Query psy4740
Match_columns 147
No_of_seqs 166 out of 1397
Neff 10.9
Searched_HMMs 46136
Date Sat Aug 17 00:48:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02332 HpaX 4-hydroxyphenyl 99.9 2.1E-21 4.5E-26 139.0 12.8 133 2-136 60-196 (412)
2 PRK14995 methyl viologen resis 99.8 3.6E-20 7.7E-25 135.4 11.8 129 2-134 58-187 (495)
3 PRK03545 putative arabinose tr 99.8 3.8E-20 8.3E-25 131.5 11.7 128 2-133 61-188 (390)
4 TIGR00903 2A0129 major facilit 99.8 7.2E-20 1.6E-24 129.4 12.8 130 2-136 43-172 (368)
5 TIGR00894 2A0114euk Na(+)-depe 99.8 4.3E-20 9.2E-25 134.0 11.6 133 2-136 93-226 (465)
6 TIGR00893 2A0114 d-galactonate 99.8 3.5E-20 7.7E-25 130.6 10.7 129 2-134 46-174 (399)
7 PRK15403 multidrug efflux syst 99.8 7.2E-20 1.6E-24 131.1 12.4 128 2-133 68-195 (413)
8 PRK10642 proline/glycine betai 99.8 2.8E-20 6.1E-25 135.8 10.5 130 2-134 74-217 (490)
9 KOG2532|consensus 99.8 3.1E-20 6.7E-25 134.0 10.4 141 1-142 89-229 (466)
10 KOG1330|consensus 99.8 2.8E-22 6.2E-27 141.1 -0.6 130 2-134 85-214 (493)
11 PRK10213 nepI ribonucleoside t 99.8 1.1E-19 2.3E-24 129.6 12.1 128 2-133 72-199 (394)
12 PRK11663 regulatory protein Uh 99.8 2E-19 4.4E-24 129.5 12.5 128 2-133 75-202 (434)
13 PRK10406 alpha-ketoglutarate t 99.8 1.5E-19 3.1E-24 130.2 11.7 118 2-121 80-211 (432)
14 COG2271 UhpC Sugar phosphate p 99.8 3.2E-20 6.9E-25 129.7 7.9 131 2-136 81-213 (448)
15 COG2814 AraJ Arabinose efflux 99.8 1.8E-19 3.9E-24 126.4 11.6 125 2-130 65-189 (394)
16 PRK09952 shikimate transporter 99.8 2.1E-19 4.5E-24 129.6 11.3 117 2-120 81-211 (438)
17 PF07690 MFS_1: Major Facilita 99.8 9.2E-20 2E-24 127.2 9.2 126 2-131 49-174 (352)
18 TIGR00900 2A0121 H+ Antiporter 99.8 2E-19 4.4E-24 125.9 10.8 125 2-128 51-178 (365)
19 TIGR00710 efflux_Bcr_CflA drug 99.8 5.5E-19 1.2E-23 124.8 12.6 129 2-134 57-185 (385)
20 TIGR00891 2A0112 putative sial 99.8 5.2E-19 1.1E-23 125.5 12.0 128 2-132 64-191 (405)
21 PRK10091 MFS transport protein 99.8 4.2E-19 9.1E-24 126.0 11.5 128 2-133 55-182 (382)
22 TIGR00881 2A0104 phosphoglycer 99.8 2.7E-19 5.8E-24 125.7 9.9 129 1-133 46-175 (379)
23 TIGR00887 2A0109 phosphate:H+ 99.8 4E-19 8.6E-24 130.1 10.9 132 2-134 73-229 (502)
24 TIGR00711 efflux_EmrB drug res 99.8 3.3E-19 7.1E-24 129.6 9.7 128 2-133 54-181 (485)
25 PRK11551 putative 3-hydroxyphe 99.8 5.1E-19 1.1E-23 126.2 10.5 128 2-133 67-194 (406)
26 PRK10473 multidrug efflux syst 99.8 1.9E-18 4.1E-23 122.8 12.5 128 2-133 55-182 (392)
27 PRK11102 bicyclomycin/multidru 99.8 1.6E-18 3.4E-23 122.5 12.0 128 2-133 43-170 (377)
28 TIGR00890 2A0111 Oxalate/Forma 99.8 1.8E-18 3.8E-23 121.5 11.4 126 1-131 54-179 (377)
29 PRK10077 xylE D-xylose transpo 99.8 8.6E-19 1.9E-23 127.4 9.9 133 1-134 71-219 (479)
30 PRK09705 cynX putative cyanate 99.8 5.9E-18 1.3E-22 120.6 13.5 117 2-122 61-177 (393)
31 TIGR00898 2A0119 cation transp 99.8 1.6E-18 3.4E-23 126.9 10.5 126 1-134 143-268 (505)
32 PRK09556 uhpT sugar phosphate 99.8 7.8E-19 1.7E-23 127.6 8.7 134 1-134 80-217 (467)
33 PRK12307 putative sialic acid 99.8 2E-18 4.4E-23 123.8 9.5 113 2-118 70-182 (426)
