BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4735
(1232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7YS61|TRDMT_BOVIN tRNA (cytosine-5-)-methyltransferase OS=Bos taurus GN=TRDMT1 PE=2
SV=1
Length = 391
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 85/199 (42%), Gaps = 53/199 (26%)
Query: 303 GFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKS--- 359
GF++QEFLLSPT G+PNSR RY+LIAK P F F+ +++ E PK +S
Sbjct: 141 GFQYQEFLLSPTSLGIPNSRLRYFLIAKLQPEP------FPFQAPGQVLMEFPKTESEHP 194
Query: 360 ------------------KTC----------NPLLSRMTLHSILDSTDPSD-DLYRR--- 387
K C +L ++ +D D DL R
Sbjct: 195 PKYAINAEKKTEEKKTGPKICFDSSTQCSGKEAILFKLETAGEIDRKHQQDSDLSVRMLK 254
Query: 388 -----------YLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGTGSVLSNLGDM 436
+ + K LLR + DIV + + CFTK Y Y EGTGSVL D+
Sbjct: 255 DFLEDDIDKHSFFLPPKSLLRYALLLDIVKPTSRRSMCFTKGYGRYIEGTGSVLQTTEDV 314
Query: 437 THIEDIIEKCKHLKQQTDI 455
IE+I + L Q+ I
Sbjct: 315 -QIENIYKSLTSLSQEEKI 332
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 1135 ENAGNSVTTTRTNQNEESSVNTLETNQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECR 1194
E G+ + TT Q E + +Q E + L L LR+F+P EI L+ FP E
Sbjct: 302 EGTGSVLQTTEDVQIENIYKSLTSLSQEEKIM--RLSMLQLRFFTPKEIANLLGFPPEFG 359
Query: 1195 FPPDCSDKSRYKLLGNSINVHVVAYCICLMLCE 1227
FP + K RY+LLGNS+NVHVVA I + LC+
Sbjct: 360 FPEMTTVKQRYRLLGNSLNVHVVAKLIKI-LCD 391
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 796 ENAGNSVTTTRTNQNEENGVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDDCR 855
E G+ + TT Q E N +L + E +++ L L LR+F+P EI L+ FP +
Sbjct: 302 EGTGSVLQTTEDVQIE-NIYKSLTSLSQEEKIMR-LSMLQLRFFTPKEIANLLGFPPEFG 359
Query: 856 FPPDCSDKSRYKLLGNSINVHVVAYCICLMLCE 888
FP + K RY+LLGNS+NVHVVA I + LC+
Sbjct: 360 FPEMTTVKQRYRLLGNSLNVHVVAKLIKI-LCD 391
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 575 ENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGN 634
EN +L + E +++ L L LR+F+P EI L+ FP E FP + K RY+LLGN
Sbjct: 317 ENIYKSLTSLSQEEKIMR-LSMLQLRFFTPKEIANLLGFPPEFGFPEMTTVKQRYRLLGN 375
Query: 635 SINVHVVAYCICLMLCE 651
S+NVHVVA I + LC+
Sbjct: 376 SLNVHVVAKLIKI-LCD 391
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 930 YLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSVLSNLGDMTQIEEIIEKCK 989
+ + K LLR + DIV + + CFTK Y Y EGTGSVL D+ QIE I +
Sbjct: 266 FFLPPKSLLRYALLLDIVKPTSRRSMCFTKGYGRYIEGTGSVLQTTEDV-QIENIYKSLT 324
Query: 990 HLKQQ 994
L Q+
Sbjct: 325 SLSQE 329
>sp|O14717|TRDMT_HUMAN tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens
GN=TRDMT1 PE=1 SV=1
Length = 391
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 89/200 (44%), Gaps = 53/200 (26%)
Query: 303 GFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKS--- 359
GF++QEFLLSPT G+PNSR RY+LIAK F+ +++ E PK++S
Sbjct: 141 GFQYQEFLLSPTSLGIPNSRLRYFLIAKL------QSEPLPFQAPGQVLMEFPKIESVHP 194
Query: 360 -------------KTCNPLLSR------MTLHSILDSTDPSDDLYRR------------- 387
K P +S +IL + +++++R+
Sbjct: 195 QKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHRKNQQDSDLSVKMLK 254
Query: 388 -----------YLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGTGSVLSNLGDM 436
YL+ K LLR + DIV + CFTK Y Y EGTGSVL D+
Sbjct: 255 DFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDV 314
Query: 437 THIEDIIEKCKHLKQQTDIS 456
+E+I + +L Q+ I+
Sbjct: 315 -QVENIYKSLTNLSQEEQIT 333
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1132 GTNENAGNSVTTTRTNQNEESSVNTLETNQNEATLLQELKRLNLRYFSPDEIRKLMCFPD 1191
G+ SV T + E+ +L TN ++ + +L L LRYF+P EI L+ FP
Sbjct: 298 GSYIEGTGSVLQTAEDVQVENIYKSL-TNLSQEEQITKLLILKLRYFTPKEIANLLGFPP 356
Query: 1192 ECRFPPDCSDKSRYKLLGNSINVHVVAYCICLM 1224
