BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4740
         (147 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UWG|H Chain H, Molecular Mechanism Of Enantioselective Proton Transfer To
           Carbon In Catalytic Antibody 14d9
 pdb|1UWG|Y Chain Y, Molecular Mechanism Of Enantioselective Proton Transfer To
           Carbon In Catalytic Antibody 14d9
          Length = 225

 Score = 30.8 bits (68), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIAL---RFFEGLGEGTT 57
           H  G +  QKF GK TL     S+  F  L    +  SA +  A+    FF+  G GTT
Sbjct: 54  HNGGPVYNQKFNGKATLTVDKSSSTAFMHLNSLTSEDSAVYYCAIFYGNFFDYWGPGTT 112


>pdb|1UWE|H Chain H, Molecular Mechanism Of Enantioselective Proton Transfer To
           Carbon In Catalytic Antibody 14d9
 pdb|1UWE|V Chain V, Molecular Mechanism Of Enantioselective Proton Transfer To
           Carbon In Catalytic Antibody 14d9
 pdb|1UWE|Y Chain Y, Molecular Mechanism Of Enantioselective Proton Transfer To
           Carbon In Catalytic Antibody 14d9
          Length = 218

 Score = 29.6 bits (65), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 2   HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIAL---RFFEGLGEGTT 57
           H  GG   QKF  K TL     S+  +  L    +  SA +  A+    FF+  G+GTT
Sbjct: 52  HNGGGAYNQKFRVKATLTVDTSSSTAYIHLNSLTSEDSAVYYCAIFYGNFFDYWGQGTT 110


>pdb|2RD9|A Chain A, Crystal Structure Of A Putative Yfit-Like Metal-Dependent
           Hydrolase (Bh0186) From Bacillus Halodurans C-125 At
           2.30 A Resolution
 pdb|2RD9|B Chain B, Crystal Structure Of A Putative Yfit-Like Metal-Dependent
           Hydrolase (Bh0186) From Bacillus Halodurans C-125 At
           2.30 A Resolution
 pdb|2RD9|C Chain C, Crystal Structure Of A Putative Yfit-Like Metal-Dependent
           Hydrolase (Bh0186) From Bacillus Halodurans C-125 At
           2.30 A Resolution
 pdb|2RD9|D Chain D, Crystal Structure Of A Putative Yfit-Like Metal-Dependent
           Hydrolase (Bh0186) From Bacillus Halodurans C-125 At
           2.30 A Resolution
          Length = 193

 Score = 28.5 bits (62), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 16  HTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL----LAQWVPP 71
           H    G  +  ++ ++      +  NW+  LRF    GE   FPA +       +  VP 
Sbjct: 50  HQCNEGYETWTVYEVVVHLIEAEKTNWIPRLRFILQEGEHKPFPAFDRFSHLNQSNAVPI 109

Query: 72  TERGK 76
           +ER K
Sbjct: 110 SERFK 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.145    0.481 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,808,847
Number of Sequences: 62578
Number of extensions: 193861
Number of successful extensions: 353
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 8
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)