Query psy4735
Match_columns 1232
No_of_seqs 473 out of 875
Neff 2.6
Searched_HMMs 29240
Date Sat Aug 17 00:40:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h0n_A DNMT2; SAH binding, tra 100.0 1.2E-47 4.1E-52 408.6 22.8 238 259-650 93-333 (333)
2 3qv2_A 5-cytosine DNA methyltr 100.0 3.7E-45 1.3E-49 389.1 19.5 219 259-653 102-326 (327)
3 1g55_A DNA cytosine methyltran 100.0 3.8E-41 1.3E-45 357.2 18.4 245 259-650 92-343 (343)
4 3me5_A Cytosine-specific methy 100.0 7.7E-32 2.6E-36 301.0 15.3 146 259-425 202-373 (482)
5 3ubt_Y Modification methylase 100.0 1.1E-30 3.9E-35 269.0 9.2 76 259-334 85-165 (331)
6 4dkj_A Cytosine-specific methy 100.0 4.4E-31 1.5E-35 289.1 5.7 138 259-422 152-302 (403)
7 2c7p_A Modification methylase 100.0 4.8E-30 1.6E-34 272.4 9.5 85 259-346 95-184 (327)
8 4ft4_B DNA (cytosine-5)-methyl 100.0 3.8E-28 1.3E-32 278.9 19.5 76 259-334 407-487 (784)
9 4h0n_A DNMT2; SAH binding, tra 99.9 4E-28 1.4E-32 258.9 13.7 155 890-1226 179-333 (333)
10 3g7u_A Cytosine-specific methy 99.9 2.4E-27 8.2E-32 256.2 11.6 76 258-334 93-174 (376)
11 3qv2_A 5-cytosine DNA methyltr 99.9 4.1E-26 1.4E-30 243.2 8.2 59 1169-1227 265-324 (327)
12 3swr_A DNA (cytosine-5)-methyl 99.9 1.1E-22 3.6E-27 243.6 15.2 77 258-334 643-724 (1002)
13 3av4_A DNA (cytosine-5)-methyl 99.9 3.6E-22 1.2E-26 244.0 14.1 77 258-334 954-1035(1330)
14 2qrv_A DNA (cytosine-5)-methyl 99.9 3.6E-22 1.2E-26 210.7 9.3 61 595-655 235-295 (295)
15 1g55_A DNA cytosine methyltran 99.9 4.6E-22 1.6E-26 211.5 9.7 57 1170-1226 287-343 (343)
16 3me5_A Cytosine-specific methy 99.5 3E-14 1E-18 159.9 9.8 52 1173-1226 399-454 (482)
17 3ubt_Y Modification methylase 99.4 6.1E-14 2.1E-18 144.9 4.6 52 1174-1226 271-322 (331)
18 4dkj_A Cytosine-specific methy 99.4 8.9E-14 3E-18 153.0 2.0 58 833-897 332-393 (403)
19 2qrv_A DNA (cytosine-5)-methyl 99.3 4.1E-13 1.4E-17 142.1 3.9 55 1172-1226 236-290 (295)
20 2c7p_A Modification methylase 99.3 7.6E-13 2.6E-17 141.1 5.7 51 834-886 269-319 (327)
21 4ft4_B DNA (cytosine-5)-methyl 99.3 2.3E-12 7.9E-17 148.8 6.3 70 801-885 668-737 (784)
22 3g7u_A Cytosine-specific methy 99.2 1.2E-11 4E-16 134.4 5.2 54 1171-1226 312-365 (376)
23 3av4_A DNA (cytosine-5)-methyl 98.9 6.7E-10 2.3E-14 137.2 4.7 54 1171-1226 1253-1306(1330)
24 3swr_A DNA (cytosine-5)-methyl 98.7 4.9E-09 1.7E-13 126.8 4.7 54 1171-1226 943-996 (1002)
25 2pv0_B DNA (cytosine-5)-methyl 98.2 2.3E-07 7.8E-12 103.0 1.3 68 260-334 255-330 (386)
26 2qrv_B DNA (cytosine-5)-methyl 98.0 3E-06 1E-10 88.7 4.4 68 260-334 99-174 (230)
27 3cgg_A SAM-dependent methyltra 30.7 1.3E+02 0.0043 27.5 7.2 45 288-332 151-195 (195)
28 1y8c_A S-adenosylmethionine-de 20.6 1.8E+02 0.0061 27.7 6.4 42 291-332 204-245 (246)
No 1
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=100.00 E-value=1.2e-47 Score=408.60 Aligned_cols=238 Identities=35% Similarity=0.568 Sum_probs=199.8
Q ss_pred hccCCCcccchhhhhccC-CcEEEEEEcc--cCCchHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEeCCCC
Q psy4735 259 ESRTHAPCTVEPYVNCLH-QTMICFINVL--KNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAA 335 (1232)
Q Consensus 259 ~~R~~l~~~~v~~V~alr-Pr~~VfENV~--K~~~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkRk~l~ 335 (1232)
..|++||.+|+++|+.++ |++|++|||. .++..++.|++.|+++||.+.+++|||.+|||||+|+|+||||+|.+.
T Consensus 93 d~r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~- 171 (333)
T 4h0n_A 93 DPRTNSFLYLIGILDQLDNVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNL- 171 (333)
T ss_dssp CTTSCCHHHHHHHGGGCTTCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTS-
T ss_pred CcccccHHHHHHHHHHhcCCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCC-
Confidence 469999999999999997 9999999995 466789999999999999999999999999999999999999999997
Q ss_pred CCCCCcccccCCccccccccccccccCCCCccccchhhhccCCCCCcccccccccCHHHHhhhcccceEeeCCCCccccc
Q psy4735 336 HSSEASFCFETSSELMTELPKLKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCF 415 (1232)
Q Consensus 336 ~sd~ndF~Fp~psqIl~e~Pk~~sksC~PIlsvkpLsDFLEedVDs~E~~eKYLLPDKLLeRyG~lfDIVtPsSrRScCF 415 (1232)
+|.|+.+..++..+|... ....+|+||||++++ ++|++|++++ ||+..|||++|++++++||
T Consensus 172 -----~~~f~~~~~~~~~~P~~~-------~~~~~l~d~Le~~~~-----~~y~~~~~~~-~~~~~~d~~~~~~~~~~~~ 233 (333)
T 4h0n_A 172 -----TWPFKRRDEIITRLPKDF-------GVPHSLESIIEEDVD-----EKFLVPEKML-RCAKVFDICYKTSKRSCCF 233 (333)
T ss_dssp -----CCCSCCCSSCBSSCSSCC-------CSCCCSSTTCCSSCC-----GGGBCCHHHH-TTGGGCCEECTTCSCCCCC
T ss_pred -----CCCCCcccchhhhCCCCc-------cccccHHHHhccCCc-----ccccCCHHHH-HHHHHhccCChhhhhhhhh
Confidence 678876666777777521 124579999998754 6899999999 9999999999999999999
Q ss_pred cccceeeeeeccceeeccCCCchhHHHHHHHhhhcccccccchhhhHHHhhhhhHHHhhhccCCCcccchhhhhhhhhhh
Q psy4735 416 TKAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEAQTQLSGEGEKKTHDEMVKDAQNR 495 (1232)
Q Consensus 416 TKGYGhYVEGTGSVLQ~~~d~t~~e~~~~~~~~~~~~~~~sS~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~~~~~~ 495 (1232)
||||++|++||||+++...+ +....+++.+.
