RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4738
(1188 letters)
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 176 bits (449), Expect = 7e-48
Identities = 69/451 (15%), Positives = 132/451 (29%), Gaps = 67/451 (14%)
Query: 9 RYILGFMGFLAVANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRNHTNPDNE 68
R+ + F A Y +R +LA+ +V E
Sbjct: 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-----------------------------E 56
Query: 69 FDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA--AR 126
+ G LS Y G ++ + + L G++ A L F A
Sbjct: 57 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 116
Query: 127 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSG 186
S + L F G +G +P + W ERG I S + +G L
Sbjct: 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176
Query: 187 FLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARN 246
+ + + W Y+ +L + + + P S E +
Sbjct: 177 LGMAWFND-WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE 235
Query: 247 KIGHDW------------------GLFMISAD-------LPKYMKSVMKFSIAKNGVLSS 281
+ + P Y+K V F++ K+
Sbjct: 236 QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYF 295
Query: 282 LPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILV 341
L ++ GW SD + + T + + + ++ + +
Sbjct: 296 LYEYAGIPGTLLCGWMSDKVFRGN-RGATGVFFMTLVTIAT-----IVYWMNPAGNPTVD 349
Query: 342 VTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISG-IISPYLIGILVPN 399
+ V + + ++AL+L+P AGT G + G + + ++G V
Sbjct: 350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409
Query: 400 NGVLSSLPFLLMWLTAIVAGWFSDYLVSKNI 430
G F++M +I+A ++
Sbjct: 410 FG--WDGGFMVMIGGSILAVILLIVVMIGEK 438
Score = 117 bits (295), Expect = 9e-28
Identities = 45/348 (12%), Positives = 89/348 (25%), Gaps = 60/348 (17%)
Query: 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM 632
E + G L Y G ++ + + L G++ A + +
Sbjct: 56 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 115
Query: 633 --GPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
+ V F G +G +P + + W + ERG + + +G I L
Sbjct: 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTR 750
L + N+ W Y+ AIL + + P S +E +
Sbjct: 176 LLGMAWFND-WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA 234
Query: 751 RKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSW 810
+E+ + + +
Sbjct: 235 E----------------------QELTAKQI--------------------FMQYVLPNK 252
Query: 811 PVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSA--TSMGPAVGIILASYSG---- 864
+ + I V + I P Y V HF++ + I +
Sbjct: 253 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMS 312
Query: 865 -----CNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIV 907
N+ +FF + Y + + M ++
Sbjct: 313 DKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV----DMICMIVI 356
Score = 59.7 bits (145), Expect = 3e-09
Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 14/173 (8%)
Query: 401 GVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGC 460
L ++ GW SD + N T + + + ++
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGN-RGATGVFFMTLVTIAT-----IVYWMNPAG 344
Query: 461 DQILVVTLFTVGMAFMGFFYPSLKVNALDLSP-NYAGTLMAIVNGIGAISG-IISPYLIG 518
+ + + V + + ++AL+L+P AGT G + G + + ++G
Sbjct: 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404
Query: 519 ILVPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQ 571
V W F + G ++ + + + G+ + LL E +
Sbjct: 405 YTV---DFFGWDGGFMVMIGGSILAVILLIVVMIGEKR---RHEQLLQELVPR 451
Score = 53.9 bits (130), Expect = 2e-07
Identities = 29/201 (14%), Positives = 53/201 (26%), Gaps = 13/201 (6%)
Query: 967 PWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYF--------ASNGLLSALPFLFMWI 1018
+ + + + + I V + I P Y + L
Sbjct: 244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303
Query: 1019 FSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGCNKVLAVMFFAIGM 1078
+ G +SD + T + + A + + +G V + IG
Sbjct: 304 GTLLCGWMSDKVFRGNR-GATGVFFMTL----VTIATIVYWMNPAGNPTVDMICMIVIGF 358
Query: 1079 GFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIMTPNSTMSEWRLVF 1138
G A T G + G +A I T + + +
Sbjct: 359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 418
Query: 1139 WLTFIILAVTNLFYLVFGSAE 1159
+ ILAV L ++ G
Sbjct: 419 MIGGSILAVILLIVVMIGEKR 439
Score = 33.5 bits (77), Expect = 0.47