34 TIGR01299 synapt_SV2 synaptic 99.8 1.3E-18 2.9E-23 131.4 8.9 130 2-134 219-359 (742)
35 PRK15402 multidrug efflux syst 99.8 6.8E-18 1.5E-22 120.5 12.1 128 2-133 65-192 (406)
36 TIGR00880 2_A_01_02 Multidrug 99.8 1.1E-17 2.5E-22 102.3 11.3 125 2-130 15-139 (141)
37 PRK11646 multidrug resistance 99.8 1.2E-17 2.6E-22 119.3 12.8 125 2-131 63-187 (400)
38 PRK15075 citrate-proton sympor 99.8 7.5E-18 1.6E-22 121.4 11.2 114 2-117 73-200 (434)
39 PRK11273 glpT sn-glycerol-3-ph 99.8 1.7E-17 3.8E-22 120.1 12.7 132 1-134 79-213 (452)
40 PRK10207 dipeptide/tripeptide 99.8 2.5E-17 5.5E-22 120.3 13.4 115 2-120 67-185 (489)
41 PRK11652 emrD multidrug resist 99.8 1.3E-17 2.7E-22 118.7 11.5 129 2-134 60-188 (394)
42 PRK03699 putative transporter; 99.8 2.7E-17 5.7E-22 117.2 13.1 121 2-125 59-179 (394)
43 TIGR00879 SP MFS transporter, 99.8 3.1E-18 6.7E-23 123.5 8.3 129 2-133 88-220 (481)
44 KOG0255|consensus 99.8 7.1E-18 1.5E-22 124.0 10.0 126 1-134 134-259 (521)
45 PRK10504 putative transporter; 99.8 1.9E-17 4.2E-22 120.3 12.1 127 2-132 62-188 (471)
46 TIGR00712 glpT glycerol-3-phos 99.8 2.5E-17 5.4E-22 118.9 12.3 133 1-134 77-211 (438)
47 KOG2533|consensus 99.8 7.5E-18 1.6E-22 122.3 9.6 140 1-142 97-240 (495)
48 TIGR00886 2A0108 nitrite extru 99.8 2.6E-17 5.6E-22 115.8 12.2 129 2-133 54-192 (366)
49 PRK10054 putative transporter; 99.7 1.6E-17 3.5E-22 118.5 10.9 125 2-131 60-184 (395)
50 PRK09874 drug efflux system pr 99.7 4E-17 8.7E-22 116.4 12.9 126 2-132 71-196 (408)
51 TIGR00895 2A0115 benzoate tran 99.7 8.5E-18 1.8E-22 118.9 9.4 128 2-133 69-196 (398)
52 TIGR00883 2A0106 metabolite-pr 99.7 2.8E-17 6.1E-22 116.0 11.8 118 2-121 52-183 (394)
53 PRK11195 lysophospholipid tran 99.7 1.6E-17 3.6E-22 118.3 10.6 123 2-133 55-177 (393)
54 TIGR00924 yjdL_sub1_fam amino 99.7 5.4E-17 1.2E-21 118.3 13.4 120 2-125 65-188 (475)
55 PLN00028 nitrate transmembrane 99.7 4.7E-17 1E-21 118.6 12.1 130 2-134 88-224 (476)
56 PRK05122 major facilitator sup 99.7 6.3E-17 1.4E-21 115.3 12.1 118 1-120 67-190 (399)
57 KOG0254|consensus 99.7 1.7E-17 3.7E-22 121.9 9.4 130 2-135 106-235 (513)
58 PRK11043 putative transporter; 99.7 7.1E-17 1.5E-21 115.1 12.0 125 2-130 58-182 (401)
59 TIGR00892 2A0113 monocarboxyla 99.7 9.8E-17 2.1E-21 116.3 12.3 124 2-130 71-195 (455)
60 TIGR00899 2A0120 sugar efflux 99.7 1.2E-16 2.6E-21 112.7 12.4 129 2-134 50-181 (375)
61 PRK03893 putative sialic acid 99.7 4.4E-17 9.5E-22 119.0 10.4 113 2-118 72-184 (496)
62 KOG3764|consensus 99.7 2.6E-17 5.6E-22 114.5 8.0 131 2-136 123-254 (464)
63 cd06174 MFS The Major Facilita 99.7 1.6E-16 3.6E-21 110.4 12.2 120 2-125 51-170 (352)
64 PRK12382 putative transporter; 99.7 2E-16 4.4E-21 112.5 12.2 116 1-118 67-188 (392)
65 TIGR01299 synapt_SV2 synaptic 99.7 2.7E-16 5.9E-21 119.1 11.2 127 2-134 612-738 (742)
66 KOG2615|consensus 99.7 1.4E-16 3.1E-21 110.4 8.5 97 2-101 85-181 (451)
67 TIGR00889 2A0110 nucleoside tr 99.7 8E-16 1.7E-20 110.5 12.1 132 2-133 268-406 (418)
68 TIGR00806 rfc RFC reduced fola 99.7 6.7E-16 1.4E-20 110.8 10.9 122 2-130 79-203 (511)
