Query psy4736
Match_columns 98
No_of_seqs 118 out of 843
Neff 7.2
Searched_HMMs 29240
Date Sat Aug 17 00:41:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4akg_A Glutathione S-transfera 99.9 1.9E-22 6.4E-27 177.9 5.7 90 7-98 2188-2278(2695)
2 3vkg_A Dynein heavy chain, cyt 99.8 3E-21 1E-25 171.7 7.5 89 7-98 2368-2459(3245)
3 3mq1_A Mite allergen DER P 5; 38.1 69 0.0024 19.7 4.8 79 2-97 23-101 (103)
4 2lm9_A BLO T 21 allergen; DUST 36.6 70 0.0024 19.4 4.4 79 2-97 17-95 (96)
5 2i2j_A Signaling peptide UA159 36.4 26 0.00089 15.9 1.9 14 69-82 3-16 (26)
6 2jmh_A BLO T 5, mite allergen 34.6 86 0.0029 19.7 5.3 79 2-97 38-116 (119)
7 3rj1_A Mediator of RNA polymer 32.6 30 0.001 22.3 2.4 75 2-84 4-78 (131)
8 1vcs_A Vesicle transport throu 29.0 66 0.0023 19.2 3.5 46 3-49 22-70 (102)
9 2qyw_A Vesicle transport throu 28.3 68 0.0023 19.2 3.5 47 3-50 32-82 (102)
10 3ld1_A Replicase polyprotein 1 24.2 42 0.0014 24.0 2.1 37 61-97 165-201 (359)
11 1jth_B Syntaxin 1A; coiled-coi 23.2 80 0.0027 17.7 2.9 29 20-48 4-32 (77)
12 1n7s_B Syntaxin 1A; neuronal s 21.5 94 0.0032 17.0 2.9 29 20-48 6-34 (68)
No 1
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.86 E-value=1.9e-22 Score=177.92 Aligned_cols=90 Identities=14% Similarity=0.201 Sum_probs=76.4
Q ss_pred chhhHhhhhhhHHhHHHHhhchHHHHHHHHHHhccchhhhhhhhHHHHHHHHhhccChhhhhcHHHHHHHHHHHh-hcCC
Q psy4736 7 GRFSRHRSTAGRLCVDTHTGGPSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSI-EGSE 85 (98)
Q Consensus 7 ~~~~~~k~~a~~~~I~~kl~ea~~~~~~I~~~r~~Y~~vA~~~s~lff~i~~L~~l~~~YqfSL~~Fi~lF~~~l-~~~~ 85 (98)
.+|+.+|.+|. +|++|++++++|+.+|+++|+.|+|+|.+||.|||++++|++|||||||||+||+++|..+| .+++
T Consensus 2188 ~~L~~sK~~a~--eI~~kl~~a~~t~~~I~~~R~~YrpvA~r~s~LyF~i~dL~~i~~mYq~SL~~F~~lF~~~i~~~s~ 2265 (2695)
T 4akg_A 2188 VTLNNLKKEAM--NIEKKLSESEEFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWFYGISIGQFLSCFKRVFIKKSR 2265 (2695)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCchhhCCHHHHHHHHHHHHHhhCc
Confidence 46888999999 59999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred CcccHHHHHhhcC
Q psy4736 86 KTDQLDKRLKILR 98 (98)
Q Consensus 86 ~~~~~~~Rl~~l~ 98 (98)
+..++++|+++|+
T Consensus 2266 ~~~~~~~R~~~l~ 2278 (2695)
T 4akg_A 2266 ETRAARTRVDEIL 2278 (2695)
T ss_dssp ------CHHHHHH
T ss_pred ccccHHHHHHHHH
Confidence 8889999998874
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.83 E-value=3e-21 Score=171.68 Aligned_cols=89 Identities=19% Similarity=0.400 Sum_probs=83.6
Q ss_pred chhhHhhhhhhHHhHHHHhhchHHHHHHHHHHhccchhhhhhhhHHHHHHHHhhccChhhhhcHHHHHHHHHHHhhcCCC
Q psy4736 7 GRFSRHRSTAGRLCVDTHTGGPSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEK 86 (98)
Q Consensus 7 ~~~~~~k~~a~~~~I~~kl~ea~~~~~~I~~~r~~Y~~vA~~~s~lff~i~~L~~l~~~YqfSL~~Fi~lF~~~l~~~~~ 86 (98)
.+|+.+|.+|. +|++|++++++++.+|+++|+.|+|+|.+||.|||++.+|++|| ||||||+||+++|..+|.++++
T Consensus 2368 ~~L~~sK~~s~--eI~~kl~~a~~te~~I~~~R~~YrpvA~r~s~LyF~i~dL~~i~-mYQfSL~~F~~lF~~si~~s~~ 2444 (3245)
T 3vkg_A 2368 STLETLKKETT--EIALKVEETETVMQEISEVSALYNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPN 2444 (3245)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTGGGGST-TCCCCHHHHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC-eeeCCHHHHHHHHHHHHHhCcc