T Consensus 234 ~k~~~~~~~g~gs~~~~~~~----~~~~~~~~~~~--------------------------------------------- 264 (333)
T 4h0n_A 234 TKAYTHYADGTGSIFTDKPR----EVVQKCYAAAA--------------------------------------------- 264 (333)
T ss_dssp CTTBTTBSSSSCCEECSSCH----HHHHHHHHHGG---------------------------------------------
T ss_pred ccccceEEeccCceeccccc----cchhhhhcccc---------------------------------------------
Confidence 99999999999999975433 12222222111
Q ss_pred hhHHHHHHHHHHhhhhccccccCCCcccccccCCCcccccccccccccccccccccccchhhhhhhccCccccccccccc
Q psy4735 496 ADLEKKILDERVKDAQNRVDLEKNPEETVNDASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGAYQNQE 575 (1232)
Q Consensus 496 ~d~ek~~l~~~~k~a~~~~D~~~~~~d~~~d~~~~~~~~~~~~e~~~~e~~s~~~ar~~e~~a~~~~~~~~~~~~~~~~~ 575 (1232)
+ .
T Consensus 265 ---------------------------~-------------------~-------------------------------- 266 (333)
T 4h0n_A 265 ---------------------------Q-------------------N-------------------------------- 266 (333)
T ss_dssp ---------------------------G-------------------S--------------------------------
T ss_pred ---------------------------c-------------------C--------------------------------
Confidence 0 0
Q ss_pred ccchhhhhcchhhhhhhhhcCCCcccccHHHHHhhCCCCCCCCCCCCCCHHHHHHHhCCcccHHHHHHHHHHHhc
Q psy4735 576 NSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLC 650 (1232)
Q Consensus 576 n~Vs~tl~~~~e~~~l~~LhplkLRyFTPREvARLQGFPDdF~FP~~IS~KQrYKLLGNSVnV~VVa~Lak~LL~ 650 (1232)
..+..+.+..+++.++|+||||||+|||||||+|.||..+|++|+|+|+||||+|+||++|++.|++
T Consensus 267 --------~~G~~~~~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~ 333 (333)
T 4h0n_A 267 --------EIGGEKFVELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILFE 333 (333)
T ss_dssp --------CTTCHHHHHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHHC
T ss_pred --------CCCcccceeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHhC
Confidence 0011223445678899999999999999999999999999999999999999999999999999974
No 2
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=100.00 E-value=3.7e-45 Score=389.12 Aligned_cols=219 Identities=29% Similarity=0.475 Sum_probs=187.4
Q ss_pred hccCCCcccchh-hhhcc--CCcEEEEEEcc--cCCchHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEeCC
Q psy4735 259 ESRTHAPCTVEP-YVNCL--HQTMICFINVL--KNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 333 (1232)
Q Consensus 259 ~~R~~l~~~~v~-~V~al--rPr~~VfENV~--K~~~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkRk~ 333 (1232)
..|++||.++++ +|+.+ +|++|++|||. .++.+|+.|++.|+++||.+.+++|+|.+|||||+|+|+||||+|++
T Consensus 102 d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~ 181 (327)
T 3qv2_A 102 DPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTP 181 (327)
T ss_dssp CGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSC
T ss_pred cccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCC
Confidence 478999999999 99999 99999999994 46789999999999999999999999999999999999999999976
Q ss_pred CCCCCCCcccccCCccccccccccccccCCCCccccchhhhccCCCCCcccccccccCHHHHhhhcccceEeeCCCCccc
Q psy4735 334 AAHSSEASFCFETSSELMTELPKLKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASSTN 413 (1232)
Q Consensus 334 l~~sd~ndF~Fp~psqIl~e~Pk~~sksC~PIlsvkpLsDFLEedVDs~E~~eKYLLPDKLLeRyG~lfDIVtPsSrRSc 413 (1232)
|.||.+... ....+|++|||++++ ++|++|++++.+|+.+||||+|++++||
T Consensus 182 --------f~fP~~~~~---------------~~~~~l~d~Le~~~~-----~~y~l~~~~~~~~~~~~di~~~~~~~~~ 233 (327)
T 3qv2_A 182 --------FKNEIQLHQ---------------EKESMISNYLDNNVN-----ESYSIPSDLILKKGMLFDIVGKDDKRTC 233 (327)
T ss_dssp --------CCSCCCCCC---------------CSCCCGGGGCCSSCC-----GGGBCCHHHHHHHGGGSCEEETTSSCBC
T ss_pred --------CCCCCcccc---------------cccccHHHHhccccc-----ccccCCHHHHHhhhcccccccccccccc
Confidence 455543200 013479999997764 6899999999999999999999999999
Q ss_pred cccccceeeeeeccceeeccCCCchhHHHHHHHhhhcccccccchhhhHHHhhhhhHHHhhhccCCCcccchhhhhhhhh
Q psy4735 414 CFTKAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEAQTQLSGEGEKKTHDEMVKDAQ 493 (1232)
Q Consensus 414 CFTKGYGhYVEGTGSVLQ~~~d~t~~e~~~~~~~~~~~~~~~sS~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~~~~ 493 (1232)
||||||++|++||||+|.....
T Consensus 234 ~~t~~y~~y~~~~gs~l~~~~~---------------------------------------------------------- 255 (327)
T 3qv2_A 234 CFTKSYTKIVEGTGSIYCPIEP---------------------------------------------------------- 255 (327)
T ss_dssp CCCTTTTTSSTTSCCEEESSCS----------------------------------------------------------
T ss_pred cccccceEEecCCCceeecccc----------------------------------------------------------
Confidence 9999999999999999942111
Q ss_pred hhhhHHHHHHHHHHhhhhccccccCCCcccccccCCCcccccccccccccccccccccccchhhhhhhccCccccccccc
Q psy4735 494 NRADLEKKILDERVKDAQNRVDLEKNPEETVNDASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGAYQN 573 (1232)
Q Consensus 494 ~~~d~ek~~l~~~~k~a~~~~D~~~~~~d~~~d~~~~~~~~~~~~e~~~~e~~s~~~ar~~e~~a~~~~~~~~~~~~~~~ 573 (1232)
++. . .
T Consensus 256 ---------------------------~~~--------------~-------~--------------------------- 260 (327)
T 3qv2_A 256 ---------------------------HFI--------------P-------V--------------------------- 260 (327)
T ss_dssp ---------------------------SCC--------------C-------C---------------------------
T ss_pred ---------------------------ccc--------------c-------c---------------------------
Confidence 000 0 0
Q ss_pred ccccchhhhhcchhhhhhhhhcCCCcccccHHHHHhhCCCCCCCCCC-CCCCHHHHHHHhCCcccHHHHHHHHHHHhcCC
Q psy4735 574 QENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFP-PDCSDKARYKLLGNSINVHVVAYCICLMLCEP 652 (1232)
Q Consensus 574 ~~n~Vs~tl~~~~e~~~l~~LhplkLRyFTPREvARLQGFPDdF~FP-~~IS~KQrYKLLGNSVnV~VVa~Lak~LL~~~ 652 (1232)
.....+++.++|+|||||+|||||||++|.|| .++|.+|+|+|+||||+|+|+++|++.|++.+
T Consensus 261 ---------------~~~~~~~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l 325 (327)
T 3qv2_A 261 ---------------KKAEDLLNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL 325 (327)
T ss_dssp ---------------SSGGGGTTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTS
T ss_pred ---------------CCceeecCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHh
Confidence 01345667899999999999999999999999 88999999999999999999999999998865
Q ss_pred C
Q psy4735 653 A 653 (1232)
Q Consensus 653 ~ 653 (1232)
.
