BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4735
(1232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 303 GFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKSKTC 362
GF++QEFLLSPT G+PNSR RY+LIAK F+ +++ E PK++
Sbjct: 140 GFQYQEFLLSPTSLGIPNSRLRYFLIAKL------QSEPLPFQAPGQVLMEFPKIEIHRK 193
Query: 363 NPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHY 422
N S +++ + D + D+ +YL+ K LLR + DIV + CFTK Y Y
Sbjct: 194 NQQDSDLSVKMLKDFLEDDTDV-NQYLLPPKSLLRYALLLDIVQPTXRRSVCFTKGYGSY 252
Query: 423 AEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDIS 456
EGTGSVL D+ +E+I + +L Q+ I+
Sbjct: 253 IEGTGSVLQTAEDV-QVENIYKSLTNLSQEEQIT 285
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1132 GTNENAGNSVTTTRTNQNEESSVNTLETNQNEATLLQELKRLNLRYFSPDEIRKLMCFPD 1191
G+ SV T + E+ +L TN ++ + +L L LRYF+P EI L+ FP
Sbjct: 250 GSYIEGTGSVLQTAEDVQVENIYKSL-TNLSQEEQITKLLILKLRYFTPKEIANLLGFPP 308
Query: 1192 ECRFPPDCSDKSRYKLLGNSINVHVVAYCICLM 1224
E FP + K RY+LLGNS+NVHVVA I ++
Sbjct: 309 EFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL 341
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 793 GTNENAGNSVTTTRTNQNEENGVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPD 852
G+ SV T + EN + L N ++ + +L L LRYF+P EI L+ FP
Sbjct: 250 GSYIEGTGSVLQTAEDVQVEN-IYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPP 308
Query: 853 DCRFPPDCSDKSRYKLLGNSINVHVVAYCICLM 885
+ FP + K RY+LLGNS+NVHVVA I ++
Sbjct: 309 EFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL 341
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 582 LANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVV 641
L N ++ + +L L LRYF+P EI L+ FP E FP + K RY+LLGNS+NVHVV
Sbjct: 275 LTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVV 334
Query: 642 AYCICLM 648
A I ++
Sbjct: 335 AKLIKIL 341
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 889 PAPMMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVN 948
P ++ E PK++ + N S +++ + D D+ +YL+ K LLR + DIV
Sbjct: 178 PGQVLMEFPKIEIHRKNQQDSDLSVKMLKDFLEDDTDV-NQYLLPPKSLLRYALLLDIVQ 236
Query: 949 RKASSTNCFTKAYTHYAEGTGSVLSNLGDMTQIEEIIEKCKHLKQQ 994
+ CFTK Y Y EGTGSVL D+ Q+E I + +L Q+
Sbjct: 237 PTXRRSVCFTKGYGSYIEGTGSVLQTAEDV-QVENIYKSLTNLSQE 281
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 24/159 (15%)
Query: 299 LTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLK 358
L F +QEFLL P+ GVPNSR RYY A+R+ ++ F+ E++T LPK
Sbjct: 136 LKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRN------NLTWPFKRRDEIITRLPK-- 187
Query: 359 SKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKA 418
+L SI++ +D+ ++LV +K +LR VFDI + + CFTKA
Sbjct: 188 -----DFGVPHSLESIIE-----EDVDEKFLVPEK-MLRCAKVFDICYKTSKRSCCFTKA 236
Query: 419 YTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISS 457
YTHYA+GTGS+ ++ ++++KC Q +I
Sbjct: 237 YTHYADGTGSIFTD-----KPREVVQKCYAAAAQNEIGG 270
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 820 ANQNEAT---LLQELKRLNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVH 876
A QNE ++ K L LRYF+P E+ +MCFP P + S K Y+LLGNS+NV
Sbjct: 263 AAQNEIGGEKFVELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVK 322
Query: 877 VVA 879
V++
Sbjct: 323 VIS 325
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 583 ANQNEAT---LLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVH 639
A QNE ++ K L LRYF+P E+ +MCFP P + S K Y+LLGNS+NV
Sbjct: 263 AAQNEIGGEKFVELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVK 322
Query: 640 VVA 642
V++
Sbjct: 323 VIS 325
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1161 QNEAT---LLQELKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVV 1217
QNE ++ K L LRYF+P E+ +MCFP P + S K Y+LLGNS+NV V+
Sbjct: 265 QNEIGGEKFVELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVI 324
Query: 1218 A 1218
+
Sbjct: 325 S 325
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 925 DLYRRYLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSVLSNLGDMTQIEEI 984
D+ ++LV +K +LR VFDI + + + CFTKAYTHYA+GTGS+ ++ + E+