Confidence 46888999988 59999999999999999999999999999999999999999999 9999999999999999998876
Q ss_pred c---ccHHHHHhhcC
Q psy4736 87 T---DQLDKRLKILR 98 (98)
Q Consensus 87 ~---~~~~~Rl~~l~ 98 (98)
. .++++|+++|+
T Consensus 2445 ~~~~~~~~~Rl~~l~ 2459 (3245)
T 3vkg_A 2445 LVDKKDPNERLVYLS 2459 (3245)
T ss_dssp GSSCCCHHHHHHHHH
T ss_pred ccccccHHHHHHHHH
Confidence 6 78999999874
No 3
>3mq1_A Mite allergen DER P 5; DUST mite; HET: MRD MPD; 2.80A {Dermatophagoides pteronyssinus}
Probab=38.12 E-value=69 Score=19.66 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=47.2
Q ss_pred cchhhchhhHhhhhhhHHhHHHHhhchHHHHHHHHHHhccchhhhhhhhHHHHHHHHhhccChhhhhcHHHHHHHHHHHh
Q psy4736 2 LSRQCGRFSRHRSTAGRLCVDTHTGGPSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSI 81 (98)
Q Consensus 2 ~~~~~~~~~~~k~~a~~~~I~~kl~ea~~~~~~I~~~r~~Y~~vA~~~s~lff~i~~L~~l~~~YqfSL~~Fi~lF~~~l 81 (98)
||.|.-.|..+|+|+.-+.| +.|..-...-|+..+..+....+|. -+|.+-+|.++.-...=.--+
T Consensus 23 Ls~Qi~~LEktKsKe~K~~I---lrEi~~~~~~i~Ga~~~lerElkRt-----------DLnilEkfNfE~al~t~~iL~ 88 (103)
T 3mq1_A 23 LQEQINHFEEKPTKEMKDKI---VAEMDTIIAMIDGVRGVLDRLMQRK-----------DLDIFEQYNLEMAKKSGDILE 88 (103)
T ss_dssp HHHHHHHHHHSCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTCS-----------SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcc-----------hhhHHHHhhHHHHHHHHHHHH
Confidence 67788888888988884444 4455555556666665555555542 377777777776544332222
Q ss_pred hcCCCcccHHHHHhhc
Q psy4736 82 EGSEKTDQLDKRLKIL 97 (98)
Q Consensus 82 ~~~~~~~~~~~Rl~~l 97 (98)
+ +-...++|++.+
T Consensus 89 K---DLk~~e~kVKai 101 (103)
T 3mq1_A 89 R---DLKKEEARVKKI 101 (103)
T ss_dssp H---HHHHHHHHHHTS
T ss_pred H---HHHHHHHHHhhc
Confidence 2 223456666654
No 4
>2lm9_A BLO T 21 allergen; DUST mite; NMR {Blomia tropicalis}
Probab=36.57 E-value=70 Score=19.40 Aligned_cols=79 Identities=10% Similarity=0.148 Sum_probs=46.5
Q ss_pred cchhhchhhHhhhhhhHHhHHHHhhchHHHHHHHHHHhccchhhhhhhhHHHHHHHHhhccChhhhhcHHHHHHHHHHHh
Q psy4736 2 LSRQCGRFSRHRSTAGRLCVDTHTGGPSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSI 81 (98)
Q Consensus 2 ~~~~~~~~~~~k~~a~~~~I~~kl~ea~~~~~~I~~~r~~Y~~vA~~~s~lff~i~~L~~l~~~YqfSL~~Fi~lF~~~l 81 (98)
||.|.-.|..+|+|+.-+.| +.|..-...-|+..+..+....+|. -+|.+-+|.++.-...=.--+
T Consensus 17 Ls~Qi~~LEktksK~~K~~I---lrEi~~~~~~i~ga~~~lerElkRt-----------DLnilEkfNfE~al~t~~iL~ 82 (96)
T 2lm9_A 17 ITHEVDDLEKTGNKDEKARL---LRELTVSEAFIEGSRGYFQRELKRT-----------DLDLLEKFNFEAALATGDLLL 82 (96)
T ss_dssp HHHHHHHHHHHCCSSHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSS-----------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhch-----------hhhHHHHhcHHHHHHHHHHHH
Confidence 67788888888988884444 4455555556666655555444442 377777777776544333222
Q ss_pred hcCCCcccHHHHHhhc
Q psy4736 82 EGSEKTDQLDKRLKIL 97 (98)
Q Consensus 82 ~~~~~~~~~~~Rl~~l 97 (98)
+ +-...++|++.+
T Consensus 83 k---DLk~~e~kVKai 95 (96)
T 2lm9_A 83 K---DLKALQKRVQDS 95 (96)
T ss_dssp H---HHHHHHHHHHHH
T ss_pred H---HHHHHHHHHhcc
Confidence 2 223455666654
No 5
>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic}
Probab=36.39 E-value=26 Score=15.86 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=10.3
Q ss_pred cHHHHHHHHHHHhh
Q psy4736 69 SLNWFINLYVQSIE 82 (98)
Q Consensus 69 SL~~Fi~lF~~~l~ 82 (98)
||..|.++|..+..
