RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4738
(1188 letters)
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 253 bits (648), Expect = 5e-74
Identities = 124/413 (30%), Positives = 201/413 (48%), Gaps = 31/413 (7%)
Query: 7 SQRYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCP-GDLDSRNHTNP 65
S R L F+ + A R CLSL + MV K + ++
Sbjct: 15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVN-------KENSTDLACLSAENELDNIK 67
Query: 66 DNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA 125
+ F W QGLILS+ ++G +I+ IP G LA K+ K ++G G+ +++ +++ P+AA
Sbjct: 68 NPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA 127
Query: 126 RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 185
++ R +GL +G+ PA + ++ +W PP ER ++ +G Q+GT +S
Sbjct: 128 GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPIS 187
Query: 186 GFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTI---GC 242
G+L + G WP IFY+FGI+G W + W +DP+ HP IS+ EK+Y+ ++
Sbjct: 188 GWLCES-WGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKG 246
Query: 243 LARNKI-------------------GHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLP 283
R + GH W ++ LP ++ V++ S +NG+LSSLP
Sbjct: 247 STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLP 306
Query: 284 FLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVT 343
+L WL +I AG+ +D+L S S+T RKIF I +GP Y L +
Sbjct: 307 YLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTII 366
Query: 344 LFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGIL 396
+ T+ A + +N+LDL+P + G + I G I G+I+ L G +
Sbjct: 367 ILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNI 419
Score = 159 bits (404), Expect = 1e-41
Identities = 81/390 (20%), Positives = 139/390 (35%), Gaps = 89/390 (22%)
Query: 567 EESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILT 626
+ + F W QGLIL S ++G +I+ IP G LA K+ K ++G G+ +++ +I+
Sbjct: 64 DNIKNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVI 123
Query: 627 PMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVIS 686
P AA G ++ R +GL +G+ PA ++++ W P ER ++ +G +GT I
Sbjct: 124 PWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIF 183
Query: 687 SSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIG 746
++G L + WP++FY+FG V W ++W +P +P IS+ E Y+ ++
Sbjct: 184 LPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSL- 241
Query: 747 SLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEM 806
T P K +
Sbjct: 242 ------------------QGQKGSTRQ--------------------------SLPIKAI 257
Query: 807 ATSWPVIALVITQVGHDWGLFTIAADLPKYFASVIHFSV--------------------- 845
S PV A+ GH W + LP + + V+ S
Sbjct: 258 PKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFA 317
Query: 846 ----------------------HSATSMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGF 883
+ +GP + Y L ++ +
Sbjct: 318 GYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSG 377
Query: 884 YYPSIRINSLDLSPNYAATLMAIVNGVQIF 913
+ INSLDL+P + + I
Sbjct: 378 PLAGVLINSLDLAPRFLGFIKGITGLPGFI 407
Score = 142 bits (361), Expect = 4e-36
Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 8/211 (3%)
Query: 964 PPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFAS--------NGLLSALPFLF 1015
P K + S PV A+ GH W + LP + + NGLLS+LP+LF
Sbjct: 250 QSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF 309
Query: 1016 MWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGCNKVLAVMFFA 1075
W+ S AG L+DF+ + S+T RKIF +GP + Y L ++
Sbjct: 310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILT 369
Query: 1076 IGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIMTPNSTMSEWR 1135
+ + INSLDL+P + + I G + G+ ++ L G + + + W
Sbjct: 370 LANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWL 429
Query: 1136 LVFWLTFIILAVTNLFYLVFGSAEIQPWNDP 1166
+VF + + + +FYL+FGSAE Q W
Sbjct: 430 IVFLIMAFVNILCVIFYLIFGSAERQDWAKE 460
Score = 124 bits (312), Expect = 1e-29
Identities = 52/162 (32%), Positives = 81/162 (50%)
Query: 400 NGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAG 459
NG+LSSLP+L WL +I AG+ +D+L S S+T RKIF I +GP Y
Sbjct: 299 NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS 358
Query: 460 CDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGI 519
L + + T+ A + +N+LDL+P + G + I G I G+I+ L G
Sbjct: 359 AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGN 418
Query: 520 LVPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEP 561
++ + W +VF I V ++ + Y+ GS + Q W +
Sbjct: 419 ILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAERQDWAKE 460
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 129 bits (326), Expect = 5e-32
Identities = 91/380 (23%), Positives = 149/380 (39%), Gaps = 39/380 (10%)
Query: 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ 127
+ G + SAF WGYV+ PGG L +FG + TL I+ +FT L FA
Sbjct: 23 DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY 82
Query: 128 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF 187
+ L LR G E FP + ++A W P +ER S + +G + L G+
Sbjct: 83 VS--LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGW 140
Query: 188 LLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARNK 247
+L W F + G+LG++W V W DP E++Y+ +G L +
Sbjct: 141 IL--IHFSWQWAFIIEGVLGIIWGVLW-LKFIPDPPQKAKWLTEEEKYI--VVGGLLAEQ 195
Query: 248 IGHD------------------WGLF-----------MISADLPKYMKSVMKFSIAKNGV 278
G WGL P Y+ SI + G
Sbjct: 196 QGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGF 255
Query: 279 LSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQ 338
++SLP ++ ++ I+ G SD L+ + V + IA + + + +Y
Sbjct: 256 MASLPGIVGFIGMILGGRLSDLLLRR--GKSLVFARKTAIIAGLVLSLLMFATNYVN-IP 312
Query: 339 ILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVP 398
+ L +G +G + + + N AG ++N +G + GI+ P +IG +
Sbjct: 313 YAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA 372
Query: 399 NNGVLSSLPFLLMWLTAIVA 418
G + ++ L I A
Sbjct: 373 TTGSFAGALMVVAALALIGA 392
Score = 92.8 bits (231), Expect = 9e-20
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
Query: 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA 630
Q + G + +F WGYV+ PGG L +FG + TL I+ +FT L A
Sbjct: 21 QEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGL--QAF 78
Query: 631 YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
V L + R G E FP ++A+W P +ER + + +G +I L
Sbjct: 79 AGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLV 138
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYL 741
G + L + W F + G + I+W V+WL +P +E Y+
Sbjct: 139 GWI--LIHFSWQWAFIIEGVLGIIWGVLWLK-FIPDPPQKAKWLTEEEKYI 186
Score = 45.8 bits (109), Expect = 1e-04
Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 3/149 (2%)
Query: 1006 GLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGC 1065
G +++LP + +I G LSD ++ R S+ RK A A + ++ + +Y
Sbjct: 254 GFMASLPGIVGFIGMILGGRLSDLLLRRGK-SLVFARK-TAIIAGLVLSLLMFATNYVN- 310
Query: 1066 NKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIM 1125
A+ A+G +G + S + N A ++N LG + GI +IG +
Sbjct: 311 IPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAI 370
Query: 1126 TPNSTMSEWRLVFWLTFIILAVTNLFYLV 1154
+ L+ ++ + LV
Sbjct: 371 AATTGSFAGALMVVAALALIGALSYLLLV 399
Score = 41.6 bits (98), Expect = 0.002
Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 3/140 (2%)
Query: 401 GVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGC 460
G ++SLP ++ ++ I+ G SD L+ + V + IA + + + +Y
Sbjct: 254 GFMASLPGIVGFIGMILGGRLSDLLLRR--GKSLVFARKTAIIAGLVLSLLMFATNYVN- 310
Query: 461 DQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGIL 520
+ L +G +G + + + N AG ++N +G + GI+ P +IG +
Sbjct: 311 IPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAI 370
Query: 521 VPNSTMLEWRLVFWISFGVI 540
+ L+ + +I
Sbjct: 371 AATTGSFAGALMVVAALALI 390
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 121 bits (306), Expect = 9e-30
Identities = 98/356 (27%), Positives = 152/356 (42%), Gaps = 34/356 (9%)
Query: 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR 126
+ GLI+SAF GY + + G L+ +FG + L G+L A+ +LL FA
Sbjct: 27 EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-- 84
Query: 127 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSG 186
S L+ RF GLG G +PA L+A+W PP ERG+ AG +G + L G
Sbjct: 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG 144
Query: 187 FLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARN 246
L + W +F + ILG+L + FL L +
Sbjct: 145 LLAES--LGWRWLFLILAILGLLLALLLLFL------------------LRLLLLLALAF 184
Query: 247 KIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDI 306
+G + + LP Y++ V+ S A+ G+L SL L L A++ G SD L
Sbjct: 185 -FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR--- 240
Query: 307 FSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDL 366
R++ I + A G++L + A +L+V L +G F L + +
Sbjct: 241 ------RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA 294
Query: 367 SPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFS 422
P GT + N G++ G + P L G+L+ G FL++ A++A
Sbjct: 295 PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY--GGVFLILAALALLAALLL 348
Score = 81.2 bits (201), Expect = 4e-16
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 4/152 (2%)
Query: 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA 630
+ + GLI+ +F GY + + G L+ +FG + L G+L A+ ++L A+
Sbjct: 26 AEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS 85
Query: 631 YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
L+V RF GLG G +PAA L+A W P ERG+ AG +G ++ L
Sbjct: 86 --SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLG 143
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722
GLL + W +F + + +L ++ LF+
Sbjct: 144 GLLAESLG--WRWLFLILAILGLLLALLLLFL 173
Score = 58.5 bits (142), Expect = 7e-09
