Query psy4738
Match_columns 1188
No_of_seqs 556 out of 5387
Neff 8.3
Searched_HMMs 29240
Date Sat Aug 17 00:45:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 2.2E-31 7.4E-36 319.5 36.7 375 8-426 25-434 (451)
2 3o7q_A L-fucose-proton symport 100.0 1.9E-29 6.6E-34 301.5 40.3 350 7-401 22-409 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 6.4E-30 2.2E-34 306.7 18.2 376 566-1156 50-434 (451)
4 4gc0_A D-xylose-proton symport 100.0 4.5E-27 1.5E-31 285.6 35.9 396 10-439 11-477 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.1E-28 3.7E-33 289.0 16.1 347 13-401 2-354 (375)
6 3o7q_A L-fucose-proton symport 100.0 1.8E-27 6.3E-32 284.3 23.5 350 567-1149 49-426 (438)
7 4gc0_A D-xylose-proton symport 100.0 3.7E-28 1.2E-32 295.2 16.4 157 576-738 52-232 (491)
8 4aps_A DI-OR tripeptide H+ sym 99.9 4.4E-26 1.5E-30 277.0 27.7 344 67-422 47-468 (491)
9 4aps_A DI-OR tripeptide H+ sym 99.9 2.6E-25 8.8E-30 270.2 25.5 151 570-724 45-198 (491)
10 2gfp_A EMRD, multidrug resista 99.9 1.5E-26 5E-31 270.9 11.9 213 567-846 23-235 (375)
11 2cfq_A Lactose permease; trans 99.9 1.2E-22 4.1E-27 241.7 18.8 340 67-424 36-398 (417)
12 2xut_A Proton/peptide symporte 99.9 1.3E-22 4.6E-27 248.5 17.2 145 70-218 50-199 (524)
13 2xut_A Proton/peptide symporte 99.9 7.5E-21 2.6E-25 232.9 23.9 144 576-722 51-198 (524)
14 2cfq_A Lactose permease; trans 99.8 2.4E-22 8.2E-27 239.1 5.5 149 570-722 34-187 (417)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.2e-31 Score=319.51 Aligned_cols=375 Identities=18% Similarity=0.186 Sum_probs=293.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHH
Q psy4738 8 QRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGY 87 (1188)
Q Consensus 8 ~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~ 87 (1188)
.++.....++++.+..++++..+++.+|.+. +|+ .|..+.+++.+++.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~-~s~~~~g~~~~~~~~~~ 75 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV----------------------------EQG-FSRGDLGFALSGISIAY 75 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT----------------------------SST-TCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHh-ccHhHHHHHHHHHHHHH
Confidence 4567788888999999999999999999998 678 99999999999999999
Q ss_pred HHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHH----hhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCch
Q psy4738 88 VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF----AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 163 (1188)
Q Consensus 88 ~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~----a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~R 163 (1188)
.++++++|+++||+|||+++..+.++++++++++++ + +|++.++++|+++|++.+...|+..+++.|++|+++|
T Consensus 76 ~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r 153 (451)
T 1pw4_A 76 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER 153 (451)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHH
T ss_pred HHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhh
Confidence 999999999999999999999999999999999999 8 8999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccCCC-CChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhH----------
Q psy4738 164 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQRE---------- 232 (1188)
Q Consensus 164 g~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~g-Wr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~---------- 232 (1188)
++++++...+..+|.+++|++++.+.+. .| ||++|++.++++++..++.++..||+|++++..++++
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAW--FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYN 231 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHH--TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccch
Confidence 9999999999999999999999998888 88 9999999999998888877777888766432111100
Q ss_pred -----HHH-----HHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 233 -----KEY-----LADTIGCLA-----RNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWF 297 (1188)
Q Consensus 233 -----~~~-----~~~~~~~~~-----~~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~l 297 (1188)
+.. ..+..+... ...+......+....++|.|+++.+|++..+.+...+...++..++.++.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 311 (451)
T 1pw4_A 232 EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 311 (451)
T ss_dssp -------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000011110 14445556677888999999999899999999999999999999999999999
Q ss_pred HHHH--hccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHH
Q psy4738 298 SDYL--VSKDIFSVTVIRKIFTTIASVGPASGVILASYAGC-DQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGT 373 (1188)
Q Consensus 298 sdr~--~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~ 373 (1188)
.||+ ++| +.......+...++++....... +.........+...+.+...+.......+..| +.||+
T Consensus 312 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 382 (451)
T 1pw4_A 312 SDKVFRGNR---------GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGT 382 (451)
T ss_dssp HHHTSTTCH---------HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHhcCCc---------hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhh
Confidence 9998 653 33333333333244444444332 33333333333333444444554555555555 78999
Q ss_pred HHHHHHHHHhh-hhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhhhh
Q psy4738 374 LMAIVNGIGAI-SGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLV 426 (1188)
Q Consensus 374 ~~g~~~~~~~l-gg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (1188)
+.|+.+...++ ++.++|.+.|.+.|..| +...+...+++.+++.+......
