RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4738
(1188 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 79.0 bits (193), Expect = 1e-15
Identities = 62/390 (15%), Positives = 117/390 (30%), Gaps = 34/390 (8%)
Query: 68 EFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF--AA 125
E + G LS Y G ++ + + L G++ A L F A
Sbjct: 53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 112
Query: 126 RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 185
S + L F G +G +P + W ERG I S + +G L
Sbjct: 113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 172
Query: 186 GFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCLAR 245
+ + + ++ ++ A+ + + + K D A
Sbjct: 173 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE 232
Query: 246 NKIG------------------------HDWGLFMISADLPKYMKSVMKFSIAKNGVLSS 281
++ + I P Y+K V F++ K+
Sbjct: 233 QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYF 292
Query: 282 LPFLLMWLTAIVAGWFSDYLVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILV 341
L ++ GW SD + + + V + V A+ V + AG + +
Sbjct: 293 LYEYAGIPGTLLCGWMSDKVFRGNRGATGVF-----FMTLVTIATIVYWMNPAGNPTVDM 347
Query: 342 VTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISG-IISPYLIGILVPNN 400
+ + +G G AGT G + G + + ++G V
Sbjct: 348 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 407
Query: 401 GVLSSLPFLLMWLTAIVAGWFSDYLVSKNI 430
G F++M +I+A ++
Sbjct: 408 G--WDGGFMVMIGGSILAVILLIVVMIGEK 435
Score = 67.8 bits (164), Expect = 3e-12
Identities = 47/344 (13%), Positives = 86/344 (25%), Gaps = 7/344 (2%)
Query: 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPM--AA 630
E + G L Y G ++ + + L G++ A + A
Sbjct: 53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 112
Query: 631 YMGPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLT 690
+ V F G +G +P + + W + ERG + + +G I L
Sbjct: 113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 172
Query: 691 GLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTR 750
L + N++ Y+ AIL + + P S +E +
Sbjct: 173 LLGMAWFNDWHA-ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA 231
Query: 751 RKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSW 810
+ + K Q + P V ++ +L
Sbjct: 232 EQ----ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS 287
Query: 811 PVIALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLA 870
+ G L + + V T + A + + +G V
Sbjct: 288 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 347
Query: 871 VMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGVQIFV 914
+ IG G A T
Sbjct: 348 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 391
Score = 38.1 bits (87), Expect = 0.007
Identities = 35/326 (10%), Positives = 82/326 (25%), Gaps = 17/326 (5%)
Query: 401 GVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAGC 460
G S + + + G SD + +I +A+ +
Sbjct: 62 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI------LAAAVMLFMGFVPWATSS 115
Query: 461 DQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGIL 520
++ V LF G + P + S G ++++ N + G I P L +
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175
Query: 521 VPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDWDETT 580
+ L +++ + + + + Y ++
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235
Query: 581 QGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMGPVWLIVW 640
+ Y +L K + + + IL Y+ V
Sbjct: 236 TAKQIFMQY-----------VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 284
Query: 641 RFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGLLLKLTNNY 700
+ L + + M V +++ + N
Sbjct: 285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 344
Query: 701 WPVVFYLFGAVAILWFVVWLFIGYSE 726
++ + I V+ + + E
Sbjct: 345 VDMICMIVIGFLIYGPVMLIGLHALE 370
Score = 28.1 bits (61), Expect = 8.3
Identities = 23/169 (13%), Positives = 42/169 (24%), Gaps = 6/169 (3%)
Query: 1006 GLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYSGC 1065
