQELAESELFGHEKGAFTGALTR 213 (368)
T ss_dssp HHHHTSCSCEEEECCTTSSHHHHHHHHHH----HHCCCS------C--EEEEESSSSCTTTHHHHHHEECSCSSSSCCCC
T ss_pred hhhhccchhheEEeCCCchHHHHHHHHHH----hccccC------C--cEEEEcccCChHHHHHHhcCccccccCCcccc
Confidence 33445566788999999999988776543 322211 1 5567777765 4568886421 11346
Q ss_pred ccchHHHHHHHHhcCCCCCceEEEEc--CCCChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCC-CC------
Q psy4734 249 RDGILAKTFREMAVSTTPDRKWIMFD--GPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECEN-LE------ 319 (367)
Q Consensus 249 ~dGil~~~~r~~~~~~~~~~~wivfD--G~~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~-l~------ 319 (367)
+.|.+..+ +.--+++| |.+++..-..|-.+|++.....+.+... .+-++|+|+-|+. +.
T Consensus 214 ~~g~~~~a----------~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~--~~~~~rii~at~~~l~~~v~~g 281 (368)
T 3dzd_A 214 KKGKLELA----------DQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQK--IEVDIRVISATNKNLEEEIKKG 281 (368)
T ss_dssp EECHHHHT----------TTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCB--EECCCEEEEEESSCHHHHHHTT
T ss_pred cCChHhhc----------CCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcc--eeeeeEEEEecCCCHHHHHHcC
Confidence 67766422 11248888 6778888888888888776666655443 4457999998763 21
Q ss_pred ccCcchhhceeeEEe--cccC---CchHHHHHHHHHHhh
Q psy4734 320 FASPATVSRVGMIYF--ELKC---ISWTTFFLSYQNELK 353 (367)
Q Consensus 320 ~asPatvsRcg~v~~--~~~~---~~~~~~~~swl~~~~ 353 (367)
.-.+....|+..+.+ .|-. =.-..++..+++...
T Consensus 282 ~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~ 320 (368)
T 3dzd_A 282 NFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFA 320 (368)
T ss_dssp SSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHH
Confidence 233467788877654 3321 123456666666543
No 188
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.55 E-value=0.1 Score=46.53 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.6
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|++||||||..+.|++.+..
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Confidence 556799999999999999987753
No 189
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.43 E-value=0.13 Score=51.86 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=24.2
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHH
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.-++.....+.++||+||||||++++|...+
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44445556668889999999999998876544
No 190
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.43 E-value=0.086 Score=46.06 Aligned_cols=22 Identities=41% Similarity=0.294 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||+++.++..+
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6678999999999999987643
No 191
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.41 E-value=0.07 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.1
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||+.+.|++.++
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 66789999999999999988764
No 192
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.41 E-value=0.13 Score=44.00 Aligned_cols=26 Identities=27% Similarity=0.274 Sum_probs=21.5
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
..+.++|++||||||+...|...+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 34678899999999999998887753
No 193
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.24 E-value=0.12 Score=48.60 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.9
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+.++||+||||||++++|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 447789999999999999998876
No 194
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.23 E-value=0.1 Score=45.62 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=17.8
Q ss_pred heeccccCCCchhhHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~ 204 (367)
+.+.|++||||||+.+.|++
T Consensus 7 I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999876
No 195
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.23 E-value=0.098 Score=44.85 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=18.9
Q ss_pred hheeccccCCCchhhHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~a 205 (367)
-+.++|++||||||+.+.|++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 3667899999999999998864
No 196
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.20 E-value=0.082 Score=47.56 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.9
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.++||+||||||++++++..
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 667899999999999987644
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.15 E-value=0.084 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||+.+.|+..+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 5678999999999999887644
No 198
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.13 E-value=0.083 Score=48.77 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6678999999999999877543
No 199
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.12 E-value=0.092 Score=50.42 Aligned_cols=22 Identities=41% Similarity=0.439 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 5678999999999999987543
No 200
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.10 E-value=0.084 Score=48.27 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5678999999999999877543
No 201
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.03 E-value=0.14 Score=43.83 Aligned_cols=25 Identities=32% Similarity=0.167 Sum_probs=20.7
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.-+.++|++|+||||+++.|...+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 3466889999999999999887664
No 202
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.01 E-value=0.12 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=17.7
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|++||||||+.+.|++.++.
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg~ 31 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFRR 31 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 557799999999999999987764
No 203
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.01 E-value=0.35 Score=48.60 Aligned_cols=59 Identities=10% Similarity=0.020 Sum_probs=39.5
Q ss_pred eeecchHHHHHHHHhcCCcc--cchhhHH----HHHh--hh--hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 150 FFFLSNDELLEILSETKDPL--RVQPHLK----KIFE--VR--HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 150 f~f~s~~~Ll~ils~~~~~~--~lq~~l~----k~~~--~~--~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+..+|-..+.+.+.++..+. ..-+... +.+. .. ..+.|.|.+||||||+.+.|++.|..
T Consensus 353 ~~~iSgt~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 353 TLNISGTELRRRLRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccCHHHHHHHHhCCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34566677888888887762 2223333 3231 11 23667899999999999999998864
No 204
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.00 E-value=0.13 Score=47.81 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.1
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.++|++||||||+.+.|+..+..
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 557799999999999999988865
No 205
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.99 E-value=0.088 Score=46.71 Aligned_cols=21 Identities=29% Similarity=0.233 Sum_probs=18.0
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.++||+||||||++++++..
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 567899999999999987654
No 206
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.98 E-value=0.087 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999977543
No 207
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.95 E-value=0.16 Score=51.68 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=35.9
Q ss_pred ecchHHHHHHHHhcCCcc-cch-hhHHHHHh------hhhh--heeccccCCCchhhHHHHHHHHH
Q psy4734 152 FLSNDELLEILSETKDPL-RVQ-PHLKKIFE------VRHG--LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 152 f~s~~~Ll~ils~~~~~~-~lq-~~l~k~~~------~~~~--v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.+|-.++.+.+..+..+. ... ++..+... ...| +.++|++||||||+.++|+..+.
T Consensus 329 ~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 329 TLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 345566777887776542 111 22222211 2233 66889999999999999998875
No 208
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.88 E-value=0.12 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.8
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++|++||||||+.++|+..+.
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 56789999999999999887664
No 209
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.83 E-value=0.09 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+-++||+||||||++++++..+
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 5678999999999999877543
No 210
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.78 E-value=0.11 Score=44.01 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.3
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..++||+||||||+++++.-++.
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 45789999999999998877664
No 211
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.77 E-value=0.093 Score=47.53 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=18.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 38 ~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5678999999999999977543
No 212
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.75 E-value=0.11 Score=47.03 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=18.2
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.++||+||||||++++++..
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 567899999999999998764
No 213
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.73 E-value=0.15 Score=48.87 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=23.7
Q ss_pred HHHHHhhhhhheeccccCCCchhhHHHHHHHH
Q psy4734 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 175 l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.-.+.....+.++||+||||||++++|...+
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 33344455567788999999999999876544
No 214
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.73 E-value=0.094 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999987543
No 215
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.71 E-value=0.14 Score=44.55 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|.+||||||+.+.|++.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 5577999999999999998764
No 216
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.68 E-value=0.095 Score=47.25 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=18.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6678999999999999977543
No 217
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.67 E-value=0.11 Score=50.27 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=18.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHcCC
Confidence 5678999999999999987544
No 218
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.66 E-value=0.13 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.||+||||||+.+.|+..+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 55779999999999999887664
No 219
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.64 E-value=0.11 Score=47.50 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=18.3
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.++||+||||||++++++..
T Consensus 49 ~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 567899999999999998764
No 220
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.62 E-value=0.18 Score=47.18 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.5
Q ss_pred hhhheeccccCCCchhhHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..++++.||+|+|||++...++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999998887664
No 221
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.56 E-value=0.11 Score=49.68 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5678999999999999987543
No 222
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.54 E-value=0.12 Score=47.46 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.3
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+++.|+|||||||+.+.|++.
T Consensus 5 I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 567899999999999988763
No 223
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.53 E-value=0.14 Score=49.07 Aligned_cols=25 Identities=44% Similarity=0.603 Sum_probs=21.5
Q ss_pred hheeccccCCCchhhHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
-+.++||+|+||||+++.|+..+..
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhccc
Confidence 3678899999999999999987753
No 224
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.53 E-value=0.11 Score=51.27 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.0
Q ss_pred hhhheeccccCCCchhhHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.+++++.||||+|||++.+.|+..+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999988765
No 225
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.48 E-value=0.12 Score=49.69 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHCCC
Confidence 5678999999999999987543
No 226
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.47 E-value=0.1 Score=47.85 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCCcHHHHHHHHHcCC
Confidence 5678999999999999877543
No 227
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.40 E-value=0.12 Score=49.68 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 5678999999999999987543
No 228
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.39 E-value=0.14 Score=50.41 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.3
Q ss_pred hhhheeccccCCCchhhHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.+++++.||+|+|||++.+.++..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999887664
No 229
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.35 E-value=0.1 Score=46.56 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.9
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.++||+||||||++++++..
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 37 LAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 567899999999999987654
No 230
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.34 E-value=0.1 Score=47.53 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++|+..+
T Consensus 44 ~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5678999999999999977543
No 231
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.29 E-value=0.3 Score=46.25 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=26.6
Q ss_pred heeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCC
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS 231 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka 231 (367)
+.++|++|+||||+++.|+..+.... .+|.+...+|.+
T Consensus 59 i~i~G~~g~GKSTl~~~l~~~~~~~~---------~~v~v~~~d~~~ 96 (341)
T 2p67_A 59 LGVTGTPGAGKSTFLEAFGMLLIREG---------LKVAVIAVDPSS 96 (341)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT---------CCEEEEEECCC-
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC---------CeEEEEeecCCc
Confidence 66789999999999999987765432 245555555544
No 232
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.21 E-value=0.11 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++|+..+
T Consensus 49 ~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 49 CALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 6688999999999999987654
No 233
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.17 E-value=0.13 Score=49.67 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCcHHHHHHHHHHcCC
Confidence 5678999999999999987543
No 234
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.14 E-value=0.13 Score=49.66 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHHcCC
Confidence 5678999999999999987543
No 235
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.13 E-value=0.11 Score=47.74 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++|+..+
T Consensus 48 ~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6678999999999999987543
No 236
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.06 E-value=0.16 Score=44.15 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.||+|+||||+.+.++..+.