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999987 34455555555555555544443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=1.9e-29 Score=301.46 Aligned_cols=350 Identities=14% Similarity=0.129 Sum_probs=274.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHH
Q psy4738 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWG 86 (1188)
Q Consensus 7 ~~r~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg 86 (1188)
++++....+++++++...+++...++.+|.+. +++|+|..+.+++.+.+.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~g~s~~~~g~~~~~~~~~ 73 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQ----------------------------QAFTLTNFQAGLIQSAFYFG 73 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHSCCCSHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------------------------HHcCCCHHHHHHHHHHHHHH
Confidence 34566777788889999999999999999998 78999999999999999999
Q ss_pred HHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHH---HHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCch
Q psy4738 87 YVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLT---PFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 163 (1188)
Q Consensus 87 ~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~---a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~R 163 (1188)
+.++++++|+++||+|||+++..+.++++++++++ +++ ++++.+++.|+++|++.+...|...+++.|++|+|+|
T Consensus 74 ~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r 151 (438)
T 3o7q_A 74 YFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSG 151 (438)
T ss_dssp HHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTH
T ss_pred HHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhH
Confidence 99999999999999999999999999999999999 777 9999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh-hccCCC-------------------------CChhHHHHHHHHHHHHHHHhhh
Q psy4738 164 GKIGSFVFAGNQIGTVFSSFLSGFLL-KYTDGD-------------------------WPEIFYLFGILGVLWFVAWCFL 217 (1188)
Q Consensus 164 g~~~gi~~~~~~lG~~ig~~lgg~l~-~~~~~g-------------------------Wr~~F~i~g~i~li~~il~~~~ 217 (1188)
++++++.+.+..+|.+++|++++.+. +. .+ ||+.|++.+.+.++..+++++.
T Consensus 152 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 152 HFRLNLAQTFNSFGAIIAVVFGQSLILSN--VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHTS--SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 55 44 9999998888777766655443
Q ss_pred -cccCCCCCCC--CCHhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHH
Q psy4738 218 -CYNDPASHPY--ISQREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKY-MKSVMKFSIAKNGVLSSLPFLLMW 288 (1188)
Q Consensus 218 -~~~~p~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~y-l~~~~g~s~~~~g~l~~~~~l~~~ 288 (1188)
.||++++++. .+++.++...+.++.... ..++.....+....++|.| +++.+|++..+.+...+...++..
T Consensus 230 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 309 (438)
T 3o7q_A 230 KFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFF 309 (438)
T ss_dssp CCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHH
Confidence 3333332111 111112222222222111 4445555677788999999 899889999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc
Q psy4738 289 LTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP 368 (1188)
Q Consensus 289 ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 368 (1188)
++.++.++++||+++| ....++.+...++++.....+. ....... .+...+.+...+.......+..|
T Consensus 310 ~~~~~~g~l~~r~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~ 377 (438)
T 3o7q_A 310 IGRFTGTWLISRFAPH----------KVLAAYALIAMALCLISAFAGG-HVGLIAL-TLCSAFMSIQYPTIFSLGIKNLG 377 (438)
T ss_dssp HHHHHHHHHHHHSCHH----------HHHHHHHHHHHHHHHHHHHCCH-HHHHHHH-HHHHHHHTTHHHHHHHHHHSSCG
T ss_pred HHHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHHHHcCC-cHHHHHH-HHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999864 2333444444444444444433 2223333 33334455556666666555566
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCC
Q psy4738 369 NYAGTLMAIVNGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 369 ~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
++++.+.++.+ ...+++.++|.+.|.+.|..|
T Consensus 378 ~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 378 QDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp GGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 55888888877 788999999999999999988
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=6.4e-30 Score=306.66 Aligned_cols=376 Identities=15% Similarity=0.105 Sum_probs=275.3
Q ss_pred cccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhh----hcccchhHHHHHH
Q psy4738 566 PEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPM----AAYMGPVWLIVWR 641 (1188)
Q Consensus 566 a~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~----a~~~~~~~l~~~R 641 (1188)
..|.+.+|+ .++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++++ ++ +.+.++++|
T Consensus 50 ~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~ 126 (451)
T 1pw4_A 50 AMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS--SIAVMFVLL 126 (451)
T ss_dssp HHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS--SSSHHHHHH
T ss_pred HHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccc--cHHHHHHHH
Confidence 357788899 99999999999999999999999999999999999999999999999999999 88 566799999
Q ss_pred HHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy4738 642 FFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLF 721 (1188)
Q Consensus 642 ~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~ 721 (1188)
+++|++.+...|...+++.|++|+++|+++.++.+.+..+|.+++|.+++.+.+..+ +||+.|++.+++.++..++.++
T Consensus 127 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 127 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-DWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999876543 3999999999999888777777
Q ss_pred hccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCC
Q psy4738 722 IGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPT 801 (1188)
Q Consensus 722 ~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1188)
.+||+|++++..++++.+...+. +.++. +.+..+.++ .