Identities = 48/365 (13%), Positives = 94/365 (25%), Gaps = 69/365 (18%)
Query: 416 IVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAF 475
+ G SD + +I + S ++ V LF G
Sbjct: 80 FIMGSVSDRSNPRVFLPAGLI---LAAAVMLFMGFVPWATSSIA---VMFVLLFLCGWFQ 133
Query: 476 MGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWI 535
+ P + S G ++++ N + G I P L + + + +W ++
Sbjct: 134 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM--AWFNDWHAALYM 191
Query: 536 SFGVIMITNVAYVFM--------------GSGKIQSWNEPRHLLPEESQQYEFDWDE--- 578
I + F K ++ +E +
Sbjct: 192 -PAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP 250
Query: 579 --TTQGLILGSFYWGYV-------------------------------IMHIPGGLLA-- 603
+ + + + + IPG LL
Sbjct: 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310
Query: 604 -----QKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQL 658
+ T F + I TI+ M P ++ G
Sbjct: 311 MSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH 370
Query: 659 LAAWIPKTERGKVGAFV-WAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFV 717
PK G F G + G+V +S++ G + W F + +IL +
Sbjct: 371 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVI 428
Query: 718 VWLFI 722
+ + +
Sbjct: 429 LLIVV 433
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.5 bits (180), Expect = 4e-13
Identities = 96/587 (16%), Positives = 173/587 (29%), Gaps = 168/587 (28%)
Query: 556 QSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFG 615
Q + +LPE ++ + D DE T P L+ KF LG+
Sbjct: 32 QLQEQFNKILPEPTEGFAAD-DEPTT----------------PAELVG-KF-----LGY- 67
Query: 616 ILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQL--LAAWIPKTERGKVG- 672
+ + + + V + FE + N + LAA + + +
Sbjct: 68 ---VSSLVEPSKVGQF-DQVLNLCLTEFE-----NCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 673 ------AFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFG--AVAILWF--VVWLFI 722
++ A I+ L + + +FG +F + L+
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 723 GYSEPGSNPFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDL----------PPTP 772
Y I + ET+ L R K + + ++ P
Sbjct: 179 TY-HVLVGDLI-----KFSAETLSELIRTTLDAEKV---FTQGLNILEWLENPSNTPDKD 229
Query: 773 WKEMAT---SWPVIALVITQVV--LISLFYLPPTPWKEMATSWP---------VIALVIT 818
+ + + S P+I + Q+ +++ L TP E+ + V A+ I
Sbjct: 230 Y--LLSIPISCPLIGV--IQLAHYVVTAKLLGFTP-GELRSYLKGATGHSQGLVTAVAIA 284
Query: 819 QVGHDWGLFTIAADLPKYFASVIHFSV----HSA---TSMGPAVGIILASYSGCNKVLAV 871
+ W F ++ A + F + + A TS+ P+ I+ S V +
Sbjct: 285 ETD-SWESFFVSVRK----AITVLFFIGVRCYEAYPNTSLPPS--ILEDSLENNEGVPSP 337
Query: 872 MFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDL------LH 925
M + + + L + ++VNG + V G + L L
Sbjct: 338 MLSISNLT-QEQVQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVSG-PPQSLYGLNLTLR 394
Query: 926 GKQARYHW-TNRAPYSFNFPLFKYVLRKHADKYNRFQDLP---P--TPWKEMATSWPVIA 979
+A +R P+S F NRF LP P + + P
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKF----------SNRF--LPVASPFHSHL--LV---PASD 437
Query: 980 LVITQVGHDWGLFTIAADL--PKYFASNG----LLSA--LPFLFMWIFSQ---------- 1021
L+ + + F A D+ P Y +G +LS + I
Sbjct: 438 LINKDLVKNNVSFN-AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 1022 --------------GAGCLSDFIVERQWFSMTLTRKIFATAASMGPA 1054
G G L+ + R I A + P
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNKDGTG-----VRVIVAGTLDINPD 538
Score = 55.1 bits (132), Expect = 1e-07
Identities = 50/314 (15%), Positives = 94/314 (29%), Gaps = 94/314 (29%)
Query: 868 VLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGK 927
VL + ++ I++L AA L+ + + + I+ + +
Sbjct: 83 VLNLCLTEFENCYLE----GNDIHAL------AAKLLQENDTTLVKTKELIKN--YITAR 130
Query: 928 QARYHWTNRAPYSFNFPLFKYVLRKHADKYNRF--QDLPPTPWKEMA----TSWPVIALV 981
++ S LF+ V +A F Q ++E+ T ++ +
Sbjct: 131 IMAKRPFDKKSNS---ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 982 ITQVG-HDWGLFTIAADLPKYFASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWF---S 1037
I L D K F + GL + + +W S
Sbjct: 188 IKFSAETLSELIRTTLDAEKVF-TQGL--------------------NIL---EWLENPS 223
Query: 1038 MTLTRKIFATAA-SMGPAVGII-LASYSGCNKVLAVMFFAIGMGFMGFYYPSIRINSLDL 1095
T + + S P +G+I LA Y V A L
Sbjct: 224 NTPDKDYLLSIPISC-PLIGVIQLAHYV----VTA--------------------KLLGF 258
Query: 1096 SPNYAATLMAIVNGL-GAVSGIFSAPLIGIMTPNSTMSEWRLVFWLTFIILAVTNLFYL- 1153