Sbjct: 202 DVDEKFLVPEK-MLRCAKVFDICYKTSKRSCCFTKAYTHYADGTGSIFTD-----KPREV 255
Query: 985 IEKCKHLKQQ 994
++KC Q
Sbjct: 256 VQKCYAAAAQ 265
>pdb|3QV2|A Chain A, Structure Analysis Of Entamoeba Histolytica
Methyltransferase Ehmeth
Length = 327
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 259 ESRTHAPCTVEPY-VNCLHQTMICFINVLKNQLPYVCTTSMLTRAGFRFQEFLLSPTQFG 317
+S H + PY +N I + + K L + ++L + + ++ + SP G
Sbjct: 106 KSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIG 165
Query: 318 VPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKSKTCNPLLSRMTLHSILDS 377
+PNSRTRYY++A+ +P F+ +L E + + LD
Sbjct: 166 IPNSRTRYYVMARLTP----------FKNEIQLHQE-------------KESMISNYLD- 201
Query: 378 TDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGTGSV 429
+++ Y + +L++ +FDIV T CFTK+YT EGTGS+
Sbjct: 202 ----NNVNESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSYTKIVEGTGSI 249
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 930 YLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSV 971
Y + +L++ +FDIV + T CFTK+YT EGTGS+
Sbjct: 208 YSIPSDLILKKGMLFDIVGKDDKRTCCFTKSYTKIVEGTGSI 249
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 829 QELKRLNLRYFSPDEIRKLMCFPDDCRFPPD-CSDKSRYKLLGNSINVHVVA 879
++L NLRYF+P+EI+K+ F + D +DK +Y+ LGNS++ V+A
Sbjct: 264 EDLLNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIA 315
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 1168 QELKRLNLRYFSPDEIRKLMCFPDECRFPPD-CSDKSRYKLLGNSINVHVVA 1218
++L NLRYF+P+EI+K+ F D +DK +Y+ LGNS++ V+A
Sbjct: 264 EDLLNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIA 315
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 592 QELKRLNLRYFSPDEIRKLMCFPDECQFPPD-CSDKARYKLLGNSINVHVVA 642
++L NLRYF+P+EI+K+ F D +DK +Y+ LGNS++ V+A
Sbjct: 264 EDLLNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIA 315
>pdb|4FJ6|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 33,
Candidate Sialidase (Bdi_2946) From Parabacteroides
Distasonis Atcc 8503 At 1.90 A Resolution
pdb|4FJ6|B Chain B, Crystal Structure Of A Glycoside Hydrolase Family 33,
Candidate Sialidase (Bdi_2946) From Parabacteroides
Distasonis Atcc 8503 At 1.90 A Resolution
pdb|4FJ6|C Chain C, Crystal Structure Of A Glycoside Hydrolase Family 33,
Candidate Sialidase (Bdi_2946) From Parabacteroides
Distasonis Atcc 8503 At 1.90 A Resolution
pdb|4FJ6|D Chain D, Crystal Structure Of A Glycoside Hydrolase Family 33,
Candidate Sialidase (Bdi_2946) From Parabacteroides
Distasonis Atcc 8503 At 1.90 A Resolution
Length = 523
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 1089 NQNEAKSKHVTEIARTNEREAKREDISPNVTGANQRD--GSVNALGTNENAGNSVT 1142
+++ K+ H+ +ARTN EA+ ++ P V N RD G A+ T ++ G + T
Sbjct: 358 SKDRGKTWHLHNLARTNTTEAQVAEVEPGVLXLNXRDNRGGSRAVATTKDLGKTWT 413
>pdb|1XAX|A Chain A, Nmr Structure Of Hi0004, A Putative Essential Gene Product
From Haemophilus Influenzae
Length = 154
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 549 HIARTN-ESEAKREEIAPNATGAYQNQENSVNTLLANQNEATLLQELKRLNLRYFSPDEI 607
IA N E E+I ATGA Q + N V + +EA E LNL Y D
Sbjct: 9 QIATENIEGLPTEEQIVQWATGAVQPEGNEVEMTVRIVDEA----ESHELNLTYRGKDRP 64
Query: 608 RKLMCFPDECQFPPDCSDKARYKLLGNSI 636
++ FP E C D+ LLG+ +
Sbjct: 65 TNVLSFPFE------CPDEVELPLLGDLV 87
>pdb|4GSJ|A Chain A, Crystal Structure Of Atg7 Ntd K14a F16a D18a Mutant
Length = 291
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 328 IAKRSPAAHSSEASFCFETSSELMTELPKLKSKTCNPLLSRMTLHSILDSTD 379
+ +PA S+ A+ F+ S L ++ KL S TC PL + LH+I S D
Sbjct: 8 VLSYAPAFASALATSFFQELSRLKLDVLKLDS-TCQPLTVNLDLHNIPKSAD 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,189,840
Number of Sequences: 62578
Number of extensions: 1459097
Number of successful extensions: 4291
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4243
Number of HSP's gapped (non-prelim): 68
length of query: 1232
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1122
effective length of database: 8,089,757
effective search space: 9076707354
effective search space used: 9076707354
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)