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~-----~~~~~~~~~-------------------------~ 243 (451)
T 1pw4_A 206 MMRDTPQSCGLPPIEEYKNDYPD------------DYNEK-----AEQELTAKQ-------------------------I 243 (451)
T ss_dssp HCCCSSTTTCCCSCTTTCCC------------------------------CCTH-------------------------H
T ss_pred hccCCHhhcCCCChhhhcccccc------------cchhh-----hhccccccc-------------------------c
Confidence 77777665433222211100000 00000 000000110 0
Q ss_pred cccccccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhcccccccccchhHHHhhhccCcchhHHHHHHHHhhccc
Q psy4738 802 PWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFM 881 (1188)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1188)
.+++.++++.++...+..+....+.+++..++|.|+++..|+|+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------------------------------- 288 (451)
T 1pw4_A 244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD----------------------------------- 288 (451)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH-----------------------------------
T ss_pred hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-----------------------------------
Confidence 134567788888888888888888888999999999988888764
Q ss_pred ccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCCCCCCcchhHHHHhhhhhhcccCC
Q psy4738 882 GFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAPYSFNFPLFKYVLRKHADKYNRFQ 961 (1188)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1188)
T Consensus 289 -------------------------------------------------------------------------------- 288 (451)
T 1pw4_A 289 -------------------------------------------------------------------------------- 288 (451)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHHHHhhhchhhHHH--HhhccchhH
Q psy4738 962 DLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFI--VERQWFSMT 1039 (1188)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i~~~~~g~lsd~~--~~r~~~~~~ 1039 (1188)
+.+....+..++..++.++.|+++||+ ++|
T Consensus 289 ------------------------------------------~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~------ 320 (451)
T 1pw4_A 289 ------------------------------------------KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR------ 320 (451)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH------
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------
Confidence 234445666688889999999999997 433
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhccCC-chHHHHHHHHHHhhhhccccccccccccCC-CCcchhHHHHHhhhhhhh-hhh
Q psy4738 1040 LTRKIFATAASMGPAVGIILASYSGC-NKVLAVMFFAIGMGFMGFYYPSIRINSLDL-SPNYAATLMAIVNGLGAV-SGI 1116 (1188)
Q Consensus 1040 ~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-g~~ 1116 (1188)
+.......+...+++..+..... +.........+...+.+...+.......+. ++++||++.|+.+...++ |+.
T Consensus 321 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 397 (451)
T 1pw4_A 321 ---GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 397 (451)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence 23333333333255555444432 333332222222222333333333444454 456699999999999999 999
Q ss_pred hhhhhheeecCCCccchhHHHHHHHHHHHHHhhhhhheec
Q psy4738 1117 FSAPLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVFG 1156 (1188)
Q Consensus 1117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1156 (1188)
++|.+.|.+.+..+ |+..|++.+++.+++.++.+...
T Consensus 398 ~~~~~~g~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 398 AASAIVGYTVDFFG---WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHSSC---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988754 88888888887777776665543
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=4.5e-27 Score=285.61 Aligned_cols=396 Identities=14% Similarity=0.159 Sum_probs=269.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHH
Q psy4738 10 YILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVI 89 (1188)
Q Consensus 10 ~~i~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i 89 (1188)
+.+.++..++.++...|...++.++|.+.+....+ ...+.+.+..+.|++.++|++|+.+
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~g~~~s~~~~G~~i 70 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAP--------------------QNLSESAANSLLGFCVASALIGCII 70 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGG--------------------GCCCHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------------CCCCcccHHHHHHHHHHHHHHHHHH
Confidence 44555567788888999999999999887321100 0022344677889999999999999
Q ss_pred hHhhHHHhhcccCchHHHHHHHHHHHHHHHHHHH------------------hhhccHHHHHHHHHHHHhhhccchhHHH
Q psy4738 90 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF------------------AARQSANWLIALRFFEGLGEGTTFPALN 151 (1188)
Q Consensus 90 ~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~a~------------------a~~~s~~~lli~R~l~Glg~g~~~p~~~ 151 (1188)
+++++|+++||+|||+++..+.+++.++++++++ + +|+++++++|+++|++.|...+.+.
T Consensus 71 G~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a--~~~~~l~~~R~l~G~g~G~~~~~~~ 148 (491)
T 4gc0_A 71 GGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLA--GYVPEFVIYRIIGGIGVGLASMLSP 148 (491)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGG--GCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999994 5 8999999999999999999999999
Q ss_pred HHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc------CCCCChhHHHHHHHHHHHHHHHhhhcccCCCCC
Q psy4738 152 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT------DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH 225 (1188)
Q Consensus 152 ~li~~~~p~~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~------~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~ 225 (1188)
.+++|+.|+++|++..++.+.+..+|.++++.++..+.... ..+||+.+.+..+..++..+ ..+..||+|+..
