Query psy4736
Match_columns 98
No_of_seqs 118 out of 843
Neff 7.2
Searched_HMMs 13730
Date Sat Aug 17 00:41:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4736.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4736hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcsa1 a.47.2.1 (A:8-96) Vesi 46.4 12 0.00084 20.8 3.5 47 3-50 15-64 (89)
2 d1s35a1 a.7.1.1 (A:1063-1168) 15.9 79 0.0057 16.4 3.4 33 20-52 33-65 (106)
3 d2azeb1 e.63.1.2 (B:201-301) T 15.8 47 0.0034 18.6 2.3 12 7-18 1-12 (101)
4 d1geqa_ c.1.2.4 (A:) Trp synth 14.0 32 0.0023 22.4 1.3 22 59-80 86-107 (248)
5 d1ilea1 a.27.1.1 (A:642-821) I 12.4 1E+02 0.0074 18.1 3.4 34 27-60 42-75 (180)
6 d1wu9a1 a.245.1.1 (A:191-249) 11.9 84 0.0061 15.9 2.4 24 20-43 5-28 (59)
7 d1ofcx2 a.4.1.13 (X:851-978) S 11.8 48 0.0035 19.6 1.5 35 53-97 75-109 (128)
8 d1s2xa_ a.47.3.1 (A:) Cag-Z {H 11.7 54 0.0039 19.5 1.8 27 71-97 30-56 (180)
9 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 11.1 93 0.0068 17.9 2.9 29 20-48 163-191 (196)
10 d2hwna1 a.31.1.1 (A:5-43) cAMP 10.5 63 0.0046 15.0 1.5 15 63-77 22-36 (39)
No 1
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.38 E-value=12 Score=20.83 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=31.7
Q ss_pred chhhchhhH---hhhhhhHHhHHHHhhchHHHHHHHHHHhccchhhhhhhh
Q psy4736 3 SRQCGRFSR---HRSTAGRLCVDTHTGGPSRTEKEIDDARMMYIPVSKHSS 50 (98)
Q Consensus 3 ~~~~~~~~~---~k~~a~~~~I~~kl~ea~~~~~~I~~~r~~Y~~vA~~~s 50 (98)
.+.||+++. ...++.-.+|+..++++.++..+++.--..- |.+.+..
T Consensus 15 ~~kl~~i~~~~geerk~~l~~ie~~leEA~ell~qMelEvr~~-p~s~R~~ 64 (89)
T d1vcsa1 15 TSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREI-PPQSRGM 64 (89)
T ss_dssp HHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CTTTHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CHHHHHH
Confidence 345665554 3344444579999999999999988766554 6566544
No 2
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.89 E-value=79 Score=16.38 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=26.6
Q ss_pred hHHHHhhchHHHHHHHHHHhccchhhhhhhhHH
Q psy4736 20 CVDTHTGGPSRTEKEIDDARMMYIPVSKHSSVL 52 (98)
Q Consensus 20 ~I~~kl~ea~~~~~~I~~~r~~Y~~vA~~~s~l 52 (98)
+++..+..-+..+.+|+.....|..+...|..|
T Consensus 33 ~~~~~l~~h~~l~~ei~~~~~~~~~~~~~g~~L 65 (106)
T d1s35a1 33 EAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKV 65 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888888888888888888888887754
No 3
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.75 E-value=47 Score=18.64 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=7.8
Q ss_pred chhhHhhhhhhH
Q psy4736 7 GRFSRHRSTAGR 18 (98)
Q Consensus 7 ~~~~~~k~~a~~ 18 (98)
||++.+|.+-++
T Consensus 1 ~r~~~L~~El~~ 12 (101)
T d2azeb1 1 GRLEGLTQDLRQ 12 (101)
T ss_dssp CHHHHHHHHHHH
T ss_pred ChhHHHHHHHHH
Confidence 677777766553
No 4
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=14.00 E-value=32 Score=22.42 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=18.5
Q ss_pred hhccChhhhhcHHHHHHHHHHH
Q psy4736 59 LSNIDPMYQYSLNWFINLYVQS 80 (98)
Q Consensus 59 L~~l~~~YqfSL~~Fi~lF~~~ 80 (98)
|..+|++|+|.++.|++-+..+
T Consensus 86 m~Y~N~i~~~G~~~f~~~~~~~ 107 (248)
T d1geqa_ 86 MTYYNPIYRAGVRNFLAEAKAS 107 (248)
T ss_dssp EECHHHHHHHCHHHHHHHHHHH