Identities = 72/332 (21%), Positives = 130/332 (39%), Gaps = 27/332 (8%)
Query: 401 GVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGC 460
G++ S L L +++AG+ SD R+ + + A G +L ++A
Sbjct: 37 GLIVSAFSLGYALGSLLAGYLSD----------RFGRRRVLLLGLLLFALGSLLLAFASS 86
Query: 461 DQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGIL 520
+L+V F +G+ + + + A P G + + + + ++ P L G+L
Sbjct: 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL 146
Query: 521 VPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSW------NEPRHLLPEESQQY-- 572
L WR +F I + ++ + +F+ + + + L Y
Sbjct: 147 A---ESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQ 203
Query: 573 -EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGK-HTLGFGILSTAIFTILTPMAA 630
GL+L F G ++ + GGLL+ + G + L G+L A+ +L +A
Sbjct: 204 EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLL--LAL 261
Query: 631 YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
L+V G G G FPA L + P RG +G + L
Sbjct: 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722
GLL L + VF + A+A+L ++ L +
Sbjct: 322 GLL--LDTGGYGGVFLILAALALLAALLLLLL 351
Score = 50.0 bits (120), Expect = 4e-06
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 5/152 (3%)
Query: 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGK-HTLGFGILSTAIFTLLTPFAA 125
GL+LS F G ++ + GGLL+ + G + L G+L A+ LL A
Sbjct: 204 EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP 263
Query: 126 RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 185
S L+ G G G FPAL TL ++ PP RG +G L+
Sbjct: 264 --SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321
Query: 186 GFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 217
G L G + +F + L +L + L
Sbjct: 322 GLL--LDTGGYGGVFLILAALALLAALLLLLL 351
Score = 43.1 bits (102), Expect = 6e-04
Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 20/189 (10%)
Query: 975 WPVIALVITQVGHDWGLFTIAADLPKYF--------ASNGLLSALPFLFMWIFSQGAGCL 1026
++ L + +G + + LP Y A GLL +L L + + G L
Sbjct: 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLL 234
Query: 1027 SDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYP 1086
SD + R ++ + A+G++L + + +L V +G G +
Sbjct: 235 SDRLGRR---------RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPA 285
Query: 1087 SIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIMTPNSTMSEWRLVFWLTFIILA 1146
+ + S P T + N G++ G L G++ + VF + +
Sbjct: 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG---YGGVFLILAALAL 342
Query: 1147 VTNLFYLVF 1155
+ L L+
Sbjct: 343 LAALLLLLL 351
Score = 37.3 bits (87), Expect = 0.040
Identities = 47/299 (15%), Positives = 106/299 (35%), Gaps = 43/299 (14%)
Query: 252 WGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTV 311
++S LP + + S ++ G++ S L L +++AG+ SD
Sbjct: 13 LDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSD----------RF 61
Query: 312 IRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYA 371
R+ + + A G +L ++A +L+V F +G+ + + + A P
Sbjct: 62 GRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKER 121
Query: 372 GTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIF 431
G + + + + ++ P L G+L + G FL++ + ++
Sbjct: 122 GRALGLFSAGFGLGALLGPLLGGLLAESLGW--RWLFLILAILGLLLALL---------- 169
Query: 432 SVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLS 491
+ + ++ +A L L + G + + P L LS
Sbjct: 170 -LLFLLRLLLLLA-------------------LAFFLLSFGYYGLLTYLPLYLQEVLGLS 209
Query: 492 PNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVFM 550
AG L+++ G + ++ L L +L L+ +++ + +
Sbjct: 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALL 268
Score = 31.9 bits (73), Expect = 1.8
Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 13/150 (8%)
Query: 1006 GLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGC 1065
GL+ + L + S AG LSD R+ + A+G +L +++
Sbjct: 37 GLIVSAFSLGYALGSLLAGYLSDRF----------GRRRVLLLGLLLFALGSLLLAFASS 86
Query: 1066 NKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIM 1125
+L V F +G+G Y + + + P + + + + + L G++
Sbjct: 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL 146
Query: 1126 TPNSTMSEWRLVFWLTFIILAVTNLFYLVF 1155
WR +F + I+ + L L
Sbjct: 147 A---ESLGWRWLFLILAILGLLLALLLLFL 173
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 114 bits (287), Expect = 2e-27
Identities = 88/334 (26%), Positives = 129/334 (38%), Gaps = 22/334 (6%)
Query: 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR 126
+ GL+L+AF GY + G L+ +FG + L G+L A+ LL FA+
Sbjct: 25 EDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS- 83
Query: 127 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSG 186
S L+ LR +GLG G FPA L+A W PP ERG+ + AG +G L G
Sbjct: 84 -SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG 142
Query: 187 FLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQRE----------KEYL 236
L W F + IL +L V L P E K L
Sbjct: 143 LLASL--FGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLL 200
Query: 237 ADTIGCLARNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGW 296
D + L + + F + LP Y + V+ S G+L L LL + ++ G
Sbjct: 201 RDPVLWLLLALLLFGFAFFALLTYLPLYQE-VLGLSALLAGLLLGLAGLLGAIGRLLLGR 259
Query: 297 FSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFY 356
SD L + R + + + A G+ L S L+V L +G F
Sbjct: 260 LSDRLGRR-------RRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFP 312
Query: 357 PSLKVNALDLSPNYAGTLMAIVNGIGAISGIISP 390
+ + GT + N G++ G + P
Sbjct: 313 ALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
Score = 85.6 bits (212), Expect = 1e-17
Identities = 66/341 (19%), Positives = 111/341 (32%), Gaps = 26/341 (7%)
Query: 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA 630
+ T GL+L +F GY + G L+ +FG + L G+L A+ +L A+
Sbjct: 24 AEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS 83
Query: 631 YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
L+V R +GLG G FPAA L+A W P ERG+ + AG +G + L
Sbjct: 84 --SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLG 141
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTR 750
GLL L W F + +A+L V+ + P + E
Sbjct: 142 GLLASLFG--WRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAE------------- 186
Query: 751 RKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSW 810
A ++ L P + + + ++ Y +
Sbjct: 187 -----EAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGL 241
Query: 811 PVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLA 870
+ + + L + + A+G+ L S + + L
Sbjct: 242 LLGLAGLLGA----IGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLL 297
Query: 871 VMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQ 911
V +G G + + S T + N
Sbjct: 298 VALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAG 338
Score = 54.4 bits (131), Expect = 2e-07
Identities = 55/309 (17%), Positives = 114/309 (36%), Gaps = 25/309 (8%)
Query: 252 WGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTV 311
G ++ LP Y+ + S + G+L + L L +AG SD + + + +
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGL 69
Query: 312 IRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYA 371
+ + ++G + +S L++ L + G +P+ D P
Sbjct: 70 L------LFALGLLLLLFASSLW-----LLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118
Query: 372 -GTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNI 430
G + +++ + + P L G+L G FL++ + A++A + L+ +
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASLFGW--RAAFLILAILALLAAVLAALLLPRPP 176
Query: 431 FSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPS-LKVNALD 489
+ A + PA ++L L++ L G AF L L
Sbjct: 177 PESKRPKPAEEAPAPLVPAWKLLLRDPV---LWLLLALLLFGFAFFALLTYLPLYQEVLG 233
Query: 490 LSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVF 549
LS AG L+ + +GAI ++ L L +L ++ ++++ +
Sbjct: 234 LSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLL-------LALLLLILAALGLAL 286
Query: 550 MGSGKIQSW 558
+ + W
Sbjct: 287 LSLTESSLW 295
Score = 52.4 bits (126), Expect = 8e-07
Identities = 63/350 (18%), Positives = 115/350 (32%), Gaps = 56/350 (16%)
Query: 380 GIGAISGIISPYL---IGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVI 436
G + + YL +GI G+L + L L +AG SD + + + ++
Sbjct: 11 GRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLL 70
Query: 437 RKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYA- 495
+ ++G + +S L++ L + G +P+ D P
Sbjct: 71 ------LFALGLLLLLFASSLW-----LLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119
Query: 496 GTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAYVFM----- 550
G + +++ + + P L G+L ++ WR F I + ++ V +
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLA---SLFGWRAAFLILAILALLAAVLAALLLPRPP 176
Query: 551 --GSGKIQSWNEPRHLLPEESQ------------------------------QYEFDWDE 578
+ P L+P Q
Sbjct: 177 PESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSA 236
Query: 579 TTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTI-LTPMAAYMGPVWL 637
GL+LG I + G L+ + G + L +L + + L ++ +WL
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296
Query: 638 IVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISS 687
+V G G G FPA N L++ PK ERG +G +
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
Score = 34.3 bits (79), Expect = 0.38
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 9/186 (4%)
Query: 940 SFNFPLFKYVLRKHADKYNRFQDLPPTPWKEMATSW---PVIALVITQVGHDWGLFTIAA 996
+ K + + P P PV+ L++ + + F +
Sbjct: 164 AAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLT 223
Query: 997 DLPKY---FASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGP 1053
LP Y + LL+ L + L + +R R + A +
Sbjct: 224 YLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDR---LGRRRRLLLALLLLILA 280
Query: 1054 AVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAV 1113
A+G+ L S + + L V +G G + + S T + N G++