T Consensus 326 ~ 326 (327)
T 3qv2_A 326 K 326 (327)
T ss_dssp C
T ss_pred c
Confidence 3
No 3
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=100.00 E-value=3.8e-41 Score=357.22 Aligned_cols=245 Identities=37% Similarity=0.588 Sum_probs=186.3
Q ss_pred hccCCCcccchhhhhccC--CcEEEEEEccc--CCchHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEeCCC
Q psy4735 259 ESRTHAPCTVEPYVNCLH--QTMICFINVLK--NQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 334 (1232)
Q Consensus 259 ~~R~~l~~~~v~~V~alr--Pr~~VfENV~K--~~~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkRk~l 334 (1232)
..|++||..|+++|+.++ |++|++|||.. ++.+|+.|++.|+++||.+.+.+|||.+|||||+|+|+||||+|++.
T Consensus 92 d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~ 171 (343)
T 1g55_A 92 DSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSE 171 (343)
T ss_dssp ----CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEEEECGGGGTCSCCCCEEEEEEEESSS
T ss_pred CccchHHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCCeeEEEEEEHHHCCCCCcccEEEEEEEeCCC
Confidence 469999999999999999 99999999964 67899999999999999999999999999999999999999999886
Q ss_pred CCCCCCcccccCCcccccccccccc-ccCCCC--ccccchhhhccCCCCCcccccccccCHHHHhhhcccceEeeCCCCc
Q psy4735 335 AHSSEASFCFETSSELMTELPKLKS-KTCNPL--LSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIVNGKASS 411 (1232)
Q Consensus 335 ~~sd~ndF~Fp~psqIl~e~Pk~~s-ksC~PI--lsvkpLsDFLEedVDs~E~~eKYLLPDKLLeRyG~lfDIVtPsSrR 411 (1232)
+|.|+.+......+|.... ....+. ....++.+||+.+.+ ..+|.++++.+.||..++|++.|.+.+
T Consensus 172 ------~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 1g55_A 172 ------PLPFQAPGQVLMEFPKIEIHRKNQQDSDLSVKMLKDFLEDDTD----VNQYLLPPKSLLRYALLLDIVQPTCRR 241 (343)
T ss_dssp ------CCTTCCTTCEESSCCC------------CCCCCGGGGCCTTCC----HHHHBCCHHHHHHHGGGCCEECTTCSC
T ss_pred ------CCCCCCCcchhhhCCHhHhcCccCcccccccccHHHHhccCcc----hhhccCCHHHHHHHHHHhCCCCccccc
Confidence 5666654332222332100 000000 012368899976543 256999999999999999999999999
Q ss_pred cccccccceeeeeeccceeeccCCCchhHHHHHHHhhhcccccccchhhhHHHhhhhhHHHhhhccCCCcccchhhhhhh
Q psy4735 412 TNCFTKAYTHYAEGTGSVLSNLGDMTHIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEAQTQLSGEGEKKTHDEMVKD 491 (1232)
Q Consensus 412 ScCFTKGYGhYVEGTGSVLQ~~~d~t~~e~~~~~~~~~~~~~~~sS~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~~ 491 (1232)
++||||+|++|++|+||++....+++ +...+.
T Consensus 242 ~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~-------------------------------------------- 273 (343)
T 1g55_A 242 SVCFTKGYGSYIEGTGSVLQTAEDVQ----VENIYK-------------------------------------------- 273 (343)
T ss_dssp CCCCCTTTTTCCTTSCCEEECCSSCC----HHHHHH--------------------------------------------
T ss_pred cchhhccceeeecccccccccccccc----hhhccc--------------------------------------------
Confidence 99999999999999999986432211 000000
Q ss_pred hhhhhhHHHHHHHHHHhhhhccccccCCCcccccccCCCcccccccccccccccccccccccchhhhhhhccCccccccc
Q psy4735 492 AQNRADLEKKILDERVKDAQNRVDLEKNPEETVNDASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGAY 571 (1232)
Q Consensus 492 ~~~~~d~ek~~l~~~~k~a~~~~D~~~~~~d~~~d~~~~~~~~~~~~e~~~~e~~s~~~ar~~e~~a~~~~~~~~~~~~~ 571 (1232)
.+.
T Consensus 274 ----------------------------------------------------------------------~~~------- 276 (343)
T 1g55_A 274 ----------------------------------------------------------------------SLT------- 276 (343)
T ss_dssp ----------------------------------------------------------------------TTT-------
T ss_pred ----------------------------------------------------------------------ccc-------
Confidence 000
Q ss_pred ccccccchhhhhcchhhhhhhhhcCCCcccccHHHHHhhCCCCCCCCCCCCCCHHHHHHHhCCcccHHHHHHHHHHHhc
Q psy4735 572 QNQENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLC 650 (1232)
Q Consensus 572 ~~~~n~Vs~tl~~~~e~~~l~~LhplkLRyFTPREvARLQGFPDdF~FP~~IS~KQrYKLLGNSVnV~VVa~Lak~LL~ 650 (1232)
..........+|+.+.|+|||||+||||||||+|.||..++.+|+|+|+||||+|+|+++|++.|++
T Consensus 277 ------------~~~~~~~~~~~h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l~~ 343 (343)
T 1g55_A 277 ------------NLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE 343 (343)
T ss_dssp ------------TCCHHHHHHHHHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHHHC
T ss_pred ------------CCCCccceeccCCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHhC
Confidence 0000011335688899999999999999999999999778999999999999999999999999974
No 4
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=99.97 E-value=7.7e-32 Score=300.98 Aligned_cols=146 Identities=18% Similarity=0.274 Sum_probs=114.0
Q ss_pred hccCCCcccchhhhhccCCcEEEEEEcc-----cCCchHHHHHHHHHhCCCeeE---------EEEeCCCCCCCCcccce
Q psy4735 259 ESRTHAPCTVEPYVNCLHQTMICFINVL-----KNQLPYVCTTSMLTRAGFRFQ---------EFLLSPTQFGVPNSRTR 324 (1232)
Q Consensus 259 ~~R~~l~~~~v~~V~alrPr~~VfENV~-----K~~~~fkeIietLeslGY~Vq---------EfILNPaDFGVPQSR~R 324 (1232)
..|++||..|+++|+.++|++||||||. +++..|+.|++.|+++||.+. +.+|++.+| |||+|+|
T Consensus 202 D~R~~Lf~e~~riI~~~rPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~-vPQ~R~R 280 (482)
T 3me5_A 202 DTQGTLFFDVVRIIDARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHF-LPQHRER 280 (482)
T ss_dssp TTTTSHHHHHHHHHHHHCCSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGT-SSBCCEE
T ss_pred CccccHHHHHHHHHHHcCCcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeecccc-CCccceE
Confidence 5799999999999999999999999994 356789999999999999997 479999999 9999999
Q ss_pred EEEEEEeCCCCCCCCCcccccCCccccccccccccccCCCCccccchhhhccCCCCCcccccccccCHHHHh---h----
Q psy4735 325 YYLIAKRSPAAHSSEASFCFETSSELMTELPKLKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLL---R---- 397 (1232)