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 66789999999999999886554
No 237
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.00 E-value=0.11 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++|+..+
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5678999999999999977543
No 238
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.88 E-value=0.12 Score=46.96 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5678999999999999987544
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.81 E-value=0.19 Score=47.14 Aligned_cols=26 Identities=42% Similarity=0.469 Sum_probs=22.0
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
.-++++|++|+||||+...|+..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 34778899999999999999987753
No 240
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.74 E-value=0.12 Score=46.88 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=18.3
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999876543
No 241
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.69 E-value=0.12 Score=47.22 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 36 ~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5678999999999999977543
No 242
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.68 E-value=0.14 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 50 ~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 6678999999999999987643
No 243
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.63 E-value=0.17 Score=49.57 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=24.1
Q ss_pred HHHHHhhhhh-heeccccCCCchhhHHHHHHHHH
Q psy4734 175 LKKIFEVRHG-LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 175 l~k~~~~~~~-v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+..++....+ +.++||+||||||+++++...+.
T Consensus 159 L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 159 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 5555444444 56779999999999999876653
No 244
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.62 E-value=0.19 Score=44.97 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=18.2
Q ss_pred heeccccCCCchhhHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
+.|.|++||||||..+.|++.+...
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4566999999999999999888653
No 245
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.61 E-value=0.19 Score=44.35 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.4
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.|.|++||||||..+.|++.+..
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 445699999999999999988864
No 246
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.58 E-value=0.14 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.8
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...|++|+||+|+|||++.+.++..+
T Consensus 63 ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 63 IPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999887643
No 247
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.54 E-value=0.18 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.7
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-++++|++|+||||+++.|+..+.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhh
Confidence 367889999999999999987764
No 248
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.41 E-value=0.19 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++|++||||||+.+.|++.+
T Consensus 19 i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6678999999999999998765
No 249
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.36 E-value=0.11 Score=49.67 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=18.1
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.++||+||||||++++++..
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTS
T ss_pred EEEECCCCccHHHHHHHHHcC
Confidence 567899999999999998754
No 250
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.29 E-value=0.19 Score=46.76 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=28.1
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCC
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS 231 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka 231 (367)
-++++|++|+||||+...|+..+..-. +.+|.+...++-.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~--------G~~V~lv~~D~~r 146 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEK--------HKKIAFITTDTYR 146 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--------CCCEEEEECCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc--------CCEEEEEecCccc
Confidence 467889999999999999998775311 2356555555543
No 251
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.27 E-value=0.17 Score=47.53 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=21.9
Q ss_pred hhhheeccccCCCchhhHHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.+.+++.||+|+|||++++.++..+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688899999999999999887664
No 252
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.18 E-value=0.17 Score=47.86 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=22.1
Q ss_pred HHhhhhhheeccccCCCchhhHHHHHHHH
Q psy4734 178 IFEVRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 178 ~~~~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.+.....+.++||+||||||++++|...+
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34445557789999999999998876543
No 253
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.12 E-value=0.17 Score=43.14 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.6
Q ss_pred hheeccccCCCchhhHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~ 204 (367)
-+.++|++|+||||+++.+..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 467889999999999887653
No 254
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.11 E-value=0.19 Score=43.08 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.6
Q ss_pred hheeccccCCCchhhHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~ 204 (367)
-+.++|++|+||||+++.+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 467889999999999887653
No 255
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.08 E-value=0.16 Score=48.07 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=19.8
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+||||||+.+.|++.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 36778999999999999988765
No 256
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.07 E-value=0.25 Score=46.01 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=21.6
Q ss_pred HHHHHhhhhh--heeccccCCCchhhHHHHH
Q psy4734 175 LKKIFEVRHG--LMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 175 l~k~~~~~~~--v~~~g~~gsGKTt~~~~L~ 203 (367)
+.++++...+ +.++||+|+||||++++|.
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 4445544444 6678999999999999876
No 257
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.04 E-value=0.14 Score=46.79 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 33 ~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999987544
No 258
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.84 E-value=0.15 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.1
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-+.++|++||||||++++|+..+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 346788999999999999988754
No 259
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.76 E-value=0.23 Score=43.90 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.1
Q ss_pred heeccccCCCchhhHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
+.|.|++||||||..+.|++.+...
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4566999999999999999888643
No 260
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.73 E-value=0.18 Score=48.50 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=17.9
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+-++||+||||||++++++..
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHhcC
Confidence 557899999999999987753
No 261
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.71 E-value=0.24 Score=46.02 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=21.8
Q ss_pred HHHHHhhhhh--heeccccCCCchhhHHHHHH
Q psy4734 175 LKKIFEVRHG--LMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 175 l~k~~~~~~~--v~~~g~~gsGKTt~~~~L~~ 204 (367)
+.+++....+ +.++||+|+||||++++|+.
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 4555554444 56789999999999888653
No 262
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.60 E-value=0.11 Score=49.67 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+||||||++++++..+
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5578999999999999987543
No 263
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=87.54 E-value=0.12 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.3
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++||+||||||++++++-++.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 45679999999999999887663
No 264
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.53 E-value=0.17 Score=48.19 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.3
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-+.+.||+||||||+.+.|++.++
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 356789999999999999888764
No 265
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.49 E-value=0.24 Score=47.45 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=22.1
Q ss_pred hheeccccCCCchhhHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
.+.++|++|+||||+.+.|+..+..
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4778999999999999999988764
No 266
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.41 E-value=0.21 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.4
Q ss_pred hhhheeccccCCCchhhHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~a 205 (367)
...+.+.||+|+||||+.+.|+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345778899999999999998864
No 267
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=87.41 E-value=0.3 Score=43.34 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=21.7
Q ss_pred chhhHHHHHhhhhhheeccccCCCchhhHHHH
Q psy4734 171 VQPHLKKIFEVRHGLMVVGESFGGKTTAYQTL 202 (367)
Q Consensus 171 lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L 202 (367)
+|..+...+.....+++.||+|||||+++...
T Consensus 65 ~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 65 FESEILEAISQNSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp GHHHHHHHHHHCSEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHH
Confidence 33333344444556788999999999877654
No 268
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.16 E-value=0.26 Score=44.34 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.1
Q ss_pred heeccccCCCchhhHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
+.+.|++||||||..+.|++.+...
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5567999999999999999888643
No 269
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=87.09 E-value=1.1 Score=40.13 Aligned_cols=36 Identities=22% Similarity=0.068 Sum_probs=25.9
Q ss_pred cccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc
Q psy4734 189 GESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT 233 (367)
Q Consensus 189 g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t 233 (367)
+..|+||||+.-.|+.++...+ .+|-+...+|..-+
T Consensus 26 ~kGGvGKTT~a~nLA~~la~~G---------~~VlliD~D~~~~~ 61 (262)
T 2ph1_A 26 GKGGVGKSTVTALLAVHYARQG---------KKVGILDADFLGPS 61 (262)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTT---------CCEEEEECCSSCCH
T ss_pred CCCCCCHHHHHHHHHHHHHHCC---------CeEEEEeCCCCCCC
Confidence 6789999999999999887542 34555566665533
No 270
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.05 E-value=0.29 Score=42.54 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.1
Q ss_pred heeccccCCCchhhHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
+.|.|..||||||..+.|++.|...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3466999999999999999988653
No 271
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=87.00 E-value=0.47 Score=47.66 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=31.2
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCcc
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITM 234 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~ 234 (367)
-+++.|.+|||||++++.+...+-.... ...|.+..++||....
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~~~~-------p~~v~l~liDpK~~el 212 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLYKAQ-------PEDVRFIMIDPKMLEL 212 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHTTCC-------TTTEEEEEECCSSSGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCC-------CceEEEEEECCchhhh
Confidence 3677899999999999998765432111 1347778899997543
No 272
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.97 E-value=0.19 Score=43.72 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.+.|++||||||+.+.|++.+
T Consensus 6 i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6678999999999999988765
No 273
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.92 E-value=0.17 Score=46.98 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.9
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.++||+||||||++++++..
T Consensus 67 ~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 667899999999999987654
No 274
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.82 E-value=0.13 Score=54.52 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=21.7
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-..|++|.||||+|||++.+.++..+
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999998877543
No 275
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.82 E-value=0.13 Score=48.22 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=18.9
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.+-++||+||||||++++|+..+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 36688999999999999876543
No 276
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.76 E-value=0.23 Score=48.71 Aligned_cols=21 Identities=38% Similarity=0.513 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.++|++|+||||++++|...
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 568899999999999998754
No 277
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.61 E-value=0.31 Score=40.35 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..++||.|+|||+++..+.-++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 45679999999999998877663
No 278
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.60 E-value=0.23 Score=48.58 Aligned_cols=32 Identities=31% Similarity=0.314 Sum_probs=23.1
Q ss_pred hhHHHHHhhhhhheeccccCCCchhhHHHHHH
Q psy4734 173 PHLKKIFEVRHGLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 173 ~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~ 204 (367)
..+........-+.++|++|+||||++++|..
T Consensus 60 ~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 60 DALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 33444444444567889999999999998765
No 279
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.58 E-value=0.32 Score=43.41 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.8
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|++||||||..+.|++.+..
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 445699999999999999998875
No 280
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.42 E-value=0.23 Score=49.22 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=21.7
Q ss_pred heeccccCCCchhhHHHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIA 210 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~ 210 (367)
+.++||+||||||++++|+..+....
