RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4734
(367 letters)
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 271 bits (695), Expect = 4e-82
Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 21/222 (9%)
Query: 155 NDELLEILSETKDPLRVQPH---LKKI------FEVRHGLMVVGESFGGKTTAYQTLADS 205
+ +++ L + LKK + + L++VG++ GKT ++T+ D+
Sbjct: 887 SKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDA 946
Query: 206 LTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVSTT 265
+ +I+ K +T LYG A+ EWRDG+ R + T
Sbjct: 947 MAI--------FDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDIT 998
Query: 266 ----PDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIFECENLEFA 321
R W++FD +D ++E MN+VLDDNK L L NGE + + ++FE +NL+
Sbjct: 999 GTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHT 1058
Query: 322 SPATVSRVGMIYFELKCISWTTFFLSYQNELKEKLNEEQFEM 363
+PAT++R G+++F S ++ N+ E L+ +
Sbjct: 1059 TPATITRCGLLWFSTDVCSISSKIDHLLNKSYEALDNKLSMF 1100
Score = 215 bits (550), Expect = 2e-62
Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 1 MQDILDIWLQVQGTWMYLEPIF-SSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHIL 59
+ +I W++VQ W+ L I + DI +P E+ FK++ +K I + +
Sbjct: 294 LSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTI 353
Query: 60 QATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLR 119
+ + + L++I+ L+ +LE++R FPRF+FL ND+LL+I+ K +
Sbjct: 354 EVIHIPNFDTTLKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQ 413
Query: 120 VQPHLKKIFEA 130
V +KK+F +
Sbjct: 414 VSKFMKKMFGS 424
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 219 bits (560), Expect = 6e-64
Identities = 48/131 (36%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
Query: 1 MQDILDIWLQVQGTWMYLEPIFS-SEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHIL 59
++ +LD+W+ VQ W+YLE IFS S DI + +P ES FK+++ + I+ V+ P IL
Sbjct: 235 VRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIAILKKVSGAPLIL 294
Query: 60 QATEMEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLR 119
+ +E + + + + +L +QK L +YLE++R F RF+F+ +++LLEI+ +KD ++
Sbjct: 295 EVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDIIK 354
Query: 120 VQPHLKKIFEA 130
+Q H +K+F
Sbjct: 355 IQKHFRKMFAG 365
Score = 210 bits (537), Expect = 6e-61
Identities = 65/189 (34%), Positives = 113/189 (59%), Gaps = 11/189 (5%)
Query: 175 LKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITM 234
L +I + HG+M+VG S GGKTT+++ +++ + K+ +++PK+IT
Sbjct: 899 LHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQ--------VDNIKSEAHVMDPKAITK 950
Query: 235 GQLYGEFDSASHEWRDGILAKTFREMAVST---TPDRKWIMFDGPIDAVWIENMNTVLDD 291
QL+G D + EW DG+ T R + + + R WI+FDG +D W+EN+N++LDD
Sbjct: 951 DQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDD 1010
Query: 292 NKKLCLINGEIIKMSNTMNLIFECENLEFASPATVSRVGMIYFELKCISWTTFFLSYQNE 351
NK L L NGE + + N + ++FE ++L++A+ AT+SR GM++F + ++ F +Y +
Sbjct: 1011 NKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMVWFSEEILTTQMIFQNYLDT 1070
Query: 352 LKEKLNEEQ 360
L + + Q
Sbjct: 1071 LSNEPFDPQ 1079
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 4e-09
Identities = 70/448 (15%), Positives = 143/448 (31%), Gaps = 140/448 (31%)
Query: 2 QDILDIWLQ-------VQGTWMYLEPIFSSE---DIMRQMPEESRNFKTVDQIWKTIMLF 51
+DIL ++ + + I S E I+ S + W
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL---FW----TL 71
Query: 52 VNKDPHILQATEMEDMLK---NFNKCNLMLELIQKGLN--DYLEKK-RLF-----FPRFF 100
++K ++Q +E++L+ F + E Q + Y+E++ RL+ F ++
Sbjct: 72 LSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 101 FLSNDELLEILSETKDPL-RVQPHLKKIFEASMALISG-----LVA------TLNLLFFP 148
L++ + L ++P K + + G + +
Sbjct: 131 VSRLQPYLKL----RQALLELRPA-KNVLIDGVL---GSGKTWVALDVCLSYKVQCKMDF 182
Query: 149 RFFFLS------NDELLEIL----------------SETKDPLR---VQPHLKKIFEVR- 182
+ F+L+ + +LE+L + LR +Q L+++ + +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 183 --HGLMV--------VGESFGGK-----TTAYQTLADSLTDIAAKKSATMKEFKTGY--- 224
+ L+V +F TT ++ + D L A ++
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPD 301
Query: 225 ---------------------KIINPKSITM-GQLYGEFDSASHEWRDGILAK--TFREM 260
NP+ +++ + + + W+ K T E