69 TIGR00885 fucP L-fucose:H+ sym 99.7 1.8E-15 3.8E-20 108.5 12.1 123 2-124 55-202 (410)
70 KOG0569|consensus 99.7 4E-16 8.6E-21 112.5 8.6 134 1-135 76-210 (485)
71 PRK15462 dipeptide/tripeptide 99.7 2.3E-15 4.9E-20 109.6 12.6 120 2-124 62-184 (493)
72 TIGR00805 oat sodium-independe 99.7 3.6E-16 7.8E-21 117.2 8.7 130 2-131 85-283 (633)
73 PRK06814 acylglycerophosphoeth 99.7 1.6E-15 3.4E-20 120.3 12.4 126 2-132 69-197 (1140)
74 PRK09584 tppB putative tripept 99.7 4.6E-15 9.9E-20 108.8 13.7 116 3-121 75-193 (500)
75 TIGR00897 2A0118 polyol permea 99.7 2.3E-15 4.9E-20 107.6 11.6 128 2-131 65-195 (402)
76 TIGR00896 CynX cyanate transpo 99.7 4.7E-15 1E-19 104.2 12.8 115 2-120 52-166 (355)
77 PRK10489 enterobactin exporter 99.6 5.8E-16 1.3E-20 111.0 8.2 128 2-132 69-199 (417)
78 PRK15034 nitrate/nitrite trans 99.6 2.8E-15 6.2E-20 108.2 11.5 131 2-133 87-236 (462)
79 PRK05122 major facilitator sup 99.6 4.2E-15 9E-20 106.0 12.2 126 2-131 266-391 (399)
80 PF06609 TRI12: Fungal trichot 99.6 1.6E-15 3.5E-20 111.9 10.1 123 2-129 95-217 (599)
81 PF00083 Sugar_tr: Sugar (and 99.6 6.1E-19 1.3E-23 127.4 -7.9 131 1-134 62-196 (451)
82 PRK08633 2-acyl-glycerophospho 99.6 3.9E-15 8.4E-20 118.0 12.5 101 2-102 64-165 (1146)
83 TIGR00901 2A0125 AmpG-related 99.6 6.5E-15 1.4E-19 103.5 12.0 129 2-132 38-181 (356)
84 PRK03633 putative MFS family t 99.6 4.1E-15 8.8E-20 105.6 10.8 99 2-102 58-156 (381)
85 PTZ00207 hypothetical protein; 99.6 5.7E-15 1.2E-19 109.3 11.2 128 2-133 78-209 (591)
86 PRK10133 L-fucose transporter; 99.6 1E-14 2.3E-19 105.4 12.3 97 2-100 78-177 (438)
87 PRK11010 ampG muropeptide tran 99.6 1.1E-14 2.5E-19 106.6 12.1 128 2-132 62-197 (491)
88 PRK15011 sugar efflux transpor 99.6 2.2E-14 4.7E-19 102.3 12.5 127 4-134 70-199 (393)
89 PRK12382 putative transporter; 99.6 1.7E-14 3.8E-19 102.6 10.5 123 2-128 266-388 (392)
90 KOG0252|consensus 99.6 2.5E-15 5.3E-20 106.5 5.2 134 1-135 100-251 (538)
91 PRK09874 drug efflux system pr 99.6 2.2E-14 4.8E-19 102.3 10.2 123 3-129 276-398 (408)
92 PRK09528 lacY galactoside perm 99.6 8.7E-15 1.9E-19 105.1 8.1 129 2-134 279-408 (420)
93 COG2223 NarK Nitrate/nitrite t 99.6 1.8E-14 4E-19 101.0 9.3 129 3-135 67-199 (417)
94 PRK10642 proline/glycine betai 99.6 6.2E-14 1.3E-18 102.7 12.6 132 2-135 303-435 (490)
95 PRK11902 ampG muropeptide tran 99.6 8.2E-14 1.8E-18 99.6 11.8 129 2-132 49-184 (402)
96 PRK10489 enterobactin exporter 99.5 1.1E-13 2.3E-18 99.4 10.1 134 2-139 276-409 (417)
97 TIGR00890 2A0111 Oxalate/Forma 99.5 1.2E-13 2.6E-18 97.1 9.9 117 2-120 257-373 (377)
98 cd06174 MFS The Major Facilita 99.5 3E-13 6.5E-18 94.1 10.6 120 2-125 228-348 (352)
99 PRK11551 putative 3-hydroxyphe 99.5 5.2E-13 1.1E-17 95.4 10.9 124 2-128 272-395 (406)
100 TIGR00879 SP MFS transporter, 99.5 4.8E-13 1.1E-17 96.6 10.8 130 2-133 336-474 (481)
101 PRK09556 uhpT sugar phosphate 99.5 2.7E-13 5.8E-18 98.8 9.4 127 2-128 311-448 (467)
102 PRK15011 sugar efflux transpor 99.5 7.1E-13 1.5E-17 94.6 11.4 121 2-127 269-389 (393)