Q Consensus 325 YFLIAkRk~l~~sd~ndF~Fp~psqIl~e~Pk~~sksC~PIlsvkpLsDFLEedVDs~E~~eKYLLPDKLLe---R---- 397 (1232)
+||||+|+++. ....|.|+. +...+|. ...+|+++|++.++ ++|+++++++. +
T Consensus 281 ~fivg~r~~~~--~~~~F~~~~---~~~~~p~----------~~~~l~diLe~~~~-----~ky~l~~~~~~~l~~~~~~ 340 (482)
T 3me5_A 281 IVLVGFRRDLN--LKADFTLRD---ISECFPA----------QRVTLAQLLDPMVE-----AKYILTPVLWKYLYRYAKK 340 (482)
T ss_dssp EEEEEEEGGGC--CCTTCCGGG---GGGGSCS----------SCCCTGGGSCSSCC-----GGGBCCHHHHHHHHHHHHC
T ss_pred EEEEEEecCcc--cccCcCccc---cccccCC----------CcccHHHHhhcccc-----cccccCHHHHHHHHHHHHh
Confidence 99999999861 123566543 2233342 13479999998875 68999998764 2
Q ss_pred -----hcccceEeeCCCCccccccccceeeeee
Q psy4735 398 -----RFHVFDIVNGKASSTNCFTKAYTHYAEG 425 (1232)
Q Consensus 398 -----yG~lfDIVtPsSrRScCFTKGYGhYVEG 425 (1232)
.|+.++||.|++.+++|+|.++.+|..|
T Consensus 341 ~~~~g~gf~~~i~~~~~~~~~~~Ti~a~~~k~g 373 (482)
T 3me5_A 341 HQARGNGFGYGMVYPNNPQSVTRTLSARYYKDG 373 (482)
T ss_dssp ----------CEECTTSGGGGTCCBCCC---CC
T ss_pred hhcccCCcccceecCCcccccceeeEEeeeccC
Confidence 2567899999999999999999888655
No 5
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=99.96 E-value=1.1e-30 Score=268.97 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=72.4
Q ss_pred hccCCCcccchhhhhccCCcEEEEEEcc-----cCCchHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEeCC
Q psy4735 259 ESRTHAPCTVEPYVNCLHQTMICFINVL-----KNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 333 (1232)
Q Consensus 259 ~~R~~l~~~~v~~V~alrPr~~VfENV~-----K~~~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkRk~ 333 (1232)
..|+.||.+|+++|+.++|++|++|||. +++..|+.|++.|+++||.+.+++|||.+|||||+|+|+||||.|++
T Consensus 85 d~R~~L~~~~~r~i~~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~ 164 (331)
T 3ubt_Y 85 DPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKE 164 (331)
T ss_dssp CGGGHHHHHHHHHHHHHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGG
T ss_pred CchhHHHHHHHHHHhccCCeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCC
Confidence 5689999999999999999999999994 57889999999999999999999999999999999999999999987
Q ss_pred C
Q psy4735 334 A 334 (1232)
Q Consensus 334 l 334 (1232)
.
T Consensus 165 ~ 165 (331)
T 3ubt_Y 165 L 165 (331)
T ss_dssp G
T ss_pred C
Confidence 6
No 6
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=99.96 E-value=4.4e-31 Score=289.09 Aligned_cols=138 Identities=18% Similarity=0.222 Sum_probs=99.1
Q ss_pred hccCCCcccchhhhhc--------cCCcEEEEEEcc-----cCCchHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceE
Q psy4735 259 ESRTHAPCTVEPYVNC--------LHQTMICFINVL-----KNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRY 325 (1232)
Q Consensus 259 ~~R~~l~~~~v~~V~a--------lrPr~~VfENV~-----K~~~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RY 325 (1232)
..|+.||..|+++|+. .+|++|++|||. +++..|+.|++.|+++||.+.+++|+|.+|||||+|+|+
T Consensus 152 ~~r~~L~~~~~rii~~~~~k~~~~~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~ 231 (403)
T 4dkj_A 152 NTRSGLLWEIERILEEIKNSFSKEEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERV 231 (403)
T ss_dssp CCSGGGHHHHHHHHHHHHHHSCGGGSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEE
T ss_pred cccchhHHHHHHHHHHhhhhhccccCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEE
Confidence 3799999999999998 899999999995 245689999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCCCcccccCCccccccccccccccCCCCccccchhhhccCCCCCcccccccccCHHHHhhhcccceEe
Q psy4735 326 YLIAKRSPAAHSSEASFCFETSSELMTELPKLKSKTCNPLLSRMTLHSILDSTDPSDDLYRRYLVSDKDLLRRFHVFDIV 405 (1232)
Q Consensus 326 FLIAkRk~l~~sd~ndF~Fp~psqIl~e~Pk~~sksC~PIlsvkpLsDFLEedVDs~E~~eKYLLPDKLLeRyG~lfDIV 405 (1232)
||||.|++ |.||.+..... |... ....++|++|||.+.+ ++|+...+. ...+..
T Consensus 232 fiva~r~~--------f~fP~~~~~~~--~~~~------~~~~~~l~dile~~~~-----~~y~~~~~~-----~~~~~~ 285 (403)
T 4dkj_A 232 FCLSIRDD--------YLEKTGFKFKE--LEKV------KNPPKKIKDILVDSSN-----YKYLNLNKY-----ETTTFR 285 (403)
T ss_dssp EEEEEEHH--------HHHHHCCCCCC--GGGC------CCCCCCGGGGCCCCSC-----CCCCCCTTS-----CCCCCE
T ss_pred EEEEEcCC--------CCCCCcccccc--cccc------ccccccHHHHhccccc-----cccchhhhh-----cccccc
Confidence 99999975 56654431100 1000 0123579999987654 456643221 111122
Q ss_pred eCCCCccccccccceee
Q psy4735 406 NGKASSTNCFTKAYTHY 422 (1232)
Q Consensus 406 tPsSrRScCFTKGYGhY 422 (1232)
....+-..|++++|+.|
T Consensus 286 ~~~~~~~~~~~~~~~~~ 302 (403)
T 4dkj_A 286 ETKSNIISRPLKNYTTF 302 (403)
T ss_dssp ECTTSBEEEECTTSCSC
T ss_pred ccccchhcccccccccc
Confidence 22234457888888754
No 7
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=99.96 E-value=4.8e-30 Score=272.40 Aligned_cols=85 Identities=20% Similarity=0.339 Sum_probs=75.2
Q ss_pred hccCCCcccchhhhhccCCcEEEEEEcc-----cCCchHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEeCC
Q psy4735 259 ESRTHAPCTVEPYVNCLHQTMICFINVL-----KNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 333 (1232)
Q Consensus 259 ~~R~~l~~~~v~~V~alrPr~~VfENV~-----K~~~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkRk~ 333 (1232)
..|+.||.+|+++|+.++|++|++|||. +++..|+.|++.|+++||.+.+.+||+.+|||||+|+|+|+||.|.+
T Consensus 95 d~r~~L~~~~~r~i~~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~ 174 (327)
T 2c7p_A 95 DSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRND 174 (327)
T ss_dssp STTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGG
T ss_pred chhhHHHHHHHHHHHhccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCC
Confidence 4799999999999999999999999994 35678999999999999999999999999999999999999999987
Q ss_pred CCCCCCCcccccC
Q psy4735 334 AAHSSEASFCFET 346 (1232)
Q Consensus 334 l~~sd~ndF~Fp~ 346 (1232)
. ....|.||.