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 261 AVST-TPD--RKWIMFDG----PIDAVWIENMNTVLDDNKKLCLINGEIIKMSNTMNLIF 313
+++ P RK MFD P I L LI ++IK S+ M ++
Sbjct: 362 SLNVLEPAEYRK--MFDRLSVFPPS-AHIP--------TILLSLIWFDVIK-SDVMVVVN 409
Query: 314 ECEN---LEFASPATVSRVGMIYFELKC 338
+ +E + + IY ELK
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKV 437
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 6e-08
Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 24/123 (19%)
Query: 234 MG-QLYGEFDSASHEWR--DGILAKTF----REMAVSTTPDRKWIMFDGPIDAVWIENM- 285
MG LY +A W D T+ ++ V P I F G EN
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI-VINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 286 ----NTVLDDNKKLCLINGEIIKMSNTMNLIFECEN--L---EFASPA--TVSRVGMIYF 334
T++D K I EI + ++ + F E L +F PA + + +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINE--HSTSYTFRSEKGLLSATQFTQPALTLMEKA--AFE 1745
Query: 335 ELK 337
+LK
Sbjct: 1746 DLK 1748
Score = 37.7 bits (87), Expect = 0.007
Identities = 53/404 (13%), Positives = 102/404 (25%), Gaps = 193/404 (47%)
Query: 25 EDIMRQMPEESRNFKTVDQ------IWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLML 78
E + +PE + F D+ + + +V ++ +E +K
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV--------SSLVEP-----SKVGQFD 81
Query: 79 ELIQKGLNDYLEKKRLFFPRFFFLSND------ELLEILSETKDPLRVQPHLKKIFEASM 132
+++ L + F + ND +LL+ ++ + +K A +
Sbjct: 82 QVLNLCLTE--------FENCYLEGNDIHALAAKLLQ--ENDTTLVKTKELIKNYITARI 131
Query: 133 ALISGLVATLNLLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFE-VRHG---LMVV 188
K P + +F V G L+ +
Sbjct: 132 M-------------------------------AKRPFD-KKSNSALFRAVGEGNAQLVAI 159
Query: 189 GESFGG---------------KTTAYQTLADSLTDIAAKK--------SATMKEFKTGYK 225
FGG +T Y L L +A+ K F G
Sbjct: 160 ---FGGQGNTDDYFEELRDLYQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 226 II----NPKS----------------ITMGQL--Y-----------GEFD---------- 242
I+ NP + I + QL Y GE
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 243 ---------SASHEWRD---------------GILA-KTFREMAVST------------- 264
+ + W G+ + + ++
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 265 -TPDRKWIMF---DGPIDAV--WIENMNTVLDDNKKLC--LING 300
+P M + + V ++ N+ L K++ L+NG
Sbjct: 335 PSP-----MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Score = 36.6 bits (84), Expect = 0.014
Identities = 43/327 (13%), Positives = 88/327 (26%), Gaps = 134/327 (40%)
Query: 22 FSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELI 81
FS DI+ P T+ F + ++ + + L E I
Sbjct: 1659 FSILDIVINNPVN----LTI--------HFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 82 QKGLNDYLEKKRLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFEASMALI------ 135
K +N++ + F S LL T QP + A
Sbjct: 1707 FKEINEHSTS-------YTFRSEKGLLSATQFT------QP---ALTLMEKAAFEDLKSK 1750
Query: 136 -----------------SGLVATLNLLFFPRFFFLSNDELLEILSE---------TKDPL 169
+ L + +++ + L+E++ +D L
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSI--------ESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 170 RVQPHLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYK--II 227
+ + + G + S ++L + + +TG+ I+
Sbjct: 1803 GRSNY--GMIAINPGRVAASFS-----------QEALQYVVERVGK-----RTGWLVEIV 1844
Query: 228 N---PKSITMGQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFDGPIDAVWIEN 284
N Q Y + A G + A+ +
Sbjct: 1845 NYNVE-----NQQY-------------VAA--------------------GDLRAL--DT 1864
Query: 285 MNTVLDDNKKLCLINGEIIKMSNTMNL 311
+ VL+ K +II++ +++L
Sbjct: 1865 VTNVLNFIKLQ---KIDIIELQKSLSL 1888
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR
{Magnaporthe oryzae 70-15}
Length = 167
Score = 29.2 bits (65), Expect = 1.2
Identities = 19/88 (21%), Positives = 23/88 (26%), Gaps = 4/88 (4%)
Query: 153 LSNDELLEILSETKDPLRVQPH-LKKIFEVRHG--LMVVGESFGGKTTAYQTLA-DSLTD 208
L L L + +G V G GG T D+L D
Sbjct: 16 LDGARLRAECRRGDGGYSTSVIDLNRYLSNDNGHFRWVSGGGGGGGTATVTVQQGDTLRD 75
Query: 209 IAAKKSATMKEFKTGYKIINPKSITMGQ 236
I + E I N I GQ
Sbjct: 76 IGRRFDCDFHEIARRNNIQNEDLIYPGQ 103
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 30.0 bits (68), Expect = 1.2
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 156 DELLEILSETKDPLRVQPHLKKIFEVRHGLMVVGESFGGKTT 197
+ +LE+L++ +Q +K +M+VG + GGKTT