103 PRK11128 putative 3-phenylprop 99.5 1E-12 2.2E-17 93.5 12.1 112 2-121 56-171 (382)
104 PF05977 MFS_3: Transmembrane 99.5 4.1E-13 8.9E-18 98.8 9.8 125 2-128 62-189 (524)
105 TIGR00882 2A0105 oligosacchari 99.5 5.1E-13 1.1E-17 95.3 9.7 126 2-132 55-186 (396)
106 TIGR00902 2A0127 phenyl propri 99.4 2E-12 4.3E-17 92.0 11.2 111 2-118 56-168 (382)
107 PRK03893 putative sialic acid 99.4 1.4E-12 3E-17 95.5 10.6 115 2-118 328-442 (496)
108 KOG2504|consensus 99.4 1.7E-12 3.8E-17 95.2 10.9 128 2-134 98-226 (509)
109 PRK10077 xylE D-xylose transpo 99.4 8.2E-13 1.8E-17 96.2 9.2 132 2-135 323-463 (479)
110 TIGR00899 2A0120 sugar efflux 99.4 1.9E-12 4.2E-17 91.3 10.5 119 3-126 253-371 (375)
111 PRK03545 putative arabinose tr 99.4 5E-12 1.1E-16 90.1 12.4 123 2-130 258-381 (390)
112 PRK09952 shikimate transporter 99.4 4.2E-12 9.2E-17 91.9 12.1 125 3-127 304-431 (438)
113 COG3104 PTR2 Dipeptide/tripept 99.4 1.7E-12 3.7E-17 93.1 9.7 126 2-129 78-206 (498)
114 TIGR00898 2A0119 cation transp 99.4 3.2E-12 7E-17 93.8 10.5 127 3-134 373-499 (505)
115 KOG0253|consensus 99.4 3.3E-12 7.1E-17 89.1 9.6 126 2-134 130-255 (528)
116 PRK09528 lacY galactoside perm 99.4 3.6E-12 7.7E-17 91.7 10.0 126 2-132 63-194 (420)
117 TIGR00887 2A0109 phosphate:H+ 99.4 4.4E-12 9.6E-17 93.2 10.6 132 3-135 353-494 (502)
118 TIGR00792 gph sugar (Glycoside 99.4 6.8E-12 1.5E-16 90.4 11.1 133 1-133 51-198 (437)
119 PRK12307 putative sialic acid 99.4 8.2E-12 1.8E-16 89.8 11.1 109 2-112 283-391 (426)
120 PF11700 ATG22: Vacuole efflux 99.4 1.2E-11 2.6E-16 90.2 11.8 124 2-126 334-465 (477)
121 TIGR01301 GPH_sucrose GPH fami 99.4 6.1E-12 1.3E-16 91.5 10.0 130 2-133 56-222 (477)
122 PRK03633 putative MFS family t 99.4 1.9E-11 4.2E-16 86.9 12.1 114 2-122 252-365 (381)
123 COG0738 FucP Fucose permease [ 99.4 2.3E-11 5.1E-16 85.4 12.0 127 2-128 65-209 (422)
124 TIGR00892 2A0113 monocarboxyla 99.4 3.9E-12 8.4E-17 92.5 8.2 119 2-123 293-415 (455)
125 PRK09705 cynX putative cyanate 99.3 3E-11 6.5E-16 86.3 11.9 129 2-134 257-386 (393)
126 PRK11273 glpT sn-glycerol-3-ph 99.3 1.1E-11 2.3E-16 90.1 9.2 126 2-129 306-435 (452)
127 KOG0253|consensus 99.3 9.9E-12 2.1E-16 86.7 7.2 124 1-132 397-522 (528)
128 TIGR00902 2A0127 phenyl propri 99.3 5.5E-11 1.2E-15 84.6 11.3 113 3-121 258-371 (382)
129 PRK11663 regulatory protein Uh 99.3 5.4E-11 1.2E-15 86.0 10.8 128 2-131 296-426 (434)
130 PRK03699 putative transporter; 99.3 2.9E-11 6.3E-16 86.4 9.3 122 2-128 258-379 (394)
131 TIGR00883 2A0106 metabolite-pr 99.3 2E-11 4.2E-16 86.3 7.8 115 2-118 272-390 (394)
132 PRK10054 putative transporter; 99.3 1.6E-10 3.4E-15 82.8 12.0 121 2-126 261-381 (395)
133 PRK11010 ampG muropeptide tran 99.3 1.6E-10 3.4E-15 84.9 11.9 126 2-129 276-403 (491)
134 TIGR00893 2A0114 d-galactonate 99.3 9.3E-11 2E-15 82.7 10.4 122 2-126 268-396 (399)
135 TIGR00891 2A0112 putative sial 99.3 5.6E-11 1.2E-15 84.5 9.3 108 2-113 291-400 (405)
136 TIGR00792 gph sugar (Glycoside 99.2 5.1E-11 1.1E-15 85.9 9.0 100 2-102 274-380 (437)
137 PRK10504 putative transporter; 99.2 1.5E-10 3.3E-15 84.4 11.1 100 3-102 315-415 (471)