T Consensus 3 slstffrlfnrsft 16 (26)
T 2i2j_A 3 SLSTFFRLFNRSFT 16 (26)
T ss_pred cHHHHHHHHhHHHH
Confidence 57778888887664
No 6
>2jmh_A BLO T 5, mite allergen BLO T 5; DUST mites, group 5; NMR {Blomia tropicalis} PDB: 2jrk_A
Probab=34.63 E-value=86 Score=19.72 Aligned_cols=79 Identities=10% Similarity=0.085 Sum_probs=47.4
Q ss_pred cchhhchhhHhhhhhhHHhHHHHhhchHHHHHHHHHHhccchhhhhhhhHHHHHHHHhhccChhhhhcHHHHHHHHHHHh
Q psy4736 2 LSRQCGRFSRHRSTAGRLCVDTHTGGPSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSI 81 (98)
Q Consensus 2 ~~~~~~~~~~~k~~a~~~~I~~kl~ea~~~~~~I~~~r~~Y~~vA~~~s~lff~i~~L~~l~~~YqfSL~~Fi~lF~~~l 81 (98)
||.|.-.|..+|+|+.-+.| +.|..-...-|+.++..+....+|. -+|.+-+|.++.-+.+=.--+
T Consensus 38 Ls~Qi~~LE~tKsKe~K~~I---lrEi~~~~~~i~Ga~~~lerElkRt-----------DLnilEkfNfE~al~t~~iL~ 103 (119)
T 2jmh_A 38 LQHQLDELNENKSKELQEKI---IRELDVVCAMIEGAQGALERELKRT-----------DLNILERFNYEEAQTLSKILL 103 (119)
T ss_dssp HHHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTS-----------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcc-----------hhhHHHHhhHHHHHHHHHHHH
Confidence 67788888899998884444 4555555556666665555555542 377777777776544332222
Q ss_pred hcCCCcccHHHHHhhc
Q psy4736 82 EGSEKTDQLDKRLKIL 97 (98)
Q Consensus 82 ~~~~~~~~~~~Rl~~l 97 (98)
+ +-...++|++.+
T Consensus 104 K---DLk~~e~kVKai 116 (119)
T 2jmh_A 104 K---DLKETEQKVKDI 116 (119)
T ss_dssp H---HHHHHHHHHHHS
T ss_pred H---HHHHHHHHHHhh
Confidence 2 223456676654
No 7
>3rj1_A Mediator of RNA polymerase II transcription subun; RNA polymeras II, POL II, head module, head, regulator, helical bundle; 4.30A {Saccharomyces cerevisiae}
Probab=32.65 E-value=30 Score=22.26 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=42.6
Q ss_pred cchhhchhhHhhhhhhHHhHHHHhhchHHHHHHHHHHhccchhhhhhhhHHHHHHHHhhccChhhhhcHHHHHHHHHHHh
Q psy4736 2 LSRQCGRFSRHRSTAGRLCVDTHTGGPSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSI 81 (98)
Q Consensus 2 ~~~~~~~~~~~k~~a~~~~I~~kl~ea~~~~~~I~~~r~~Y~~vA~~~s~lff~i~~L~~l~~~YqfSL~~Fi~lF~~~l 81 (98)
|.|+..+.+.+.-+ +..-|+++++...++-.+| -.+=.++|.+++.+..++.-++-..=.+..-+.-|-..|
T Consensus 4 ~~~~~~~~~~~e~~-q~~~IqERL~sL~~ID~~i-------vsLL~~aS~~~~tls~~k~g~~~~K~qF~~~t~~fy~~L 75 (131)
T 3rj1_A 4 LNTKSETKQENEGS-QPPYIQERLKSLNDIETQL-------CSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERL 75 (131)
T ss_dssp ------------------CHHHHTTTTTTTTTTT-------HHHHSTTTHHHHHHHHSCCSTTTTHHHHHHHHHHHHGGG
T ss_pred hhhhhhhhccccCC-CchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhccccCCHhHHHHHHHHHHHHHHHH
Confidence 44444443333322 2235777877766554443 566788899999999998888777666677777777777
Q ss_pred hcC
Q psy4736 82 EGS 84 (98)
Q Consensus 82 ~~~ 84 (98)
...