Sbjct: 281 ALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSL 340
Query: 1114 SGIFSA 1119
G
Sbjct: 341 GGALGP 346
Score = 33.6 bits (77), Expect = 0.61
Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 15/164 (9%)
Query: 993 TIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMG 1052
+A DL GLL L + AG LSD R+ + L
Sbjct: 22 YLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLL----------L 71
Query: 1053 PAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYA-ATLMAIVNGLG 1111
A+G++L ++ +L V+ G+G G +P+ D P + +++
Sbjct: 72 FALGLLLLLFASSLWLLLVLRVLQGLG-GGALFPAAAALIADWFPPEERGRALGLLSAGF 130
Query: 1112 AVSGIFSAPLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVF 1155
+ L G++ ++ WR F + I+ + + +
Sbjct: 131 GLGAALGPLLGGLLA---SLFGWRAAFLILAILALLAAVLAALL 171
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 92.8 bits (231), Expect = 6e-20
Identities = 76/358 (21%), Positives = 129/358 (36%), Gaps = 39/358 (10%)
Query: 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ 127
E + GL+LS+F Y I G ++ + + L G++ AI L F
Sbjct: 24 EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF--FGFST 81
Query: 128 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF 187
S + AL G+ +G +P + +W +ERG SF + +G L F
Sbjct: 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF 141
Query: 188 LLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS--------------HPYISQREK 233
+ W +F + GI+ ++ + L + P S ++E+
Sbjct: 142 GIAEL-YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEE 200
Query: 234 EYLADTIGC--LARNKIGHDWGL-----------FMISADLPKYMKSVMKFSIAKNGVLS 280
E I + NK+ W + I P Y+ FS K
Sbjct: 201 ELTKKQIFLQYVLLNKVL--WYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAF 258
Query: 281 SLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQIL 340
+L L + ++AGW SD L + + V + + V + A +
Sbjct: 259 TLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV-----SLLVYWLNPAANPLMD 313
Query: 341 VVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISGIISPYLIGILV 397
++ LF +G G + V A +L+P AGT V + GI++ +G L
Sbjct: 314 LICLFALGFLVYGPQM-LIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLA 370
Score = 72.0 bits (177), Expect = 5e-13
Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 3/159 (1%)
Query: 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA 630
E +T GL+L SF Y I G ++ + + L G++ AI +
Sbjct: 22 VEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF--FGF 79
Query: 631 YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
+ G+ +G +P + + W ++ERG +F +G + L
Sbjct: 80 STSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLV 139
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGS 729
+ + W VF + G +AI+ ++ + P S
Sbjct: 140 LFGIAELYS-WHWVFIVPGIIAIIVSLICFLLLRDSPQS 177
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 79.3 bits (196), Expect = 2e-15
Identities = 84/372 (22%), Positives = 133/372 (35%), Gaps = 61/372 (16%)
Query: 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ 127
E+ D G + SA G + G LA + G + L + IL ++FTLL A
Sbjct: 46 EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALA--T 103
Query: 128 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF 187
+ L+ LRF GLG G P LN L++++ P RG +F G IG FL+G+
Sbjct: 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW 163
Query: 188 LLKYTDGDWPEIFYLFGI--LGVLWFVAWCFLCYNDPASHPY-ISQREKEYLADTIGCLA 244
L+ W +FY+ GI L +L + FL P S + +S+R +
Sbjct: 164 LI--PVFGWRSLFYVGGIAPLLLLLLL-MRFL----PESIDFLVSKRPETVRRIVNAIAP 216
Query: 245 RNKIGHDWGLFMISADLP------------KYMKSVMKF-------SIAKNGVLSSLPFL 285
+ + L A K + + + + + LP L
Sbjct: 217 QMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKL 276
Query: 286 L--------------------MWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPA 325
+ + +I+ GW +D L + + ++ +F +
Sbjct: 277 MVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLF 336
Query: 326 SGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAIS 385
S +L V + A M FYP T + GIG +
Sbjct: 337 SPTLLLLLGAIAGFFVNGGQSGLYALMALFYP----------TAIRATGVGWAIGIGRLG 386
Query: 386 GIISPYLIGILV 397
II P L G L+
Sbjct: 387 AIIGPILAGYLL 398
Score = 58.9 bits (143), Expect = 8e-09
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 7/152 (4%)
Query: 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM 632
E+ D G + + G + G LA + G + L + S +F++ T + A
Sbjct: 46 EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVL---LWSILLFSVFTLLCALA 102
Query: 633 GPVW-LIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTG 691
V L++ RF GLG G P N L++ + PK RG ++ G +G + L G
Sbjct: 103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162
Query: 692 LLLKLTNNYWPVVFYLFGAV-AILWFVVWLFI 722
L+ + W +FY+ G +L ++ F+
Sbjct: 163 WLIPVFG--WRSLFYVGGIAPLLLLLLLMRFL 192
Score = 33.5 bits (77), Expect = 0.61
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 411 MWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFT 470
+ +I+ GW +D L + + ++ +F + S +L V +
Sbjct: 298 GVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQS 357
Query: 471 VGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILV 521
A M FYP T + GIG + II P L G L+
Sbjct: 358 GLYALMALFYP----------TAIRATGVGWAIGIGRLGAIIGPILAGYLL 398
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 53.4 bits (129), Expect = 3e-08
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 582 GLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVW-LIVW 640
GL+L + G +I GLL +FG K L ++ IF + T M A + LI+
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVL---LVGLFIFVLSTAMFALSSNITVLIIA 57
Query: 641 RFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNY 700
RF +G G A L+A P ERG + AGI +G ++ L G+L +
Sbjct: 58 RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-- 115
Query: 701 WPVVFYLFGAVAILWFVVWLFI 722
W F +A+ F++ F+
Sbjct: 116 WRAPFLFLAILALAAFILLAFL 137
Score = 51.5 bits (124), Expect = 1e-07
Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 6/142 (4%)
Query: 77 GLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLT-PFAARQSANWLIAL 135
GL+L+ + G +I GLL +FG K L ++ IF L T FA + LI
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVL---LVGLFIFVLSTAMFALSSNITVLIIA 57
Query: 136 RFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD 195
RF +G G A L+A PP ERG + AG +G + L G L ++
Sbjct: 58 RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL--G 115
Query: 196 WPEIFYLFGILGVLWFVAWCFL 217
W F IL + F+ FL
Sbjct: 116 WRAPFLFLAILALAAFILLAFL 137
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 56.9 bits (138), Expect = 3e-08
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 4/138 (2%)
Query: 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ 127
EF D G SA G + + GG LA + G K L + +F+L T A
Sbjct: 44 EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDF 103
Query: 128 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF 187
+ L+ R G+G G P L L ++ V P RG S ++ G G +S +
Sbjct: 104 PS--LLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG-- 159
Query: 188 LLKYTDGDWPEIFYLFGI 205
+L D W IFY+ G+
Sbjct: 160 VLAAGDAAWRHIFYVGGV 177
Score = 41.9 bits (99), Expect = 0.002
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 599 GGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVW----LIVWRFFEGLGEGTTFPA 654
GG LA + G K L I+S A+F + + A W L+V R G+G G P
Sbjct: 70 GGRLADRIGRKRIL---IVSVALFGLFSLATAQ---AWDFPSLLVARLLTGVGLGGALPN 123
Query: 655 ANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAIL 714
L + + RG + ++ G+ G + +S+ G+L W +FY+ G +L
Sbjct: 124 LIALTSEAVGPRLRGTAVSLMYCGVPFGGAL-ASVIGVLAAGDAA-WRHIFYVGGVGPLL 181
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 55.0 bits (133), Expect = 2e-07
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 2/157 (1%)
Query: 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ 127
+ + G++ SAF Y + G+L+ + ++ + FG++ +AI +L F
Sbjct: 58 DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNIL--FGFSP 115
Query: 128 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF 187
S L G +G +P + W ERG S + IG + ++
Sbjct: 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL 175
Query: 188 LLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS 224
G W FY GI+ ++ + FL + P S
Sbjct: 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS 212
Score = 54.6 bits (132), Expect = 2e-07
Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 2/157 (1%)
Query: 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM 632
+ +T G++ +F Y + G+L+ + ++ + FG++ +AI IL
Sbjct: 58 DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNIL--FGFSP 115
Query: 633 GPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGL 692
V G +G +P + + W + ERG + +G ++ + L
Sbjct: 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL 175
Query: 693 LLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGS 729
+ W FY G +AI+ ++ LF+ P S
Sbjct: 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS 212
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 50.8 bits (122), Expect = 3e-06
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 3/144 (2%)
Query: 76 QGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIAL 135
GLI+S F G +I + G L +FG K +L G + I LL FA +S LI
Sbjct: 48 SGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVG 107
Query: 136 RFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD 195
R GLG G + +++ P RG +GS G G + + + G L
Sbjct: 108 RVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILV-AAIIGLGLNKYSNS 166
Query: 196 --WPEIFYLFGILGVLWFVAWCFL 217
W L + +L + FL
Sbjct: 167 DGWRIPLGLQFVPAILLLIGLLFL 190
Score = 50.0 bits (120), Expect = 6e-06
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 3/144 (2%)
Query: 581 QGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVW 640