T Consensus 141 v~IvGpnGsGKSTLlr~L~Gl~~p~~ 166 (460)
T 2npi_A 141 VVIVGGSQTGKTSLSRTLCSYALKFN 166 (460)
T ss_dssp EEEEESTTSSHHHHHHHHHHTTHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCcccccC
Confidence 77889999999999999987664443
No 281
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.41 E-value=0.22 Score=45.74 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=17.7
Q ss_pred heeccccCCCchhhHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~ 204 (367)
+.+.|++||||||+.+.|++
T Consensus 78 I~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 66789999999999999883
No 282
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.15 E-value=0.27 Score=40.69 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.1
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+||||+++.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36788999999999988765
No 283
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.06 E-value=0.3 Score=46.26 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=19.8
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++|++|+||||+++.|...+.
T Consensus 58 v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 58 VGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhhh
Confidence 66789999999999999887653
No 284
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.00 E-value=0.3 Score=42.95 Aligned_cols=22 Identities=36% Similarity=0.255 Sum_probs=18.4
Q ss_pred hheeccccCCCchhhHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~a 205 (367)
-+.+.||+|+||||+.+.++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3667899999999999887753
No 285
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.97 E-value=0.26 Score=45.24 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.1
Q ss_pred hhhheeccccCCCchhhHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.+++|.||||+|||.+.+.++..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHhh
Confidence 346999999999999998877654
No 286
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.91 E-value=0.29 Score=42.32 Aligned_cols=20 Identities=30% Similarity=0.124 Sum_probs=17.7
Q ss_pred heeccccCCCchhhHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~ 204 (367)
+.+.|++|+||||+...++.
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 66789999999999988876
No 287
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=85.88 E-value=0.66 Score=39.64 Aligned_cols=46 Identities=24% Similarity=0.218 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcC--CcccchhhHHHHHhhhhhheeccccCCCchhhHH
Q psy4734 155 NDELLEILSETK--DPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQ 200 (367)
Q Consensus 155 ~~~Ll~ils~~~--~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~ 200 (367)
++++++.+.+.. .+...|...-..+.....+++.+|+|+|||.++-
T Consensus 11 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 11 KRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHH
Confidence 356777776532 3445565544444444668889999999997754
No 288
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.81 E-value=0.32 Score=44.66 Aligned_cols=23 Identities=30% Similarity=0.157 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++|+||||+.+.++..+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999887654
No 289
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.81 E-value=0.26 Score=41.52 Aligned_cols=21 Identities=48% Similarity=0.604 Sum_probs=17.8
Q ss_pred hheeccccCCCchhhHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~ 204 (367)
-+.++|++|+||||+++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367899999999999888764
No 290
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=85.76 E-value=0.47 Score=41.49 Aligned_cols=47 Identities=26% Similarity=0.295 Sum_probs=31.2
Q ss_pred hHHHHHHHHhc--CCcccchhhHHHHHhhhhhheeccccCCCchhhHHH
Q psy4734 155 NDELLEILSET--KDPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQT 201 (367)
Q Consensus 155 ~~~Ll~ils~~--~~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~ 201 (367)
++++++.+... ..+..+|...-..+.....+++.+|+|+|||.++-.
T Consensus 28 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 28 YPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence 35677766543 345566765444444455678899999999987543
No 291
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.66 E-value=0.31 Score=39.70 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.1
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+||||+++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 46788999999999988765
No 292
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.62 E-value=0.24 Score=44.05 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.8
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++||||||..+.|++.+.
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 56779999999999999988763
No 293
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=85.58 E-value=0.33 Score=43.06 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=19.7
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.|++|+||||..+.|++.+.
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 45669999999999999988774
No 294
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=85.52 E-value=0.18 Score=49.12 Aligned_cols=21 Identities=33% Similarity=0.238 Sum_probs=17.6
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
++++|++||||||+.+.|++.
T Consensus 261 Iil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGG
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 667899999999998887653
No 295
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.45 E-value=0.24 Score=46.71 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.4
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++||+|+|||++...|++.++
T Consensus 6 i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEECCCcCCHHHHHHHHHHhCc
Confidence 56789999999999998887653
No 296
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=85.43 E-value=0.18 Score=44.78 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=17.6
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.+.|+.||||||+.+.|+..
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 557799999999998887654
No 297
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.43 E-value=0.32 Score=39.35 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=17.5
Q ss_pred hheeccccCCCchhhHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~ 204 (367)
.+.++|++|+|||++++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 367889999999999887653
No 298
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.33 E-value=0.31 Score=39.39 Aligned_cols=20 Identities=35% Similarity=0.333 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+||||+++.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999999987764
No 299
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.29 E-value=0.26 Score=43.35 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=19.8
Q ss_pred hhhheeccccCCCchhhHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..++++.||+|+|||++...|++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3557889999999999977766544
No 300
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=85.25 E-value=0.38 Score=47.32 Aligned_cols=26 Identities=35% Similarity=0.277 Sum_probs=22.1
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
.-++++|++|+||||+...|+..+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44778899999999999999988754
No 301
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=85.20 E-value=0.37 Score=42.25 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.9
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.|.|+.||||||..+.|++.|.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 45679999999999999998873
No 302
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.13 E-value=0.28 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.0
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
++++||+|+|||++...|++.+
T Consensus 13 i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 5678999999999998888765
No 303
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=85.13 E-value=0.34 Score=39.25 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.7
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+||||+++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999999977654
No 304
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=84.99 E-value=0.88 Score=38.78 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=28.8
Q ss_pred hHHHHHHHHhc--CCcccchhhHHHHHhhhhhheeccccCCCchhhHH
Q psy4734 155 NDELLEILSET--KDPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQ 200 (367)
Q Consensus 155 ~~~Ll~ils~~--~~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~ 200 (367)
++++.+.+... ..+...|...-..+.....+++.+|+|+|||.++-
T Consensus 9 ~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 9 KPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHH
Confidence 35666666543 23445565433333334568888999999998743
No 305
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=84.98 E-value=0.33 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.6
Q ss_pred hhhheeccccCCCchhhHHHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+++|+||||+|||++.+.++..+
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999988765
No 306
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=84.98 E-value=0.41 Score=45.06 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.2
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
..++++|++|+||||+...|+..+..
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44778899999999999999988764
No 307
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=84.95 E-value=0.33 Score=40.69 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.1
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+||||+++.|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36788999999999988765
No 308
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=84.95 E-value=0.34 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=18.1
Q ss_pred hheeccccCCCchhhHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~a 205 (367)
-+.++|+.||||||+++.|...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 3567899999999999987653
No 309
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.78 E-value=0.35 Score=40.71 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.7
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..+.++|++|+||||+++.|.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 347889999999999988765
No 310
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=84.70 E-value=0.37 Score=39.10 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.9
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+||||+++.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999999987765
No 311
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=84.68 E-value=0.39 Score=48.33 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=21.6
Q ss_pred hheeccccCCCchhhHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
-++++|.+||||||+.+.|++.++.
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3677899999999999999988753
No 312
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=84.63 E-value=0.31 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.9
Q ss_pred hhheeccccCCCchhhHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~a 205 (367)
.+++|+||+|+|||++.+.++..
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999988654
No 313
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=84.43 E-value=0.3 Score=45.42 Aligned_cols=20 Identities=55% Similarity=0.496 Sum_probs=17.6
Q ss_pred heeccccCCCchhhHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~ 204 (367)
++++|++|+||||+++.|..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 57899999999999999764
No 314
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.36 E-value=0.36 Score=39.39 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.9
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+||||+++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46788999999999987754
No 315
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.30 E-value=0.41 Score=43.56 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=20.3
Q ss_pred hhheeccccCCCchhhHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.-+.++||+|+||||+...++..+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3466789999999999998887553
No 316
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.28 E-value=0.39 Score=39.08 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.8
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+|||++++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36788999999999987764
No 317
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=84.19 E-value=0.35 Score=46.35 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.9
Q ss_pred hheeccccCCCchhhHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~ 204 (367)
.+.++|++|+||||++++|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 367889999999999988763
No 318
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=84.18 E-value=0.39 Score=39.58 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=17.1
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+||||+++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47789999999999988764
No 319
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=84.16 E-value=0.37 Score=39.58 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 46789999999999987764
No 320
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=84.07 E-value=0.4 Score=39.08 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=16.9
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 36788999999999988764
No 321
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=84.06 E-value=0.42 Score=45.42 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=19.7
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.++|+||+||||+++.|...+.
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhh
Confidence 66789999999999999887653
No 322
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=84.04 E-value=0.41 Score=38.92 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+|||++++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999999988765
No 323
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=83.96 E-value=0.36 Score=40.34 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=16.6
Q ss_pred heeccccCCCchhhHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~ 203 (367)
+.++|++|+||||+++.|.
T Consensus 7 i~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6788999999999988765
No 324
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=83.96 E-value=0.41 Score=39.13 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=16.9
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+||||+++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 46788999999999987654
No 325
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=83.94 E-value=0.36 Score=41.52 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=18.3
Q ss_pred hhhheeccccCCCchhhHHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~~ 204 (367)
-.|++|.|++|+||||+...|..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999998665543
No 326
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=83.87 E-value=1.1 Score=40.44 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=30.7
Q ss_pred chHHHHHHHHhcC--CcccchhhHHHHHhhhhhheeccccCCCchhhHHH
Q psy4734 154 SNDELLEILSETK--DPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQT 201 (367)
Q Consensus 154 s~~~Ll~ils~~~--~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~ 201 (367)
-++++++.+.... .+..+|..+-..+.....+++.+|+|+|||.++-.
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHH
Confidence 3567777776542 24456655443333335588899999999987543
No 327
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=83.78 E-value=0.38 Score=41.32 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=16.5
Q ss_pred ccchhhHHHHHhhhh--hheeccccCCCchhhHHHHH
Q psy4734 169 LRVQPHLKKIFEVRH--GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 169 ~~lq~~l~k~~~~~~--~v~~~g~~gsGKTt~~~~L~ 203 (367)
...+.|+.++..... -+.++|++|+|||++++.+.