G + + G +SD R + L A+ + +
Sbjct: 62 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL------ILAAAVMLFMGFVPWATSS 115
Query: 1066 NKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLGAVSGIFSAPLIGIM 1125
V+ V+ F G + P R S ++++ N V G L +
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175
Query: 1126 TPNSTMSEWRLVFWLTFIILAVTNLFYLVFGSAEIQPWNDPNPVVQKPP 1174
L IL F ++ + + P
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYP 224
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 47.1 bits (110), Expect = 1e-05
Identities = 35/369 (9%), Positives = 92/369 (24%), Gaps = 9/369 (2%)
Query: 67 NEFDWDEKTQGLILSAFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR 126
+ + G+I +A ++ GLL+ K G + L + I +
Sbjct: 36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95
Query: 127 QSANW---LIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSF 183
L+ + A + R
Sbjct: 96 GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA 155
Query: 184 LSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQREKEYLADTIGCL 243
++ + + L + + + A+ + +
Sbjct: 156 SIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALE 215
Query: 244 ---ARNKIGHDWGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDY 300
+ +S + + F + + ++T + +
Sbjct: 216 LFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASI 275
Query: 301 LVSKDIFSVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLK 360
+ + + K +A + +I +S+A +V+ K
Sbjct: 276 MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335
Query: 361 VNALDLSPNYAGTLMAIVNGIG-AISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAG 419
++ T+ + ++ I L G + + G +L++ L A+
Sbjct: 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--QGAYLVLGLVALGFT 393
Query: 420 WFSDYLVSK 428
S + +S
Sbjct: 394 LISVFTLSG 402
Score = 45.1 bits (105), Expect = 4e-05
Identities = 30/388 (7%), Positives = 97/388 (25%), Gaps = 7/388 (1%)
Query: 340 LVVTLFTVGMAFMGFFYPSLKVNALDLSPNYAGTLMAIVNGIGAISGIISPYLIGILVPN 399
L + M F+P + +S + G + A ++ + + L L
Sbjct: 14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR 73
Query: 400 NGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIFSVTVIRKIFTTIASVGPASGVILASYAG 459
+L + +L+ F L + V + G +
Sbjct: 74 KYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS 133
Query: 460 CDQILVVTLFTVGMAFMGFFYPSL---KVNALDLSPNYAGTLMAIVNGIGAISGIISPYL 516
+ S+ + + G+ A++ +
Sbjct: 134 RRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS 193
Query: 517 IGILVPNSTMLEWRLVFWISFGVIMITNVAYVFMGSGKIQSWNEPRHLLPEESQQYEFDW 576
+ ++ + + ++ + + + F
Sbjct: 194 SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFAT 253
Query: 577 DETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYMG-PV 635
E + G ++ +L+ I ++ +++ +
Sbjct: 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL 313
Query: 636 WLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWA-GIIMGTVISSSLTGLLL 694
+++ + + + + + + + + S L G +
Sbjct: 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373
Query: 695 KLTNNYWPVVFYLFGAVAILWFVVWLFI 722
+ + + + G VA+ + ++ +F
Sbjct: 374 ESIG--FQGAYLVLGLVALGFTLISVFT 399
Score = 41.7 bits (96), Expect = 4e-04
Identities = 31/338 (9%), Positives = 84/338 (24%), Gaps = 18/338 (5%)
Query: 573 EFDWDETTQGLILGSFYWGYVIMHIPGGLLAQKFGGKHTLGFGILSTAIFTILTPMAAYM 632
++ G+I + ++ GLL+ K G + L + I + + +
Sbjct: 37 INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96
Query: 633 GPVWLIVWRFFEGLGEGTTFPAANQLLAAWIPKTERGKVGAFVWAGIIMGTVISSSLTGL 692
+ + G F A + + F + M + +L
Sbjct: 97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS 156
Query: 693 LLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSLTRRK 752
++ + + G+ L V LF ++ S+
Sbjct: 157 IVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA------------------TVA 198
Query: 753 YVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLISLFYLPPTPWKEMATSWPV 812