GLI+ F G +I + G L +FG K +L G + I +L A LIV
Sbjct: 48 SGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVG 107
Query: 641 RFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNN- 699
R GLG G ++ PK RG +G+ GI G ++ +++ GL L +N
Sbjct: 108 RVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILV-AAIIGLGLNKYSNS 166
Query: 700 -YWPVVFYLFGAVAILWFVVWLFI 722
W + L AIL + LF+
Sbjct: 167 DGWRIPLGLQFVPAILLLIGLLFL 190
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 50.3 bits (121), Expect = 4e-06
Identities = 66/341 (19%), Positives = 120/341 (35%), Gaps = 28/341 (8%)
Query: 92 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW-LIALRFFEGLGEGTTFPAL 150
+P G L +FGG+ +L I L FA + W L+ + GL G +F
Sbjct: 67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVG 125
Query: 151 NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK-YTDGDWPEIFYLFGILGVL 209
+ + P ++G AGN +G + ++ + + W + ++ + +
Sbjct: 126 MPNASFFFPKEKQGLALGIAGAGN-LGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184
Query: 210 WFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARNKIGHDWGLFM-----------IS 258
V + P + + L + NK W L + S
Sbjct: 185 AAVLAWLGMNDVPEHRASVKPQLPAQLKA----VFSNK--DTWLLSLLYFATFGGFVGFS 238
Query: 259 ADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSD-YLVSKDIFSVTVIRKIFT 317
A LP Y+ + S G+++ L L+ L + GW SD + +V V +
Sbjct: 239 AYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAA 298
Query: 318 TIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAI 377
+ S+ S+ + + G+ F K+ + P G + I
Sbjct: 299 ALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVF----KMIPVIF-PKETGAVTGI 353
Query: 378 VNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVA 418
V IG + G P G+ + G + F+L+ +VA
Sbjct: 354 VGAIGGLGGFFLPLAFGVSLDLTGS-YTGAFMLLLAFYLVA 393
Score = 39.6 bits (93), Expect = 0.009
Identities = 68/340 (20%), Positives = 105/340 (30%), Gaps = 81/340 (23%)
Query: 439 IFTTIASVGPASGVILA-SYAGCDQILVVTLFT--------VGMAFMGFFYPSLKVNALD 489
I + + + P G+ A +Y Q+LV+ L VGM FF+P
Sbjct: 83 ILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFP-------- 134
Query: 490 LSPNYAGTLMAIVNGIG----AISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNV 545
G + I G G A++ +++P + L WR V I + I V
Sbjct: 135 --KEKQGLALGI-AGAGNLGVAVAQLVAPLVAVAFG----FLAWRNVAGIYVVALAIAAV 187
Query: 546 AYVFMGSGKIQSWNEPRHLLPEE-------------SQQY-------------------- 572
+ + + LP + S Y
Sbjct: 188 LAWLGMNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVT 247
Query: 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGF----GILSTAIFTILTPM 628
+F T GLI F + GG L+ + GG+ L+ A+ ++
Sbjct: 248 QFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTG 307
Query: 629 AAYMGPVWLIVW-----RFFEGLGEGTTFPAANQLLAAWIP---KTERGKVGAFVWAGII 680
+ G + V F GLG G+ F IP E G V V A
Sbjct: 308 FGHGGSFVVFVAVFLALFVFAGLGNGSVF--------KMIPVIFPKETGAVTGIVGAIGG 359
Query: 681 MGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWL 720
+G G+ L LT +Y L + + W
Sbjct: 360 LGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399
Score = 36.1 bits (84), Expect = 0.12
Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 597 IPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVW-LIVWRFFEGLGEGTTFPAA 655
+P G L +FGG+ +L I + A W L+V GL G +F
Sbjct: 67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVG 125
Query: 656 NQLLAAWIPKTERGKV-GAFVWAGIIMGTVISSSLTGLLLKLT-NNYWPVVFYLFGAVAI 713
+ + PK ++G G + G ++ + L+ W V ++
Sbjct: 126 MPNASFFFPKEKQGLALGIAGAGNL--GVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALA 183
Query: 714 LWFVV-WLFIG 723
+ V+ WL +
Sbjct: 184 IAAVLAWLGMN 194
Score = 30.3 bits (69), Expect = 6.2
Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 35/163 (21%)
Query: 1006 GLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGC 1065
GLL A+P L + G L+D R+W I + + P +G+ A
Sbjct: 52 GLLVAIPILVGALLRLPYGFLTDRFGGRKWT-------ILSMLLLLIPCLGLAFAVTYPS 104
Query: 1066 NKVLAVM---------FFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLG----A 1112
L V+ FA+GM F++P + I G G A
Sbjct: 105 TWQLLVIGLLLGLAGASFAVGMPNASFFFP----------KEKQGLALGI-AGAGNLGVA 153
Query: 1113 VSGIFSAPLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVF 1155
V+ + + + WR V + + LA+ + +
Sbjct: 154 VAQLVAPLVAVAF----GFLAWRNVAGIYVVALAIAAVLAWLG 192
>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease. This protein is
a part of the Major Facilitator Superfamily (Pfam family
pfam07690). Member of this family are found in a number
of proteobacterial genomes, but only in the context of
having genes for 4-hydroxyphenylacetate (4-HPA)
degradation. The protein is characterized by Prieto, et
al. (PMID:9315705) as 4-hydroxyphenylacetate permease in
E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are
shown to competitively inhibit 4-HPA transport and
therefore also interact specificially.
Length = 412
Score = 49.6 bits (118), Expect = 7e-06
Identities = 78/367 (21%), Positives = 143/367 (38%), Gaps = 49/367 (13%)
Query: 77 GLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALR 136
GL + FY YVI IP ++ G + + ++ I + T FA L LR
Sbjct: 46 GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT--GPESLYLLR 103
Query: 137 FFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDG-- 194
G+ E P + L W P R + + + LSG++L DG
Sbjct: 104 ILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL-DGLM 162
Query: 195 ---DWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARNKIGHD 251
W +F L G V+ V F + P ++ + +K+ L + I +++ +
Sbjct: 163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMI---DNDQLTLE 219
Query: 252 WGLFMIS-ADLPK-------YMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWF--SDYL 301
+ A +P+ + ++M +++A + ++L + +W I+ + S +
Sbjct: 220 QPEGAFAHAAMPQRSMLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNI 279
Query: 302 VSKDIFSVTVI------------------RKIFTTIASVGPASGVILASYAGCDQILVVT 343
+ + ++ RK T + + A+G +LAS + I
Sbjct: 280 MIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLI---Q 336
Query: 344 LFTVGMAFMGFF-----YPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVP 398
L + MA MG F + + ++ L +A++N G I +SP+LIGIL
Sbjct: 337 LLGIIMASMGSFSAMAIFWTTPDQSISLQARAIA--IAVINATGNIGSALSPFLIGILKD 394
Query: 399 NNGVLSS 405
G +S
Sbjct: 395 ATGSFNS 401
Score = 43.1 bits (101), Expect = 7e-04
Identities = 40/171 (23%), Positives = 66/171 (38%), Gaps = 6/171 (3%)
Query: 579 TTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLI 638
T GL FY YVI IP ++ G + + ++ I + T A GP L
Sbjct: 43 TMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT--GPESLY 100
Query: 639 VWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTN 698
+ R G+ E P L W P R + A + + + L+G +L L
Sbjct: 101 LLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160
Query: 699 NY----WPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETI 745
W +F L G +++ V+ F P ++ +++ L+E I
Sbjct: 161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMI 211
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 49.6 bits (119), Expect = 8e-06
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 16/142 (11%)
Query: 77 GLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALR 136
G++L +F +GY L+ +FG K L L TA+ +LT F+ + + R
Sbjct: 139 GVLLGSFVFGY---------LSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT--VFLVFR 187
Query: 137 FFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDW 196
G+G G + L +++P +R +G+ + +G V ++ F+ DW
Sbjct: 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-----DW 242
Query: 197 PEIFYLFGILGVLWFVAWCFLC 218
+ + L+F+ F+
Sbjct: 243 RWLQLAVSLPTFLFFLLSWFVP 264
Score = 46.2 bits (110), Expect = 9e-05
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 582 GLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPV--WLIV 639
G++LGSF +GY L+ +FG K L L TA+ +LT + P +V
Sbjct: 139 GVLLGSFVFGY---------LSDRFGRKKVLLLSTLVTAVSGVLTAFS----PNYTVFLV 185
Query: 640 WRFFEGLGEGTTFPAANQLLAAWIPKTERGKVG 672
+R G+G G + A L ++PK +R VG
Sbjct: 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVG 218
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 47.3 bits (113), Expect = 4e-05
Identities = 50/251 (19%), Positives = 82/251 (32%), Gaps = 28/251 (11%)
Query: 88 VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTF 147
++ I G L KFG ++T +L AI L A QS + L+ LR F G+ G +F
Sbjct: 51 AVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL-AVQSYSVLLLLRLFIGIA-GGSF 108
Query: 148 PALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSF----LSGFLLK------YTDGDW- 196
+ ++ + P +G +G + F + G L+ + W
Sbjct: 109 ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWA 168
Query: 197 ----PEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARNKIGHDW 252
P L L + + A + R L + H W
Sbjct: 169 FVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTW 228
Query: 253 GLFM-----------ISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYL 301
L + +S+ + K S G +SL LL L + G SD L
Sbjct: 229 ILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL 288
Query: 302 VSKDIFSVTVI 312
++ +
Sbjct: 289 GGARKLLMSFL 299
Score = 39.2 bits (92), Expect = 0.011
Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 17/154 (11%)
Query: 593 VIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVW-LIVWRFFEGLGEGTT 651
++ I G L KFG ++T +L AI + +A L++ R F G+ G +
Sbjct: 51 AVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ--SYSVLLLLRLFIGIA-GGS 107
Query: 652 FPAANQLLAAWIPKTERGKVGAFV--W-------AGIIMGTVISSSLTGLLLKLTNNY-W 701
F + ++ + PK +G W A +M +I S + G L + W
Sbjct: 108 FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGW 167
Query: 702 PVVFYLFG---AVAILWFVVWLFIGYSEPGSNPF 732
V G A+L F V +P +
Sbjct: 168 AFVIVPAGILLLPALLIFFVGADTPPGKPATGKL 201