T Consensus 15 ~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 15 VPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYT 51 (204)
T ss_dssp ---------------CEEEEEEESTTSSHHHHHHHHH
T ss_pred ccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHH
Confidence 345567776655443 46778999999999986654
No 328
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=83.75 E-value=0.42 Score=39.45 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=17.4
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..+.++|++|+||||+++.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 347788999999999987654
No 329
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=83.74 E-value=0.4 Score=39.11 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+|||++++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 46788999999999987765
No 330
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=83.70 E-value=0.35 Score=39.41 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=16.4
Q ss_pred heeccccCCCchhhHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~ 203 (367)
+.++|++|+|||++++.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6788999999999987764
No 331
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=83.65 E-value=0.41 Score=39.17 Aligned_cols=19 Identities=47% Similarity=0.520 Sum_probs=16.6
Q ss_pred heeccccCCCchhhHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~ 203 (367)
+.++|++|+|||++++.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999988764
No 332
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=83.53 E-value=2.1 Score=39.94 Aligned_cols=129 Identities=12% Similarity=0.061 Sum_probs=72.6
Q ss_pred hhhhhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccccccccchHHHHHHH
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFRE 259 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~~~W~dGil~~~~r~ 259 (367)
...+..+|.||+|.||++..+.+++++.... ........++ | ..+|. .++..
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~----------~-----~~~~~-----~l~~~ 67 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQG--------FEEHHTFSID----------P-----NTDWN-----AIFSL 67 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHT--------CCEEEEEECC----------T-----TCCHH-----HHHHH
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCC--------CCeeEEEEec----------C-----CCCHH-----HHHHH
Confidence 4456677889999999999999888765221 0011111111 1 12232 22222
Q ss_pred HhcC-CCCCceEEEEcCC---CChHhhhhhhhccCCCCceeecccceeecCCCCeEEEecCCCC------ccCcchhhce
Q psy4734 260 MAVS-TTPDRKWIMFDGP---IDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLE------FASPATVSRV 329 (367)
Q Consensus 260 ~~~~-~~~~~~wivfDG~---~d~~wie~lnsvlddn~~l~L~~ge~i~l~~~~~~ifE~~~l~------~asPatvsRc 329 (367)
+... --.+++.+|+|.. +...-.+.|-..+.+ .|++..+||.++++. ..-|+..|||
T Consensus 68 ~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~-------------p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~ 134 (343)
T 1jr3_D 68 CQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGL-------------LHDDLLLIVRGNKLSKAQENAAWFTALANRS 134 (343)
T ss_dssp HHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTT-------------CBTTEEEEEEESCCCTTTTTSHHHHHHTTTC
T ss_pred hcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhc-------------CCCCeEEEEEcCCCChhhHhhHHHHHHHhCc
Confidence 2211 1245799999954 333333444333322 356777888887753 3556778999
Q ss_pred eeEEecccCCchHHHHHHHHHHh
Q psy4734 330 GMIYFELKCISWTTFFLSYQNEL 352 (367)
Q Consensus 330 g~v~~~~~~~~~~~~~~swl~~~ 352 (367)
.++.+.+-.- .-+..|+...
T Consensus 135 ~~~~~~~l~~---~~l~~~l~~~ 154 (343)
T 1jr3_D 135 VQVTCQTPEQ---AQLPRWVAAR 154 (343)
T ss_dssp EEEEECCCCT---THHHHHHHHH
T ss_pred eEEEeeCCCH---HHHHHHHHHH
Confidence 9999876542 3345566543
No 333
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=83.52 E-value=0.21 Score=42.93 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.1
Q ss_pred heeccccCCCchhhHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~ 204 (367)
+.++|++|+||||+++.|..
T Consensus 29 v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 29 VAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEECTTSSHHHHHTTTCC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 67889999999999887653
No 334
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.44 E-value=0.44 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.8
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.+.||+|+|||++...|++.++
T Consensus 5 i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEECcchhhHHHHHHHHHHHCC
Confidence 56789999999999999887764
No 335
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=83.43 E-value=0.75 Score=43.64 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=26.7
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCC
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS 231 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka 231 (367)
-+.++|++|+||||+...|+.++... +.+|.....+|.+
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~---------g~kV~vi~~Dp~~ 119 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIER---------GHRVAVLAVDPSS 119 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT---------TCCEEEEEEC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC---------CCceEEEecCCCC
Confidence 46778999999999999988877432 2356555566554
No 336
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=83.36 E-value=0.46 Score=47.38 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=19.9
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+.++||+||||||++++|+..+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 346688999999999999987654
No 337
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=83.29 E-value=0.55 Score=40.86 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=20.1
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
..++||.|+||||++..+.-++..
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 456799999999999998877754
No 338
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=83.86 E-value=0.23 Score=42.56 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=26.4
Q ss_pred CCcccchhhHHHHHhhhh--hheeccccCCCchhhHHHHH
Q psy4734 166 KDPLRVQPHLKKIFEVRH--GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 166 ~~~~~lq~~l~k~~~~~~--~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-+....+|+.+.+.... .+.++|++|+|||++++.+.
T Consensus 12 ~~~~~~~~~m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 12 SGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 334455667777654443 46778999999999987664
No 339
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=83.25 E-value=0.43 Score=39.39 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=17.6
Q ss_pred hheeccccCCCchhhHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~ 204 (367)
.+.++|++|+||||+++.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 477899999999999877653
No 340
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.25 E-value=0.45 Score=41.08 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.6
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..++++|++|+|||++++.|.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 347889999999999987764
No 341
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=83.23 E-value=0.44 Score=42.74 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.2
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+-+.|+|||||||..+.|++.+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 5578999999999999988766
No 342
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.22 E-value=0.48 Score=45.34 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.1
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
..++||+|+||||++.++.-++.
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 34679999999999999887763
No 343
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=83.16 E-value=0.47 Score=38.62 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=16.8
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+|||++++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999999987764
No 344
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=83.00 E-value=0.47 Score=39.57 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.1
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+|||++++.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47889999999999987764
No 345
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=82.94 E-value=0.42 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=21.4
Q ss_pred hhhhheeccccCCCchhhHHHHHHHH
Q psy4734 181 VRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 181 ~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
...|++|.||||+|||.+.+.++..+
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred CCceEEEecCCCCCchHHHHHHHHHh
Confidence 45789999999999999888776543
No 346
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=82.80 E-value=0.52 Score=46.56 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.1
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-++++|.+||||||+.+.|++.+.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 467889999999999999988775
No 347
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=82.75 E-value=0.49 Score=39.40 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=17.1
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+||||+++.|.
T Consensus 6 ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36789999999999988764
No 348
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=82.65 E-value=0.98 Score=39.58 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=30.3
Q ss_pred hHHHHHHHHhc--CCcccchhhHHHHHhhhhhheeccccCCCchhhHHH
Q psy4734 155 NDELLEILSET--KDPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQT 201 (367)
Q Consensus 155 ~~~Ll~ils~~--~~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~ 201 (367)
.+.+.+.+... ..+..+|...-..+.....+++.+|+|+|||.++-.
T Consensus 33 ~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 33 SKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp CHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHH
Confidence 35666777543 234455655444444456688899999999987543
No 349
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=82.61 E-value=0.44 Score=39.32 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=17.3
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
--+.++|++|+|||++++.|.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 347789999999999987754
No 350
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=82.60 E-value=0.53 Score=47.95 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=35.6
Q ss_pred ecchHHHHHHHHhcCCccc-ch-hhHHHHHh-hh-------hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 152 FLSNDELLEILSETKDPLR-VQ-PHLKKIFE-VR-------HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 152 f~s~~~Ll~ils~~~~~~~-lq-~~l~k~~~-~~-------~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
.+|-..+.+.+..+..+.. .. +.+.+... .. .-+.+.|.+||||||+.+.|++.+..
T Consensus 356 ~iSgt~ir~~l~~g~~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 356 NISGTELRRRLRSGAHIPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHhccCCCCcccccccccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 3555667777776554422 11 12333221 11 23667899999999999999998864
No 351
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=82.57 E-value=1 Score=39.72 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=29.2
Q ss_pred HHHHHHHHhc--CCcccchhhHHHHHhhhhhheeccccCCCchhhHH
Q psy4734 156 DELLEILSET--KDPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQ 200 (367)
Q Consensus 156 ~~Ll~ils~~--~~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~ 200 (367)
+++++.+.+. ..+..+|...-..+.....+++.+|+|+|||.++-
T Consensus 38 ~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 38 SRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFS 84 (245)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 4566666543 33555666544444444558889999999998753
No 352
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=82.56 E-value=0.51 Score=38.58 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.4
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..+.++|++|+|||++++.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 347889999999999987763
No 353
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=82.50 E-value=0.39 Score=41.85 Aligned_cols=24 Identities=17% Similarity=0.075 Sum_probs=20.6
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
-+.+.|+.||||||+.+.|++.++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 366779999999999999998763
No 354
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=82.48 E-value=0.51 Score=38.81 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=17.6
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
-.+.++|++|+||||+++.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347889999999999988764
No 355
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=82.43 E-value=0.47 Score=39.13 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=17.4
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-+.++|++|+|||++++.+.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 347788999999999987764
No 356
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=82.29 E-value=0.94 Score=44.42 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=22.4
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
..++++|++|+||||+...|+..+...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 357789999999999999998877543
No 357
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=82.29 E-value=0.49 Score=39.03 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.2
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 36788999999999988765
No 358
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=82.26 E-value=0.53 Score=38.23 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=16.5
Q ss_pred heeccccCCCchhhHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~ 203 (367)
+.++|++|+|||++++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5788999999999988764
No 359
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=82.20 E-value=0.52 Score=39.51 Aligned_cols=20 Identities=35% Similarity=0.333 Sum_probs=17.3
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+||||+++.|.
T Consensus 23 ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47788999999999988765
No 360
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=82.16 E-value=0.46 Score=39.97 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=18.0
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..+.++|++|+||||+++.|.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 447889999999999988775
No 361
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=82.09 E-value=0.54 Score=38.99 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.5
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..++++|++|+||||+++.|.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 347889999999999987765
No 362
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=82.08 E-value=0.53 Score=39.46 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=17.5
Q ss_pred hheeccccCCCchhhHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~ 204 (367)
-+.++|++|+|||++++.|..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 377889999999999887653
No 363
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=82.04 E-value=0.47 Score=39.59 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.4
Q ss_pred heeccccCCCchhhHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~ 203 (367)
+.++|++|+|||++++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6788999999999987764
No 364
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=81.99 E-value=0.54 Score=39.61 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=17.6
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
-.+.++|++|+|||++++.|.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHh
Confidence 457889999999999987654
No 365
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=81.98 E-value=0.84 Score=44.84 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=21.6
Q ss_pred hheeccccCCCchhhHHHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
.+++.|++|+|||+++..+.+.+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 56777999999999999888877543
No 366
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=81.98 E-value=0.55 Score=48.37 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.8
Q ss_pred heeccccCCCchhhHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
+.|.|.+||||||+.+.|++.+.