T Consensus 149 ~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L 227 (491)
T 4gc0_A 149 MYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWL 227 (491)
T ss_dssp HHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHH
T ss_pred HHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHH
Confidence 99999999999999999999999999999999888876542 13577777666665555443 344556665310
Q ss_pred --CCCCHhHHHH----------------HHHHHhhhhh-------------------hHHHHHHHHHHHHHHHHHHHHHH
Q psy4738 226 --PYISQREKEY----------------LADTIGCLAR-------------------NKIGHDWGLFMISADLPKYMKSV 268 (1188)
Q Consensus 226 --~~~~~~~~~~----------------~~~~~~~~~~-------------------~~~~~~~~~~~~~~~lp~yl~~~ 268 (1188)
+...++.++. .++......+ ..+....+.+.+..+.|.+.++
T Consensus 228 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 306 (491)
T 4gc0_A 228 MSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT- 306 (491)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-
Confidence 0000000000 0000000000 1112222344555566655554
Q ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHH--h-hcchHHHHHHHH
Q psy4738 269 MKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILAS--Y-AGCDQILVVTLF 345 (1188)
Q Consensus 269 ~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~--~-~~~~~~~~~~~~ 345 (1188)
.+.+............+...++.++.+++.||+|||+. ...+.....++++.+. . ...+.......+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL----------QIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 376 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH----------HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch----------hccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 77888888888888899999999999999999997532 2222333333222222 1 122223222222
Q ss_pred HH-HHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCC----ccchHHHHHHHHHHHHHH
Q psy4738 346 TV-GMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILVPNNG----VLSSLPFLLMWLTAIVAG 419 (1188)
Q Consensus 346 ~~-~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G----~~~~~~~~~~~~~~~~~~ 419 (1188)
.+ ..++.....+....+..|+.| +.|++++|+.+..+++++++++.+.+.+.+... ......+++.++++++..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 22 222233334566667777776 789999999999999999999999888765421 223455666666666666
Q ss_pred HHH-hhhhhcccchhhhhhHh
Q psy4738 420 WFS-DYLVSKNIFSVTVIRKI 439 (1188)
Q Consensus 420 ~~~-~~~~~~~~~~~~~~~k~ 439 (1188)
++. .+.++.|.+..++..++
T Consensus 457 i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 457 LFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HHHHHHCCCCTTCCHHHHGGG
T ss_pred HHHHheecCCCCCCHHHHHHH
Confidence 654 45566666666666554
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=1.1e-28 Score=289.02 Aligned_cols=347 Identities=17% Similarity=0.185 Sum_probs=270.7
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHhhhcccCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHHhHh
Q psy4738 13 GFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNEFDWDEKTQGLILSAFYWGYVIMHI 92 (1188)
Q Consensus 13 ~~ll~l~~~~~~~~~~~~s~ai~~m~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~s~~~~g~l~s~~~lg~~i~~~ 92 (1188)
+.++++..+....+...+++.+|.+. +|+|+|+++.+++.+.+.+++.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~g~s~~~~g~~~~~~~~~~~~~~~ 53 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMA----------------------------RDLNVREGAVQSVMGAYLLTYGVSQL 53 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------TTSSSTTHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHH----------------------------HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888999999999999998 78999999999999999999999999
Q ss_pred hHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhccchhHHHHHHhhccCCCchhhHHHHHHH
Q psy4738 93 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA 172 (1188)
Q Consensus 93 ~~G~LaDr~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~~~p~~~~li~~~~p~~~Rg~~~gi~~~ 172 (1188)
++|+++||+|||+++..+.++.++++++++++ ++++.+++.|+++|++.+...|...+++.|++|+|||++++++...
T Consensus 54 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (375)
T 2gfp_A 54 FYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNM 131 (375)
T ss_dssp THHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHH
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCCCCCCCCHhH---HHHHH-HHHhhhhhhHH
Q psy4738 173 GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQRE---KEYLA-DTIGCLARNKI 248 (1188)
Q Consensus 173 ~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~~~~~~~~~~---~~~~~-~~~~~~~~~~~ 248 (1188)
+..+|..++|++++++.+. .|||+.|++.+++.++..+...+..||+|++++..++.. ++..+ +.........+
T Consensus 132 ~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTM--WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLI 209 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHH
Confidence 9999999999999999988 799999999998888777655566666554332211110 11111 11111111445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHH-HHHHHH
Q psy4738 249 GHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIAS-VGPASG 327 (1188)
Q Consensus 249 ~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~-~~~~~~ 327 (1188)
......+....+.|.|+++.+|++..+.+.......++..++.++.+++.||.++ +....... ...+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~----------~~~~~~~~~~~~~~~ 279 (375)
T 2gfp_A 210 GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST----------LMWQSVICCLLAGLL 279 (375)
T ss_dssp HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH----------HHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 5566777888899999999999999999999999999999999999999988764 11111111 111111
Q ss_pred HHHHHhh-cchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCchhhHHHHHHHHHHHhhhhhhhhHHHHhhccCCC
Q psy4738 328 VILASYA-GCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNG 401 (1188)
Q Consensus 328 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~lgg~i~p~l~g~l~~~~G 401 (1188)
++..... ..+.+.......+...+.+...+.......+..|++||++.|+.+...++|+.++|.+.|.+.+..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 280 MWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 1111111 1123333333344445555566666677777778999999999999999999999999999887654
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=1.8e-27 Score=284.26 Aligned_cols=350 Identities=15% Similarity=0.133 Sum_probs=255.6
Q ss_pred ccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHh---hhhcccchhHHHHHHHH
Q psy4738 567 EESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILT---PMAAYMGPVWLIVWRFF 643 (1188)
Q Consensus 567 ~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~---a~a~~~~~~~l~~~R~l 643 (1188)
.|.+++++|+++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++ ++++ +.+.++++|++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l 126 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM--NYTLFLVGLFI 126 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHHH
Confidence 577889999999999999999999999999999999999999999999999999999999 7778 67789999999
Q ss_pred HHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----------------------
Q psy4738 644 EGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNY----------------------- 700 (1188)
Q Consensus 644 ~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~g----------------------- 700 (1188)
+|++.+...|...+++.|++|+++|+++.++.+....+|.+++|.+++.+.......