Score = 30.0 bits (68), Expect = 7.2
Identities = 70/369 (18%), Positives = 116/369 (31%), Gaps = 103/369 (27%)
Query: 349 MAFMGFF-YPSLKVNA----LDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVL 403
++F +F + L V L LS G L+A+ GA+ II +G LV G
Sbjct: 12 LSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRII----LGFLVDKFGPR 67
Query: 404 SSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGCDQI 463
+ L+ L AI W L ++ + ++R + AG
Sbjct: 68 YTTTLSLL-LLAIPCLWAG--LAVQSYSVLLLLR---------------LFIGIAGGS-- 107
Query: 464 LVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIG----AISGIISPYLIGI 519
F M ++ FF+P GT + + G G ++ + P +IG
Sbjct: 108 -----FASCMPWISFFFP----------KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS 152
Query: 520 LVPN---STMLEWRLVFWI-SFGVIMITNVAYVFMG-------------SGKIQSWNEPR 562
L+ L W F I G++++ + F+G S K W+
Sbjct: 153 LIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGT 212
Query: 563 HLLPEESQQYE--------------------------------FDWDETTQGLILGSFYW 590
L ++ + + F + T G
Sbjct: 213 GALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGL 272
Query: 591 GYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGP------VWLIVWRFFE 644
+ GG ++ + GG L L A+ L + V + FF
Sbjct: 273 LGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFS 332
Query: 645 GLGEGTTFP 653
G G G+TF
Sbjct: 333 GAGNGSTFA 341
Score = 30.0 bits (68), Expect = 8.5
Identities = 34/184 (18%), Positives = 57/184 (30%), Gaps = 32/184 (17%)
Query: 990 GLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTL-------TR 1042
+ I DL A G L A+P L + G L D R +++L
Sbjct: 24 AVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW 83
Query: 1043 KIFATAASMGPAVGIILASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAAT 1102
A + + + +G + FA M ++ F++P T
Sbjct: 84 AGLAVQSYSVLLLLRLFIGIAGGS-------FASCMPWISFFFP----------KKIQGT 126
Query: 1103 LMAIVNGLG----AVSGIFSAPLIGIMTPN---STMSEWRLVFWL-TFIILAVTNLFYLV 1154
+ + G G V+ P+IG + W F + IL + L
Sbjct: 127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFF 186
Query: 1155 FGSA 1158
G+
Sbjct: 187 VGAD 190
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 45.3 bits (108), Expect = 2e-04
Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 5/167 (2%)
Query: 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR 126
+ E G +++A+ G + LL + + L + + LL+ A
Sbjct: 41 ADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA-- 98
Query: 127 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSG 186
S L+ R GL G + L A+ VPP +RG+ + VF G + TV L
Sbjct: 99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT 158
Query: 187 FLLKYTDGDWPEIFYLFGILGVL-WFVAWCFLCYNDPASHPYISQRE 232
FL + W F +L +L + W L ++ + R
Sbjct: 159 FLGQLF--GWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRT 203
Score = 39.1 bits (92), Expect = 0.012
Identities = 40/204 (19%), Positives = 75/204 (36%), Gaps = 21/204 (10%)
Query: 521 VPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDWDETT 580
+ W + ++ I +V +G LLP + E
Sbjct: 4 PATARKPMWLALLALALAAFAIGTTEFVPVG------------LLPPIAAD--LGVSEGA 49
Query: 581 QGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVW-LIV 639
G ++ ++ G + LL + + L + A+F + ++A L++
Sbjct: 50 AGQLITAYALGVALGAPLLALLTGRLERRRLL---LGLLALFIVSNLLSALAPSFAVLLL 106
Query: 640 WRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNN 699
R GL G + A L A +P +RG+ A V+ G+ + TV+ L L +L
Sbjct: 107 ARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG- 165
Query: 700 YWPVVFYLFGAVAIL-WFVVWLFI 722
W F +A+L ++W +
Sbjct: 166 -WRATFLAIAVLALLALLLLWKLL 188
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 42.3 bits (100), Expect = 0.001
Identities = 67/306 (21%), Positives = 112/306 (36%), Gaps = 43/306 (14%)
Query: 132 LIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 191
L+ R +G G + LA++ PP +RG GSF G +G + ++ L+ LL Y
Sbjct: 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAA-LTVLLLSY 157
Query: 192 TDGD-----W----PEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADT-IG 241
GD W P + +L L+ L N + + +EK I
Sbjct: 158 LLGDDALLEWGWRIPFLVSAVLVLIGLY------LRRNLEETPVFEKAQEKHKKKRGPIA 211
Query: 242 CLARNK-----------IGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLT 290
I ++I+ LP Y+ + S ++ L +L ++T
Sbjct: 212 ETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFIT 271
Query: 291 AIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGV-ILASYAGCDQILVVTLFTVGM 349
++G SD + R + + V +L + + +GM
Sbjct: 272 IPLSGALSDRIGR---------RPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGM 322
Query: 350 AFMGFFYPSLKVNAL-DLSP---NYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSS 405
A +G Y + L +L P Y G +A N GAI G +PY+ LV G +
Sbjct: 323 ALIGGMYTGPMGSFLPELFPTEVRYTGASLA-YNLAGAIFGGFAPYIAAALVAMTGDWYA 381
Query: 406 LPFLLM 411
+ + L
Sbjct: 382 IGYYLA 387
Score = 32.2 bits (74), Expect = 1.5
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 600 GLLAQKFGGKHTLGFGILSTAIFTI---LTPMAAYMG---PVWLIVWRFFEGLGEGTTFP 653
G + G K TL +L I T+ L P A +G P+ L++ R +G G +
Sbjct: 56 GHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWG 115
Query: 654 AANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLL 694
A LA + P +RG G+F G +G + ++LT LLL
Sbjct: 116 GAALYLAEYAPPGKRGFYGSFQQVGAPVGLL-LAALTVLLL 155
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 40.0 bits (94), Expect = 0.008
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Query: 77 GLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIF-TLLTPFAARQSANWLIAL 135
LI AF+ GY IM +P GLL +K G K + G+L A+ L P A+ +S + +
Sbjct: 51 SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVA 110
Query: 136 RFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLL 189
F G G A N + P + A N +G + L L+
Sbjct: 111 LFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI 164
Score = 38.8 bits (91), Expect = 0.016
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 582 GLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIF-TILTPMAAYMGPVWLIVW 640
LI +F+ GY IM +P GLL +K G K + G+L A+ + P A+ + +V
Sbjct: 51 SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVA 110
Query: 641 RFFEGLGEGTTFPAANQLLAAWIP---KTER-GKVGAFVWAGIIMGTVISSSL 689
F G G AAN + R AF G I+G ++ SSL
Sbjct: 111 LFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 39.6 bits (93), Expect = 0.009
Identities = 40/146 (27%), Positives = 55/146 (37%), Gaps = 6/146 (4%)
Query: 76 QGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGIL---STAIFTLLTPFAARQSANWL 132
GL++S F G I + G L+ +FG K +L L AI L FA S L
Sbjct: 73 WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA--LSVEML 130
Query: 133 IALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFL-SGFLLKY 191
I R G+G G + L++ P RG + S G + + SG +
Sbjct: 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN 190
Query: 192 TDGDWPEIFYLFGILGVLWFVAWCFL 217
W L I L F+ FL
Sbjct: 191 NTLGWRIPLGLQLIPAGLLFLGLFFL 216
Score = 33.1 bits (76), Expect = 0.86
Identities = 37/146 (25%), Positives = 56/146 (38%), Gaps = 6/146 (4%)
Query: 581 QGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGIL---STAIFTILTPMAAYMGPVWL 637
GL++ F G I + G L+ +FG K +L L AI L A + L
Sbjct: 73 WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVE--ML 130
Query: 638 IVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISS-SLTGLLLKL 696
IV R G+G G L+ PK RG + + I G +++ +G +
Sbjct: 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN 190
Query: 697 TNNYWPVVFYLFGAVAILWFVVWLFI 722
W + L A L F+ F+
Sbjct: 191 NTLGWRIPLGLQLIPAGLLFLGLFFL 216
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 38.4 bits (89), Expect = 0.019
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 24/164 (14%)
Query: 600 GLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVW-LIVWRFFEGLGEGTTFPAANQL 658
G LA + G K L L I +L +A +W ++ R GL G P AN L
Sbjct: 75 GGLADRKGRKIMLLRSALGMGIVMVLMGLAQ---NIWQFLILRALLGL-LGGFVPNANAL 130
Query: 659 LAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLL-----KLTNNYWPV--VFYLFGAV 711
+A +P+ + G WA +GT+ + ++G LL L + + + VF++ +V
Sbjct: 131 IATQVPRNKSG------WA---LGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV 181
Query: 712 AILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVL 755
L F+V LF P +S+KEM ++ E + SL K VL
Sbjct: 182 LFLCFLVTLF--CIRENFQP-VSKKEMLHMREVVTSLKNPKLVL 222
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 38.4 bits (90), Expect = 0.022
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Query: 580 TQGLILGSFYWGYVIMH-IPGGLLAQKF-GGKHTLGFGILSTAIFTILTPMAAYMGPVWL 637
T L S Y V + I GG LA + G + T+ G + AI ++ +++ GP L
Sbjct: 61 THATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGL 120
Query: 638 IVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFV--WAGIIMGTVISSSLTGLLLK 695
+ +G G P + LL PK + + G F + GI +G++I+ +TGL
Sbjct: 121 YIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGL--- 177
Query: 696 LTNNY-WPVVFYLFGAVAILWFVVWLFI 722
L NY W V F L I+ V++L
Sbjct: 178 LAINYGWHVGFGLAAVGMIIGLVIFLLG 205
Score = 33.8 bits (78), Expect = 0.53
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 11/148 (7%)
Query: 74 KTQGLILSAFYWGYVIMH-IPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQSANW 131
+T L + Y V + I GG LA + G + T+ G + AI L+ ++
Sbjct: 60 ETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG 119
Query: 132 LIALRFFEGLGEGTTFPALNTLLAQWVPPTE---RGKIGSFVFAGNQIGTVFSSFLSGFL 188
L +G G P +++LL + P + G F N IG++ + ++G L
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGIN-IGSLIAPIITGLL 178
Query: 189 LKYTDGDWPEIFYLFG---ILGVLWFVA 213
+ W F L I+G++ F+
Sbjct: 179 AI--NYGWHVGFGLAAVGMIIGLVIFLL 204
>gnl|CDD|182260 PRK10133, PRK10133, L-fucose transporter; Provisional.