T Consensus 76 ~~v 78 (131)
T 3rj1_A 76 DKS 78 (131)
T ss_dssp TTT
T ss_pred HHH
Confidence 653
No 8
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=28.99 E-value=66 Score=19.22 Aligned_cols=46 Identities=11% Similarity=0.090 Sum_probs=29.4
Q ss_pred chhhchhhH---hhhhhhHHhHHHHhhchHHHHHHHHHHhccchhhhhhh
Q psy4736 3 SRQCGRFSR---HRSTAGRLCVDTHTGGPSRTEKEIDDARMMYIPVSKHS 49 (98)
Q Consensus 3 ~~~~~~~~~---~k~~a~~~~I~~kl~ea~~~~~~I~~~r~~Y~~vA~~~ 49 (98)
.+.|+++.. ...++.-.+|+..++|++++..+.+.--..- |.+.+.
T Consensus 22 ~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~-p~~~R~ 70 (102)
T 1vcs_A 22 TSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREI-PPQSRG 70 (102)
T ss_dssp HHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CTTTHH
T ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHhHH
Confidence 344555543 2233334479999999999998887665544 656554
No 9
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=28.32 E-value=68 Score=19.18 Aligned_cols=47 Identities=11% Similarity=0.040 Sum_probs=29.6
Q ss_pred chhhchhhH----hhhhhhHHhHHHHhhchHHHHHHHHHHhccchhhhhhhh
Q psy4736 3 SRQCGRFSR----HRSTAGRLCVDTHTGGPSRTEKEIDDARMMYIPVSKHSS 50 (98)
Q Consensus 3 ~~~~~~~~~----~k~~a~~~~I~~kl~ea~~~~~~I~~~r~~Y~~vA~~~s 50 (98)
.+.|+++.. .+.++.-.+|+..++|++++..+.+..-..- |.+.+..
T Consensus 32 ~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~-p~s~R~~ 82 (102)
T 2qyw_A 32 QGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA-PLTFRNP 82 (102)
T ss_dssp HHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHH
T ss_pred HHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHH
Confidence 345665522 2333344479999999999998887665444 6565543
No 10
>3ld1_A Replicase polyprotein 1A; globular like, HOST cytoplasm, HOST membrane, membrane, META binding, protease, RNA-binding; 2.50A {Avian infectious bronchitis virus}
Probab=24.19 E-value=42 Score=23.97 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=31.2
Q ss_pred ccChhhhhcHHHHHHHHHHHhhcCCCcccHHHHHhhc
Q psy4736 61 NIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKIL 97 (98)
Q Consensus 61 ~l~~~YqfSL~~Fi~lF~~~l~~~~~~~~~~~Rl~~l 97 (98)
+++.++|.--+...++|++++..-+...++.+|+..|
T Consensus 165 ~ls~lfqivk~~~~rifqkalaife~v~~lpqri~al 201 (359)
T 3ld1_A 165 NMSALFQIFKQQIVRIFQAALAIFENVSELPQRIAAL 201 (359)
T ss_dssp GGHHHHTTCTTTHHHHHHHHHCSSSSCSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5777888888888999999998888888999998764
No 11
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=23.23 E-value=80 Score=17.69 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=24.3
Q ss_pred hHHHHhhchHHHHHHHHHHhccchhhhhh
Q psy4736 20 CVDTHTGGPSRTEKEIDDARMMYIPVSKH 48 (98)
Q Consensus 20 ~I~~kl~ea~~~~~~I~~~r~~Y~~vA~~ 48 (98)
+|+++-.+...++..|.+..+.|..+|..
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~l 32 (77)
T 1jth_B 4 EIETRHSEIIKLENSIRELHDMFMDMAML 32 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888999999888888888764
No 12
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=21.48 E-value=94 Score=16.96 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=24.3
Q ss_pred hHHHHhhchHHHHHHHHHHhccchhhhhh
Q psy4736 20 CVDTHTGGPSRTEKEIDDARMMYIPVSKH 48 (98)
Q Consensus 20 ~I~~kl~ea~~~~~~I~~~r~~Y~~vA~~ 48 (98)
+|.++-.+...++..|.+..+.|..+|..
T Consensus 6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~l 34 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELHDMFMDMAML 34 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888888888998888888888764
Done!