+ + ++ L ++ + V + +
Sbjct: 199 NAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGT 258
Query: 813 IALVITQVGHDWGLFTIAADLPKYFASVIHFSVHSATSMGPAVGIILASYSGCNKVLAVM 872
+ +I P + + +V II +S++ + ++
Sbjct: 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVIL 318
Query: 873 FFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGV 910
+ + ++AT+ +
Sbjct: 319 KTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF 356
Score = 30.1 bits (66), Expect = 1.7
Identities = 26/290 (8%), Positives = 78/290 (26%), Gaps = 7/290 (2%)
Query: 252 WGLFMISADLPKYMKSVMKFSIAKNGVLSSLPFLLMWLTAIVAGWFSDYLVSKDIFSVTV 311
+ + P ++ + S + G++ + L L + G SD L +
Sbjct: 21 FIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL---- 76
Query: 312 IRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLSPNYA 371
++ + + + + Q ++ VG ++GF + + +
Sbjct: 77 ---LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS 133
Query: 372 GTLMAIVNGIGAISGIISPYLIGILVPNNGVLSSLPFLLMWLTAIVAGWFSDYLVSKNIF 431
+ I+ + + F L A++ + +
Sbjct: 134 RRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS 193
Query: 432 SVTVIRKIFTTIASVGPASGVILASYAGCDQILVVTLFTVGMAFMGFFYPSLKVNALDLS 491
S TV + ++ + L + + + + + + +
Sbjct: 194 SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFAT 253
Query: 492 PNYAGTLMAIVNGIGAISGIISPYLIGILVPNSTMLEWRLVFWISFGVIM 541
+ V +G + + +++ L+ V +
Sbjct: 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRI 303
Score = 28.2 bits (61), Expect = 7.5
Identities = 24/213 (11%), Positives = 58/213 (27%), Gaps = 6/213 (2%)
Query: 944 PLFKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFA 1003
P V ++ F W + VI A+ F
Sbjct: 192 PSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF 251
Query: 1004 SNGLLSALPFLFMWIFSQGAGCLSDFIVERQWFSMTLTRKIFATAASMGPAVGIILASYS 1063
+ G F ++ + F + + M +V II +S++
Sbjct: 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIM--SVRIIGSSFA 309
Query: 1064 GCNKVLAVMFFAIGMGFMGFYYPSIRINSLDLSPNYAATLMAIVNGLG-AVSGIFSAPLI 1122
+ ++ + + ++AT+ + ++ IF + L
Sbjct: 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369
Query: 1123 GIMTPNSTMSEWRLVFWLTFIILAVTNLFYLVF 1155
G M + ++ + + ++ L +
Sbjct: 370 GNMYESIG---FQGAYLVLGLVALGFTLISVFT 399
>d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum,
serotype E [TaxId: 1491]}
Length = 411
Score = 28.3 bits (63), Expect = 7.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 695 KLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFISQKEMDYLEETIGSL 748
L NNY P + FG++AI+ F +++ N FI + + + I SL
Sbjct: 165 SLRNNYMPS-NHGFGSIAIVTFSPEYSFRFNDNSMNEFIQDPALTLMHQLIHSL 217
>d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas
paucimobilis, UT26, LinB [TaxId: 13689]}
Length = 298
Score = 27.5 bits (59), Expect = 8.6
Identities = 19/167 (11%), Positives = 38/167 (22%), Gaps = 5/167 (2%)
Query: 675 VWAGIIMGTVISSSLTGLLLKLTNNYWPVVFYLFGAVAILWFVVWLFIGYSEPGSNPFIS 734
V M + + + + G +L V++ P
Sbjct: 124 VQGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSE 183
Query: 735 QKEMDYLEETIGSLTRRKYVLRKHADKYNRFQDLPPTPWKEMATSWPVIALVITQVVLIS 794
+ Y E + + R+ L W + + +
Sbjct: 184 AEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAE 243
Query: 795 LFYLPPTPWKEMATSWPVIALVITQVGHDWGLFTIAADLPKYFASVI 841
L ++ +WP + H I D P + I
Sbjct: 244 PGALTTGRMRDFCRTWPNQTEITVAGAH-----FIQEDSPDEIGAAI 285
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.141 0.455
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,670,836
Number of extensions: 228299
Number of successful extensions: 602
Number of sequences better than 10.0: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 37
Length of query: 1188
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1093
Effective length of database: 1,103,246
Effective search space: 1205847878
Effective search space used: 1205847878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.4 bits)