+P L + + G G G+ +A I + W + + A+T LF++
Sbjct: 259 TP---GELRSYLKGATGHSQGLVTAVAI------AETDSWES--FFVSVRKAITVLFFIG 307
Query: 1154 -----VFGSAEIQP 1162
+ + + P
Sbjct: 308 VRCYEAYPNTSLPP 321
Score = 47.7 bits (113), Expect = 3e-05
Identities = 102/595 (17%), Positives = 176/595 (29%), Gaps = 229/595 (38%)
Query: 14 FMGFLA----VANAYAMRGCLSLAITEMVVVHHKGPVKIDPNGCPGDLDSRN-HT---NP 65
F+G+++ + L+L +TE + L+ + H
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY---------------LEGNDIHALAAKL 108
Query: 66 DNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA 125
E D ++ + ++ P F K ++A+F A
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRP-------FDKKS-------NSALFR-----AV 149
Query: 126 RQSANWLIALRFFEGLGEGTT---FPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSS 182
+ L+A+ F G G+G T F L L T +G + S
Sbjct: 150 GEGNAQLVAI-F--G-GQGNTDDYFEELRDLYQ-----TYHVLVGDLI---KFSAETLSE 197
Query: 183 FLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGC 242
+ T D ++F L + W L +P++ P +K+YL
Sbjct: 198 LIR------TTLDAEKVFTQ-----GLNILEW--L--ENPSNTP-----DKDYLL----- 232
Query: 243 LARNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLV 302
SI + S P L+ + + Y+V
Sbjct: 233 -----------------------------SIP---I--SCP--LIGVIQ-----LAHYVV 251
Query: 303 SKDIFSVTV--IRKIFTTIASVGPASGVILAS-----------YAGCDQILVVTLFTVGM 349
+ + T +R + G + G++ A + + + V LF
Sbjct: 252 TAKLLGFTPGELRSYLK--GATGHSQGLVTAVAIAETDSWESFFVSVRKAITV-LF---- 304
Query: 350 AFMGF----FYPSLKVNALDLS---PNYAG--TLMAIVNGI--GAISGIIS---PYL--- 392
F+G YP+ + L N G + M ++ + + ++ +L
Sbjct: 305 -FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 393 --IGI-LV--PNNGVLS----SLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKI---- 439
+ I LV N V+S SL L + L A S S+ FS RK+
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP--SGLDQSRIPFSE---RKLKFSN 418
Query: 440 -FTTIAS------VGPASGVILA-------SYAGCD-QILV---------------VTLF 469
F +AS + PAS +I S+ D QI V ++
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 470 TVGMAFMGFFYPSLKVN---ALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILV 521
V L V + + G G SG +G+L
Sbjct: 479 IVDCII------RLPVKWETTTQFKATH-----ILDFGPGGASG------LGVLT 516
Score = 45.8 bits (108), Expect = 1e-04
Identities = 123/737 (16%), Positives = 203/737 (27%), Gaps = 281/737 (38%)
Query: 222 PAS-HPYISQREKEYLAD----TIGCLARNKIGHDWGLFMISADLPKYMKSVMKFSIAKN 276
P + SQ ++++ T G A ++ L K++ V + +
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG------KFLGYVSS-LVEPS 75
Query: 277 GVLSSLPFLLMWLTAIVAGWF-SDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAG 335
V L + LT F + YL DI ++ K+ + + ++ +Y
Sbjct: 76 KVGQFDQVLNLCLTE-----FENCYLEGNDIHALAA--KLLQENDTTLVKTKELIKNY-- 126
Query: 336 CDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAG--TLMAIVNGIGAISG------- 386
T + +AL G L+AI G G
Sbjct: 127 ---------IT-ARIMAKRPFDKKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 387 --IISPYLIGILVPNNG-VLSSLPF--------------LLMWLTAIVAGWFSDYLVSKN 429
L+G L+ + LS L +L WL DYL+
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL--- 232
Query: 430 IFSVTVIRKIFTTIASVGPASGVI-LASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNAL 488
S+ + S P GVI LA Y VVT L
Sbjct: 233 --SIPI---------SC-PLIGVIQLAHY-------VVTA-----------------KLL 256
Query: 489 DLSPNYAGTLMAIVNGI-GAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIMITNVAY 547
+P G L + + G G G+++ I + W SF V + +
Sbjct: 257 GFTP---GELRSYLKGATGHSQGLVTAVAI------AETDSWE-----SFFVSVRKAITV 302
Query: 548 VF-MGSGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKF 606
+F +G +++ P LP + + +E P
Sbjct: 303 LFFIGVRCYEAY--PNTSLPPSILEDSLENNEGV-----------------P-------- 335
Query: 607 GGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWI--P 664
+PM + V + + PA Q+ + +
Sbjct: 336 -------------------SPMLSISNLTQEQVQDYVNKT--NSHLPAGKQVEISLVNGA 374
Query: 665 KTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY 724
K V +G SL GL L L P
Sbjct: 375 K-------NLVVSG------PPQSLYGLNLTLRKAKAP---------------------- 399
Query: 725 SEPGSN----PFISQKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLP---P--TPWKE 775
G + PF S+ RK NRF LP P +
Sbjct: 400 --SGLDQSRIPF-SE---------------RKLKF------SNRF--LPVASPFHSHL-- 431
