RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4735
(1232 letters)
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 343
Score = 63.9 bits (154), Expect = 4e-11
Identities = 38/128 (29%), Positives = 58/128 (45%)
Query: 516 LEKNPEETVNDASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGAYQNQE 575
LE + + +++ + T + + T + E A Q
Sbjct: 209 LEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQV 268
Query: 576 NSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNS 635
++ L N ++ + +L L LRYF+P EI L+ FP E FP + K RY+LLGNS
Sbjct: 269 ENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNS 328
Query: 636 INVHVVAY 643
+NVHVVA
Sbjct: 329 LNVHVVAK 336
Score = 63.6 bits (153), Expect = 4e-11
Identities = 54/315 (17%), Positives = 100/315 (31%), Gaps = 11/315 (3%)
Query: 569 GAYQNQENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKAR 628
A + N LL + + + +E +L D P C R
Sbjct: 30 AAIDVNTVANEVYKYNFPHTQLLAK----TIEGITLEEFDRLSF--DMILMSPPCQPFTR 83
Query: 629 YKLLGNSINVHVVAYCIC---LMLCEPAPMIDNSSTDETKAKKIKLDVEDTETQFGDEGE 685
G+ + ++ L + P + K ++ + + G
Sbjct: 84 IGRQGDMTDSRTNSFLHILDILPRLQKLPKYI--LLENVKGFEVSSTRDLLIQTIENCGF 141
Query: 686 REILDEMVKDAQNRVDLEKKTLDEKVNDTLNQDDLVEKELLNGKVNDTLNKANSKDITTD 745
+ + + + + + ++L +++ N +D
Sbjct: 142 QYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIEIHRKNQQDSDLS 201
Query: 746 VTGTNQNEAKSKQVTDIARTNESEAKREDISPNVMGAYQKDGSVTALGTNENAGNSVTTT 805
V V +S + + V ++ T + G
Sbjct: 202 VKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQ 261
Query: 806 RTNQNEENGVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDDCRFPPDCSDKSR 865
+ + L N ++ + +L L LRYF+P EI L+ FP + FP + K R
Sbjct: 262 TAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQR 321
Query: 866 YKLLGNSINVHVVAY 880
Y+LLGNS+NVHVVA
Sbjct: 322 YRLLGNSLNVHVVAK 336
Score = 60.9 bits (146), Expect = 3e-10
Identities = 27/46 (58%), Positives = 32/46 (69%)
Query: 1174 NLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAY 1219
LRYF+P EI L+ FP E FP + K RY+LLGNS+NVHVVA
Sbjct: 291 KLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAK 336
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
haemolyticus [TaxId: 726]}
Length = 327
Score = 52.3 bits (124), Expect = 2e-07
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 835 NLRYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAY 880
R P E ++M +PD + P S YK GNS+ ++V+ Y
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHP--STSQAYKQFGNSVVINVLQY 313
Score = 50.8 bits (120), Expect = 5e-07
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 1174 NLRYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAY 1219
R P E ++M +PD + P S YK GNS+ ++V+ Y
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHP--STSQAYKQFGNSVVINVLQY 313
Score = 50.0 bits (118), Expect = 9e-07
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 598 NLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLGNSINVHVVAY 643
R P E ++M +PD + P S YK GNS+ ++V+ Y
Sbjct: 270 KTRKLHPRECARVMGYPDSYKVHP--STSQAYKQFGNSVVINVLQY 313
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius
[TaxId: 197575]}
Length = 324
Score = 51.6 bits (122), Expect = 3e-07
Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 2/130 (1%)
Query: 515 DLEKNPEETVN-DASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGAYQN 573
DL+ NP ++ + +N N E + ++R + A+G
Sbjct: 187 DLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQ 246
Query: 574 QENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLLG 633
+L E K R + E ++ FPD+ F + S YK++G
Sbjct: 247 LHPQAPVMLKVSKNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIFHYE-SLNDGYKMIG 305
Query: 634 NSINVHVVAY 643
N++ V++
Sbjct: 306 NAVPVNLAYE 315
Score = 49.2 bits (116), Expect = 2e-06
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 837 RYFSPDEIRKLMCFPDDCRFPPDCSDKSRYKLLGNSINVHVVAY 880
R + E ++ FPDD F + S YK++GN++ V++
Sbjct: 273 RRLTVRECARVQGFPDDFIFHYE-SLNDGYKMIGNAVPVNLAYE 315
Score = 47.3 bits (111), Expect = 6e-06
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 1176 RYFSPDEIRKLMCFPDECRFPPDCSDKSRYKLLGNSINVHVVAY 1219
R + E ++ FPD+ F + S YK++GN++ V++
Sbjct: 273 RRLTVRECARVQGFPDDFIFHYE-SLNDGYKMIGNAVPVNLAYE 315
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA
polymerases {Bacteriophage T4 [TaxId: 10665]}
Length = 372
Score = 30.6 bits (68), Expect = 1.1
Identities = 9/134 (6%), Positives = 34/134 (25%)
Query: 573 NQENSVNTLLANQNEATLLQELKRLNLRYFSPDEIRKLMCFPDECQFPPDCSDKARYKLL 632