T Consensus 127 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (438)
T 3o7q_A 127 IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVL 206 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999998333333
Q ss_pred -chHHHHHHHHHHHHHHHHHHhhccCCCCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhch
Q psy4738 701 -WPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATS 779 (1188)
Q Consensus 701 -Wr~~F~i~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1188)
||+.|++.+.+.++..+..++. +.||+++..++++++.. ..
T Consensus 207 ~w~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~---------------------------~~--------- 248 (438)
T 3o7q_A 207 SVQTPYMIIVAIVLLVALLIMLT--KFPALQSDNHSDAKQGS---------------------------FS--------- 248 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--CCCCCTTTCCCCSSTTS---------------------------HH---------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--cCCcccccccccccccc---------------------------hh---------
Confidence 9999998887777665554433 22333321111110000 00
Q ss_pred hhHHHHHHHHhhhhheeecCCCcccccccchhHHHHHHHHhhchhhHHHHhhcchHH-HHhhhhhcccccccccchhHHH
Q psy4738 780 WPVIALVITQVVLISLFYLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKY-FASVIHFSVHSATSMGPAVGII 858 (1188)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~s~~~~~~~~~~~~~~ 858 (1188)
..+++.++++.++...+..+......++...++|.| +++..|+|+.
T Consensus 249 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------ 295 (438)
T 3o7q_A 249 ---------------------ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG------------ 295 (438)
T ss_dssp ---------------------HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH------------
T ss_pred ---------------------hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchh------------
Confidence 012334566667777777777777788888899999 8888888864
Q ss_pred hhhccCcchhHHHHHHHHhhcccccccCcccccccCCChhhHHHHHHHHhcccccccccccccccccccccccccccCCC
Q psy4738 859 LASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYHWTNRAP 938 (1188)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1188)
T Consensus 296 -------------------------------------------------------------------------------- 295 (438)
T 3o7q_A 296 -------------------------------------------------------------------------------- 295 (438)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchhHHHHhhhhhhcccCCCCCCCchhhhcccchhhHHhhHhhcccchhhhhhcccchhhhccCccchhhHHHHHH
Q psy4738 939 YSFNFPLFKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASNGLLSALPFLFMWI 1018 (1188)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~i 1018 (1188)
+.+.......++..+
T Consensus 296 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 310 (438)
T 3o7q_A 296 -----------------------------------------------------------------FAANYLTGTMVCFFI 310 (438)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHH
Confidence 334445566688889
Q ss_pred HHhhhchhhHHHHhhccchhHHHHHHHHHhhhhhhHHHHHhhhccCCchHHHHHHHHHHhhhhccccccccccccCCCCc
Q psy4738 1019 FSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPN 1098 (1188)
Q Consensus 1019 ~~~~~g~lsd~~~~r~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1098 (1188)
+.++.++++||+++| .....+..+.++++......+ +......+..++ .+.+...+.......+..|+
T Consensus 311 ~~~~~g~l~~r~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 311 GRFTGTWLISRFAPH----------KVLAAYALIAMALCLISAFAG-GHVGLIALTLCS-AFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp HHHHHHHHHHHSCHH----------HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHH-HHHTTHHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHH-HHHHHHHHHHHHHHHhhccc
Confidence 999999999998443 344455555555555544433 333333333333 33333444444444455556
Q ss_pred chhHHHHHhhhhhhhhhhhhhhhheeecCCCccchhHHHHHHHHHHHHHhh
Q psy4738 1099 YAATLMAIVNGLGAVSGIFSAPLIGIMTPNSTMSEWRLVFWLTFIILAVTN 1149 (1188)
Q Consensus 1099 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1149 (1188)
+++.+.+..+ .+.+|+.++|.+.|.+.+..+ +++..|.+.....++..