T Consensus 175 ~---~~~~~~fP~ 184 (327)
T 2c7p_A 175 L---NIQNFQFPK 184 (327)
T ss_dssp G---CCCCCCCCC
T ss_pred C---CcccccCCC
Confidence 5 112455654
No 8
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.95 E-value=3.8e-28 Score=278.92 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=72.3
Q ss_pred hccCCCcccchhhhhccCCcEEEEEEcc-----cCCchHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEeCC
Q psy4735 259 ESRTHAPCTVEPYVNCLHQTMICFINVL-----KNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 333 (1232)
Q Consensus 259 ~~R~~l~~~~v~~V~alrPr~~VfENV~-----K~~~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkRk~ 333 (1232)
..||.||..|++||+.++|++||+|||. +++..|+.|++.|.++||.+.+++|+|.+|||||+|+|+||||.|++
T Consensus 407 D~R~~L~~~~~riv~~~rPk~fvlENV~glls~~~g~~~~~il~~l~~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r~d 486 (784)
T 4ft4_B 407 DEKNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSS 486 (784)
T ss_dssp STTCHHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTCEEEEEEEEGGGGTCSSCCEEEEEEEECTT
T ss_pred CchhHHHHHHHHHHHHHCCCEEEEEecCCccccccchHHHHHHHHHHhCCCeeeeeecCHHHcCCCcccccceeeeeccC
Confidence 4699999999999999999999999994 47789999999999999999999999999999999999999999998
Q ss_pred C
Q psy4735 334 A 334 (1232)
Q Consensus 334 l 334 (1232)
.
T Consensus 487 ~ 487 (784)
T 4ft4_B 487 M 487 (784)
T ss_dssp S
T ss_pred C
Confidence 6
No 9
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.95 E-value=4e-28 Score=258.93 Aligned_cols=155 Identities=35% Similarity=0.640 Sum_probs=122.1
Q ss_pred ccccccCcccccccCCcccccccccccccCCCCCcccccccccChHHhhhcceeeeeeccCCCCccccccccceeeeccc
Q psy4735 890 APMMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNRKASSTNCFTKAYTHYAEGTG 969 (1232)
Q Consensus 890 ~pMmteLpkleaktc~~~~~~~~~~~~Ld~~~~~~~~y~~yllpdk~L~r~~~vlDIv~~~s~rS~CFTKgY~hYvEGTG 969 (1232)
+.++.++|+-... .++|++|||++++ ++|.+|++++ +|+.+|||++|.++++|||||||+||++|||
T Consensus 179 ~~~~~~~P~~~~~-------~~~l~d~Le~~~~-----~~y~~~~~~~-~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~g 245 (333)
T 4h0n_A 179 DEIITRLPKDFGV-------PHSLESIIEEDVD-----EKFLVPEKML-RCAKVFDICYKTSKRSCCFTKAYTHYADGTG 245 (333)
T ss_dssp SSCBSSCSSCCCS-------CCCSSTTCCSSCC-----GGGBCCHHHH-TTGGGCCEECTTCSCCCCCCTTBTTBSSSSC
T ss_pred cchhhhCCCCccc-------cccHHHHhccCCc-----ccccCCHHHH-HHHHHhccCChhhhhhhhhccccceEEeccC
Confidence 4556666643333 3488999999865 7899999988 9999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHHHHHhhhhhcccCCCchhhhhhhhcccccccccccCCcchhHHHHHHHHhhhhhhhhhhhchhhh
Q psy4735 970 SVLSNLGDMTQIEEIIEKCKHLKQQIDNSSTDETKAKKIKLDVEDTETQFGDEGEREILDEMVKDAQNRVNLEKKTLDEK 1049 (1232)
Q Consensus 970 SVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1232)
|+|....+ ++...++.. +..
T Consensus 246 s~~~~~~~-~~~~~~~~~---~~~-------------------------------------------------------- 265 (333)
T 4h0n_A 246 SIFTDKPR-EVVQKCYAA---AAQ-------------------------------------------------------- 265 (333)
T ss_dssp CEECSSCH-HHHHHHHHH---GGG--------------------------------------------------------
T ss_pred ceeccccc-cchhhhhcc---ccc--------------------------------------------------------
Confidence 99975432 122211111 000
Q ss_pred hcccccchhHHHHHHhhhhhhhhccccCCCccccccccCCcccccccchhhhhhhhhhhhhhccCCCCCcCCccCCCccc
Q psy4735 1050 VNDTLNQDDLVEKELLNEKVNDTLNKANSKDITTNVTGTNQNEAKSKHVTEIARTNEREAKREDISPNVTGANQRDGSVN 1129 (1232)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1232)
T Consensus 266 -------------------------------------------------------------------------------- 265 (333)
T 4h0n_A 266 -------------------------------------------------------------------------------- 265 (333)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccCCCCcccccccccccccccccccccccHHHHHHHHhcCCcccCCHHHHHhhcCCCCCCcCCCCCChhhHHHHhC
Q psy4735 1130 ALGTNENAGNSVTTTRTNQNEESSVNTLETNQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLG 1209 (1232)
Q Consensus 1130 ~~~~~~~~~~~~~~Trr~rv~~~~a~tl~t~~~ee~~l~~L~~lkLR~FTPRE~ARLqGFPddF~FPe~vS~kQ~YKQLG 1209 (1232)
. ..+++..+..++..++|+||||||+||||||++|.||..+|++|+|||+|
T Consensus 266 -------------------~----------~~G~~~~~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~G 316 (333)
T 4h0n_A 266 -------------------N----------EIGGEKFVELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLG 316 (333)
T ss_dssp -------------------S----------CTTCHHHHHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHH
T ss_pred -------------------C----------CCCcccceeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhC
Confidence 0 00123345556788999999999999999999999998899999999999
Q ss_pred CceehHHHHHHHHHHhc
Q psy4735 1210 NSINVHVVAYCICLMLC 1226 (1232)
Q Consensus 1210 NSVnV~VV~~Lak~Ll~ 1226 (1232)
|||+|+||++|++.|++
T Consensus 317 Nsv~v~v~~~i~~~l~~ 333 (333)
T 4h0n_A 317 NSVNVKVISELLKILFE 333 (333)
T ss_dssp TSCCHHHHHHHHHHHHC
T ss_pred CccCHHHHHHHHHHHhC
Confidence 99999999999999985
No 10
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=99.94 E-value=2.4e-27 Score=256.18 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=70.5
Q ss_pred HhccCCCcccchhhhhccCCcEEEEEEcc-----cCCchHHHHHHHHHhCCCee-EEEEeCCCCCCCCcccceEEEEEEe
Q psy4735 258 VESRTHAPCTVEPYVNCLHQTMICFINVL-----KNQLPYVCTTSMLTRAGFRF-QEFLLSPTQFGVPNSRTRYYLIAKR 331 (1232)
Q Consensus 258 ~~~R~~l~~~~v~~V~alrPr~~VfENV~-----K~~~~fkeIietLeslGY~V-qEfILNPaDFGVPQSR~RYFLIAkR 331 (1232)
-..|+.||.+|+++|+.++|++||||||. +++.+|+.|+ .|+++||.+ .+.+|+|.+|||||+|+|+||||.|
T Consensus 93 ~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v~~~~vl~a~dyGvPQ~R~R~~iig~r 171 (376)
T 3g7u_A 93 DDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDILDPIKVKASDYGAPTIRTRYFFIGVK 171 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEECCCEEEEGGGGTCSBCCEEEEEEEEE
T ss_pred CCchHHHHHHHHHHHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCccCcEEEEEHhhCCCCCCCcEEEEEEEe
Confidence 35689999999999999999999999994 3566899999 999999999 9999999999999999999999999
Q ss_pred CCC
Q psy4735 332 SPA 334 (1232)
Q Consensus 332 k~l 334 (1232)
.+.
