RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4736
         (98 letters)



>d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 278

 Score = 24.5 bits (53), Expect = 2.5
 Identities = 12/62 (19%), Positives = 20/62 (32%)

Query: 9   FSRHRSTAGRLCVDTHTGGPSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQY 68
            SRH S  GR     H  G   T         +  P  +          E  +  P +++
Sbjct: 73  ASRHSSKDGRKIFTVHVSGNVGTADFGGKPYSLAKPSPQTMKNYVLALRERLDRKPEFEF 132

Query: 69  SL 70
           ++
Sbjct: 133 TM 134


>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
           [TaxId: 1396]}
          Length = 417

 Score = 23.7 bits (51), Expect = 5.9
 Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 23  THTGGPSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYS 69
           T   G  +     D + ++          + F C E+++     +YS
Sbjct: 299 TIPHGAEKPAGYNDYSHLLDA-FKSAKLDVTFTCLEMTDKGSYPEYS 344


>d2gfqa1 c.56.7.1 (A:1-274) Hypothetical protein PH0006
          {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 274

 Score = 23.3 bits (50), Expect = 7.3
 Identities = 7/19 (36%), Positives = 8/19 (42%)

Query: 9  FSRHRSTAGRLCVDTHTGG 27
           SRH S      + TH  G
Sbjct: 77 ASRHSSKQKLPALTTHVTG 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 344,084
Number of extensions: 12620
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 3
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.2 bits)