Query: 776 MATSWPVIALVITQVVLISLFYLPPTPWKEMATSWPVIALVITQVGHDWGLFT--IAADL 833
+ P L+ +V ++ + K++ PV T G D + + I+ +
Sbjct: 432 LV---PASDLINKDLVKNNVSFNA----KDIQI--PVYD---TFDGSDLRVLSGSISERI 479
Query: 834 -------PKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVMFFAI--GMGFMGFY 884
P + + F GP G L V+ G G
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGP----------GGASGLGVLTHRNKDGTG----- 524
Query: 885 YPSIRI---NSLDLSPN 898
+R+ +LD++P+
Sbjct: 525 ---VRVIVAGTLDINPD 538
Score = 29.6 bits (66), Expect = 9.0
Identities = 53/302 (17%), Positives = 96/302 (31%), Gaps = 93/302 (30%)
Query: 259 ADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGW-----FSDYLVSKDIFSVTVIR 313
AD + K FSI ++ + P L G +S + +
Sbjct: 1649 AD--NHFKDTYGFSILD--IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 314 KIFTTIASVGPASGVILASYAGCDQILVVT------LFTVGMAFMGFFYPSLKVNALDLS 367
KIF I ++ + +L T L + A + LK L +
Sbjct: 1705 KIFKEINE--HSTSYT---FRSEKGLLSATQFTQPALTLMEKA----AFEDLKSKGLIPA 1755
Query: 368 PNY-AG------TLMAIVNGIGAISGIISP----YLI---GIL----VPNNGVLSSLPFL 409
AG A+ +++ ++S ++ G+ VP + + S +
Sbjct: 1756 DATFAGHSLGEYA--ALA----SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 410 LMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVIL--ASYAGCDQILVVT 467
+ AI G V+ FS ++ + + VG +G ++ +Y +Q V
Sbjct: 1810 I----AINPG-----RVAA-SFSQEALQYV---VERVGKRTGWLVEIVNYNVENQQYVAA 1856
Query: 468 LFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGI-ISPYLIGILVPNSTM 526
G + ALD T+ ++N I + I I + S
Sbjct: 1857 ----G-----------DLRALD-------TVTNVLNFIK-LQKIDIIE------LQKSLS 1887
Query: 527 LE 528
LE
Sbjct: 1888 LE 1889
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 59.2 bits (144), Expect = 3e-09
Identities = 55/355 (15%), Positives = 109/355 (30%), Gaps = 32/355 (9%)
Query: 78 LILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRF 137
++ A+ Y + + G ++ + G + + G+ + TL+ S LIA
Sbjct: 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASA 96
Query: 138 FEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWP 197
+G+G G TL T+ S + G + + + + G L + W
Sbjct: 97 MQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN--WR 154
Query: 198 EIFYLFGILGVL-WFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARNK--IGHDW-- 252
+ +L F ++ P + P + L + L N +
Sbjct: 155 ACYLFLLVLCAGVTFSMARWM----PETRP--VDAPRTRLLTSYKTLFGNSGFNCYLLML 208
Query: 253 -----GLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIF 307
G+ A M +V+ S +L F+L A WF+ +
Sbjct: 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSIL----FILPIPAAFFGAWFAGRPNKR--- 261
Query: 308 SVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLS 367
+ + + I + + ++ + G +P A++
Sbjct: 262 -FSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPF 320
Query: 368 PNYAGTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFS 422
P AGT A+V G+ I + L +L L+ +
Sbjct: 321 PFLAGTAGALVGGLQNIGSGVLASLSAMLPQT----GQGSLGLLMTLMGLLIVLC 371
Score = 37.2 bits (87), Expect = 0.028
Identities = 28/153 (18%), Positives = 64/153 (41%), Gaps = 7/153 (4%)
Query: 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM 632
+ + E ++G++ Y + + G ++ + G + + G+ +IF + T +A
Sbjct: 29 DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM---SIFMLATLVAVTT 85
Query: 633 GPV-WLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTG 691
+ LI +G+G G A L +T+ + + GI++ +++ + G
Sbjct: 86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG 145
Query: 692 LLLKLTNNYWPVVFY-LFGAVAILWFVVWLFIG 723
LL + N W + L A + F + ++
Sbjct: 146 LLDTMWN--WRACYLFLLVLCAGVTFSMARWMP 176
Score = 33.8 bits (78), Expect = 0.38
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 4/122 (3%)
Query: 405 SLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGCDQIL 464
S+ F+L A WF+ + + + + I + +
Sbjct: 238 SILFILPIPAAFFGAWFAGRPNKR----FSTLMWQSVICCLLAGLLMWIPDWFGVMNVWT 293
Query: 465 VVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPNS 524
++ + G +P A++ P AGT A+V G+ I + L +L
Sbjct: 294 LLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353
Query: 525 TM 526
Sbjct: 354 QG 355
Score = 31.8 bits (73), Expect = 1.3
Identities = 32/263 (12%), Positives = 68/263 (25%), Gaps = 39/263 (14%)
Query: 491 SPNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWI--SFGVIMITNVAYV 548