T Consensus 172 ~~~ 174 (376)
T 3g7u_A 172 KSL 174 (376)
T ss_dssp GGG
T ss_pred CCC
Confidence 886
No 11
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.92 E-value=4.1e-26 Score=243.24 Aligned_cols=59 Identities=34% Similarity=0.603 Sum_probs=54.9
Q ss_pred HHhcCCcccCCHHHHHhhcCCCCCCcCC-CCCChhhHHHHhCCceehHHHHHHHHHHhcC
Q psy4735 1169 ELKRLNLRYFSPDEIRKLMCFPDECRFP-PDCSDKSRYKLLGNSINVHVVAYCICLMLCE 1227 (1232)
Q Consensus 1169 ~L~~lkLR~FTPRE~ARLqGFPddF~FP-e~vS~kQ~YKQLGNSVnV~VV~~Lak~Ll~d 1227 (1232)
.+++.++|+||||||+||||||++|.|| +.+|.+|+|||+||||+|+||++|++.|++.
T Consensus 265 ~~~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~ 324 (327)
T 3qv2_A 265 DLLNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDD 324 (327)
T ss_dssp GGTTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTT
T ss_pred eecCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHH
Confidence 3467789999999999999999999999 7899999999999999999999999999863
No 12
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.88 E-value=1.1e-22 Score=243.55 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=72.1
Q ss_pred HhccCCCcccchhhhhccCCcEEEEEEcc-----cCCchHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEeC
Q psy4735 258 VESRTHAPCTVEPYVNCLHQTMICFINVL-----KNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 332 (1232)
Q Consensus 258 ~~~R~~l~~~~v~~V~alrPr~~VfENV~-----K~~~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkRk 332 (1232)
-..|+.||..|+++|+.++|++||||||. +++..|+.|++.|+++||.+.+.+|+|.+|||||+|+|+||||.|.
T Consensus 643 ~d~R~~L~~~~~riv~~~rPk~~llENV~glls~~~~~~~~~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fiva~r~ 722 (1002)
T 3swr_A 643 SKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAP 722 (1002)
T ss_dssp HHHTTSHHHHHHHHHHHHCCSEEEEEEEGGGGTTGGGHHHHHHHHHHHHHTCEEEEEEEEGGGGTCSBCCEEEEEEEECT
T ss_pred cchhhHHHHHHHHHHHHhCCCEEEEeccHHHhccCcchHHHHHHHHHHhcCCeEEEEEEEHHHCCCCccceEEEEEEEeC
Confidence 45799999999999999999999999994 3567899999999999999999999999999999999999999998
Q ss_pred CC
Q psy4735 333 PA 334 (1232)
Q Consensus 333 ~l 334 (1232)
+.
T Consensus 723 g~ 724 (1002)
T 3swr_A 723 GE 724 (1002)
T ss_dssp TS
T ss_pred CC
Confidence 76
No 13
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.87 E-value=3.6e-22 Score=244.00 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=71.6
Q ss_pred HhccCCCcccchhhhhccCCcEEEEEEcc-----cCCchHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEeC
Q psy4735 258 VESRTHAPCTVEPYVNCLHQTMICFINVL-----KNQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 332 (1232)
Q Consensus 258 ~~~R~~l~~~~v~~V~alrPr~~VfENV~-----K~~~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkRk 332 (1232)
-..|+.||..|+++|+.++|++||||||. +++..|+.|++.|+++||.+.+.+|||.+|||||+|+|+||||.+.
T Consensus 954 ~d~R~~L~~~~lriv~~~rPk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r~ 1033 (1330)
T 3av4_A 954 SKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAP 1033 (1330)
T ss_dssp HHHHHSHHHHHHHHHHHHCCSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEEEECT
T ss_pred cchhhHHHHHHHHHHHHhcCcEEEEeccHHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEEEecC
Confidence 34689999999999999999999999994 4667899999999999999999999999999999999999999998
Q ss_pred CC
Q psy4735 333 PA 334 (1232)
Q Consensus 333 ~l 334 (1232)
+.
T Consensus 1034 ~~ 1035 (1330)
T 3av4_A 1034 GE 1035 (1330)
T ss_dssp TS
T ss_pred CC
Confidence 75
No 14
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.86 E-value=3.6e-22 Score=210.73 Aligned_cols=61 Identities=21% Similarity=0.145 Sum_probs=56.0
Q ss_pred cCCCcccccHHHHHhhCCCCCCCCCCCCCCHHHHHHHhCCcccHHHHHHHHHHHhcCCCCc
Q psy4735 595 KRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAYCICLMLCEPAPM 655 (1232)
Q Consensus 595 hplkLRyFTPREvARLQGFPDdF~FP~~IS~KQrYKLLGNSVnV~VVa~Lak~LL~~~~~~ 655 (1232)
++.+.|+|||||+||||||||+|.|+...+.+++|+|+||||+|+|++.|++.|.+.++|.
T Consensus 235 ~~~~~R~lt~rE~arlqgFPd~~~~~~~~s~~~~~~qiGNaVpv~~~~~i~~~i~~~l~~~ 295 (295)
T 2qrv_A 235 MNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV 295 (295)
T ss_dssp ETTEEECCCHHHHHHHHTCCTTTTCCTTCCHHHHHHHHHTSCCHHHHHHHHGGGGGGSCBC
T ss_pred cCCCcCCCCHHHHHHHcCCCHHHeeCCCcCHHHHhccEecCcCHHHHHHHHHHHHHHhcCC
Confidence 3457799999999999999999999988899999999999999999999999999887763
No 15
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=99.86 E-value=4.6e-22 Score=211.46 Aligned_cols=57 Identities=53% Similarity=0.832 Sum_probs=53.2
Q ss_pred HhcCCcccCCHHHHHhhcCCCCCCcCCCCCChhhHHHHhCCceehHHHHHHHHHHhc
Q psy4735 1170 LKRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLC 1226 (1232)
Q Consensus 1170 L~~lkLR~FTPRE~ARLqGFPddF~FPe~vS~kQ~YKQLGNSVnV~VV~~Lak~Ll~ 1226 (1232)
++..+.|+||||||||||||||+|+||...|.+|+|||+||||+|+||++|++.|++
T Consensus 287 ~h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l~~ 343 (343)
T 1g55_A 287 LLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE 343 (343)
T ss_dssp HHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHHHC
T ss_pred cCCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHhC
Confidence 466788999999999999999999999767999999999999999999999999974
No 16
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=99.50 E-value=3e-14 Score=159.87 Aligned_cols=52 Identities=35% Similarity=0.481 Sum_probs=47.5
Q ss_pred CCcccCCHHHHHhhcCCC----CCCcCCCCCChhhHHHHhCCceehHHHHHHHHHHhc
Q psy4735 1173 LNLRYFSPDEIRKLMCFP----DECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLC 1226 (1232)
Q Consensus 1173 lkLR~FTPRE~ARLqGFP----ddF~FPe~vS~kQ~YKQLGNSVnV~VV~~Lak~Ll~ 1226 (1232)
.++|+||||||+|||||| ++|.|+ +|++|+|||+||||+|+|+++|++.|.+
T Consensus 399 ~~~R~lTprE~~rlqgFp~~~~~~~~~~--~s~~~~y~q~GNsV~v~v~~~i~~~l~~ 454 (482)
T 3me5_A 399 HRPRRLTPRECARLMGFEAPGEAKFRIP--VSDTQAYRQFGNSVVVPVFAAVAKLLEP 454 (482)
T ss_dssp GCCEECCHHHHHHHHTSSCTTCCCSCCC--SCHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHcCCCCccccceecc--CCHHHHHHHcCCccChHHHHHHHHHHHH
Confidence 478999999999999999 567776 7999999999999999999999998864
No 17
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=99.42 E-value=6.1e-14 Score=144.86 Aligned_cols=52 Identities=23% Similarity=0.310 Sum_probs=47.9
Q ss_pred CcccCCHHHHHhhcCCCCCCcCCCCCChhhHHHHhCCceehHHHHHHHHHHhc
Q psy4735 1174 NLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLC 1226 (1232)
Q Consensus 1174 kLR~FTPRE~ARLqGFPddF~FPe~vS~kQ~YKQLGNSVnV~VV~~Lak~Ll~ 1226 (1232)
..|+||||||||||||||+|.|+. .+.+|+|||+||||+|+|+++|++.|.+
T Consensus 271 ~~R~LT~rE~aRLQgFPd~f~f~~-~s~~~~ykqiGNAVpp~la~~I~~~I~~ 322 (331)
T 3ubt_Y 271 LYRRLTVRECARVQGFPDDFIFHY-ESLNDGYKMIGNAVPVNLAYEIAKTIKS 322 (331)
T ss_dssp GCCBCBHHHHHHHHTCCTTCCCCC-SBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred cCcCCCHHHHHHhCCCCCCCEeCC-CCHHHHhhhCccCccHHHHHHHHHHHHH
Confidence 469999999999999999999984 4899999999999999999999998764
No 18
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=99.37 E-value=8.9e-14 Score=152.97 Aligned_cols=58 Identities=24% Similarity=0.243 Sum_probs=50.7
Q ss_pred cCCccccCHHHHHhhcCCCC-CCCCCC---CCChhHHHHHhCCceehHHHHHHHHHhccCCccccccCc
Q psy4735 833 RLNLRYFSPDEIRKLMCFPD-DCRFPP---DCSDKSRYKLLGNSINVHVVAYCICLMLCEPAPMMTELP 897 (1232)
Q Consensus 833 ~~glR~LTPREcaRLqGFPd-dF~fP~---~iS~~Q~YkqlGNSVsVpVV~~la~~l~~~~~pMmteLp 897 (1232)
..++|+||||||+||||||+ +|.++. .+|++|+|+|+||||+|||+++|++ .|...|.