138 TIGR00897 2A0118 polyol permea 99.2 2.1E-10 4.6E-15 82.2 11.2 122 2-127 274-399 (402)
139 TIGR00882 2A0105 oligosacchari 99.2 1E-10 2.3E-15 83.5 9.3 120 3-126 272-392 (396)
140 PRK15075 citrate-proton sympor 99.2 2.7E-10 5.9E-15 82.4 10.9 107 2-108 291-400 (434)
141 PF01306 LacY_symp: LacY proto 99.2 7.2E-10 1.6E-14 79.1 12.0 127 4-134 278-405 (412)
142 PRK15034 nitrate/nitrite trans 99.2 8.7E-10 1.9E-14 80.1 12.3 128 2-130 303-455 (462)
143 COG2270 Permeases of the major 99.2 1.9E-10 4E-15 81.4 8.4 121 1-124 304-424 (438)
144 PRK10406 alpha-ketoglutarate t 99.2 6.2E-10 1.3E-14 80.5 11.4 124 2-127 296-422 (432)
145 PRK15402 multidrug efflux syst 99.2 8.5E-10 1.8E-14 79.0 11.7 126 2-130 268-396 (406)
146 PF05977 MFS_3: Transmembrane 99.1 7.2E-10 1.6E-14 81.9 10.6 119 3-125 272-390 (524)
147 TIGR02718 sider_RhtX_FptX side 99.1 9E-10 1.9E-14 78.6 10.8 117 3-121 262-383 (390)
148 TIGR00900 2A0121 H+ Antiporter 99.1 2.8E-10 6.1E-15 79.8 7.9 99 2-102 264-363 (365)
149 PRK11128 putative 3-phenylprop 99.1 9.9E-10 2.2E-14 78.2 10.5 112 3-120 258-370 (382)
150 TIGR02718 sider_RhtX_FptX side 99.1 1.1E-09 2.3E-14 78.2 10.7 127 3-131 56-186 (390)
151 PRK09669 putative symporter Ya 99.1 1.8E-09 3.8E-14 78.4 11.4 131 2-132 62-207 (444)
152 TIGR00712 glpT glycerol-3-phos 99.1 6E-10 1.3E-14 80.7 8.8 130 2-133 304-437 (438)
153 PLN00028 nitrate transmembrane 99.1 6.5E-10 1.4E-14 81.4 8.2 121 2-128 305-432 (476)
154 PRK11646 multidrug resistance 99.1 8.9E-10 1.9E-14 79.0 8.8 117 6-124 264-383 (400)
155 PF05631 DUF791: Protein of un 99.1 3.9E-09 8.6E-14 73.6 11.4 129 3-134 87-221 (354)
156 PF03825 Nuc_H_symport: Nucleo 99.1 4.4E-09 9.4E-14 75.5 11.9 126 4-130 262-396 (400)
157 KOG0569|consensus 99.1 4.8E-09 1E-13 76.4 12.0 131 3-136 323-461 (485)
158 PRK09848 glucuronide transport 99.1 7.2E-10 1.6E-14 80.5 7.7 101 2-102 281-388 (448)
159 TIGR00889 2A0110 nucleoside tr 99.0 3.6E-09 7.9E-14 76.3 10.5 120 2-133 55-183 (418)
160 PRK11902 ampG muropeptide tran 99.0 7E-09 1.5E-13 74.4 11.9 118 2-126 263-387 (402)
161 COG2814 AraJ Arabinose efflux 99.0 1.3E-08 2.8E-13 72.3 12.6 125 1-130 263-387 (394)
162 PRK10429 melibiose:sodium symp 99.0 7.1E-09 1.5E-13 75.9 11.5 131 2-132 59-204 (473)
163 PRK08633 2-acyl-glycerophospho 99.0 2.4E-09 5.2E-14 85.5 9.6 115 2-119 286-400 (1146)
164 KOG2816|consensus 99.0 4.9E-09 1.1E-13 76.3 10.1 124 2-134 79-204 (463)
165 TIGR00788 fbt folate/biopterin 99.0 3.5E-09 7.6E-14 77.5 9.2 124 3-132 78-211 (468)
166 TIGR00895 2A0115 benzoate tran 99.0 1.1E-09 2.3E-14 77.7 6.3 95 2-99 302-397 (398)
167 PRK10091 MFS transport protein 99.0 1.1E-08 2.3E-13 73.0 11.0 123 2-128 252-375 (382)
168 PF06813 Nodulin-like: Nodulin 99.0 2.1E-08 4.4E-13 67.5 11.3 100 2-102 53-157 (250)
169 COG2223 NarK Nitrate/nitrite t 99.0 1.1E-08 2.5E-13 72.4 10.3 128 2-131 271-403 (417)
170 PRK09669 putative symporter Ya 99.0 1.2E-08 2.5E-13 74.2 10.5 101 3-103 282-389 (444)
171 TIGR02332 HpaX 4-hydroxyphenyl 99.0 2.1E-09 4.6E-14 77.3 6.6 114 2-118 296-410 (412)