E FP + K RY+LLGNS+NVHVVA I ++
Sbjct: 357 EFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL 389
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 793 GTNENAGNSVTTTRTNQNEENGVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPD 852
G+ SV T + EN + L N ++ + +L L LRYF+P EI L+ FP
Sbjct: 298 GSYIEGTGSVLQTAEDVQVEN-IYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPP 356
Query: 853 DCRFPPDCSDKSRYKLLGNSINVHVVAYCICLM 885
+ FP + K RY+LLGNS+NVHVVA I ++
Sbjct: 357 EFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL 389
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 582 LANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVV 641
L N ++ + +L L LRYF+P EI L+ FP E FP + K RY+LLGNS+NVHVV
Sbjct: 323 LTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVV 382
Query: 642 AYCICLM 648
A I ++
Sbjct: 383 AKLIKIL 389
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 929 RYLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSVLSNLGDMTQIEEIIEKC 988
+YL+ K LLR + DIV + CFTK Y Y EGTGSVL D+ Q+E I +
Sbjct: 265 QYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDV-QVENIYKSL 323
Query: 989 KHLKQQ 994
+L Q+
Sbjct: 324 TNLSQE 329
>sp|Q4G073|TRDMT_RAT tRNA (cytosine(38)-C(5))-methyltransferase OS=Rattus norvegicus
GN=Trdmt1 PE=2 SV=1
Length = 391
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 92/216 (42%), Gaps = 53/216 (24%)
Query: 303 GFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELP------- 355
GF++QEFLLSP+ G+PNSR RY+LIAK CF+ +++ E P
Sbjct: 141 GFQYQEFLLSPSSLGIPNSRLRYFLIAKL------QSEPLCFQAPGQILMEFPNSGTVQP 194
Query: 356 ---------KLKSKTCNP---LLSRMT----LHSILDSTDPSDDLYRR------------ 387
KL+ +T P L S T SIL + + D+ R+
Sbjct: 195 QEYAVVEEGKLRVRTREPDVCLDSSSTQCSGQDSILFKHETAADIDRKRQQDSDLSVQML 254
Query: 388 -----------YLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGTGSVLSNLGDM 436
YL+ K LLR + DIV + + CFTK Y Y EGTGSVL D+
Sbjct: 255 KGFLEDGDTAQYLLPAKSLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQTAEDV 314
Query: 437 THIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEA 472
IE+I + L + I+ K + E A
Sbjct: 315 -QIENIYKSLPDLPPEEKIAKLSMLKLRYFTPKEIA 349
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 1167 LQELKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLC 1226
+ +L L LRYF+P EI L+ FP E FP + K RY+LLGNS+NVHVV+ + +LC
Sbjct: 332 IAKLSMLKLRYFTPKEIANLLGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVSKLLT-VLC 390
Query: 1227 E 1227
E
Sbjct: 391 E 391
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 591 LQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLC 650
+ +L L LRYF+P EI L+ FP E FP + K RY+LLGNS+NVHVV+ + +LC
Sbjct: 332 IAKLSMLKLRYFTPKEIANLLGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVSKLLT-VLC 390
Query: 651 E 651
E
Sbjct: 391 E 391
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 828 LQELKRLNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLC 887
+ +L L LRYF+P EI L+ FP + FP + K RY+LLGNS+NVHVV+ + +LC
Sbjct: 332 IAKLSMLKLRYFTPKEIANLLGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVSKLLT-VLC 390
Query: 888 E 888
E
Sbjct: 391 E 391
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 908 LSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEG 967
LS L G L+ GD +YL+ K LLR + DIV + + CFTK Y Y EG
Sbjct: 249 LSVQMLKGFLED----GDT-AQYLLPAKSLLRYALLLDIVKPTSRRSMCFTKGYGSYIEG 303
Query: 968 TGSVLSNLGDMTQIEEI 984
TGSVL D+ QIE I
Sbjct: 304 TGSVLQTAEDV-QIENI 319
>sp|P40999|PMT1M_SCHPO tRNA (cytosine(38)-C(5))-methyltransferase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pmt1 PE=1 SV=1
Length = 330
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 19/134 (14%)