Sbjct: 135 ESVLEMLAKKNSKTELQLGFRKPA----VIMIVGVNGGGKTT 172
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 29.4 bits (67), Expect = 1.8
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 156 DELLEILSETKDPLRVQPHLKKIFEVRHGLMVVGESFGGKTT 197
+ +LE+L++ +Q +K +M+VG + GGKTT
Sbjct: 78 ESVLEMLAKKNSKTELQLGFRKPA----VIMIVGVNGGGKTT 115
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 29.5 bits (66), Expect = 1.9
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 24/107 (22%)
Query: 152 FLSNDELLEILSETKDPLRVQP-HLKKIFEVRHGLMVVGESFGGKTTAYQTLADSL---- 206
+S +L + E + V + + E RH L+V G + GK+ + LA +
Sbjct: 23 IVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRH-LLVNGATGTGKSVLLRELAYTGLLRG 81
Query: 207 -----TDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEW 248
D K + I+NP +D + W
Sbjct: 82 DRMVIVDP--NGDMLSKFGRDKDIILNP-----------YDQRTKGW 115
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt,
oxidoreductase, gluconate utilization; HET: ATR RES P33;
2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Length = 474
Score = 29.1 bits (66), Expect = 2.4
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 182 RHG--LMVVGESFGGKTTAYQTLADSLTDIAAK 212
G +M GG+ AY +A IAAK
Sbjct: 137 LLGPSMMP-----GGQKEAYDLVAPIFEQIAAK 164
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 29.1 bits (66), Expect = 2.4
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 182 RHG--LMVVGESFGGKTTAYQTLADSLTDIAAK 212
G +M GG+ AY+ +A LT IAA
Sbjct: 147 LKGPSIMP-----GGQKEAYELVAPILTKIAAV 174
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 28.8 bits (65), Expect = 2.8
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 175 LKKIFEVRHG--LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKI 226
L ++ V+ G + +VG + GK+TA + LA L + + ++
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRG 91
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional
isomerase/decarboxylase; lyase, bifunctional enzyme,
multifunctional enzyme decarboxylase; 1.7A {Escherichia
coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Length = 429
Score = 28.7 bits (65), Expect = 3.0
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 15/67 (22%)
Query: 267 DRKWIM---FD-----GPIDAVWIENMNTVLD-DNKKL-CLINGEIIKMSNTMNLIFECE 316
R + D I + D N L +NGE+ + T +LIF
Sbjct: 318 YRPNLRVKSRDGLTPMLS----TIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVP 373
Query: 317 NL-EFAS 322
L + S
Sbjct: 374 FLIAYLS 380
Score = 28.7 bits (65), Expect = 3.5
Identities = 14/68 (20%), Positives = 17/68 (25%), Gaps = 21/68 (30%)
Query: 267 DRKWIM---FD-----GPIDAVWIENMNTVLDDNKKL---CLINGEIIKMSNTMNLIFEC 315
R I D G + L + L ING NT +L
Sbjct: 103 YRPAIKAKCRDGFCPIGE----TV-----ALSNVDNLTIYTEINGRPADHWNTADLQRNA 153
Query: 316 ENL-EFAS 322
L S
Sbjct: 154 AQLLSALS 161
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 28.8 bits (65), Expect = 3.1
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 182 RHG--LMVVGESFGGKTTAYQTLADSLTDIAAK 212
R G GG + ++ + + AAK
Sbjct: 137 RKGPAFFP-----GGTLSVWEEIRPIVEAAAAK 164
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold,
oxidoreductase; HET: FLC; 2.37A {Saccharomyces
cerevisiae}
Length = 497
Score = 28.8 bits (65), Expect = 3.4
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 182 RHG--LMVVGESFGGKTTAYQTLADSLTDIAAK 212
R+G LM GG A+ + + I+AK
Sbjct: 143 RYGPSLMP-----GGSEEAWPHIKNIFQSISAK 170
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 28.4 bits (63), Expect = 3.5
Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 8/78 (10%)
Query: 26 DIMRQMPEESRNFKTV-----DQIWK-TIMLFVNKDPHILQATEMEDMLKNFNKCNLMLE 79
D R + K + IW I+ + ++ + +L+
Sbjct: 130 DAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFF--SKRSEALLQ 187
Query: 80 LIQKGLNDYLEKKRLFFP 97
+++ G + + + P
Sbjct: 188 VVRSGASLKKDAQASDIP 205
>3rr6_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Length = 265
Score = 28.3 bits (64), Expect = 3.6
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 18/67 (26%)
Query: 267 DRKWIM---FD-----GPIDAVWIENMNTVLD-DNKKL-CLINGEIIKMSNTMNLIFECE 316
D +W D GP WI T LD + ++ +NG++ + S T L+ +
Sbjct: 159 DGQWTRAKGHDTFCPLGP----WIV---TDLDPADLEIRTEVNGQVRQRSRTSLLLHDVG 211
Query: 317 NL-EFAS 322
+ E+ S