Length = 438
Score = 38.0 bits (88), Expect = 0.026
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 564 LLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFT 623
LLP+ Q F GLI +FY+GY I+ IP G+L +K K + G+ A+
Sbjct: 48 LLPQFQQA--FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105
Query: 624 ILT-PMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKT 666
L P A M +V F G G AAN + P++
Sbjct: 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES 149
Score = 36.0 bits (83), Expect = 0.12
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 69 FDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGIL 112
F GLI SAFY+GY I+ IP G+L +K K + G+
Sbjct: 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 38.1 bits (89), Expect = 0.027
Identities = 68/376 (18%), Positives = 133/376 (35%), Gaps = 46/376 (12%)
Query: 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR 126
+ + L+ + G+ + G L+ ++G + L G+ A+ +L +
Sbjct: 33 ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-- 90
Query: 127 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSG 186
+ L+ LRF + G L+ P E +I S + + + L G
Sbjct: 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG 150
Query: 187 FLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARN 246
++L + W IF + G+L F+ P + PY ++ + +T L ++
Sbjct: 151 YILVWLS--WHAIFAFLSLAGILLSALIFFIL---PETLPYEARIQISTYFETFLLLLKS 205
Query: 247 KIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLS----------SLPFLLMWLTAIVAGW 296
K WG +I F V L F L + I G+
Sbjct: 206 K--MFWGYALIYG---ASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGF 260
Query: 297 FSDYLVSK-----------DIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLF 345
+ + K +F+V+ + T I +G + +I ++
Sbjct: 261 LNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIG--------PMMFVGI 312
Query: 346 TVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSS 405
M AL+ P+ AGT A+ + + G I YL+ ++ N S
Sbjct: 313 GNSMI-----SSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMS 367
Query: 406 LPFLLMWLTAIVAGWF 421
L L++ + +++A ++
Sbjct: 368 LSCLVLAVVSVLAFYY 383
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 38.1 bits (88), Expect = 0.036
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 47/201 (23%)
Query: 342 VTLFTVGMAFMGFFYPSLKVNA-LDLSPNYAGTLMAIVNGIGAISGIISPYLIGI----- 395
+T+FT AF+G + SL NA L L + V + I G+I + I
Sbjct: 176 ITIFTYASAFLGLYIWSLFKNARLTLC-------ITCVFPLIYICGVICNKKVKINKKTS 228
Query: 396 LVPNNGVLSSLPFLLMWLTAIVA-----GWFSDYLVSKNIFSVTVIRKIFTTIASVGPAS 450
L+ NN +S + L+ + +V+ + +S+ ++S +++ F +G +
Sbjct: 229 LLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMIN 288
Query: 451 GVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLS---PN---YAGTLMAIVNG 504
G ILASYA GF+Y + ++ DLS PN + G++++I+ G
Sbjct: 289 GFILASYA-----------------FGFWYGT-RIIISDLSNQQPNNDFHGGSVISILLG 330
Query: 505 IGAISGIISPYLIGILVPNST 525
+ +IS +++ I++PN T
Sbjct: 331 V-----LISMFMLTIILPNIT 346
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 37.7 bits (88), Expect = 0.040
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 95 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPALNTL 153
G LA++FG + ++ST FTL + + +I R +G G G P +
Sbjct: 58 GWLAKRFGTRRLF---LISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFST 114
Query: 154 LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFV- 212
L PP +RG+ + + L G++++ W IF + +G++ V
Sbjct: 115 LLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY--HWRWIFLINVPIGIIVVVV 172
Query: 213 AWCFLCYNDPASH 225
A+ L + PA+
Sbjct: 173 AFFILPRDKPAAS 185
Score = 36.6 bits (85), Expect = 0.084
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 600 GLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLL 659
G LA++FG + + + ++L +A + +I++R +G G G P + L
Sbjct: 58 GWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNL--ELMIIFRVIQGFGGGPLIPLSFSTL 115
Query: 660 AAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNY-WPVVFYLFGAVAILWFVV 718
P +RG+ A +++ + +L G + NY W +F + + I+ VV
Sbjct: 116 LNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW---IIENYHWRWIFLINVPIGIIVVVV 172
Query: 719 WLFI 722
FI
Sbjct: 173 AFFI 176
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 36.3 bits (84), Expect = 0.088
Identities = 35/155 (22%), Positives = 54/155 (34%), Gaps = 6/155 (3%)
Query: 574 FDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMG 633
F T + G + GGLLA KFG + G + + +A +
Sbjct: 33 FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLA 92
Query: 634 PVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLL 693
++L G G + A W P +RG + G +G+ I S L +
Sbjct: 93 ALYLTYG--LASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSV 149
Query: 694 LKLTNNYWPVVFYLFGAVAILWFVVW-LFIGYSEP 727
+ L P F G + +L V+ IGY
Sbjct: 150 INL--EGVPAAFIYMGIIFLLVIVLGAFLIGYPPG 182
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 36.2 bits (82), Expect = 0.090
Identities = 52/290 (17%), Positives = 94/290 (32%), Gaps = 3/290 (1%)
Query: 77 GLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALR 136
GL+LSAF+ GY I + G L ++G + L G+L + TLL A L+ LR
Sbjct: 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILR 101
Query: 137 FFEGLGEGTTFPALNTLLAQWVPPTER--GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDG 194
+GLG G P + LL++W P +G +G L+G LL
Sbjct: 102 LLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLW 161
Query: 195 DWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARNKIGHDWGL 254
W F L +LG+L + L A+ + L + +
Sbjct: 162 GWRAAFLLAALLGLLLLILVLLLDLL-LAAPRLPLAVGLALIELGKLLLLLLILLLGGLV 220
Query: 255 FMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRK 314
++ ++ + G+ F+ + ++
Sbjct: 221 LLLLGLYLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGAAGGLSALVGAAGGL 280
Query: 315 IFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNAL 364
+ + + G ++ D++ + L + L
Sbjct: 281 LALILLGLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAILLLVLL 330
Score = 33.5 bits (75), Expect = 0.63
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 2/161 (1%)
Query: 564 LLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFT 623
LP GL+L +F+ GY I + G L ++G + L G+L + T
Sbjct: 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGT 83
Query: 624 ILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTER--GKVGAFVWAGIIM 681
+L +A +G L++ R +GLG G P A+ LL+ W P+ VG +
Sbjct: 84 LLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGAL 143
Query: 682 GTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722
G + L GLLL W F L + +L ++ L +
Sbjct: 144 GLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLL 184
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 36.1 bits (83), Expect = 0.11
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 600 GLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLL 659
GLLA KFG K + + I++ ++ T L+ +A+ G + L + RF G+G + A+
Sbjct: 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYA 131
Query: 660 AAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVW 719
PK + K AF+ +G +G +I++ + W F+ V +L ++
Sbjct: 132 VESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG--WRAAFF----VGLLPVLLV 185
Query: 720 LFIGYSEPGSNPFISQK 736
++I P S + K
Sbjct: 186 IYIRARAPESKEWEEAK 202
Score = 30.3 bits (68), Expect = 6.5
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 95 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIAL-RFFEGLGEGTTFPALNTL 153
GLLA KFG K + + I++ ++ T L+ A S ++ L RF G+G + +T
Sbjct: 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLA---SGVIMLTLSRFIVGMGMAGEYACASTY 130
Query: 154 LAQWVPPTERGKIGSFVFAGNQIGTVFSS-FLSGFLLKYTDGDWPEIFY--LFGILGVLW 210
+ P + K +F+ +G IG + ++ F+ F Y W F+ L +L V++
Sbjct: 131 AVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY---GWRAAFFVGLLPVLLVIY 187
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 35.0 bits (80), Expect = 0.27
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 77 GLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALR 136
G+++ AF+WG LA K G K L + F + F Q + + R
Sbjct: 214 GMMVGAFFWGG---------LADKLGRKQCLLICLSVNGFFAFFSSFV--QGYGFFLFCR 262
Query: 137 FFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 185
G G G P + + A+++ +RG+ S++ IG ++++ ++
Sbjct: 263 LLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 34.6 bits (80), Expect = 0.34
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 94 GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR--QSANWLIALRFFEGLGEGTTFPALN 151
G +A + G K G A+F + + + S+ +L RF +G+G G +
Sbjct: 58 AGKIADRSGRKPVAIPG---AALFIIASLLCSLAETSSLFLAG-RFLQGIGAGCCYVVAF 113
Query: 152 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFL--LKYTDGDWPEIFYLFGILGVL 209
+L + R K+ S + I V + L G L LK+ W +FY +G+L
Sbjct: 114 AILRDTLDDRRRAKVLSLLNGITCIIPVLAPVL-GHLIMLKF---PWQSLFYTMAAMGIL 169
Query: 210 WFV 212
+
Sbjct: 170 VLL 172
Score = 30.4 bits (69), Expect = 5.6
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 599 GGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQL 658
G +A + G K G I ++L +A + RF +G+G G + A +
Sbjct: 58 AGKIADRSGRKPVAIPGAALFIIASLLCSLAE--TSSLFLAGRFLQGIGAGCCYVVAFAI 115
Query: 659 LAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVV 718
L + R KV + + GI + + + G L+ + W +FY A+ IL ++
Sbjct: 116 LRDTLDDRRRAKVLSLL-NGITCIIPVLAPVLGHLI-MLKFPWQSLFYTMAAMGILVLLL 173
Query: 719 WLFI 722
LFI
Sbjct: 174 SLFI 177
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 34.1 bits (78), Expect = 0.45
Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 95 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLL 154
GL ++G + + I+ + TL FA + R G+G G + + +
Sbjct: 68 GLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYIT--MFIARLVIGIGMGGEYGSSAAYV 125
Query: 155 AQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW 214
+ P R K + +G +G V ++ + ++ W +F+ IL +++ +
Sbjct: 126 IESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF-ISILPIIFALWL 184
Score = 30.2 bits (68), Expect = 6.2
Identities = 39/232 (16%), Positives = 86/232 (37%), Gaps = 23/232 (9%)
Query: 600 GLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLL 659
GL ++G + + I+ + T+ A G + + + R G+G G + ++ +
Sbjct: 68 GLWGDRYGRRLPMVTSIVLFSAGTLACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYV 125
Query: 660 AAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVW 719
PK R K + +G +G V+++ + L++ + + W +F++ +IL +
Sbjct: 126 IESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFI----SILPIIFA 181
Query: 720 LFIGYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATS 779
L++ + P + + + L T + N L +
Sbjct: 182 LWLRKNIPEAEDWKEKHAGKAL-----VRTMVDILYGGEHRIANIVMTLAAAMVQSAGKR 236
Query: 780 WPVIALVITQVVLISLFYLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAA 831
WP ++ V+++ S P+ L+ T + D GL
Sbjct: 237 WPTFVYLV--VLVLFANLY----------SHPIQDLLPTYLKADLGLSPHTV 276
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 34.5 bits (80), Expect = 0.47
Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 13/123 (10%)
Query: 94 GGLLAQKFGGKH----TLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPA 149
G LLA + G+H + G L A+ L P A S ++ L F G G
Sbjct: 285 GSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--PSLASVLVLFFLFGFSAGLFIVP 342
Query: 150 LNTLLAQWVPPTERGKIGSFVFAGN---QIGTVFSSFLSGFLLKYTDGDWPEIFYLFGIL 206
LN L+ P E GK+ A N Q + L +FYL ++
Sbjct: 343 LNALIQFRAPEKELGKV----LAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398
Query: 207 GVL 209
++
Sbjct: 399 TLI 401
>gnl|CDD|211614 TIGR00885, fucP, L-fucose:H+ symporter permease. This family
describes the L-fucose permease in bacteria.