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999998874
No 367
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=81.96 E-value=0.81 Score=42.80 Aligned_cols=45 Identities=20% Similarity=0.092 Sum_probs=34.0
Q ss_pred eeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccce
Q psy4734 186 MVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGE 240 (367)
Q Consensus 186 ~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~ 240 (367)
++.|.+|+||||+...|+.++... +.+|-+...+| +-+...+||.
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~---------G~rVLlvD~D~-~~~l~~~l~~ 62 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARS---------GKKTLVISTDP-AHSLSDSLER 62 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEECCS-SCCHHHHHTS
T ss_pred EEeCCCCchHHHHHHHHHHHHHHC---------CCcEEEEeCCC-CcCHHHHhCC
Confidence 345889999999999999888754 34677788888 5666666663
No 368
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=81.93 E-value=1.1 Score=38.86 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=28.6
Q ss_pred hHHHHHHHHhc--CCcccchhhHHHHHhhhhhheeccccCCCchhhH
Q psy4734 155 NDELLEILSET--KDPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAY 199 (367)
Q Consensus 155 ~~~Ll~ils~~--~~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~ 199 (367)
++++.+.+... ..+...|...-..+.....+++.+|+|+|||.++
T Consensus 22 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 22 DENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 45666666543 2345566554333333456888999999999874
No 369
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=81.92 E-value=0.48 Score=38.96 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47788999999999987764
No 370
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=81.90 E-value=0.56 Score=40.56 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=19.5
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.-+.++|++|+||||++..|...+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347788999999999988877654
No 371
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=81.84 E-value=0.46 Score=46.48 Aligned_cols=20 Identities=55% Similarity=0.496 Sum_probs=17.4
Q ss_pred heeccccCCCchhhHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~ 204 (367)
+.++|++|+||||++++|..
T Consensus 34 I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 47899999999999988764
No 372
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=81.80 E-value=0.18 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=19.2
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.+.|++||||||..+.|++.+
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 35677999999999998887765
No 373
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.79 E-value=0.56 Score=38.75 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47889999999999987754
No 374
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=81.61 E-value=0.57 Score=38.75 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+|||++++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47889999999999987764
No 375
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=81.55 E-value=0.57 Score=39.72 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-++++|++|+||||+++.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999999987764
No 376
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=81.50 E-value=0.62 Score=45.92 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=22.0
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
.-++++|++|+||||+...|+..+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 34778899999999999999988754
No 377
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=81.39 E-value=0.52 Score=39.46 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=17.3
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-+.++|++|+||||+++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357889999999999987653
No 378
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.33 E-value=0.34 Score=40.35 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.1
Q ss_pred hhhheeccccCCCchhhHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTL 202 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L 202 (367)
...+.++|++|+||||+++.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l 38 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRL 38 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 345788999999999997654
No 379
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=81.28 E-value=0.51 Score=47.65 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=19.3
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++||+||||||++++|+..+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36688999999999999988543
No 380
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=81.18 E-value=0.56 Score=39.28 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36788999999999988765
No 381
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=81.16 E-value=0.57 Score=38.96 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999999987765
No 382
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=81.11 E-value=0.57 Score=38.99 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=17.6
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
--+.++|++|+|||++++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999987764
No 383
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=81.10 E-value=0.61 Score=39.05 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.6
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47788999999999976654
No 384
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=81.02 E-value=0.77 Score=41.48 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+||||+++.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~ 22 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALT 22 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46788999999999988764
No 385
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=80.98 E-value=0.8 Score=42.51 Aligned_cols=26 Identities=35% Similarity=0.247 Sum_probs=21.6
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
.-+.++|++|+||||+...|+..+..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34667899999999999999987754
No 386
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=80.98 E-value=0.71 Score=40.49 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=17.2
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.+.|++|+||||+...++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36678999999999966555433
No 387
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=80.95 E-value=1.2 Score=39.31 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=30.7
Q ss_pred hHHHHHHHHhc--CCcccchhhHHHHHhhhhhheeccccCCCchhhHHH
Q psy4734 155 NDELLEILSET--KDPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQT 201 (367)
Q Consensus 155 ~~~Ll~ils~~--~~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~ 201 (367)
++++.+.+... ..+..+|...-..+.....+++.+|+|+|||.++-.
T Consensus 37 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 37 PANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHH
Confidence 35677777653 234556665444444445688899999999988643
No 388
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=80.88 E-value=1.6 Score=37.75 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=29.6
Q ss_pred hHHHHHHHHhcC--CcccchhhHHHHHhhhhhheeccccCCCchhhHHH
Q psy4734 155 NDELLEILSETK--DPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQT 201 (367)
Q Consensus 155 ~~~Ll~ils~~~--~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~ 201 (367)
++++.+.+.... .+...|...-..+.....+++.+|+|+|||.++-.
T Consensus 22 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~ 70 (220)
T 1t6n_A 22 KPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL 70 (220)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhH
Confidence 467777776532 24555654333333335588889999999987543
No 389
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=80.80 E-value=0.63 Score=38.56 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=16.7
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+|||++++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999999987654
No 390
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=80.69 E-value=0.75 Score=47.34 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=16.4
Q ss_pred HHhhhhhheeccccCCCchhhHHHH
Q psy4734 178 IFEVRHGLMVVGESFGGKTTAYQTL 202 (367)
Q Consensus 178 ~~~~~~~v~~~g~~gsGKTt~~~~L 202 (367)
++..+.-.++.||||+|||+++-.+
T Consensus 201 al~~~~~~lI~GPPGTGKT~ti~~~ 225 (646)
T 4b3f_X 201 ALSQKELAIIHGPPGTGKTTTVVEI 225 (646)
T ss_dssp HHHCSSEEEEECCTTSCHHHHHHHH
T ss_pred HhcCCCceEEECCCCCCHHHHHHHH
Confidence 3333334556799999999865443
No 391
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=80.64 E-value=0.6 Score=39.56 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 25 ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47788999999999987764
No 392
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=80.64 E-value=0.59 Score=41.31 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=17.6
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
--+.++|++|+||||+++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHc
Confidence 347889999999999988765
No 393
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=80.50 E-value=0.65 Score=38.99 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=17.6
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
-.+.++|++|+|||++++.|.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999987754
No 394
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=80.48 E-value=0.57 Score=42.47 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=17.1
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+||||+++.|.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36788999999999988764
No 395
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=80.36 E-value=0.78 Score=43.94 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=19.7
Q ss_pred hheeccccCCCchhhHHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.++++|++|+|||++++.+...+.
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHH
Confidence 357789999999999998876553
No 396
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.35 E-value=0.62 Score=39.23 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=17.6
Q ss_pred hheeccccCCCchhhHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~ 204 (367)
.+.++|++|+||||+++.|..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 478899999999999887653
No 397
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=80.33 E-value=0.55 Score=39.39 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.2
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-+.++|++|+|||++++.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 347789999999999987654
No 398
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=80.29 E-value=1 Score=39.02 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=29.6
Q ss_pred hHHHHHHHHhcC--CcccchhhHHHHHhhhhhheeccccCCCchhhHHH
Q psy4734 155 NDELLEILSETK--DPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQT 201 (367)
Q Consensus 155 ~~~Ll~ils~~~--~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~ 201 (367)
++++.+.+.... .+..+|...-..+.....+++.+|+|+|||.++-.
T Consensus 12 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 12 QPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence 456777775432 34455655444333445678889999999987543
No 399
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=80.29 E-value=0.58 Score=48.04 Aligned_cols=21 Identities=43% Similarity=0.431 Sum_probs=18.2
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+-++||+|+||||++++|+..
T Consensus 106 ~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 106 LGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCChHHHHHHHHhcC
Confidence 567899999999999998754
No 400
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=80.28 E-value=0.68 Score=38.30 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.9
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+|||++++.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47788999999999987654
No 401
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=80.26 E-value=0.88 Score=41.97 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=19.0
Q ss_pred hhheeccccCCCchhhHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~a 205 (367)
..+++.|++|+|||++++.+.+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 56778899999999998876643
No 402
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=80.24 E-value=0.59 Score=38.66 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.8
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999999987764
No 403
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=80.17 E-value=0.67 Score=39.07 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.5
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37788999999999986544
No 404
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=80.12 E-value=0.57 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=18.9
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+-++||+||||||++++|+..+
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5678999999999999987654
No 405
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=80.11 E-value=0.8 Score=42.40 Aligned_cols=26 Identities=31% Similarity=0.206 Sum_probs=21.6
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
..+.++|++|+||||+...|+..+..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34667799999999999999987753
No 406
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=80.05 E-value=0.68 Score=39.30 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+||||+++.|.
T Consensus 10 ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47788999999999987764
No 407
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=80.04 E-value=1.1 Score=45.66 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=31.0
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCc
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSIT 233 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t 233 (367)
-+++.|.+|||||++++.+...+-.... ...|..+.++||...
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sLl~~~s-------P~ev~lilIDpKg~e 258 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSILFKST-------PSEARLIMIDPKMLE 258 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTCC-------TTTEEEEEECSSSHH
T ss_pred eeEEECCCCCCHHHHHHHHHHHHHHhCC-------CcceEEEEeCCChhh
Confidence 3677899999999999998766542211 124778889999643
No 408
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=80.03 E-value=0.29 Score=45.84 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=18.1
Q ss_pred hheeccccCCCchhhHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~a 205 (367)
.+.++|++|+||||+++.|...