T ss_pred EeccccccccCHHHHhhhhccc
Confidence 4578999999999999877765
No 5
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=12.41 E-value=1e+02 Score=18.09 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHhccchhhhhhhhHHHHHHHHhh
Q psy4736 27 GPSRTEKEIDDARMMYIPVSKHSSVLFFCCAELS 60 (98)
Q Consensus 27 ea~~~~~~I~~~r~~Y~~vA~~~s~lff~i~~L~ 60 (98)
+..++.+++.+.-+.|+---.......|+..+++
T Consensus 42 ~l~~~~~~v~~~~~~~~f~~a~~~l~~f~~~~l~ 75 (180)
T d1ilea1 42 RMQDLIQRVTEALEAYDPTTSARALRDFVVEDLS 75 (180)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHhHhhhh
Confidence 3455666666666666533333333345555544
No 6
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.95 E-value=84 Score=15.90 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=16.7
Q ss_pred hHHHHhhchHHHHHHHHHHhccch
Q psy4736 20 CVDTHTGGPSRTEKEIDDARMMYI 43 (98)
Q Consensus 20 ~I~~kl~ea~~~~~~I~~~r~~Y~ 43 (98)
+..+++.+.+.+...++.-|+.|-
T Consensus 5 ~L~~ei~elk~~v~~lEkERdFYF 28 (59)
T d1wu9a1 5 ELMQQVNVLKLTVEDLEKERDFYF 28 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777777777777664
No 7
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=11.81 E-value=48 Score=19.55 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=19.3
Q ss_pred HHHHHHhhccChhhhhcHHHHHHHHHHHhhcCCCcccHHHHHhhc
Q psy4736 53 FFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKIL 97 (98)
Q Consensus 53 ff~i~~L~~l~~~YqfSL~~Fi~lF~~~l~~~~~~~~~~~Rl~~l 97 (98)
|-.|..-..-+|++ -++||+. +-.+.++..|+.-|
T Consensus 75 ~e~ir~~Ir~~p~F--rFDwf~k--------SRt~~el~rR~~tL 109 (128)
T d1ofcx2 75 YEELRAAIRASPQF--RFDWFIK--------SRTALELQRRCNTL 109 (128)
T ss_dssp HHHHHHHHHHCGGG--TTCHHHH--------TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcch--hhhhHhc--------cCCHHHHHHHHHHH
Confidence 33344434556644 4456643 44566777887655
No 8
>d1s2xa_ a.47.3.1 (A:) Cag-Z {Helicobacter pylori [TaxId: 210]}
Probab=11.69 E-value=54 Score=19.54 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHhhc
Q psy4736 71 NWFINLYVQSIEGSEKTDQLDKRLKIL 97 (98)
Q Consensus 71 ~~Fi~lF~~~l~~~~~~~~~~~Rl~~l 97 (98)
..|++-+-.+++.+.++++.-.|+..|
T Consensus 30 dkfiqnyatslkdsndpqdflrrvqel 56 (180)
T d1s2xa_ 30 DKFIQNYATSLKDSNDPQDFLRRVQEL 56 (180)
T ss_dssp HHHHHHHTGGGGGCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 457777788888888888877776543
No 9
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.08 E-value=93 Score=17.87 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=20.8
Q ss_pred hHHHHhhchHHHHHHHHHHhccchhhhhh
Q psy4736 20 CVDTHTGGPSRTEKEIDDARMMYIPVSKH 48 (98)
Q Consensus 20 ~I~~kl~ea~~~~~~I~~~r~~Y~~vA~~ 48 (98)
.|.++-.+...++..|.+..+.|..+|..
T Consensus 163 ~i~eR~~eI~~Ie~sI~eL~~iF~dLa~L 191 (196)
T d1fioa_ 163 EVQARHQELLKLEKSMAELTQLFNDMEEL 191 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46677777777777777777777777653
No 10
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.48 E-value=63 Score=14.99 Aligned_cols=15 Identities=13% Similarity=0.514 Sum_probs=11.3
Q ss_pred ChhhhhcHHHHHHHH
Q psy4736 63 DPMYQYSLNWFINLY 77 (98)
Q Consensus 63 ~~~YqfSL~~Fi~lF 77 (98)
..+|+|+.++|-.+-
T Consensus 22 ~di~~faa~YF~~L~ 36 (39)
T d2hwna1 22 PDLVDFAVEYFTRLR 36 (39)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 447899999997653
Done!