Sbjct: 212 AIVEWVS 218
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 28.1 bits (62), Expect = 3.6
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 4/120 (3%)
Query: 185 LMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSA 244
VVG GKTT + + + T+K G + P+ + + A
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAAAVR-EGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVA 65
Query: 245 SHEWRDGILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIK 304
+ DG+L + D + +D V +E + + K+ L+ E
Sbjct: 66 TAVEGDGLLQ-LHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQ--ERHPKVVLVRSEEDW 122
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription
regulation, TETR, DNA-binding transcription; 2.90A
{Pseudomonas aeruginosa}
Length = 210
Score = 28.3 bits (63), Expect = 3.8
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 132 MALISGLVATLNLLFFPRFFFLSNDELLEILSETKDPLRVQPHL 175
+L G+ L + R + + D LR P+L
Sbjct: 164 QSLWDGICG--TLAWTERLRDDPWNRAERMFRAGLDSLRSSPYL 205
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase
(CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1
c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Length = 482
Score = 28.3 bits (64), Expect = 4.2
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 182 RHG--LMVVGESFGGKTTAYQTLADSLTDIAAK 212
R+G LM GG A+ + IAAK
Sbjct: 135 RYGPSLMP-----GGNKEAWPHIKAIFQGIAAK 162
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 28.3 bits (63), Expect = 5.6
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 5/118 (4%)
Query: 1 MQDILDIWLQVQGTWMYLEPIFSSEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQ 60
DI D + + + +D++ ++ +D I I ++ +
Sbjct: 850 YNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGE 909
Query: 61 ATE-----MEDMLKNFNKCNLMLELIQKGLNDYLEKKRLFFPRFFFLSNDELLEILSE 113
E + L N K L+++ IQ+ D L K FF + E
Sbjct: 910 MIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEA 967
>1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region;
esterase, lipase, serine hydrolase, structural genomics;
HET: LI5; 1.70A {Saccharomyces cerevisiae}
Length = 243
Score = 27.6 bits (60), Expect = 6.4
Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 4/77 (5%)
Query: 219 EFKTGYKIINPKSITMGQLYGEFDSASHEWRDGILAKTFREMAVSTTPDRKWIMFDG--- 275
+F+ + + M +YG D A R L + + G
Sbjct: 160 KFRDSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYEHPGGHM 219
Query: 276 -PIDAVWIENMNTVLDD 291
P I + +
Sbjct: 220 VPNKKDIIRPIVEQITS 236
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 27.7 bits (62), Expect = 8.2
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 177 KIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKT 222
+IF GL+ + GGK T Y+ +A+ D A+ + T
Sbjct: 358 EIFFSDSGLISI---AGGKLTGYRKMAERTVDAVAQGLNVNEPCTT 400
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transme
antibiotic resistance, cell shape, peptidoglycan; 2.18A
{Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Length = 680
Score = 27.5 bits (61), Expect = 8.4
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 23/96 (23%)
Query: 119 RVQPHL-KKIFEASMALISGLVATLNLLFFPRFFFLSNDELLEILSETKDPLRVQP-HLK 176
R+ PH+ + I++ + G + I ++ + + + +
Sbjct: 541 RLAPHIVEGIYDNNDKGGLGELIQ------------------AIDTKEINKVNISESDMA 582
Query: 177 KIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIAAK 212
+ G V TT + I+ K
Sbjct: 583 ---ILHQGFYQVSHGTSPLTTGRAFSDGATVSISGK 615
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 27.0 bits (60), Expect = 9.2
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 77 MLELIQKGLNDYLEKKRLFFPRFFFLSNDELLE 109
M + L RL + F + + ELL
Sbjct: 116 MAAGDKWIFKHVLHSDRLLYGTFHYTPDFELLS 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.403
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,567,200
Number of extensions: 330774
Number of successful extensions: 932
Number of sequences better than 10.0: 1
Number of HSP's gapped: 918
Number of HSP's successfully gapped: 47
Length of query: 367
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 272
Effective length of database: 4,049,298
Effective search space: 1101409056
Effective search space used: 1101409056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)