RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4734
         (367 letters)



>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 959

 Score = 29.9 bits (66), Expect = 0.56
 Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 13/170 (7%)

Query: 24  SEDIMRQMPEESRNFKTVDQIWKTIMLFVNKDPHILQATEMEDMLKNFNKCNLMLELIQK 83
           SEDI   +P   +    V +   TI   +      L A  + ++  N      +L+   K
Sbjct: 651 SEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIK 710

Query: 84  GLNDYLEKKRLFFPRFFFLSNDE--------LLEILSETKDPLRVQPHLKKIFEA----- 130
             +            F  L   +        LLE +    D  R++P++K+I        
Sbjct: 711 TDSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRL 770

Query: 131 SMALISGLVATLNLLFFPRFFFLSNDELLEILSETKDPLRVQPHLKKIFE 180
             +     V  L + F      L +D L+  + E +D L  Q     I  
Sbjct: 771 QNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIIT 820


>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 180

 Score = 28.5 bits (62), Expect = 1.1
 Identities = 16/134 (11%), Positives = 39/134 (29%), Gaps = 1/134 (0%)

Query: 187 VVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASH 246
           +VG    GK++    +  +   IA     T+       ++   +  T+  + G  + AS 
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65

Query: 247 EWRDGILAKTFREMA-VSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKM 305
               G+          V              ++ +  E         ++  L+    + +
Sbjct: 66  GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL 125

Query: 306 SNTMNLIFECENLE 319
                +    + L 
Sbjct: 126 LEEEAVKALADALA 139


>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
           {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 333

 Score = 28.4 bits (62), Expect = 1.6
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 172 QPHLKKIFEV------RHGLMVVGESFGGKTTAYQTLADSLTDIAAKKS 214
           Q  +K    +        G++V G+   GK+TA + LA  L +I A + 
Sbjct: 12  QEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEG 60


>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
           subunit QorL {Pseudomonas putida [TaxId: 303]}
          Length = 621

 Score = 28.0 bits (61), Expect = 2.3
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 156 DELLEILSETKDPLRVQPHLKKIFEV-RHGLMV----VGESFGGKTTAYQTLADSLTDIA 210
            + L + + T+ P  V+  +     +  H + V    VG  FG K   +      L  + 
Sbjct: 49  TQQLILWTATQMPSFVRTMVAMFCAIPEHLIEVRVPDVGGGFGQKAHLHPEEL--LVCLL 106

Query: 211 AKK 213
           ++ 
Sbjct: 107 SRA 109


>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha
           subunit HrcA, C-terminal domain {Thauera aromatica
           [TaxId: 59405]}
          Length = 636

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 156 DELLEILSETKDPLRVQPHLKKIF-----EVRHGLMVVGESFGGKTTAYQ 200
            ++L + + T+ P  V   +          +R     +G  FG +T A  
Sbjct: 71  RDMLTLNTTTQVPYYVHLKVAACLQMDSARIRVIKPFLGGGFGARTEALH 120


>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT)
           {Escherichia coli [TaxId: 562]}
          Length = 311

 Score = 27.2 bits (60), Expect = 3.4
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 5/46 (10%)

Query: 201 TLADSLTDIAAKK-----SATMKEFKTGYKIINPKSITMGQLYGEF 241
            +A  L D+ A +       T+     G  +IN   +   +   E 
Sbjct: 52  RVAKILDDLCANQLQPLLLKTLLNRAEGALLINAVGVDDVKQADEM 97


>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
           {Escherichia coli [TaxId: 562]}
          Length = 433

 Score = 27.2 bits (59), Expect = 3.8
 Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 9/142 (6%)

Query: 152 FLSNDELLEILSETKDPLRVQP-HLKKIFEVRHGLMVVGESFGGKTTAYQTLADSLTDIA 210
            +S  +L  +  E    + V    + +  E RH L+V G +  GK+   + LA +   + 
Sbjct: 20  IVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRH-LLVNGATGTGKSVLLRELAYTG--LL 76

Query: 211 AKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASHEW---RDGILAKTFREMAVSTTPD 267
                 + +          +      +   +D  +  W    +      ++  A+S  P 
Sbjct: 77  RGDRMVIVDPNGDMLSKFGRD--KDIILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPR 134

Query: 268 RKWIMFDGPIDAVWIENMNTVL 289
            K    +       +    T  
Sbjct: 135 GKTDEAEEWASYGRLLLRETAK 156


>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
           {Bacillus subtilis [TaxId: 1423]}
          Length = 185

 Score = 26.0 bits (56), Expect = 6.7
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 3/123 (2%)

Query: 187 VVGESFGGKTTAYQTLADSLTDIAAKKSATMKEFKTGYKIINPKSITMGQLYGEFDSASH 246
           +VG    GK+T    ++ +   IA     T+       +  + +S  M  L G  + A  
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH- 64

Query: 247 EWRDGILAKTFREMAVSTTPDRKWIMFDGPIDAVWIENMNTVLDDNKKLCLINGEIIKMS 306
             +   L   F      T      I   G       ++  T+  +  +  L   E  ++ 
Sbjct: 65  --QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122

Query: 307 NTM 309
              
Sbjct: 123 VAN 125


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0467    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,382,893
Number of extensions: 65459
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 24
Length of query: 367
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,213,086
Effective search space: 339664080
Effective search space used: 339664080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)