T Consensus 332 ~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~-------~i~~~l~ 393 (403)
T 4dkj_A 332 QQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFN-------TLEFVNN 393 (403)
T ss_dssp TTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHHH-------TCCCCCC
T ss_pred CCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHHH-------HHHHHHh
Confidence 35799999999999999999 798862 2699999999999999999999999 5555554
No 19
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.32 E-value=4.1e-13 Score=142.07 Aligned_cols=55 Identities=20% Similarity=0.194 Sum_probs=50.9
Q ss_pred cCCcccCCHHHHHhhcCCCCCCcCCCCCChhhHHHHhCCceehHHHHHHHHHHhc
Q psy4735 1172 RLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLC 1226 (1232)
Q Consensus 1172 ~lkLR~FTPRE~ARLqGFPddF~FPe~vS~kQ~YKQLGNSVnV~VV~~Lak~Ll~ 1226 (1232)
..+.|+|||||||||||||++|.|+...|++++|||+||||+|+|+++|++.|.+
T Consensus 236 ~~~~R~lt~rE~arlqgFPd~~~~~~~~s~~~~~~qiGNaVpv~~~~~i~~~i~~ 290 (295)
T 2qrv_A 236 NEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKE 290 (295)
T ss_dssp TTEEECCCHHHHHHHHTCCTTTTCCTTCCHHHHHHHHHTSCCHHHHHHHHGGGGG
T ss_pred CCCcCCCCHHHHHHHcCCCHHHeeCCCcCHHHHhccEecCcCHHHHHHHHHHHHH
Confidence 3467999999999999999999999777889999999999999999999998865
No 20
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=99.32 E-value=7.6e-13 Score=141.07 Aligned_cols=51 Identities=27% Similarity=0.446 Sum_probs=47.4
Q ss_pred CCccccCHHHHHhhcCCCCCCCCCCCCChhHHHHHhCCceehHHHHHHHHHhc
Q psy4735 834 LNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAYCICLML 886 (1232)
Q Consensus 834 ~glR~LTPREcaRLqGFPddF~fP~~iS~~Q~YkqlGNSVsVpVV~~la~~l~ 886 (1232)
...|+||||||||||||||+|.|+ .|.+++|+|+||||.|+|+++||+.|+
T Consensus 269 ~~~R~LT~rE~aRLQgFPd~f~f~--gs~~~~ykqIGNAVp~~l~~~Ia~~i~ 319 (327)
T 2c7p_A 269 GKTRKLHPRECARVMGYPDSYKVH--PSTSQAYKQFGNSVVINVLQYIAYNIG 319 (327)
T ss_dssp TEEEECCHHHHHHHTTCCTTSCCC--SSHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHCCCCcCcEeC--CCHHHHHhHccCCCCHHHHHHHHHHHH
Confidence 468999999999999999999997 499999999999999999999999654
No 21
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.27 E-value=2.3e-12 Score=148.81 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=57.6
Q ss_pred ceecccccccccCcceeEeeccchhHHHHHhhcCCccccCHHHHHhhcCCCCCCCCCCCCChhHHHHHhCCceehHHHHH
Q psy4735 801 SVTTTRTNQNEENGVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAY 880 (1232)
Q Consensus 801 ~~~~t~t~q~~~~g~n~~l~~~~~~~~~~~L~~~glR~LTPREcaRLqGFPddF~fP~~iS~~Q~YkqlGNSVsVpVV~~ 880 (1232)
...+|+|+.....|..+ +|....|+||||||||||||||+|.|+. |.+++|+|+||||.|||+++
T Consensus 668 ~ps~TItt~~~~~~~~~-------------iHp~~~R~LTpRE~ARLQgFPD~y~f~G--s~~~~ykQIGNAVpp~lA~a 732 (784)
T 4ft4_B 668 ETVPTVVTRAEPHNQVI-------------IHPTQARVLTIRENARLQGFPDYYRLFG--PIKEKYIQVGNAVAVPVARA 732 (784)
T ss_dssp CCCSCCCSCCCSSSSEE-------------ECSSSSSBCCHHHHHHHTTCCTTCCCCS--CHHHHHHHHHHSCCHHHHHH
T ss_pred CcccceeccccCCCCee-------------cCCCCCcCCcHHHHHHHCCCCCCCEeCC--CHHHHHhhccCCCCHHHHHH
Confidence 34566676665555433 2455789999999999999999999965 99999999999999999999
Q ss_pred HHHHh
Q psy4735 881 CICLM 885 (1232)
Q Consensus 881 la~~l 885 (1232)
||+.|
T Consensus 733 Ig~~I 737 (784)
T 4ft4_B 733 LGYCL 737 (784)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99865
No 22
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=99.17 E-value=1.2e-11 Score=134.36 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=49.2
Q ss_pred hcCCcccCCHHHHHhhcCCCCCCcCCCCCChhhHHHHhCCceehHHHHHHHHHHhc
Q psy4735 1171 KRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLC 1226 (1232)
Q Consensus 1171 ~~lkLR~FTPRE~ARLqGFPddF~FPe~vS~kQ~YKQLGNSVnV~VV~~Lak~Ll~ 1226 (1232)
+....|.||+||+||||||||+|.|. .+.+++|||+||||+|.++++|++.|.+
T Consensus 312 HP~~~R~lTvRE~ARlQsFPD~f~f~--g~~~~~~~qIGNAVPp~la~aia~~I~~ 365 (376)
T 3g7u_A 312 HPYHPRVITPREAARLQGFPDWFRFH--VTKWHSFRQIGNSVSPIVAEYILKGLYN 365 (376)
T ss_dssp CSSSSSBCCHHHHHHHHTCCTTCCCC--SSHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCccCcCCCHHHHHHhCCCCcceEEC--CChHHhheeeecCCCHHHHHHHHHHHHH
Confidence 45566999999999999999999998 6899999999999999999999988754
No 23
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=98.88 E-value=6.7e-10 Score=137.18 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=49.2
Q ss_pred hcCCcccCCHHHHHhhcCCCCCCcCCCCCChhhHHHHhCCceehHHHHHHHHHHhc
Q psy4735 1171 KRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLC 1226 (1232)
Q Consensus 1171 ~~lkLR~FTPRE~ARLqGFPddF~FPe~vS~kQ~YKQLGNSVnV~VV~~Lak~Ll~ 1226 (1232)
+....|.||+||+||||||||+|.|. .+.+++|||+||||+|+|+.+|++.|.+
T Consensus 1253 HP~q~R~LTVREaARLQsFPDdF~F~--Gs~t~~yrQIGNAVPPlLAkAIA~~I~~ 1306 (1330)
T 3av4_A 1253 HPEQHRVVSVRECARSQGFPDSYRFF--GNILDRHRQVGNAVPPPLAKAIGLEIKL 1306 (1330)
T ss_dssp CSSSSSBCCHHHHHHHTTCCTTCCCC--SSHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred CccccccCCHHHHHHhcCCCCCeEEC--CCHhhhhEEeEeCcCHHHHHHHHHHHHH