172 PF13347 MFS_2: MFS/sugar tran 99.0 2.7E-09 5.8E-14 77.1 7.1 130 2-131 54-200 (428)
173 KOG3762|consensus 98.9 2.5E-09 5.5E-14 77.8 6.2 118 3-124 424-542 (618)
174 TIGR00711 efflux_EmrB drug res 98.9 5.1E-09 1.1E-13 76.5 7.4 101 2-102 308-410 (485)
175 COG2807 CynX Cyanate permease 98.9 5.4E-08 1.2E-12 68.0 11.8 122 2-128 64-185 (395)
176 PRK10473 multidrug efflux syst 98.9 2.2E-08 4.8E-13 71.4 10.3 106 2-116 256-361 (392)
177 PRK14995 methyl viologen resis 98.9 7.7E-09 1.7E-13 76.2 8.1 101 2-102 312-413 (495)
178 TIGR00903 2A0129 major facilit 98.9 2.9E-08 6.4E-13 70.6 10.8 116 5-126 243-362 (368)
179 PRK11462 putative transporter; 98.9 4.8E-08 1E-12 71.4 11.9 131 2-132 62-207 (460)
180 PRK11195 lysophospholipid tran 98.9 2.9E-08 6.4E-13 71.1 10.5 112 3-120 259-371 (393)
181 COG2271 UhpC Sugar phosphate p 98.9 3.4E-09 7.4E-14 75.2 5.5 129 1-131 304-436 (448)
182 PRK10213 nepI ribonucleoside t 98.9 5.2E-08 1.1E-12 69.8 11.4 113 3-121 270-383 (394)
183 TIGR00924 yjdL_sub1_fam amino 98.9 3.8E-08 8.1E-13 72.3 10.8 122 7-130 338-469 (475)
184 KOG2325|consensus 98.9 2.5E-08 5.4E-13 72.5 9.5 133 1-134 87-234 (488)
185 TIGR00926 2A1704 Peptide:H+ sy 98.9 2.4E-07 5.1E-12 70.4 14.8 126 3-128 41-181 (654)
186 TIGR01272 gluP glucose/galacto 98.9 3.6E-08 7.8E-13 68.6 9.6 87 38-124 8-108 (310)
187 KOG2563|consensus 98.9 3E-08 6.5E-13 70.9 9.2 136 3-138 97-244 (480)
188 TIGR00788 fbt folate/biopterin 98.8 2.4E-08 5.2E-13 73.1 9.0 129 3-131 306-447 (468)
189 COG0477 ProP Permeases of the 98.8 1.2E-07 2.5E-12 64.3 10.9 118 3-120 57-176 (338)
190 TIGR00881 2A0104 phosphoglycer 98.8 3E-08 6.6E-13 69.8 7.8 108 2-111 269-379 (379)
191 TIGR01272 gluP glucose/galacto 98.8 5.6E-08 1.2E-12 67.6 8.9 109 2-117 195-303 (310)
192 PRK10429 melibiose:sodium symp 98.8 2.7E-08 5.9E-13 72.9 7.6 101 2-102 283-393 (473)
193 PF00083 Sugar_tr: Sugar (and 98.8 4E-11 8.6E-16 86.9 -7.1 133 3-137 304-444 (451)
194 KOG2504|consensus 98.8 9.1E-09 2E-13 75.9 5.0 126 1-129 349-476 (509)
195 TIGR00894 2A0114euk Na(+)-depe 98.8 6.4E-08 1.4E-12 70.7 9.2 89 39-128 360-449 (465)
196 PF13347 MFS_2: MFS/sugar tran 98.8 1.2E-07 2.5E-12 68.7 10.4 101 2-102 277-384 (428)
197 PRK09584 tppB putative tripept 98.8 5.9E-08 1.3E-12 71.7 8.4 121 6-126 341-476 (500)
198 PRK11043 putative transporter; 98.8 2.1E-07 4.5E-12 66.7 11.0 99 3-102 256-357 (401)
199 TIGR00896 CynX cyanate transpo 98.8 4.4E-08 9.6E-13 69.0 7.5 99 2-103 249-349 (355)
200 KOG4686|consensus 98.8 8.1E-08 1.8E-12 65.6 8.2 112 2-117 317-430 (459)
201 PF07690 MFS_1: Major Facilita 98.7 3.5E-08 7.6E-13 68.9 6.0 91 3-93 261-352 (352)
202 TIGR00901 2A0125 AmpG-related 98.7 3.2E-08 6.9E-13 69.7 5.7 85 2-86 262-355 (356)
203 PF11700 ATG22: Vacuole efflux 98.7 7.1E-07 1.5E-11 65.6 12.7 132 3-134 88-252 (477)
204 TIGR00710 efflux_Bcr_CflA drug 98.7 2.3E-07 4.9E-12 65.8 9.8 94 2-96 259-356 (385)
205 PRK06814 acylglycerophosphoeth 98.7 7.9E-08 1.7E-12 77.1 8.3 118 2-120 278-413 (1140)
206 PRK10133 L-fucose transporter; 98.7 2.1E-07 4.5E-12 67.7 9.5 115 2-123 312-427 (438)