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 4678899999999999987643
No 409
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=79.71 E-value=0.64 Score=38.57 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=16.9
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 46788999999999987764
No 410
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=79.69 E-value=0.59 Score=47.90 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+.++|++||||||++++++..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC
T ss_pred EEEECCCCChHHHHHHHHhCC
Confidence 678899999999999998754
No 411
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=79.68 E-value=0.72 Score=38.72 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.4
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
--+.++|++|+|||++++.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 347889999999999987654
No 412
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=79.68 E-value=1.5 Score=39.16 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=30.1
Q ss_pred hHHHHHHHHhcC--CcccchhhHHHHHhhhhhheeccccCCCchhhHHH
Q psy4734 155 NDELLEILSETK--DPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQT 201 (367)
Q Consensus 155 ~~~Ll~ils~~~--~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~ 201 (367)
++.+.+.+..-. .+..+|...-..+.....+++.+|+|+|||.++-.
T Consensus 51 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~ 99 (249)
T 3ber_A 51 TDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 99 (249)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHH
Confidence 356666665432 34556655444444446688899999999987543
No 413
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=79.66 E-value=0.57 Score=47.79 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+-++||+||||||++++|+..+
T Consensus 373 ~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 373 TALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCc
Confidence 5578999999999999877543
No 414
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=79.66 E-value=1.4 Score=40.22 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=26.5
Q ss_pred HHHHHHHhc--CCcccchhhHHHHHhhhhhheeccccCCCchhhHHH
Q psy4734 157 ELLEILSET--KDPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQT 201 (367)
Q Consensus 157 ~Ll~ils~~--~~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~ 201 (367)
++.+.+..- ..+...|...-..+.....+++.+|+|+|||.++-.
T Consensus 4 ~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~ 50 (337)
T 2z0m_A 4 KIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAI 50 (337)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHH
Confidence 444555432 223344544333333445688899999999987644
No 415
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=79.58 E-value=0.68 Score=39.31 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.3
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-+.++|++|+|||++++.|.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 457889999999999987653
No 416
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=79.56 E-value=0.65 Score=44.18 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=24.0
Q ss_pred HHHHHhhhhh--heeccccCCCchhhHHHHHHHH
Q psy4734 175 LKKIFEVRHG--LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 175 l~k~~~~~~~--v~~~g~~gsGKTt~~~~L~~al 206 (367)
+..++....| +-++|++|+||||++++++...
T Consensus 62 ld~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 62 IDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp HHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555555555 5678999999999999987653
No 417
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=79.53 E-value=0.76 Score=39.85 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=18.5
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.++|++|+||||++..+....
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 36778999999999988776543
No 418
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=79.53 E-value=0.73 Score=38.66 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=17.5
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-+.++|++|+|||++++.|.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 347889999999999987764
No 419
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=79.41 E-value=0.57 Score=40.03 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=17.1
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+|||++++.+.
T Consensus 27 ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37788999999999988764
No 420
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=79.41 E-value=0.74 Score=38.71 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=17.4
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
--+.++|++|+|||++++.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 347789999999999987764
No 421
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=79.34 E-value=0.7 Score=39.40 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=17.4
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-+.++|++|+|||++++.|.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~ 29 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFS 29 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 347889999999999987764
No 422
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.33 E-value=0.75 Score=38.93 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=17.4
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
-.+.++|++|+|||++++.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~ 49 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347888999999999987764
No 423
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=79.33 E-value=0.75 Score=38.74 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 47788999999999987764
No 424
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=79.32 E-value=0.7 Score=39.02 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=18.1
Q ss_pred hhhheeccccCCCchhhHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-.+.++|++|+|||++++.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHh
Confidence 3457889999999999987764
No 425
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=79.19 E-value=0.56 Score=40.05 Aligned_cols=20 Identities=45% Similarity=0.466 Sum_probs=16.9
Q ss_pred hhheeccccCCCchhhHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTL 202 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L 202 (367)
--+.++|++|+|||++++.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 34788999999999998765
No 426
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=79.18 E-value=0.76 Score=38.73 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.9
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47788999999999987654
No 427
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.13 E-value=0.72 Score=38.86 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=17.6
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
--+.++|++|+|||++++.+.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~ 44 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYA 44 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHh
Confidence 347889999999999987765
No 428
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=79.13 E-value=0.61 Score=47.67 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=18.4
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+-++||+||||||+.++|...+
T Consensus 384 ~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCc
Confidence 6678999999999999876543
No 429
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=79.12 E-value=1.1 Score=45.94 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=26.8
Q ss_pred chhhHHHHHhhhhhheeccccCCCchhhHHHHHHHHHHH
Q psy4734 171 VQPHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDI 209 (367)
Q Consensus 171 lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al~~~ 209 (367)
.|...-.......-+++.|+||+||||++..+..++..+
T Consensus 153 ~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~ 191 (608)
T 1w36_D 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM 191 (608)
T ss_dssp HHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 344433333344456777999999999988887777654
No 430
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=79.11 E-value=1 Score=42.67 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=33.5
Q ss_pred heeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccc
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYG 239 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G 239 (367)
+++.|.+|.||||+.-.|+.++... +.+|-+...+| +-+...+||
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~---------G~rVLlvD~D~-~~~l~~~l~ 73 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK---------GLKVVIVSTDP-AHSLRDIFE 73 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS---------SCCEEEEECCT-TCHHHHHHC
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC---------CCeEEEEeCCC-CCCHHHHhC
Confidence 4455999999999999998888653 34687888888 446666665
No 431
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=79.10 E-value=0.77 Score=38.72 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.4
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-+.++|++|+|||++++.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~ 44 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFS 44 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHh
Confidence 347889999999999987754
No 432
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=79.10 E-value=0.77 Score=38.41 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.|.
T Consensus 17 ~i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47789999999999987764
No 433
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=79.09 E-value=0.72 Score=39.27 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=17.5
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-+.++|++|+|||++++.|.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~ 45 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFV 45 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHH
Confidence 347788999999999987765
No 434
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=79.05 E-value=1.6 Score=38.16 Aligned_cols=46 Identities=26% Similarity=0.230 Sum_probs=30.1
Q ss_pred hHHHHHHHHhcC--CcccchhhHHHHHhhhhhheeccccCCCchhhHH
Q psy4734 155 NDELLEILSETK--DPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQ 200 (367)
Q Consensus 155 ~~~Ll~ils~~~--~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~ 200 (367)
++.+.+.+.... .+..+|...-..+.....+++.+|+|+|||.++-
T Consensus 32 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 32 SRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFS 79 (230)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 456777776532 2455665544444444568889999999998754
No 435
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=79.04 E-value=0.69 Score=38.61 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=17.8
Q ss_pred hhhheeccccCCCchhhHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
...+.++|++|+|||++++.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 3457888999999999987654
No 436
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=78.98 E-value=0.73 Score=43.74 Aligned_cols=22 Identities=41% Similarity=0.294 Sum_probs=18.5
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||+.+.++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999887654
No 437
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=78.96 E-value=0.69 Score=45.49 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=23.8
Q ss_pred HHHHHhhhhh--heeccccCCCchhhHHHHHHHH
Q psy4734 175 LKKIFEVRHG--LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 175 l~k~~~~~~~--v~~~g~~gsGKTt~~~~L~~al 206 (367)
+..++....| +.++||+|+||||++++++...
T Consensus 148 ld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 148 INALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EeeeEEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4445555555 5578999999999999987653
No 438
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=78.92 E-value=0.58 Score=47.28 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=18.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+-++||.|+||||++++|+..+
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 5578999999999999987543
No 439
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=78.86 E-value=0.47 Score=40.54 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=20.2
Q ss_pred hhHHHHHhhhhhheeccccCCCchhhHHHHH
Q psy4734 173 PHLKKIFEVRHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 173 ~~l~k~~~~~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
++..+-++..-.+.++|++|+|||++++.|.
T Consensus 16 ~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 16 PRGSIWSDFLFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp ------CCEEEEEEEEESTTSSHHHHHHHHH
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHH
Confidence 3333334445568899999999999988765
No 440
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=78.82 E-value=0.55 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.6
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+-++||+||||||++++|+..+
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHhhcc
Confidence 5678999999999999977544
No 441
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=78.76 E-value=0.94 Score=43.04 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.1
Q ss_pred hhhee--ccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMV--VGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~--~g~~gsGKTt~~~~L~~al~~ 208 (367)
..+++ .|++|+|||++++.+++.+..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 34777 899999999999988776543
No 442
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=78.56 E-value=0.72 Score=38.64 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=17.3
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..+.++|++|+|||++++.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 347788999999999987654
No 443
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=78.55 E-value=1.3 Score=39.43 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=27.7
Q ss_pred hheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCC
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS 231 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka 231 (367)
-+.+.|.+|+||||+...|+.++. . +.+|.+...+|..
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~-~---------g~~v~vvd~D~~~ 53 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE-D---------NYKVAYVNLDTGV 53 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-T---------TSCEEEEECCSSC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH-C---------CCeEEEEeCCCCc
Confidence 356679999999999999988775 2 2356566666654
No 444
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=78.51 E-value=0.82 Score=38.83 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=17.6
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
-.+.++|++|+|||++++.+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 347888999999999988764
No 445
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=78.36 E-value=0.78 Score=39.48 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=18.1
Q ss_pred hhhheeccccCCCchhhHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-.+.++|++|+|||++++.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 3457889999999999988764
No 446
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=78.35 E-value=4 Score=36.38 Aligned_cols=33 Identities=21% Similarity=0.049 Sum_probs=25.3
Q ss_pred cccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCC
Q psy4734 189 GESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS 231 (367)
Q Consensus 189 g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka 231 (367)
+..|+||||+.-.|+.++. . +.+|-+...+|..
T Consensus 35 ~kGGvGKTT~a~~LA~~la-~---------g~~VlliD~D~~~ 67 (267)
T 3k9g_A 35 IKGGVGKSTSAIILATLLS-K---------NNKVLLIDMDTQA 67 (267)
T ss_dssp SSSSSCHHHHHHHHHHHHT-T---------TSCEEEEEECTTC
T ss_pred CCCCchHHHHHHHHHHHHH-C---------CCCEEEEECCCCC
Confidence 6789999999999998886 2 2357677777764
No 447
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=78.34 E-value=2 Score=36.44 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=42.5
Q ss_pred cccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccceecccc--cccccchHHHHHHHHhcCCCC
Q psy4734 189 GESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSAS--HEWRDGILAKTFREMAVSTTP 266 (367)
Q Consensus 189 g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~~d~~~--~~W~dGil~~~~r~~~~~~~~ 266 (367)
+..|+||||+.-.|+.++... +.+|.+...+|..-. ..+++.-...- -.-...-+..++++.. .