L-fucose(6-deoxy-L-galactose) is a monosaccharide found
in glycoproteins and cell wall polysaccharides. L-fucose
is used in bacteria through an inducible pathway
mediated by atleast four enzymes: a permease, isomerase,
kinase and an aldolase which are encoded by fucP, fucI,
fucK, fucA respectively. The fuc genes belong to a
regulon comprising of four linked operons: fucO, fucA,
fucPIK and fucR. The positive regulator is encoded by
fucR, whose protein responds to fuculose-1-phosphate,
which acts as an effector [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 408
Score = 34.1 bits (78), Expect = 0.51
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 77 GLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAI 116
L+ SAFY GY IM IP + +K K + G+ A+
Sbjct: 41 ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYAL 80
Score = 32.5 bits (74), Expect = 1.6
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILT-PMA 629
Q F L+ +FY GY IM IP + +K K + G+ A+ L P A
Sbjct: 30 QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA 89
Query: 630 AYMGPVWLIVWRFFEGLGEGTTFPAAN 656
M +V F G G AAN
Sbjct: 90 EIMNYTLFLVGLFILTAGLGFLETAAN 116
>gnl|CDD|183266 PRK11663, PRK11663, regulatory protein UhpC; Provisional.
Length = 434
Score = 33.5 bits (77), Expect = 0.66
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 77 GLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIAL- 135
GL+ + FY Y + G+++ + ++ +G G+++T I +L F+ S+ W AL
Sbjct: 61 GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS---SSLWAFALL 117
Query: 136 ----RFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFL-LK 190
FF+G G +P LL W TERG + + +G + G + L
Sbjct: 118 WVLNAFFQGWG----WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH 173
Query: 191 YTDGDWPEIFYLFGILGVLWFVAWCFLCY 219
Y W + GI+ ++ FLC+
Sbjct: 174 YG---WRYGMMIAGIIAIV---VGLFLCW 196
Score = 32.8 bits (75), Expect = 1.3
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 577 DETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM---G 633
+ GL+ FY Y + G+++ + ++ +G G+++T I IL ++ +
Sbjct: 56 SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFA 115
Query: 634 PVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWA 677
+W ++ FF+G G +P +LL AW +TERG WA
Sbjct: 116 LLW-VLNAFFQGWG----WPVCAKLLTAWYSRTERG----GWWA 150
>gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional.
Length = 471
Score = 32.8 bits (75), Expect = 1.2
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 95 GLLAQKFGGKHTLGFGILSTAI--FTLLTPFAARQSA-NWLIALRFFEGLGEGTTFPALN 151
G LA + G ++ I TAI FTL + F A N L+ R +G+G P
Sbjct: 66 GWLADRVGVRN-----IFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGR 120
Query: 152 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYL---FGILGV 208
+ + VP + +FV Q+G + L G L++Y W IF + GI+G
Sbjct: 121 LTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHW--IFLINIPVGIIGA 178
Query: 209 L 209
+
Sbjct: 179 I 179
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 32.8 bits (75), Expect = 1.3
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 579 TTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPV--- 635
+ G + G ++G+ LA K G K G ++ I T+ + ++ P
Sbjct: 65 ASIGTLAGQLFFGW---------LADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVM 115
Query: 636 -WLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWA----GIIMGTVISSSLT 690
L WRF+ G+G G +P + + + + K RG + A V+A GI+ G +++ +
Sbjct: 116 ATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175
Query: 691 G 691
Sbjct: 176 A 176
>gnl|CDD|217647 pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts
as a virulence factor. In Bordetella pertussis, brkB is
essential for resistance to complement-dependent killing
by serum. This family was originally predicted to be
ribonuclease BN, but this prediction has since been
shown to be incorrect.
Length = 255
Score = 32.2 bits (74), Expect = 1.5
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 6/110 (5%)
Query: 306 IFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALD 365
+ + + + + I +L + L + A + F P+ KV
Sbjct: 129 LLLSVFLPSLLGFLILLLGLGLEIAVLLQLLRWLLSLLLLFLLFALLYRFLPNRKVRWRA 188
Query: 366 LSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNN--GVLSSLPFLLMWL 413
P G L+A V +S S YL N+ G L +L LL+WL
Sbjct: 189 ALP---GALLAAV-LWLLLSYGFSLYLSNFANYNSTYGSLGALIVLLLWL 234
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 32.2 bits (74), Expect = 1.6
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 160 PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD-----WPEIFYLFGILGVLWFVAW 214
P ER + S+ +G + + L L+K G + + G++GV+ +
Sbjct: 144 PQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILL-LF 202
Query: 215 CFL-CYNDPASHPYISQREKEYLADTIGCLARNK 247
CF K L D+ + +N+
Sbjct: 203 CFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNR 236
Score = 30.3 bits (69), Expect = 7.9
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 1074 FAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIMTPNSTMSE 1133
F I + ++ F+Y + LS A T+ + + A + P++G + + T S
Sbjct: 28 FGIVVLYLLFFYTDV----FGLSAALAGTIFLVARIIDA----ITDPIMGFIV-DRTRSR 78
Query: 1134 W-RLVFWLTFIILAVTNLFYLVF 1155
W R WL + + + L+F
Sbjct: 79 WGRFRPWLLWGAIPFAIVAVLLF 101
>gnl|CDD|220485 pfam09945, DUF2177, Predicted membrane protein (DUF2177). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 128
Score = 30.6 bits (70), Expect = 1.7
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 674 FVWAGIIMGTVISSSLTGLLLKLTNNYWP-VVFYLFGAVAILWFVVW 719
+W G + + LL + P VVFYL I+ FVV
Sbjct: 20 AIWLGTVAKPFYRPQIGDLLAD-SPRLAPAVVFYLLYVAGIVVFVVL 65
>gnl|CDD|183255 PRK11646, PRK11646, multidrug resistance protein MdtH; Provisional.
Length = 400
Score = 32.0 bits (73), Expect = 2.2
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 92 IPGGLLAQKFGGKHTLGFGILSTAI-FTLLTPFAARQSANWLIALR-FFEGLGEGTTF-P 148
I GG +A +FG K + G+L A F + A WL+ L GLG GT F P
Sbjct: 64 IFGGAIADRFGAKPMIVTGMLMRAAGFATM----AIAHEPWLLWLSCILSGLG-GTLFDP 118
Query: 149 ALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 191
L+ + + P +RG+ S + + G V + L +LL+Y
Sbjct: 119 PRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY 161
>gnl|CDD|222342 pfam13722, DUF4161, C-terminal domain on CstA (DUF4161). This
domain is found at the C=terminal of most known CstA
domain-containing proteins. The function is not known.