207 KOG0252|consensus 98.7 2.4E-08 5.2E-13 71.7 4.2 133 3-136 366-504 (538)
208 PRK10207 dipeptide/tripeptide 98.7 1.6E-07 3.4E-12 69.2 8.1 125 3-127 327-474 (489)
209 PF03092 BT1: BT1 family; Int 98.6 3.8E-07 8.2E-12 66.3 9.7 128 2-131 41-177 (433)
210 PF03209 PUCC: PUCC protein; 98.6 8.4E-07 1.8E-11 63.1 10.7 101 2-102 31-151 (403)
211 COG2211 MelB Na+/melibiose sym 98.6 1.3E-06 2.9E-11 63.5 12.0 133 2-134 65-212 (467)
212 TIGR01301 GPH_sucrose GPH fami 98.6 9.9E-07 2.1E-11 64.7 11.1 131 4-134 324-476 (477)
213 TIGR00885 fucP L-fucose:H+ sym 98.6 3.3E-07 7.1E-12 66.2 8.6 114 2-120 286-403 (410)
214 KOG0254|consensus 98.6 7.6E-07 1.7E-11 66.0 10.1 132 4-137 348-491 (513)
215 KOG0255|consensus 98.6 2.2E-06 4.8E-11 63.6 11.8 129 6-137 371-500 (521)
216 COG2211 MelB Na+/melibiose sym 98.5 9.4E-07 2E-11 64.2 9.3 100 3-102 290-396 (467)
217 PRK11102 bicyclomycin/multidru 98.5 1.8E-06 3.9E-11 61.2 10.8 95 2-97 247-344 (377)
218 PF00854 PTR2: POT family; In 98.5 8.8E-07 1.9E-11 63.1 8.7 111 16-128 2-122 (372)
219 PF01306 LacY_symp: LacY proto 98.5 5.3E-07 1.2E-11 64.7 6.8 127 1-132 59-191 (412)
220 PF05978 UNC-93: Ion channel r 98.5 1.6E-06 3.5E-11 54.4 8.1 96 3-101 55-150 (156)
221 PRK11462 putative transporter; 98.4 1.7E-06 3.7E-11 63.4 8.4 100 3-102 281-387 (460)
222 PRK09848 glucuronide transport 98.4 5.3E-06 1.2E-10 60.4 10.0 96 2-97 61-172 (448)
223 PF03825 Nuc_H_symport: Nucleo 98.4 6E-06 1.3E-10 59.5 9.6 127 2-133 54-183 (400)
224 PF01770 Folate_carrier: Reduc 98.3 2.2E-05 4.8E-10 56.4 12.1 123 3-128 59-181 (412)
225 PRK11652 emrD multidrug resist 98.3 2.1E-05 4.6E-10 56.2 10.9 63 39-102 298-360 (394)
226 COG2807 CynX Cyanate permease 98.3 1.8E-05 3.9E-10 55.7 9.7 123 4-130 262-386 (395)
227 TIGR00886 2A0108 nitrite extru 98.2 3.5E-06 7.6E-11 59.4 5.9 86 2-88 278-365 (366)
228 KOG3764|consensus 98.2 1.1E-05 2.3E-10 57.6 8.0 124 1-128 322-453 (464)
229 KOG2532|consensus 98.1 1.3E-05 2.8E-10 58.8 7.6 130 3-133 312-451 (466)
230 PRK15403 multidrug efflux syst 98.1 6.7E-05 1.4E-09 54.3 9.8 80 38-121 310-389 (413)
231 KOG4686|consensus 98.0 2.2E-06 4.9E-11 58.7 1.4 101 2-102 96-198 (459)
232 KOG3626|consensus 97.9 0.0001 2.3E-09 56.4 8.9 132 3-134 150-348 (735)
233 PF03209 PUCC: PUCC protein; 97.8 0.00071 1.5E-08 48.6 11.4 120 5-124 264-393 (403)
234 COG0738 FucP Fucose permease [ 97.8 0.00017 3.6E-09 51.6 7.2 110 4-120 291-400 (422)
235 TIGR00769 AAA ADP/ATP carrier 97.7 0.001 2.2E-08 49.1 11.3 99 3-101 62-190 (472)
236 COG2270 Permeases of the major 97.7 0.00093 2E-08 48.2 10.0 133 2-134 75-225 (438)
237 PF06609 TRI12: Fungal trichot 97.6 0.00067 1.5E-08 51.3 8.8 96 3-98 367-463 (599)
238 PF03137 OATP: Organic Anion T 97.5 1.7E-05 3.7E-10 59.3 -0.1 99 3-101 56-202 (539)
239 PF02487 CLN3: CLN3 protein; 97.5 0.0023 5E-08 46.2 10.1 118 5-130 79-196 (402)
240 PRK15462 dipeptide/tripeptide 97.4 0.0032 6.9E-08 46.9 10.2 104 18-121 348-469 (493)
241 KOG2816|consensus 97.4 0.0045 9.8E-08 45.7 10.9 95 6-103 299-393 (463)
242 KOG2615|consensus 97.3 0.001 2.3E-08 47.6 6.2 85 17-103 331-415 (451)