T Consensus 9 ~kgG~GKTt~a~~la~~la~~---------g~~vlliD~D~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~l~----~ 74 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRS---------GYNIAVVDTDPQMSL-TNWSKAGKAAFDVFTAASEKDVYGIRKDL----A 74 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHT---------TCCEEEEECCTTCHH-HHHHTTSCCSSEEEECCSHHHHHTHHHHT----T
T ss_pred CCCCccHHHHHHHHHHHHHHC---------CCeEEEEECCCCCCH-HHHHhcCCCCCcEEecCcHHHHHHHHHhc----C
Confidence 567999999999999988753 235777777765422 22222100000 0001123444444442 3
Q ss_pred CceEEEEcCCCC
Q psy4734 267 DRKWIMFDGPID 278 (367)
Q Consensus 267 ~~~wivfDG~~d 278 (367)
...+||+|+|..
T Consensus 75 ~yD~viiD~~~~ 86 (206)
T 4dzz_A 75 DYDFAIVDGAGS 86 (206)
T ss_dssp TSSEEEEECCSS
T ss_pred CCCEEEEECCCC
Confidence 468999998854
No 448
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=78.23 E-value=0.84 Score=38.91 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=18.1
Q ss_pred hhhheeccccCCCchhhHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..-+.++|++|+|||++++.|.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3457889999999999987764
No 449
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=78.11 E-value=1.2 Score=43.31 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=30.2
Q ss_pred eecchHHHHHHHHhcCCcccchhh-HHHHHhhhhhheeccccCCCchhhHHHHHHHH
Q psy4734 151 FFLSNDELLEILSETKDPLRVQPH-LKKIFEVRHGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 151 ~f~s~~~Ll~ils~~~~~~~lq~~-l~k~~~~~~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
.+.+..++...+........+... +..- .....++++|++|+|||+.++.+...+
T Consensus 22 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~~h~~i~G~tGsGKs~~~~~li~~~ 77 (437)
T 1e9r_A 22 RIVSGGKLKRMTREKAKQVTVAGVPMPRD-AEPRHLLVNGATGTGKSVLLRELAYTG 77 (437)
T ss_dssp CEECHHHHHHHHCCSSCCCEETTEECCGG-GGGGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCceeECcEEcccc-cCcceEEEECCCCCCHHHHHHHHHHHH
Confidence 446667777766432211112110 1111 123446778999999999876665443
No 450
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=78.10 E-value=0.79 Score=40.73 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.0
Q ss_pred hheeccccCCCchhhHHHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~al 206 (367)
-+.+.|++||||||+.+.|++.+
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHc
Confidence 35667999999999999999876
No 451
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.07 E-value=1.2 Score=39.24 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=29.1
Q ss_pred hHHHHHHHHhc--CCcccchhhHHHHHhhhhhheeccccCCCchhhHH
Q psy4734 155 NDELLEILSET--KDPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQ 200 (367)
Q Consensus 155 ~~~Ll~ils~~--~~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~ 200 (367)
++++.+.+... ..+..+|...-..+.....+++.+|+|+|||.++-
T Consensus 38 ~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 38 KESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 45677776543 23555665543333334558889999999998743
No 452
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=77.99 E-value=0.81 Score=38.73 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=18.4
Q ss_pred hhhheeccccCCCchhhHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..-+.++|++|+|||++++.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3457889999999999988765
No 453
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=77.93 E-value=0.77 Score=38.81 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=17.7
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
-.+.++|++|+|||++++.|.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 347889999999999988764
No 454
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.92 E-value=0.81 Score=39.18 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=18.3
Q ss_pred hhhheeccccCCCchhhHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
+..+.++|++|+|||++++.|.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~ 46 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFS 46 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHh
Confidence 3458889999999999987765
No 455
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=77.89 E-value=0.87 Score=39.04 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.3
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-+.++|++|+|||++++.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 347788999999999987654
No 456
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=77.86 E-value=0.58 Score=38.91 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=9.2
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-+.++|++|+|||++++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEEECCCCC----------
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347889999999999988765
No 457
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=77.84 E-value=0.69 Score=39.91 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=18.3
Q ss_pred hhhheeccccCCCchhhHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.--+.++|++|+|||++++.+.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~ 49 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 3457889999999999988765
No 458
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=77.76 E-value=0.72 Score=41.89 Aligned_cols=20 Identities=55% Similarity=0.544 Sum_probs=17.1
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.++++|.+|+||||+++.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47889999999999988753
No 459
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=77.74 E-value=0.74 Score=38.40 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=17.5
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..+.++|++|+|||++++.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~ 42 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFS 42 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 347889999999999987764
No 460
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=77.47 E-value=0.99 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.9
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.|.+||||||+.+.|++.+..
T Consensus 375 I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 375 VWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEccCCCCCCHHHHHHHHHHHhhh
Confidence 667899999999999999988764
No 461
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=77.40 E-value=0.58 Score=48.04 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+-++||+|+||||++++|+..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6788999999999999887543
No 462
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=77.38 E-value=0.68 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=18.3
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+-++||+||||||++++|+..+
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5578999999999999877543
No 463
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=77.36 E-value=0.81 Score=38.47 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=17.8
Q ss_pred hhhheeccccCCCchhhHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..-+.++|++|+|||++++.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3457889999999999987654
No 464
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=77.35 E-value=0.68 Score=47.47 Aligned_cols=22 Identities=45% Similarity=0.504 Sum_probs=18.7
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
+.++||+|+||||++++|+..+
T Consensus 120 ~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 120 VGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 6678999999999999987543
No 465
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=77.32 E-value=0.87 Score=39.14 Aligned_cols=24 Identities=29% Similarity=0.265 Sum_probs=18.9
Q ss_pred hhhhhheeccccCCCchhhHHHHH
Q psy4734 180 EVRHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 180 ~~~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
+..--++++|++|+|||++++.|.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~ 46 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYT 46 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHh
Confidence 344558889999999999987654
No 466
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=77.27 E-value=0.78 Score=38.91 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=16.4
Q ss_pred hheeccccCCCchhhHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTL 202 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L 202 (367)
-+.++|++|+|||++++.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788899999999998765
No 467
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=77.14 E-value=0.89 Score=38.63 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37789999999999987765
No 468
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=76.73 E-value=0.9 Score=41.51 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+||||+++.|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~ 24 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLIT 24 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46788999999999988764
No 469
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=76.64 E-value=0.87 Score=39.32 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.8
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
--+.++|++|+|||++++.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 347889999999999988765
No 470
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=76.60 E-value=1.4 Score=40.11 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=17.0
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+||||+++.|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~ 24 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLT 24 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46788999999999988764
No 471
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=76.59 E-value=1.1 Score=39.38 Aligned_cols=45 Identities=27% Similarity=0.133 Sum_probs=34.7
Q ss_pred eeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccce
Q psy4734 186 MVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGE 240 (367)
Q Consensus 186 ~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G~ 240 (367)
.+.|.+|+||||+.-.|+.++.+. +.+|-....+|. -+...+||.
T Consensus 4 ~vs~kGGvGKTt~a~~LA~~la~~---------g~~VlliD~D~~-~~l~~~lg~ 48 (254)
T 3kjh_A 4 AVAGKGGVGKTTVAAGLIKIMASD---------YDKIYAVDGDPD-SCLGQTLGL 48 (254)
T ss_dssp EEECSSSHHHHHHHHHHHHHHTTT---------CSCEEEEEECTT-SCHHHHTTC
T ss_pred EEecCCCCCHHHHHHHHHHHHHHC---------CCeEEEEeCCCC-cChHHHhCC
Confidence 346889999999999999888643 347888888986 666677764
No 472
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.55 E-value=2.1 Score=39.44 Aligned_cols=46 Identities=15% Similarity=0.321 Sum_probs=29.3
Q ss_pred HHHHHHHHhcC--Ccccchhh-HHHHHhhhhhheeccccCCCchhhHHH
Q psy4734 156 DELLEILSETK--DPLRVQPH-LKKIFEVRHGLMVVGESFGGKTTAYQT 201 (367)
Q Consensus 156 ~~Ll~ils~~~--~~~~lq~~-l~k~~~~~~~v~~~g~~gsGKTt~~~~ 201 (367)
+.+.+.+.... .+...|.. +..++.....+++.+|+|+|||.++-.
T Consensus 15 ~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~ 63 (367)
T 1hv8_A 15 DNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAI 63 (367)
T ss_dssp HHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHH
Confidence 45666665432 34445544 334455546788889999999988544
No 473
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=76.54 E-value=0.94 Score=38.56 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=18.0
Q ss_pred hhhheeccccCCCchhhHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
+--+.++|++|+|||++++.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~ 46 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFS 46 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3457889999999999987654
No 474
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=76.47 E-value=0.7 Score=38.83 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=17.4
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
--+.++|++|+|||++++.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~ 42 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLK 42 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 457889999999999977654
No 475
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=76.47 E-value=0.89 Score=39.71 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=17.5
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-+.++|++|+|||++++.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 457889999999999987653
No 476
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=76.47 E-value=1.1 Score=43.89 Aligned_cols=26 Identities=31% Similarity=0.206 Sum_probs=21.9
Q ss_pred hhheeccccCCCchhhHHHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
..++++|++|+||||+...|+..+..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34677899999999999999988753
No 477
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=76.36 E-value=2 Score=46.81 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=38.1
Q ss_pred hHHHHHHHHhcCCcccchhhHHHHHh----------hhhhheeccccCCCchhhHHHHHHHHHHHH
Q psy4734 155 NDELLEILSETKDPLRVQPHLKKIFE----------VRHGLMVVGESFGGKTTAYQTLADSLTDIA 210 (367)
Q Consensus 155 ~~~Ll~ils~~~~~~~lq~~l~k~~~----------~~~~v~~~g~~gsGKTt~~~~L~~al~~~~ 210 (367)
+++..+... ++....+.||++.+-+ ...++++.|++|+|||+..+.+...|....