+++N +S +++P + G+L TM WR + + ++A
Sbjct: 118 ERTQLRHANSLLNMGILVSPLLAPLIGGLLD---TMWNWRACYLFLLVLCAGVTFSMARW 174
Query: 549 F-----MGSGKIQSWNEPRHLLPEES-------------------------QQYEFDWDE 578
+ + + + + L
Sbjct: 175 MPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSS 234
Query: 579 TTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLI 638
T ++ G ++F A + P + VW +
Sbjct: 235 MTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTL 294
Query: 639 VW-RFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLT 697
+ G G FP A P G GA V +G+ + +SL+ +L
Sbjct: 295 LVPAALFFFGAGMLFPLATSGAMEPFPF-LAGTAGALVGGLQNIGSGVLASLSAML--PQ 351
Query: 698 NNYWPVVFYLFGAVAILWFVVWL 720
+ + ++
Sbjct: 352 TGQGSLGLLMTLMGLLIVLCWLP 374
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 49.9 bits (119), Expect = 3e-06
Identities = 48/324 (14%), Positives = 96/324 (29%), Gaps = 37/324 (11%)
Query: 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLL-TPFAA 125
F GLI SAFY+GY I+ IP G+L +K K + G+ A+ L P A
Sbjct: 54 QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE 113
Query: 126 RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 185
+ + F G G A N + P + + N G + +
Sbjct: 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173
Query: 186 GFLL---------------------KYTDGDWPEIFYLFGILGVLWFVAWCFLCYND--P 222
L+ Y + + I+ + + +
Sbjct: 174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA 233
Query: 223 ASHPYISQREKEYLADTIGCLARNK--IGHDWGLF-------MISADLPKYMKS-VMKFS 272
S ++ + ++ LAR + F + L +Y + +
Sbjct: 234 LQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT 293
Query: 273 IAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKD---IFSVTVIRKIFTTIASVGPASGVI 329
+ + ++ W +++ + + + G +
Sbjct: 294 AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA 353
Query: 330 LASYAGCDQILVVTLFTVGMAFMG 353
L + I T+F++G+ +G
Sbjct: 354 LTLCSAFMSIQYPTIFSLGIKNLG 377
Score = 39.5 bits (92), Expect = 0.006
Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 571 QYEFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAA 630
Q F GLI +FY+GY I+ IP G+L +K K + G+ A+ L AA
Sbjct: 53 QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112
Query: 631 YMGPVWLIVWRFFEGLGEGTTF--PAANQLLAAWIPKTERGK----VGAFVWAGIIMGTV 684
+ L + F + G AAN + P++ F G I+ V
Sbjct: 113 EIMNYTLFLVGLF-IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV 171
Query: 685 ISSSL 689
SL
Sbjct: 172 FGQSL 176
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 40.3 bits (94), Expect = 0.004
Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 5/128 (3%)
Query: 95 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLL 154
L+ + GGK+ L ++ + + FA SA ++ L+ +
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFKYI 337
Query: 155 AQWVPPTERGKIGSFVFA-GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVA 213
I F Q+ +F S L+G + Y + + + G++ + + +
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM--YESIGFQGAYLVLGLVALGFTLI 395
Query: 214 WCFLCYND 221
F
Sbjct: 396 SVFTLSGP 403
Score = 36.1 bits (83), Expect = 0.063
Identities = 42/366 (11%), Positives = 98/366 (26%), Gaps = 23/366 (6%)
Query: 77 GLILSAFYWGYVIMHIPGGLLAQKFGGKHTL--GFGILSTAIFTLLTPFAARQSANWLIA 134
G+I +A ++ GLL+ K G + L + ++
Sbjct: 46 GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105
Query: 135 LRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF--VFAGNQIGTVFSSFLSGFLLKYT 192
G+ G F A + ++ R F +G + + G +
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN 165
Query: 193 DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLARNK----- 247
+ + ++ + + + + L R
Sbjct: 166 NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFL 225
Query: 248 ----IGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVS 303
IG + + S V + + L +F+ +++
Sbjct: 226 SLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYV-TTMGELLNASIMFFAPLIIN 284
Query: 304 KDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNA 363
+ K +A + +I +S+A +V+ K
Sbjct: 285 R--IGG----KNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338
Query: 364 LDLSPNYAGTLMAIVNGIGA-ISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFS 422
++ T+ + ++ I L G + + G +L++ L A+ S
Sbjct: 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--QGAYLVLGLVALGFTLIS 396