Length = 127
Score = 29.8 bits (68), Expect = 3.3
Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 20/90 (22%)
Query: 599 GGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQL 658
G + + G L ++TAI L Y G +W F ANQL
Sbjct: 38 LGNVYKPLGDTKWLPNKYVATAIAVALWGYLLYGGG-INTLWPLFG---------IANQL 87
Query: 659 LAA--------WIPKTERGKVGAFVWAGII 680
LAA W+ K GK + W +I
Sbjct: 88 LAALALLLVTVWLAK--MGKPTKYAWITLI 115
>gnl|CDD|238462 cd00922, Cyt_c_Oxidase_IV, Cytochrome c oxidase subunit IV.
Cytochrome c oxidase (CcO), the terminal oxidase in the
respiratory chains of eukaryotes and most bacteria, is a
multi-chain transmembrane protein located in the inner
membrane of mitochondria and the cell membrane of
prokaryotes. It catalyzes the reduction of O2 and
simultaneously pumps protons across the membrane. The
number of subunits varies from three to five in bacteria
and up to 13 in mammalian mitochondria. Subunits I, II,
and III of mammalian CcO are encoded within the
mitochondrial genome and the remaining 10 subunits are
encoded within the nuclear genome. Found only in
eukaryotes, subunit IV is the largest of the
nuclear-encoded subunits. It binds ATP at the matrix
side, leading to an allosteric inhibition of enzyme
activity at high intramitochondrial ATP/ADP ratios. In
mammals, subunit IV has a lung-specific isoform and a
ubiquitously expressed isoform.
Length = 136
Score = 29.5 bits (67), Expect = 4.1
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 528 EWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQ 571
EW+ VF I IT V + + + H EE Q+
Sbjct: 73 EWKTVFGGVLAFIGITGVIFGLQ---RAFVYGPKPHTFTEEWQE 113
>gnl|CDD|184957 PRK14995, PRK14995, methyl viologen resistance protein SmvA;
Provisional.
Length = 495
Score = 30.9 bits (70), Expect = 4.6
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 90 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFP 148
M +P G L + G K L +L +F L + AA +A+WLIA R +G P
Sbjct: 57 MVLPMGALGDRIGFKRLL---MLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVP 113
Query: 149 A-LNTLLAQWVPPTERG-KIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIF 200
A L + A + +R +G + G+ G F + G LL++ W +F
Sbjct: 114 ATLAGIRATFTEEKQRNMALGVWAAVGSG-GAAFGPLVGGILLEHF--YWGSVF 164
>gnl|CDD|179524 PRK03001, PRK03001, M48 family peptidase; Provisional.
Length = 283
Score = 30.4 bits (69), Expect = 4.8
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 18/103 (17%)
Query: 428 KNIFSVTVIRKIFTTI-ASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKV- 485
K + I +F I +G + G+++A LF +GM F +++ V
Sbjct: 5 KTAMLMAAITALFIVIGGMIGGSQGMLIA-----------LLFALGMNFFSYWFSDKMVL 53
Query: 486 ---NALDLSPNYAGTLMAIVNGIGAISGIISP--YLIGILVPN 523
NA ++ N A +V + +G+ P YLI PN
Sbjct: 54 KMYNAQEVDENTAPQFYRMVRELAQRAGLPMPKVYLINEDQPN 96
Score = 30.0 bits (68), Expect = 6.4
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 18/103 (17%)
Query: 304 KDIFSVTVIRKIFTTI-ASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKV- 361
K + I +F I +G + G+++A LF +GM F +++ V
Sbjct: 5 KTAMLMAAITALFIVIGGMIGGSQGMLIA-----------LLFALGMNFFSYWFSDKMVL 53
Query: 362 ---NALDLSPNYAGTLMAIVNGIGAISGIISP--YLIGILVPN 399
NA ++ N A +V + +G+ P YLI PN
Sbjct: 54 KMYNAQEVDENTAPQFYRMVRELAQRAGLPMPKVYLINEDQPN 96
>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain)
[Inorganic ion transport and metabolism].
Length = 451
Score = 30.3 bits (69), Expect = 6.6
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 14/51 (27%)
Query: 738 MDYLEETIGSLTRRKYV--------------LRKHADKYNRFQDLPPTPWK 774
+ Y E+T G + ++V +R+ A+ L K
Sbjct: 127 LSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK 177
>gnl|CDD|227042 COG4698, COG4698, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 197
Score = 29.7 bits (67), Expect = 6.6
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 1129 STMSEWRLVFWLTFIILAVTNLFYLVFGSAEIQPWNDPNPVVQKPP 1174
T++ W+ WL FI+LA+ L ++ + P +P +
Sbjct: 6 GTLNYWK---WLFFILLALNTLLAVLIALFVLSPREEPTHLEDASE 48
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 30.3 bits (69), Expect = 6.9
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 4/130 (3%)
Query: 80 LSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFE 139
LSA+ G+ I + G +A FG K + G L A+ + A Q+ + LI +RF
Sbjct: 32 LSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVAC--ALAQTIDQLIYMRFLH 89
Query: 140 GLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEI 199
GL +N L+ P E ++ SFV I + + + G+LL + W I
Sbjct: 90 GLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF--SWHAI 147
Query: 200 FYLFGILGVL 209
F++ + +L
Sbjct: 148 FWVLALAAIL 157
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 30.3 bits (69), Expect = 7.0
Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 7/125 (5%)
Query: 72 DEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW 131
+ ++L ++ LA++FG K T G+L AI +L F S
Sbjct: 255 NAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWL 314
Query: 132 LIALRFFEGLGEGTTFPALNTLLA------QWVPPTER-GKIGSFVFAGNQIGTVFSSFL 184
+ L G+G G +LA +W R G S +++G +
Sbjct: 315 FLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGAI 374
Query: 185 SGFLL 189
G LL
Sbjct: 375 VGLLL 379
>gnl|CDD|111933 pfam03092, BT1, BT1 family. Members of this family are
transmembrane proteins. Several are Leishmania putative
proteins that are thought to be pteridine transporters.
One such protein, previously termed (and is still
annotated as) ORFG, was shown to encode a biopterin
transport protein using null mutants, thus being
subsequently renamed BT1. The significant similarity of
ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative
transmembrane protein and another member of this family)
was previously noted. This family also contains five
putative Arabidopsis thaliana proteins of unknown
function. In addition, it also contains two predicted
prokaryotic proteins (from the cyanobacteria
Synechocystis and Synechococcus).
Length = 425
Score = 30.4 bits (69), Expect = 7.1
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 674 FVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722
++W +G +I S L+G LL + F + A+ +L V +
Sbjct: 128 WIWGCSAVGGIIGSVLSGPLLDTFKPQ--ISFLVTAALQLLTCVDAAVL 174
>gnl|CDD|233127 TIGR00788, fbt, folate/biopterin transporter. The Folate-Biopterin
Transporter (FBT) Family (TC 2.A.71)The only
functionally characterized members of the family are
from protozoa and include FT1, the major folate
transporter in Leishmania, and BT1, the Leishmania
biopterin/folate transporter. A related protein in
Trypanosoma brucei, ESAGIO, shows weak folate/biopterin
transport activity [Cell envelope, Other].
Length = 468
Score = 30.1 bits (68), Expect = 8.3
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 342 VTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILV---- 397
+ L + A SL + SP+ +L++ + G A G+IS L G L+
Sbjct: 127 IFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTL 186
Query: 398 PNNGVLSSLPFLLMWLTAIVAGWF 421
L + LL L V+
Sbjct: 187 TRILFLITAALLL--LQLFVSNLS 208
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 30.1 bits (68), Expect = 8.3
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 374 LMAIVNGIGAISGIISPYLIGILV------PNNGVLSSLPFLLMWLTAIVAGWFSDYLVS 427
L ++ + A+ ++ P LIG ++ + L LL+ L V YL S
Sbjct: 18 LAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGS 77
Query: 428 KNIFSVT 434
+ +
Sbjct: 78 RLGQKIV 84
>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and
metabolism].
Length = 395
Score = 29.9 bits (68), Expect = 8.4
Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 602 LAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAA 661
LA++FG + +L +L A ++ G L + G G N LL +
Sbjct: 70 LARRFGEERSLFLALLLIAAGILIRS---LGGLPLLFLGTLLAGAGIAVI----NVLLPS 122
Query: 662 WIPKTERGKVGAF--VWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVW 719
I + +VG +++ + ++ + L + W + +A+L ++W
Sbjct: 123 LIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIW 182
Query: 720 LF 721
L
Sbjct: 183 LP 184
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 30.1 bits (68), Expect = 8.5
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 600 GLLAQKFGGKHTLGFG--ILSTAIFTI-LTPMAAYMG---PVWLIVWRFFEGLGEGTTFP 653
G+L K+G + L I+S + F I L P A +G P+ L++ + +G G +
Sbjct: 78 GMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYT 137
Query: 654 AANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLL 693
A+ +A + P +RG +G+++ G I G V+ + + L+
Sbjct: 138 GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177
>gnl|CDD|236614 PRK09705, cynX, putative cyanate transporter; Provisional.
Length = 393
Score = 29.8 bits (67), Expect = 9.9
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 476 MGFFYPSLKVNALDLSPN--YAGTLMAIVNGIGAISGIISPYLIGIL--VPNSTMLEWRL 531
+G +P + ALD S AG L+A + GIG I ++P+ G+L + + +++W
Sbjct: 306 LGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAF 365
Query: 532 VFWISFGVIMIT 543
G+++IT
Sbjct: 366 HALCVVGLMIIT 377
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.455
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 63,546,894
Number of extensions: 6675081
Number of successful extensions: 11111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10725
Number of HSP's successfully gapped: 589
Length of query: 1188
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1080
Effective length of database: 6,147,370
Effective search space: 6639159600
Effective search space used: 6639159600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (28.7 bits)