T Consensus 108 ~~~~~~~Y~-g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~yLa~~~ 172 (1052)
T 4anj_A 108 SSETIKSYQ-GKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESY 172 (1052)
T ss_dssp SHHHHHHHT-TCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhc-CCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 456666654 4445557788665422 235588889999999999998887776554
No 478
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.29 E-value=1.1 Score=45.01 Aligned_cols=18 Identities=33% Similarity=0.246 Sum_probs=16.2
Q ss_pred heeccccCCCchhhHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTL 202 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L 202 (367)
+.++||+||||||+.+++
T Consensus 42 ~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 667899999999999984
No 479
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=76.18 E-value=1.1 Score=42.02 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=18.1
Q ss_pred eeccccCCCchhhHHHHHHHHH
Q psy4734 186 MVVGESFGGKTTAYQTLADSLT 207 (367)
Q Consensus 186 ~~~g~~gsGKTt~~~~L~~al~ 207 (367)
.++||.|+|||+++..+.-++.
T Consensus 27 ~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp EEECCTTSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhc
Confidence 4679999999999998766553
No 480
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=75.82 E-value=1 Score=37.87 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=17.6
Q ss_pred hheeccccCCCchhhHHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLAD 204 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~~ 204 (367)
.+.++|++|+|||++++.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 477889999999999887653
No 481
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=75.67 E-value=2.6 Score=39.75 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcC--CcccchhhHHHHHhhhhhheeccccCCCchhhHHH
Q psy4734 155 NDELLEILSETK--DPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQT 201 (367)
Q Consensus 155 ~~~Ll~ils~~~--~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~~ 201 (367)
++++.+.+.... .+...|...-..+.....+++.+|+|+|||.++-.
T Consensus 29 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~ 77 (400)
T 1s2m_A 29 KRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVI 77 (400)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHH
Confidence 356777776432 34555655433333445588899999999987544
No 482
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=75.65 E-value=0.97 Score=38.31 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=17.1
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
.-++++|++|+|||++++.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~ 41 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVF 41 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347889999999999977543
No 483
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=75.57 E-value=1.2 Score=42.46 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=19.5
Q ss_pred heeccccCCCchhhHHHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTD 208 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~ 208 (367)
+.+.||+|+||||+...++..+..
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 567799999999998888766543
No 484
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=75.55 E-value=1 Score=40.70 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.9
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
.+.++|++|+||||+++.|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~ 26 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999999988764
No 485
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=75.38 E-value=0.98 Score=46.32 Aligned_cols=21 Identities=38% Similarity=0.333 Sum_probs=18.0
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+-++||.|+||||++++|+..
T Consensus 385 ~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 385 IGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 557899999999999998754
No 486
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=75.36 E-value=1 Score=40.23 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=17.5
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
-.|.++|.+|+||||+++.+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 347889999999999987764
No 487
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=75.31 E-value=1.1 Score=38.34 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=18.2
Q ss_pred hhhheeccccCCCchhhHHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L~ 203 (367)
..-+.++|++|+|||++++.+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~ 50 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFK 50 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHh
Confidence 3457889999999999988764
No 488
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=75.30 E-value=1.6 Score=40.20 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=30.1
Q ss_pred hHHHHHHHHhc--CCcccchhhHHHHHhhh--hhheeccccCCCchhhHH
Q psy4734 155 NDELLEILSET--KDPLRVQPHLKKIFEVR--HGLMVVGESFGGKTTAYQ 200 (367)
Q Consensus 155 ~~~Ll~ils~~--~~~~~lq~~l~k~~~~~--~~v~~~g~~gsGKTt~~~ 200 (367)
++.+++.+... ..+..+|...-..+... ..+++.+|+|||||.++-
T Consensus 100 ~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~ 149 (300)
T 3fmo_B 100 KPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149 (300)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHH
Confidence 45677777653 34555666544443332 568888999999998853
No 489
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=75.28 E-value=0.99 Score=45.52 Aligned_cols=21 Identities=38% Similarity=0.333 Sum_probs=17.9
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+-++||.||||||++++|+..
T Consensus 315 ~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 315 IGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 557899999999999987754
No 490
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=75.25 E-value=1.7 Score=42.54 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=29.4
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCC
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKS 231 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka 231 (367)
..++++|++|+||||+.-.|+.++.... +.+|.+...+|-.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~--------G~kVllvd~D~~r 141 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKH--------KKKVLVVSADVYR 141 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTS--------CCCEEEEECCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhc--------CCeEEEEecCCCC
Confidence 4577889999999999999998886431 2356666556543
No 491
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=75.22 E-value=0.52 Score=47.91 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=17.7
Q ss_pred heeccccCCCchhhHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADS 205 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~a 205 (367)
+-++||+||||||+.+++...
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTS
T ss_pred EEEECCCCChHHHHHHHHhcC
Confidence 567899999999999886644
No 492
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=75.20 E-value=1.1 Score=38.38 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.9
Q ss_pred hheeccccCCCchhhHHHHH
Q psy4734 184 GLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 184 ~v~~~g~~gsGKTt~~~~L~ 203 (367)
-+.++|++|+|||++++.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~ 30 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYT 30 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36788999999999987664
No 493
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=75.15 E-value=1.5 Score=41.73 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=36.8
Q ss_pred hhHHHHHhhh-hh-heeccccCCCchhhHHHHHHHHH--HHHhhhccccccceeEEEEeCCCCCccccccc
Q psy4734 173 PHLKKIFEVR-HG-LMVVGESFGGKTTAYQTLADSLT--DIAAKKSATMKEFKTGYKIINPKSITMGQLYG 239 (367)
Q Consensus 173 ~~l~k~~~~~-~~-v~~~g~~gsGKTt~~~~L~~al~--~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G 239 (367)
+.+..+.+.. +. +++.|.+|.||||+.-.|+.++. .. +.+|-+...+|. -+...+||
T Consensus 7 ~~l~~l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~---------G~rVLLvD~D~~-~~l~~~lg 67 (354)
T 2woj_A 7 PNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQP---------NKQFLLISTDPA-HNLSDAFG 67 (354)
T ss_dssp SSCHHHHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCT---------TSCEEEEECCSS-CCHHHHHT
T ss_pred ccHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC---------CCeEEEEECCCC-CCHHHHhC
Confidence 3444554422 22 34458999999999999998887 43 235777777774 55555555
No 494
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.12 E-value=1.1 Score=41.75 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.2
Q ss_pred heeccccCCCchhhHHHHHHHH
Q psy4734 185 LMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al 206 (367)
..++|+.|+|||+++.++.-++
T Consensus 27 ~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 27 TAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEECCTTTCSTHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 4577999999999999987543
No 495
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=74.93 E-value=1.2 Score=41.14 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=19.5
Q ss_pred hhheeccccCCCchhhHHHHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSL 206 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al 206 (367)
..+++.|++|+|||++++.+.+.+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 467788999999999988776543
No 496
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=74.78 E-value=1.7 Score=41.17 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=31.0
Q ss_pred hHHHHHHHHhc--CCcccchhhHHHHHhhhhhheeccccCCCchhhHH
Q psy4734 155 NDELLEILSET--KDPLRVQPHLKKIFEVRHGLMVVGESFGGKTTAYQ 200 (367)
Q Consensus 155 ~~~Ll~ils~~--~~~~~lq~~l~k~~~~~~~v~~~g~~gsGKTt~~~ 200 (367)
++.+.+.+... ..+..+|...-..+.....+++.+|+|+|||.++-
T Consensus 23 ~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 70 (417)
T 2i4i_A 23 GEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFL 70 (417)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHH
Confidence 45677776543 34556676654444455668889999999998654
No 497
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=74.69 E-value=1.5 Score=41.04 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=32.0
Q ss_pred heeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCCCCccccccc
Q psy4734 185 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYG 239 (367)
Q Consensus 185 v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpka~t~~~l~G 239 (367)
+++.|.+|.||||+.-.|+.++.+. +.+|-+...+|. -+..++||
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~---------G~rVllvD~D~~-~~l~~~l~ 66 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKV---------RSSVLLISTDPA-HNLSDAFG 66 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTS---------SSCEEEEECCTT-CHHHHHHS
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHC---------CCeEEEEECCCC-cCHHHHhC
Confidence 3445899999999999999888643 346777777776 45444544
No 498
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=74.66 E-value=0.78 Score=38.42 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.3
Q ss_pred hhhheeccccCCCchhhHHHH
Q psy4734 182 RHGLMVVGESFGGKTTAYQTL 202 (367)
Q Consensus 182 ~~~v~~~g~~gsGKTt~~~~L 202 (367)
...+.++|++|+|||++++.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l 42 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRL 42 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 345788999999999997765
No 499
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=74.61 E-value=2.5 Score=37.73 Aligned_cols=39 Identities=13% Similarity=0.027 Sum_probs=27.0
Q ss_pred hhheeccccCCCchhhHHHHHHHHHHHHhhhccccccceeEEEEeCCC
Q psy4734 183 HGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPK 230 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~~al~~~~~~~~~~~~~~~v~~~~inpk 230 (367)
..+++.|++|+||||+.-.++..+... +.+|.+..+.|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~---------G~~V~v~d~D~q 45 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ---------GVRVMAGVVETH 45 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT---------TCCEEEEECCCT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC---------CCCEEEEEeCCC
Confidence 347778999999999966666555422 335666677773
No 500
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=74.51 E-value=1.2 Score=38.61 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=17.6
Q ss_pred hhheeccccCCCchhhHHHHH
Q psy4734 183 HGLMVVGESFGGKTTAYQTLA 203 (367)
Q Consensus 183 ~~v~~~g~~gsGKTt~~~~L~ 203 (367)
--+.++|++|+|||++++.|.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~ 34 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFT 34 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHh
Confidence 357889999999999987764
Done!