Query: 423 DYLVSK 428
+ +S
Sbjct: 397 VFTLSG 402
Score = 34.9 bits (80), Expect = 0.14
Identities = 48/389 (12%), Positives = 118/389 (30%), Gaps = 31/389 (7%)
Query: 252 WGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTV 311
G + P ++ + S + G++ + L L + G SD L +
Sbjct: 23 MGAYFPF--FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR------- 73
Query: 312 IRKIFTTIASVGPASGVILASYAGCD-QILVVTLFTVGMAFMGFFYPSLKVNALDLSPNY 370
+ + I + G Q ++ VG ++GF + +
Sbjct: 74 -KYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV 132
Query: 371 AGTL---MAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVS 427
+ G + + ++GI+ + + F L A++ + +
Sbjct: 133 SRRSNFEFGRARMFGCVGWALGASIVGIMF---TINNQFVFWLGSGCALILAVLLFFAKT 189
Query: 428 KNIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNA 487
S TV + ++ + L ++ ++L+ +G++ + N
Sbjct: 190 DAPSSATVANAVGANHSAFSLKLALELFRQP---KLWFLSLYVIGVSCTYDVFDQQFANF 246
Query: 488 LDL---SPNYAGTLMAIVNGIGAISGII----SPYLIGILVPNSTMLEWRLVFWISFGVI 540
+ + V +G + +P +I + + +L + +
Sbjct: 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306
Query: 541 MITNVAYVFMGSGKIQSWNEPRHLLPEE---SQQYEFDWDETTQGLILGSFY-WGYVIMH 596
A + + + P L+ + Q+E + T + F + M
Sbjct: 307 SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366
Query: 597 IPGGLLAQKFGGKHTLGFGILSTAIFTIL 625
+ G + + G + L FT++
Sbjct: 367 VLAGNMYESIGFQGAYLVLGLVALGFTLI 395
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.011
Identities = 73/512 (14%), Positives = 130/512 (25%), Gaps = 169/512 (33%)
Query: 408 FLLMWLTAIVAGWFSDYLVSKN-----IFSVTVIRK----IFTTIASVGPASGVILASYA 458
L W L+SK F V+R + + I + ++ Y
Sbjct: 65 LRLFWT-----------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 459 GCDQILVVTLFTVGMAFMGFFYP------SLKVNALDLSPNYAGTL--MAIVNGIG---- 506
L+ F + L+ L+L P + + G G
Sbjct: 114 EQ----RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSGKTWV 166
Query: 507 AISGIISPYLIGILVPNSTMLEWRLVFWISFG--------VIMITNVAYVFMGSGKIQSW 558
A+ + Y + + +FW++ + M+ + Y + +S
Sbjct: 167 ALD-VCLSYKVQCKMDFK-------IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 559 NEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIMHIPGGLL----------AQKFGG 608
+ L S Q E + L+ Y LL F
Sbjct: 219 HSSNIKLRIHSIQAEL------RRLLKSKPY--------ENCLLVLLNVQNAKAWNAFNL 264
Query: 609 K-HTLGFGILST---AIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIP 664
L L+T + L+ + + T LL ++
Sbjct: 265 SCKIL----LTTRFKQVTDFLSAATTTHISL--------DHHSMTLTPDEVKSLLLKYL- 311
Query: 665 KTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGY 724
+ LT +L+ + W +
Sbjct: 312 -------------DCRPQDLPREVLTTNPRRLS---------IIAESIRDGLATWDN--W 347
Query: 725 SEPGSNPF--ISQKEMDYLEETIGSLTRRKY----VLRKHADKYNRFQDLPP----TPWK 774
+ I + ++ LE + R+ + V A +P W
Sbjct: 348 KHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVFPPSA-------HIPTILLSLIWF 397
Query: 775 EMATSWPVIALVITQVVLISLFYLPPTPWKEMATSWPVIALVITQ------------VGH 822
++ S + +V+ ++ SL P KE S P I L + V H
Sbjct: 398 DVIKS--DVMVVVNKLHKYSLVEKQP---KESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 823 --------DWGLFTIAADLPKYFASVIHFSVH 846
L D +YF S H H
Sbjct: 453 YNIPKTFDSDDLIPPYLD--QYFYS--HIGHH 480
Score = 36.0 bits (82), Expect = 0.093
Identities = 49/328 (14%), Positives = 95/328 (28%), Gaps = 109/328 (33%)
Query: 731 PFISQKEMDYL--EETIGSLTRRKY--VLRKHADKYNRFQD--LPPT-PWKEMATSWPVI 783
+S++E+D++ + S T R + +L K + +F + L + + +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF--LMSPI--- 98
Query: 784 ALVITQVVLISLFYLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVI-- 841
Q +++ Y I Q L+ KY S +
Sbjct: 99 KTEQRQPSMMTRMY-------------------IEQRDR---LYNDNQVFAKYNVSRLQP 136
Query: 842 HFSVHSA-TSMGPAVGIILASYSGCNK-VLAVMF-----FAIGMGFMGFYYPSIR----- 889
+ + A + PA +++ G K +A+ M F ++ +++
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSP 195
Query: 890 ------INSL--DLSPNYAATLMAIVNGVQIFVDDGIRTRDLLHGKQARYH--------- 932
+ L + PN+ + N R LL K Y
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNV 253
Query: 933 WTNRAPYSFNF-------------------PLFKYVLRKHAD-------------KY--N 958
+A +FN ++ H KY
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 959 RFQDLPPTPWKEMATSWPVIALVITQVG 986
R QDLP E+ T+ P ++ +
Sbjct: 314 RPQDLPR----EVLTTNP---RRLSIIA 334
Score = 36.0 bits (82), Expect = 0.097