T Consensus 379 ~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 379 DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG--NIPTAELIPALCFAVIF 426 (438)
T ss_dssp GHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT--SSGGGGHHHHHHHHHHH
T ss_pred cccchhhHHH-HHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHH
Confidence 6888888877 778999999999999887632 26666666554444433
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=3.7e-28 Score=295.22 Aligned_cols=157 Identities=19% Similarity=0.307 Sum_probs=138.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhh------------------hcccchhHH
Q psy4738 576 WDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPM------------------AAYMGPVWL 637 (1188)
Q Consensus 576 ~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~------------------a~~~~~~~l 637 (1188)
.++.+.+|+.++|.+|+.++++++|+++||+|||+++.++.+++.++++++++ ++ +.+++
T Consensus 52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~--~~~~l 129 (491)
T 4gc0_A 52 AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG--YVPEF 129 (491)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG--CHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh--hHHHH
Confidence 34567899999999999999999999999999999999999999999999984 55 66789
Q ss_pred HHHHHHHHhhcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC------CCchHHHHHHHHH
Q psy4738 638 IVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN------NYWPVVFYLFGAV 711 (1188)
Q Consensus 638 ~~~R~l~Gig~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g------~gWr~~F~i~~~~ 711 (1188)
+++|+++|+|.|+..+.++.+++|+.|+++|++..++.+.+...|..+++.++..+....+ .+||+.+.+..++
T Consensus 130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIP 209 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999988875432 2388888888888
Q ss_pred HHHHHHHHHhhccCCCCCCcccChhhh
Q psy4738 712 AILWFVVWLFIGYSEPGSNPFISQKEM 738 (1188)
Q Consensus 712 ~~~~~~~~~~~~~~~pe~~~~~~~~~~ 738 (1188)
.++..+..++. ||+|+|+..+++
T Consensus 210 ~~~~~~~~~~~----peSp~~L~~~~~ 232 (491)
T 4gc0_A 210 ALLFLMLLYTV----PESPRWLMSRGK 232 (491)
T ss_dssp HHHHHHHGGGS----CCCHHHHHHTTC
T ss_pred hhhhhhhhhcC----CCChHHHHHcCc
Confidence 87777766666 999998754433
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.94 E-value=4.4e-26 Score=277.01 Aligned_cols=344 Identities=14% Similarity=0.107 Sum_probs=246.4
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcc-cCchHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhhcc
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGT 145 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr-~Grk~vl~~~lll~~v~sll~a~a~~~s~~~lli~R~l~Glg~g~ 145 (1188)
+|+|+|..+.+++.+.+.+++.++++++|+++|| +|||+++..+.+++++++++++++ +|++.+++.|+++|++.+.
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~ 124 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALFGSIILIIIGTGF 124 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHh
Confidence 4599999999999999999999999999999999 899999999999999999999998 9999999999999999999
Q ss_pred chhHHHHHHhhccCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhcccCCC
Q psy4738 146 TFPALNTLLAQWVPPTE--RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 223 (1188)
Q Consensus 146 ~~p~~~~li~~~~p~~~--Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~~p~ 223 (1188)
..|...+++.|++|+++ |++++++++.+..+|..++|++++.+.+. .|||++|++.++..++..+++.+..++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 125 LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA--AGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 99999999999999999 77888889999999999999999999998 899999999887777666555544333211
Q ss_pred C----CC-CCCHhHHHHHHHH---------------------------------------------H-------hhhhh-
Q psy4738 224 S----HP-YISQREKEYLADT---------------------------------------------I-------GCLAR- 245 (1188)
Q Consensus 224 ~----~~-~~~~~~~~~~~~~---------------------------------------------~-------~~~~~- 245 (1188)
+ ++ ..++++++...+. . ....+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 1 11 1112221111110 0 00000
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHH
Q psy4738 246 --------NKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFT 317 (1188)
Q Consensus 246 --------~~~~~~~~~~~~~~~lp~yl~~~~g~s~~~~g~l~~~~~l~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~ 317 (1188)
..+.....+.....++|.|.++..+.+..+.+.......+...++.++.+++.||+++|+... ....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~-----~~~~ 357 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS-----PTKF 357 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc-----hHHH
Confidence 111112233445567888999888888778888888899999999999999999999875422 1122
Q ss_pred HHHHHHHHHHHHHHHhh--------cchHHHHHHHHHHHHHHHhhhhhHHHHhhcccCc-hhhHHHHHHHHHHHhhhhhh
Q psy4738 318 TIASVGPASGVILASYA--------GCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGII 388 (1188)
Q Consensus 318 ~i~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~lgg~i 388 (1188)
..+....+++++..... ..+.........+...+.+...+.......+..| +.||+++|+.+...++|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333333332221 1233333334444444445545555556666555 77999999999999999999
Q ss_pred hhHHHHhhccCCCccchHHHHHHHHHHHHHHHHH
Q psy4738 389 SPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFS 422 (1188)
Q Consensus 389 ~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~ 422 (1188)
+|.+.+.+.+.. ....+...+.+.++..+..
T Consensus 438 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 438 NAQLVTLYNAKS---EVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHGGGGGGSS---TTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHhccc---HHHHHHHHHHHHHHHHHHH
Confidence 999999987753 2233444444444444443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=2.6e-25 Score=270.21 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=137.4
Q ss_pred cccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhh-hCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhc
Q psy4738 570 QQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQK-FGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGE 648 (1188)
Q Consensus 570 i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr-~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~ 648 (1188)
.++|+|.+.++.+++.+.+.+++.+++++.|+++|| +|||+++..+.++++++.+++++++ +.++++++|+++|++.