Confidence 44456999999999999999999998 5899999999999999999999998764
No 24
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=98.72 E-value=4.9e-09 Score=126.78 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=49.2
Q ss_pred hcCCcccCCHHHHHhhcCCCCCCcCCCCCChhhHHHHhCCceehHHHHHHHHHHhc
Q psy4735 1171 KRLNLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAYCICLMLC 1226 (1232)
Q Consensus 1171 ~~lkLR~FTPRE~ARLqGFPddF~FPe~vS~kQ~YKQLGNSVnV~VV~~Lak~Ll~ 1226 (1232)
+....|.||+||+||||||||+|.|. .+..++|||+||||+++|+.+|++.|.+
T Consensus 943 Hp~~~R~lt~rE~arlQ~fPd~~~f~--g~~~~~~~qiGNaVp~~~~~~i~~~i~~ 996 (1002)
T 3swr_A 943 HPEQHRVVSVRECARSQGFPDTYRLF--GNILDKHRQVGNAVPPPLAKAIGLEIKL 996 (1002)
T ss_dssp CSSSSSBCCHHHHHHHTTCCTTCCCC--SSHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred CcccccCCCHHHHHHhCCCCcceEEc--CChHHHheeeeccCCHHHHHHHHHHHHH
Confidence 44567999999999999999999997 6899999999999999999999988764
No 25
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=98.22 E-value=2.3e-07 Score=102.97 Aligned_cols=68 Identities=7% Similarity=0.072 Sum_probs=52.7
Q ss_pred ccCCCcccchhhhhccCCc-------EEEEEEcccCC-chHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEe
Q psy4735 260 SRTHAPCTVEPYVNCLHQT-------MICFINVLKNQ-LPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKR 331 (1232)
Q Consensus 260 ~R~~l~~~~v~~V~alrPr-------~~VfENV~K~~-~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkR 331 (1232)
.||.||.+|+|+|+.++|+ +|+||||..=. .....|.+.|+ +.+.|||+.+|||||.|+| ++|.+
T Consensus 255 ~Rg~Lf~ef~Riv~~~rPk~~~~~P~~fv~ENV~gL~~~~~~~i~~~L~-----v~~~VLnA~dyGVPQrRrR--f~g~~ 327 (386)
T 2pv0_B 255 PPSWYLFQFHRLLQYARPKPGSPGPFFWMFVDNLVLNKEDLDVASRFLE-----MEPVTIPDVHGGSLQNAVR--VWSNI 327 (386)
T ss_dssp CTHHHHHHHHHHHHHHSCCSSCCSCCEEEEEECSCSCHHHHHHHHHHTT-----SCCCEEECCCSSSCCCEEE--EEECS
T ss_pred CcchHHHHHHHHHHHhCCCcccCCCcEEEEEechhhhhcchHHHHHHHc-----CCeEEEEccccCccccccE--EEEEC
Confidence 5999999999999999998 99999996421 11334444443 4567999999999999999 45776
Q ss_pred CCC
Q psy4735 332 SPA 334 (1232)
Q Consensus 332 k~l 334 (1232)
.+.
T Consensus 328 ~~~ 330 (386)
T 2pv0_B 328 PAI 330 (386)
T ss_dssp SSS
T ss_pred CCc
Confidence 654
No 26
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=98.01 E-value=3e-06 Score=88.75 Aligned_cols=68 Identities=6% Similarity=0.017 Sum_probs=46.8
Q ss_pred ccCCCcccchhhhhccCCc-------EEEEEEcccCCc-hHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEe
Q psy4735 260 SRTHAPCTVEPYVNCLHQT-------MICFINVLKNQL-PYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKR 331 (1232)
Q Consensus 260 ~R~~l~~~~v~~V~alrPr-------~~VfENV~K~~~-~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkR 331 (1232)
.||.||.+|+|+|+.++|+ +|++|||..=.. ....|.+.| +. ...+|++.+||+||.| |+|+ |.+
T Consensus 99 ~rg~Lf~ef~Riv~~~rPk~~~~~P~~fv~ENV~gL~~~~~~~i~~~l-~~----~~~vLnA~dfgvpQrR-r~f~-g~~ 171 (230)
T 2qrv_B 99 PPSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDLDVASRFL-EM----EPVTIPDVHGGSLQNA-VRVW-SNI 171 (230)
T ss_dssp CTHHHHHHHHHHHHHHCCCSSCCSCCEEEEEECSCSCHHHHHHHHHHH-TS----CCEECCCCCSCC-----CEEE-ECS
T ss_pred CCchHHHHHHHHHHHHCcCcccCCCcEEEEeccHHhhhccHHHHHHHH-cC----CcEEEEcccCCcCccc-EEEE-eec
Confidence 3999999999999999999 899999963111 234555555 33 4568999999999999 5554 665
Q ss_pred CCC
Q psy4735 332 SPA 334 (1232)
Q Consensus 332 k~l 334 (1232)
.+.
T Consensus 172 ~~~ 174 (230)
T 2qrv_B 172 PAI 174 (230)
T ss_dssp TTS
T ss_pred CCC
Confidence 543
No 27
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=30.66 E-value=1.3e+02 Score=27.48 Aligned_cols=45 Identities=7% Similarity=-0.029 Sum_probs=34.5
Q ss_pred CCchHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEeC
Q psy4735 288 NQLPYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 332 (1232)
Q Consensus 288 ~~~~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkRk 332 (1232)
.......+.+.|++.||.+.+..-.-.....+....+++++++|.
T Consensus 151 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 151 RGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp SSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred CCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 335688999999999999987766555556667788888888763
No 28
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=20.56 E-value=1.8e+02 Score=27.74 Aligned_cols=42 Identities=10% Similarity=-0.032 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhCCCeeEEEEeCCCCCCCCcccceEEEEEEeC
Q psy4735 291 PYVCTTSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 332 (1232)
Q Consensus 291 ~fkeIietLeslGY~VqEfILNPaDFGVPQSR~RYFLIAkRk 332 (1232)
+.+++.+.|+++||.+.+..-....--......|+++||+|.
T Consensus 204 ~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 204 KEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp CHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred CHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 689999999999999876654322212233567899999875
Done!