Query: 298 MLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS-PAAHSSEASFCFETSSELMTELPK 356
+L G+ E +LSP QF +PNSR+R+Y +A+ + S + F F ++ E+ +
Sbjct: 138 VLRNCGYNLIEGILSPNQFNIPNSRSRWYGLARLNFKGEWSIDDVFQFSEVAQKEGEVKR 197
Query: 357 LKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFT 416
++ D + D + Y+V + L + H FDIV +SS CFT
Sbjct: 198 IR-----------------DYLEIERD-WSSYMVLESVLNKWGHQFDIVKPDSSSCCCFT 239
Query: 417 KAYTHYAEGTGSVL 430
+ YTH +G GS+L
Sbjct: 240 RGYTHLVQGAGSIL 253
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 597 LNLRYFSPDEIRKLMCFPDECQFP-PDCSDKARYKLLGNSINVHVVAYCICLMLCEP 652
L LRYF+ E+ +LM FP+ ++ + ++K Y+LLGNSINV VV+Y I L+L EP
Sbjct: 272 LQLRYFTAREVARLMGFPESLEWSKSNVTEKCMYRLLGNSINVKVVSYLISLLL-EP 327
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 805 TRTNQNEENGVNTLLANQNEATLLQELKR----LNLRYFSPDEIRKLMCFPDDCRFP-PD 859
TR + G ++L + ++ +R L LRYF+ E+ +LM FP+ + +
Sbjct: 239 TRGYTHLVQGAGSILQMSDHENTHEQFERNRMALQLRYFTAREVARLMGFPESLEWSKSN 298
Query: 860 CSDKSRYKLLGNSINVHVVAYCICLMLCEP 889
++K Y+LLGNSINV VV+Y I L+L EP
Sbjct: 299 VTEKCMYRLLGNSINVKVVSYLISLLL-EP 327
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 1173 LNLRYFSPDEIRKLMCFPDECRFP-PDCSDKSRYKLLGNSINVHVVAYCICLMLCEP 1228
L LRYF+ E+ +LM FP+ + + ++K Y+LLGNSINV VV+Y I L+L EP
Sbjct: 272 LQLRYFTAREVARLMGFPESLEWSKSNVTEKCMYRLLGNSINVKVVSYLISLLL-EP 327
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 927 YRRYLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSVL 972
+ Y+V + L + H FDIV +SS CFT+ YTH +G GS+L
Sbjct: 208 WSSYMVLESVLNKWGHQFDIVKPDSSSCCCFTRGYTHLVQGAGSIL 253
>sp|O55055|TRDMT_MOUSE tRNA (cytosine(38)-C(5))-methyltransferase OS=Mus musculus
GN=Trdmt1 PE=2 SV=2
Length = 415
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 88/218 (40%), Gaps = 51/218 (23%)
Query: 303 GFRFQEFLLSPTQFGVPNSRTRYYLIAK-------------------------------- 330
GF++QEFLLSP+ G+PNSR RY+LIAK
Sbjct: 141 GFQYQEFLLSPSSLGIPNSRLRYFLIAKLQSEPFPFQAPGQILMEFPKIVTVEPQKYAVV 200
Query: 331 --RSPAAHSSEASFCFETSS-----------ELMTELPKLKSKTCNPLLSRMTLHSILDS 377
P + C E+SS +L T + + + LS L L+
Sbjct: 201 EESQPRVQRTGPRICAESSSTQSSGKDTILFKLETVEERDRKHQQDSDLSVQMLKDFLED 260
Query: 378 TDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGTGSVLSNLGDMT 437
D +D+ YL+ K LLR + DIV + + CFTK Y Y EGTGSVL D
Sbjct: 261 GD-TDE----YLLPPKLLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQAAED-A 314
Query: 438 HIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEAQTQ 475
IE+I + L + I+ K + E A Q
Sbjct: 315 QIENIYKSLPDLPPEEKIAKLSMLKLRYFTPKEIANLQ 352
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1167 LQELKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLC 1226
+ +L L LRYF+P EI L FP E FP + K RY+LLGNS+NVHVVA + +LC
Sbjct: 332 IAKLSMLKLRYFTPKEIANLQGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVAKLLT-VLC 390
Query: 1227 E 1227
E
Sbjct: 391 E 391
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 591 LQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLC 650
+ +L L LRYF+P EI L FP E FP + K RY+LLGNS+NVHVVA + +LC
Sbjct: 332 IAKLSMLKLRYFTPKEIANLQGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVAKLLT-VLC 390
Query: 651 E 651
E
Sbjct: 391 E 391
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 828 LQELKRLNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLC 887
+ +L L LRYF+P EI L FP + FP + K RY+LLGNS+NVHVVA + +LC
Sbjct: 332 IAKLSMLKLRYFTPKEIANLQGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVAKLLT-VLC 390
Query: 888 E 888
E
Sbjct: 391 E 391
Score = 41.6 bits (96), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 930 YLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSVLSNLGDMTQIEEI 984
YL+ K LLR + DIV + + CFTK Y Y EGTGSVL D QIE I
Sbjct: 266 YLLPPKLLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQAAED-AQIENI 319
>sp|Q54JH6|CMT1_DICDI DNA (cytosine-5)-methyltransferase OS=Dictyostelium discoideum
GN=dnmA PE=1 SV=1
Length = 379
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 23/153 (15%)
Query: 299 LTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA--------AHSSEASFCFETSS-- 348
L + + FQEF LSP QFG+ N R RY+ IAKR+ H+ + ++
Sbjct: 139 LIKMNYSFQEFHLSPQQFGLANQRLRYFCIAKRNGKLNFKKEQDKHNEKVDENKLNNNSN 198
Query: 349 -----------ELMTELPKLKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLR 397
+++ +P T ++ + D TD D+LY +Y V LL
Sbjct: 199 NNNEQNKYDNLKILDHIPGYDFHTTLEECDEISNYFDKDLTD--DELYEKYKVPHNLLLS 256
Query: 398 RFHVFDIVNGKASSTNCFTKAYTHYAEGTGSVL 430
+ +FDI + ++NC TK+Y + EGTGS++
Sbjct: 257 KGMLFDIKQKDSKTSNCVTKSYGKFIEGTGSII 289
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 1173 LNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVA 1218
L LRYFSP EI +L FP+E +F P + Y+L+GNS+NV +V+
Sbjct: 308 LKLRYFSPKEITRLHGFPEEFKFSPKLTTIQCYRLIGNSLNVKIVS 353
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 597 LNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVA 642
L LRYFSP EI +L FP+E +F P + Y+L+GNS+NV +V+
Sbjct: 308 LKLRYFSPKEITRLHGFPEEFKFSPKLTTIQCYRLIGNSLNVKIVS 353
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 834 LNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVA 879
L LRYFSP EI +L FP++ +F P + Y+L+GNS+NV +V+
Sbjct: 308 LKLRYFSPKEITRLHGFPEEFKFSPKLTTIQCYRLIGNSLNVKIVS 353
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 925 DLYRRYLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTGSVL 972
+LY +Y V LL + +FDI + + ++NC TK+Y + EGTGS++
Sbjct: 242 ELYEKYKVPHNLLLSKGMLFDIKQKDSKTSNCVTKSYGKFIEGTGSII 289
>sp|Q6R7J9|Y024_OSHVF Uncharacterized protein ORF24 OS=Ostreid herpesvirus 1 (isolate
France) GN=ORF24 PE=4 SV=1
Length = 377
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 17/147 (11%)
Query: 487 EMVKDAQNRADLEKKILDERVKDAQNRVDLEKNPEE----TVNDASNSNVITTNITEINQ 542
+M+KD + E V++ V K+PEE T+N S VI +T +
Sbjct: 67 QMIKDGNLSVSCPDHMKTEEVENIAKIVVSHKDPEEFYCVTINGFSLDGVIKNQMTVVKN 126
Query: 543 NETKSKHIARTNESEAKREEIAPNATGAYQNQENSVNTLLANQNEATLLQELKRLNLRYF 602
+ K + + RE + A Y+N++ + N LA NE T L+ YF
Sbjct: 127 GQLK--------KEDKSRERVVEAAEQFYKNKKIASNETLA--NETTSKPPLENGVPMYF 176
Query: 603 SPDEIRKLMCFPDECQFPPDCSDKARY 629
P +I FP + + P D +K +
Sbjct: 177 QPPDIEP---FPLKNRVPTDTDEKKDF 200
>sp|Q6KI53|RL23_MYCMO 50S ribosomal protein L23 OS=Mycoplasma mobile (strain ATCC 43663 /
163K / NCTC 11711) GN=rplW PE=3 SV=1
Length = 213
Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 947 VNRKASSTNCFTKAYTHYAEGTGSVLSNLGDMTQIEEIIEKCKHLKQQIDNSSTDETKAK 1006
V R TN + KAY + EG ++ EEI ++ K KQ I ST E K +
Sbjct: 65 VGRFKGLTNSYKKAYVYLREGKINIFP--------EEIEKEQKVEKQLIKEKSTSELKLE 116
Query: 1007 KIKLDVEDTETQFGDEGEREILDEMVKDAQNRVNLEKKTLDEKVNDTLNQDDLVEKE 1063
E + + + EI DE+VK +V KK + K + + V+KE
Sbjct: 117 ------EKIAAKIAAKEQSEIKDEIVKSVPKKVTSIKKEITSKEVTPIKKTTSVKKE 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,840,051
Number of Sequences: 539616
Number of extensions: 19789573
Number of successful extensions: 103585
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 905
Number of HSP's that attempted gapping in prelim test: 88322
Number of HSP's gapped (non-prelim): 13211
length of query: 1232
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1103
effective length of database: 121,958,995
effective search space: 134520771485
effective search space used: 134520771485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)