Identities = 59/416 (14%), Positives = 114/416 (27%), Gaps = 131/416 (31%)
Query: 260 DLPKYMKSVMKFS----IAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSK-----DIFSVT 310
D+ KS++ I + S L W L+SK F
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-----------LLSKQEEMVQKFVEE 85
Query: 311 VIRK----IFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYP------SLK 360
V+R + + I + ++ Y L+ F + L+
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQ----RDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 361 VNALDLSPNYAGTL--MAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTA--- 415
L+L P + + G G + + + V + F + WL
Sbjct: 142 QALLELRPAKNVLIDGVL---GSGKTW------VALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 416 ----------------IVAGWFSDYLVSKNIFSVTV-----IRKIFTTIASVGPASGVIL 454
I W S S NI +R++ + ++L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS--KPYENCLLVL 250
Query: 455 ----------ASYAGCDQILVVTLFTVGMAFMGF---FYPSLKVNALDLSPNYAGTLMAI 501
A C +IL+ T F F+ + SL +++ L+P+ +L+
Sbjct: 251 LNVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 502 VNGIG-------AISGIISPYLIGILVPNSTML-EW--RLVFWISFGVIMITNVAYVFMG 551
++ +P + I+ + + + W +T + +
Sbjct: 310 YLDCRPQDLPREVLT--TNPRRLSII---AESIRDGLATWDNWKHVNCDKLTTIIESSL- 363
Query: 552 SGKIQSWNEPRHLLPEESQQYEFDWDETTQGLILGSFYWGYVIM----HIPGGLLA 603
L P E ++ + + HIP LL+
Sbjct: 364 ----------NVLEPAEYRKM----------------FDRLSVFPPSAHIPTILLS 393
Score = 31.7 bits (71), Expect = 2.0
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 25/98 (25%)
Query: 1085 YPSIRINSLDLSPNYAATL--MAIVNGLG----AVSGIFSAPLIGIMTPNSTMSEWRLVF 1138
Y +R L+L P + + G G A+ S + M +F
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVL---GSGKTWVALDVCLSYKVQCKM-DFK-------IF 185
Query: 1139 WLTF--------IILAVTNLFYLVFGSAEIQPWNDPNP 1168
WL ++ + L Y + + + + N
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Score = 31.4 bits (70), Expect = 2.3
Identities = 27/162 (16%), Positives = 47/162 (29%), Gaps = 54/162 (33%)
Query: 908 NGVQIFVDDGIRTR-DLLHGKQARYHWTNRAP--------------YSFNFPLFKY-VLR 951
VQ FV++ +R L + R P Y+ N KY V R
Sbjct: 77 EMVQKFVEEVLRINYKFL---MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 952 KHADKYNRFQD----LPPTPWKEMATSWPVIALVITQVGHDWGLF-----TIAADLPKYF 1002
Y + + L P ++I G+ +A D+
Sbjct: 134 LQ--PYLKLRQALLELRPAKN-----------VLI----D--GVLGSGKTWVALDV---C 171
Query: 1003 ASNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKI 1044
S + + F W+ + + ++E L +I
Sbjct: 172 LSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQ---KLLYQI 209
Score = 29.4 bits (65), Expect = 9.4
Identities = 19/128 (14%), Positives = 35/128 (27%), Gaps = 39/128 (30%)
Query: 945 LFKYVLRKHADKYNRFQD--LPPT-PWKEMATSW------PVIALVITQVGHDWGLFTIA 995
LF +L K + +F + L + + + P + + D L+
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRD-RLYNDN 123
Query: 996 ADLPKYFAS---------NGLLSALPFLFMWIFSQG-AGC---------LSDFIVERQ-- 1034
KY S LL P + G G + V+ +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAK--NVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 1035 ----WFSM 1038
W ++
Sbjct: 182 FKIFWLNL 189
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 34.7 bits (80), Expect = 0.20
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 107 LGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 166
L F ++ AI L + + S WL+ LGE P ++ + P ++
Sbjct: 366 LSFLLM--AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQM 423
Query: 167 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 209
S F + +G+ ++ L Y F FG+ V+
Sbjct: 424 MSMWFLSSSVGSALNAQLVTL---YNAKSEVAYFSYFGLGSVV 463
Score = 31.2 bits (71), Expect = 2.2
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 612 LGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKV 671
L F ++ AI L + + P+WL+ LGE P + PK
Sbjct: 366 LSFLLM--AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK----AF 419
Query: 672 GAFVWAGIIMGTVISSSLTGLLLKLTNNY-WPVVFYLFGAVAILWFVVWLFI 722
+ + + + + + S+L L+ L N F FG +++ +V +F+
Sbjct: 420 NSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFL 471
Score = 29.7 bits (67), Expect = 6.6
Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 7/151 (4%)
Query: 574 FDWDETTQGLILGSFYWGYVIMHIPGGLLAQKF-GGKHTLGFGILSTAIFTILTPMAAYM 632