T Consensus 45 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~ 122 (491)
T 4aps_A 45 STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPF--GASALFGSIILIIIGT 122 (491)
T ss_dssp HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCC--STTHHHHHHHHHHHHH
T ss_pred chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHH
Confidence 346699999999999999999999999999999999 8999999999999999999999998 5677999999999999
Q ss_pred ccchhHHHHHHHhccCCCc--chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q psy4738 649 GTTFPAANQLLAAWIPKTE--RGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY 724 (1188)
Q Consensus 649 g~~~p~~~~~i~~~~~~~~--rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~ 724 (1188)
+...|...++++|++|+++ |++..++++.+..+|..++|.+++.+.+..+ ||+.|++.++..++..+...+..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 123 GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG--YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999998 7788898999999999999999999999888 999999988877666555544433
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.93 E-value=1.5e-26 Score=270.87 Aligned_cols=213 Identities=14% Similarity=0.174 Sum_probs=177.8
Q ss_pred ccccccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHh
Q psy4738 567 EESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGL 646 (1188)
Q Consensus 567 ~~~i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gi 646 (1188)
.|.+.+|+|.++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++++++ +.+.+++.|+++|+
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~g~ 100 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--SLTVLIAASAMQGM 100 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999999999999999999998 66779999999999
Q ss_pred hcccchhHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhhccCC
Q psy4738 647 GEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSE 726 (1188)
Q Consensus 647 g~g~~~p~~~~~i~~~~~~~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~~~~~ 726 (1188)
+.+...|...+++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.|++.+++.++..+...+.+||+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN--WRACYLFLLVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH--HHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 9999999999999999999999999999999999999999999999998777 99999999988877766444555444
Q ss_pred CCCCcccChhhhHHHHHHHhhhhhhhHHhhhhhccccccccCCCCchhhhhchhhHHHHHHHHhhhhheeecCCCccccc
Q psy4738 727 PGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEM 806 (1188)
Q Consensus 727 pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1188)
|++++ ++ + ...+ .+++.
T Consensus 179 ~~~~~---~~--~----------------------------~~~~------------------------------~~~~~ 195 (375)
T 2gfp_A 179 RPVDA---PR--T----------------------------RLLT------------------------------SYKTL 195 (375)
T ss_dssp STTTC---CC--C----------------------------CTTT------------------------------CSTHH
T ss_pred CCCCc---cc--c----------------------------cHHH------------------------------HHHHH
Confidence 32211 00 0 0001 12334
Q ss_pred ccchhHHHHHHHHhhchhhHHHHhhcchHHHHhhhhhccc
Q psy4738 807 ATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVH 846 (1188)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~ 846 (1188)
+++|+++...+..+....+.+....+.|.|+++..|+|+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (375)
T 2gfp_A 196 FGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSM 235 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 4556666666666777777888888999999998888864
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=1.2e-22 Score=241.72 Aligned_cols=340 Identities=14% Similarity=0.092 Sum_probs=215.7
Q ss_pred CcccCChhhHHHHHHHHHHHHHHhHhhHHHhhcccCchHHHHHHHHHHHHHHHHH---HHhhhccH-HHHHHHHHHHHhh
Q psy4738 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLT---PFAARQSA-NWLIALRFFEGLG 142 (1188)
Q Consensus 67 ~~~~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~Grk~vl~~~lll~~v~sll~---a~a~~~s~-~~lli~R~l~Glg 142 (1188)
+++|+|+.+.|++.+.+.+++.++++++|+++||+|||+++..+..++++++... .++ +.. ..++..|.+.|++
T Consensus 36 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--PLLQYNILVGSIVGGIY 113 (417)
T ss_dssp TTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH--HHHHTTCCHHHHGGGSS
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999888776543211 222 211 1244567777766
Q ss_pred hccchhHHHHHHhhccCC--CchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhccc
Q psy4738 143 EGTTFPALNTLLAQWVPP--TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 220 (1188)
Q Consensus 143 ~g~~~p~~~~li~~~~p~--~~Rg~~~gi~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~~~ 220 (1188)
.+..++.....+.++.++ ++|+...+.......+|.+++|++++++.+. +||+.|++.++.+++..+.+++..||
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~ 190 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFAKTD 190 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH---CSHHHHTTTTTTTTTHHHHSCSSCCC
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHHHHHcCcc
Confidence 666555555566666543 4567777888888899999999999999875 79999998877765555544444444
Q ss_pred CCCCC---C--CCC--HhHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHH
Q psy4738 221 DPASH---P--YIS--QREKEYLADTIGCLAR-----NKIGHDWGLFMISADLPKYMKSVMKF---SIAKNGVLSSLPFL 285 (1188)
Q Consensus 221 ~p~~~---~--~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~yl~~~~g~---s~~~~g~l~~~~~l 285 (1188)
+|++. + ..+ +.+.+...+.++.... ..+.....++....++|.|+++.++. +....+...+...+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 270 (417)
T 2cfq_A 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL 270 (417)
T ss_dssp CSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHH
T ss_pred cccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 32211 0 000 0001111111111111 11222233445556789998776543 24456777888888
Q ss_pred HHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Q psy4738 286 LMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALD 365 (1188)
Q Consensus 286 ~~~ig~~~~g~lsdr~~~r~~l~~~~~r~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1188)
+..++.++.++++||+++|+ ....+....++.++......+..... +...+.....+...+.......|
T Consensus 271 ~~~~~~~~~g~l~dr~g~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 339 (417)
T 2cfq_A 271 LNASIMFFAPLIINRIGGKN----------ALLLAGTIMSVRIIGSSFATSALEVV-ILKTLHMFEVPFLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHHHHHHHHHHHCHHH----------HHHHHHHHHHHHHHHHTTCCSHHHHH-HHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHH----------HHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998642 23334444444444444333322222 22222222233333334445555
Q ss_pred cCc-hhhHHHHHH-HHHHHhhhhhhhhHHHHhhccCCCccchHHHHHHHHHHHHHHHHHhh
Q psy4738 366 LSP-NYAGTLMAI-VNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDY 424 (1188)
Q Consensus 366 ~~p-~~~g~~~g~-~~~~~~lgg~i~p~l~g~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 424 (1188)
..| +.||++.+. .+....+|+.++|.+.|.+.|..| ....+...+++.+++.+....