++ E + + +++ ++
Sbjct: 201 WEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYS 260
Query: 633 GNSINVHVVAYCICLMLCEPAPMIDNSSTDETKAKKIKLDVEDTETQFGDEGEREILDEM 692
+ +++ P S + + KK KL + + + + +
Sbjct: 261 IDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYN 320
Query: 693 VKDAQNRVDLEKKT 706
+ D ++ ++K
Sbjct: 321 IIDVESVQAIDKIR 334
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
tuberculosis, GroEL2 [TaxId: 1773]}
Length = 184
Score = 29.8 bits (67), Expect = 1.2
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 975 LGDMTQIEEIIEKCKHLKQQIDNSSTDETKAK 1006
+ + I + ++Q+I+NS +D + K
Sbjct: 142 VEGAGDTDAIAGRVAQIRQEIENSDSDYDREK 173
>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa
(Medicago sativa) [TaxId: 3879]}
Length = 101
Score = 27.9 bits (62), Expect = 2.4
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 894 TELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYR-----RYLVSDKD 936
++P K L+ + +G + + Y LV D
Sbjct: 54 LQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSD 101
>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId:
7130]}
Length = 166
Score = 28.7 bits (64), Expect = 2.9
Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 12/131 (9%)
Query: 474 TQLSGEGEKKTHDEMVKDAQNRADLEKKILDERVKDAQNRV------------DLEKNPE 521
TQ + K D +++ + + + + A+ + +L K
Sbjct: 36 TQDFNKALKDGSDSVLQQLSAFSSSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHP 95
Query: 522 ETVNDASNSNVITTNITEINQNETKSKHIARTNESEAKREEIAPNATGAYQNQENSVNTL 581
+ +A+ + E++ + E +++AP AY + +
Sbjct: 96 DVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAYDDFVKHAEEV 155
Query: 582 LANQNEATLLQ 592
+EA Q
Sbjct: 156 QKKLHEAATKQ 166
>d2fcwa1 a.13.1.1 (A:216-320) alpha-2-Macroglobulin receptor
associated protein (RAP) {Human (Homo sapiens) [TaxId:
9606]}
Length = 105
Score = 26.8 bits (59), Expect = 5.7
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 435 DMTHIEDIIEKCKHLKQQTDISSTHETKAKKMRLNEEAQTQLSGEGEKKTHDEMVKDAQN 494
++ H E IEK H ++Q +I+ HE + + + S E +
Sbjct: 31 ELKHFEAKIEKHNHYQKQLEIA--HEKLRHAESVGDGERVSRSREKHALLEGRTKELGYT 88
Query: 495 ----RADLEKKILDER 506
DL +I R
Sbjct: 89 VKKHLQDLSGRISRAR 104
>d1g6ea_ b.11.1.6 (A:) Antifungal protein AFP1 {Streptomyces tendae,
tu901 [TaxId: 1932]}
Length = 87
Score = 26.5 bits (58), Expect = 7.0
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 716 NQDDLVEKELLNGKVNDTLNKANSKDITTDVTGTNQNEAKSKQVTDIARTNESEAKREDI 775
N++ +E + N + DTL AN+ + + G N E+ + VT + N S+ + E I
Sbjct: 8 NENSYLE--IHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETI 65
Query: 776 SPNVMGAYQ 784
+ G++
Sbjct: 66 TLQKWGSWN 74
>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1, BAG1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 26.7 bits (59), Expect = 7.8
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 973 SNLGDMTQIEEIIEKCKHLKQQIDNSSTDETKAKKIKLDVEDTETQFGDEGEREILDEMV 1032
S Q+EE+ ++ ++Q K+ V+ T QF E +D ++
Sbjct: 19 SVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQF--MKILEEIDTLI 76
Query: 1033 -KDAQNRVNLEKKTLDEKVNDTLNQDDLVEKELLNE 1067
+ L++K L +KV L + D VE+ + E
Sbjct: 77 LPENFKDSRLKRKGLVKKVQAFLAECDTVEQNICQE 112
>d1ex0a1 b.1.18.9 (A:7-190) Transglutaminase N-terminal domain
{Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Length = 184
Score = 27.5 bits (61), Expect = 7.8
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 5/63 (7%)
Query: 206 HRSDYNSPSLI-----PFFITIFLSRASQSEWNLLCERLSTSECLVVVNAVRVLIQLVES 260
H Y + LI F++ I SR +L + + +V
Sbjct: 59 HTDKYENNKLIVRRGQSFYVQIDFSRPYDPRRDLFRVEYVIGRYPQENKGTYIPVPIVSE 118
Query: 261 RTH 263
Sbjct: 119 LQS 121
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}
Length = 193
Score = 27.4 bits (61), Expect = 8.6
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 975 LGDMTQIEEIIEKCKHLKQQIDNSSTDETKAK 1006
+ + + I + ++QQI+ +++D + K
Sbjct: 150 IDGVGEEAAIQGRVAQIRQQIEEATSDYDREK 181
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.376
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,299,102
Number of extensions: 200185
Number of successful extensions: 626
Number of sequences better than 10.0: 1
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 32
Length of query: 1232
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1136
Effective length of database: 1,089,516
Effective search space: 1237690176
Effective search space used: 1237690176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.4 bits)