T I+ + + GG +A + G + + +G + + I+ +A
Sbjct: 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV--LALPF 106
Query: 633 GPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVW--AGIIMGTVISSSLT 690
G L +G G P + L+ + +R + F GI +G I+ +
Sbjct: 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLF 721
G + + V F L + +V+ F
Sbjct: 167 GAAQEAAG--YHVAFSLAAIGMFIGLLVYYF 195
Score = 29.3 bits (66), Expect = 9.9
Identities = 24/153 (15%), Positives = 52/153 (33%), Gaps = 11/153 (7%)
Query: 65 PDNEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKF-GGKHTLGFGILSTAI--FTLLT 121
+ T I++ + + GG +A + G + + +G + + L
Sbjct: 45 STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL 104
Query: 122 PFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF--AGNQIGTV 179
PF A + ++ +G G P ++TL+ +R + F G +G
Sbjct: 105 PFGA---SALFGSIILI-IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF 160
Query: 180 FSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFV 212
+ + G + + F L I + +
Sbjct: 161 IAPLIVGAAQEAA--GYHVAFSLAAIGMFIGLL 191
>2xut_A Proton/peptide symporter family protein; transport protein,
membrane protein, major facilitator super transporter;
3.62A {Shewanella oneidensis}
Length = 524
Score = 33.1 bits (76), Expect = 0.69
Identities = 19/121 (15%), Positives = 34/121 (28%), Gaps = 2/121 (1%)
Query: 99 QKFG-GKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQW 157
+K G G G + L+ + S W I GE
Sbjct: 374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQ 433
Query: 158 VPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYLFGILGVLWFVAWCF 216
P +G I SF +G ++ + + T + + + +F +
Sbjct: 434 APKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAI 493
Query: 217 L 217
L
Sbjct: 494 L 494
Score = 31.5 bits (72), Expect = 1.7
Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 1/120 (0%)
Query: 604 QKFG-GKHTLGFGILSTAIFTILTPMAAYMGPVWLIVWRFFEGLGEGTTFPAANQLLAAW 662
+K G G G + ++ + + W I+ GE + +
Sbjct: 374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQ 433
Query: 663 IPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFI 722
PK +G + +F + +G + + T V + ++F I
Sbjct: 434 APKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAI 493
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 32.8 bits (75), Expect = 0.80
Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 42/108 (38%)
Query: 510 GIISPYLIGILVPNSTMLEWRLVF--WI-SFGVIMITNVAYVFMGSGKIQSWNEPRHLLP 566
P++I +VP STM W F W I +MG+ + R +
Sbjct: 284 RQNGPHII--VVPLSTMPAWLDTFEKWAPDLNCI-------CYMGNQ------KSRDTI- 327
Query: 567 EESQQYEFDWDETTQGL--------------------ILGSFYWGYVI 594
++YEF + +G LGS W ++
Sbjct: 328 ---REYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMA 372
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.4
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 21/41 (51%)
Query: 1091 NSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIMTPNSTM 1131
SL L YA SAP + I +TM
Sbjct: 27 ASLKL---YADD---------------SAPALAI---KATM 46
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 31.2 bits (70), Expect = 2.2
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 16/77 (20%)
Query: 889 RINSLDLSPNYAATLMAIVNGVQIFVDD--GIRTRDLLHGKQARYHWTNRAPYSFNFPLF 946
+ N+L+L + A +A++ I D G+ + Q L
Sbjct: 315 KFNALELDDSDLAIFIAVI----ILSGDRPGLLNVKPIEDIQDNLLQA----------LE 360
Query: 947 KYVLRKHADKYNRFQDL 963
+ H + F L
Sbjct: 361 LQLKLNHPESSQLFAKL 377
>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}
Length = 291
Score = 29.9 bits (68), Expect = 5.0
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 985 VGHDWGL---FTIAADLPKYFASNGLLSALPFLFMW 1017
VGHD G +A D P LL P M+
Sbjct: 101 VGHDRGARVAHRLALDHPHRVKKLALLDIAPTHKMY 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.455
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,131,676
Number of extensions: 1219312
Number of successful extensions: 2829
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2773
Number of HSP's successfully gapped: 103
Length of query: 1188
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1084
Effective length of database: 3,798,009
Effective search space: 4117041756
Effective search space used: 4117041756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.5 bits)