T Consensus 340 ~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHh
Confidence 554 789999999 488899999999999999998766 344455555555555554433
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.88 E-value=1.3e-22 Score=248.45 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=133.7
Q ss_pred cCChhhHHHHHHHHHHHHHHhHhhHHHhhccc-CchHHHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHhhhccch
Q psy4738 70 DWDEKTQGLILSAFYWGYVIMHIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQ-SANWLIALRFFEGLGEGTTF 147 (1188)
Q Consensus 70 ~~s~~~~g~l~s~~~lg~~i~~~~~G~LaDr~-Grk~vl~~~lll~~v~sll~a~a~~~-s~~~lli~R~l~Glg~g~~~ 147 (1188)
++|..+.+++.+.+.+++.++++++|+++||+ |||+++..+.++++++.++++++ + +++.+++.|+++|++.+...
T Consensus 50 ~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~ 127 (524)
T 2xut_A 50 ELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--EHSVQGFYTGLFLIALGSGGIK 127 (524)
T ss_dssp STTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHTTH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhccccc
Confidence 39999999999999999999999999999999 99999999999999999999998 8 99999999999999999999
Q ss_pred hHHHHHHhhccCCCchhhHHHH---HHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHHHHHHhhhc
Q psy4738 148 PALNTLLAQWVPPTERGKIGSF---VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC 218 (1188)
Q Consensus 148 p~~~~li~~~~p~~~Rg~~~gi---~~~~~~lG~~ig~~lgg~l~~~~~~gWr~~F~i~g~i~li~~il~~~~~ 218 (1188)
|...+++.|++|+++|+++.+. ...+..+|.+++|++++.+.+. .|||++|++.+++.++..+.+++..
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~ 199 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN--FGAAVAFGIPGVLMFVATVFFWLGR 199 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT--SCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999877666 8999999999999999999988 8999999999888776665554433
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.86 E-value=7.5e-21 Score=232.92 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=130.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhhhh-CChhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhcccchhH
Q psy4738 576 WDETTQGLILGSFYWGYVIMHIPGGLLAQKF-GGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPA 654 (1188)
Q Consensus 576 ~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~-Grr~~l~~~~~~~~i~~ll~a~a~~~~~~~l~~~R~l~Gig~g~~~p~ 654 (1188)
.++.+.+++.+.+.+++.+++++.|+++||+ |||+++..+.++++++.+++++++ .+.+.+++.|+++|++.+...|.
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~ 129 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-HSVQGFYTGLFLIALGSGGIKPL 129 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhccccchh
Confidence 9999999999999999999999999999999 999999999999999999999887 13466999999999999999999
Q ss_pred HHHHHHhccCCCcchhHHHH---HHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 655 ANQLLAAWIPKTERGKVGAF---VWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 655 ~~~~i~~~~~~~~rg~~~g~---~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
..+++.|++|+++|+++.+. ++....+|.++||.+++.+.+..+ ||+.|++.+++.++..+...+.
T Consensus 130 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 130 VSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG--AAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC--HHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887766 889999999999999999998877 9999999988877665555443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=2.4e-22 Score=239.10 Aligned_cols=149 Identities=18% Similarity=0.212 Sum_probs=110.7
Q ss_pred cccccCcchhhhhHHHHHHHHHHHHHHhhhhhhhhhhCChhHHHHHHHHHHHHHH---HhhhhcccchhHHHHHHHHHHh
Q psy4738 570 QQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTI---LTPMAAYMGPVWLIVWRFFEGL 646 (1188)
Q Consensus 570 i~~~~~~s~~~~~~i~s~~~l~~~~~~~~~G~L~Dr~Grr~~l~~~~~~~~i~~l---l~a~a~~~~~~~l~~~R~l~Gi 646 (1188)
+++++|.|+.+.+++.+.+.+++.++++++|+++||+||||++..+..++++... .+++++... ..++..|++.|+
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 112 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ-YNILVGSIVGGI 112 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH-TTCCHHHHGGGS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5677999999999999999999999999999999999999999999888766432 123332110 124556777777
Q ss_pred hcccchhHHHHHHHhccCC--CcchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHhh
Q psy4738 647 GEGTTFPAANQLLAAWIPK--TERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722 (1188)
Q Consensus 647 g~g~~~p~~~~~i~~~~~~--~~rg~~~g~~~~~~~~G~~~g~~l~g~l~~~~g~gWr~~F~i~~~~~~~~~~~~~~~ 722 (1188)
+.+..++.....+.++.++ ++|++..|.......+|.+++|.+++.+.+. + ||+.|++.+++.++..+..++.
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~--~~~~f~~~~~~~~~~~~~~~~~ 187 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N--NQFVFWLGSGCALILAVLLFFA 187 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C--SHHHHTTTTTTTTTHHHHSCSS
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c--hhHHHHHHHHHHHHHHHHHHHc
Confidence 6666665555556565543 4567778888888889999999999999873 5 9999998877755544444333
Done!