243 KOG3098|consensus 97.2 0.0011 2.3E-08 48.7 5.8 92 2-96 67-158 (461)
244 PTZ00207 hypothetical protein; 97.2 0.0043 9.4E-08 47.2 9.0 105 20-128 435-551 (591)
245 KOG1237|consensus 97.1 0.0057 1.2E-07 46.3 8.6 123 3-127 91-243 (571)
246 KOG0637|consensus 97.0 0.0007 1.5E-08 49.3 3.0 98 2-99 84-202 (498)
247 PF03092 BT1: BT1 family; Int 97.0 0.0024 5.1E-08 46.8 5.7 83 48-131 326-414 (433)
248 KOG4332|consensus 96.8 0.0015 3.2E-08 45.0 3.5 113 4-120 91-211 (454)
249 KOG2533|consensus 96.4 0.0054 1.2E-07 45.7 4.4 106 3-112 327-439 (495)
250 KOG3098|consensus 96.0 0.087 1.9E-06 39.0 8.6 84 9-93 306-405 (461)
251 PF06963 FPN1: Ferroportin1 (F 96.0 0.063 1.4E-06 39.5 7.7 53 70-124 143-195 (432)
252 PF02487 CLN3: CLN3 protein; 95.9 0.076 1.7E-06 38.6 7.8 62 38-99 333-394 (402)
253 COG3104 PTR2 Dipeptide/tripept 95.9 0.078 1.7E-06 39.4 7.8 91 38-130 392-488 (498)
254 KOG2325|consensus 95.0 0.023 4.9E-07 42.2 2.7 86 42-129 389-475 (488)
255 KOG2563|consensus 94.7 0.035 7.6E-07 40.8 3.1 101 2-102 318-421 (480)
256 PF03219 TLC: TLC ATP/ADP tran 94.7 1 2.2E-05 33.9 10.6 41 61-101 165-205 (491)
257 PF12832 MFS_1_like: MFS_1 lik 94.5 0.024 5.2E-07 31.2 1.5 23 2-24 52-74 (77)
258 PRK03612 spermidine synthase; 93.8 2 4.2E-05 32.7 10.6 55 46-101 116-170 (521)
259 KOG3810|consensus 93.2 0.086 1.9E-06 37.8 2.6 118 8-128 65-182 (433)
260 KOG3880|consensus 93.0 0.56 1.2E-05 33.3 6.2 119 6-131 83-201 (409)
261 KOG3574|consensus 92.7 0.65 1.4E-05 34.0 6.4 92 3-94 81-187 (510)
262 KOG1330|consensus 91.7 0.36 7.7E-06 35.9 4.2 57 46-102 354-412 (493)
263 COG3202 ATP/ADP translocase [E 91.4 4.7 0.0001 30.5 9.6 99 4-102 81-210 (509)
264 PF06963 FPN1: Ferroportin1 (F 90.9 1.3 2.9E-05 32.7 6.5 97 3-99 311-415 (432)
265 KOG3880|consensus 89.8 2.7 5.9E-05 30.0 6.9 61 38-98 340-400 (409)
266 KOG4332|consensus 88.7 4 8.7E-05 28.8 7.1 83 40-124 344-426 (454)
267 PF13000 Acatn: Acetyl-coenzym 88.4 9.5 0.00021 29.1 9.3 41 59-99 137-177 (544)
268 KOG0637|consensus 85.2 0.49 1.1E-05 35.2 1.3 99 4-104 351-472 (498)
269 KOG1237|consensus 82.5 8.1 0.00018 29.9 6.8 65 39-103 457-521 (571)
270 KOG3626|consensus 81.4 5.1 0.00011 31.9 5.4 64 40-103 586-650 (735)
271 PF06779 DUF1228: Protein of u 79.9 2.1 4.5E-05 24.1 2.3 36 5-42 47-82 (85)
272 TIGR00939 2a57 Equilibrative N 79.6 15 0.00034 27.3 7.3 59 39-97 371-429 (437)
273 TIGR00769 AAA ADP/ATP carrier 78.3 25 0.00054 26.6 8.0 70 49-120 275-345 (472)
274 PF07672 MFS_Mycoplasma: Mycop 77.0 5 0.00011 27.7 3.8 60 72-131 2-64 (267)
275 PF04281 Tom22: Mitochondrial 76.9 8.1 0.00018 23.9 4.4 25 65-89 60-84 (137)
276 KOG3762|consensus 76.6 1.9 4.1E-05 33.0 1.9 34 2-35 63-97 (618)
277 KOG3097|consensus 75.5 13 0.00028 27.0 5.5 94 3-99 76-184 (390)
278 TIGR00986 3a0801s05tom22 mitoc 71.8 12 0.00026 23.3 4.2 22 65-86 58-79 (145)
279 TIGR00806 rfc RFC reduced fola 71.5 5.3 0.00012 30.3 3.1 78 4-83 317-396 (511)
280 PF12805 FUSC-like: FUSC-like 69.9 34 0.00074 23.8 7.4 31 21-52 5-35 (284)
281 PF11947 DUF3464: Protein of u 69.8 23 0.0005 22.4 5.2 82 7-91 56-145 (153)
282 TIGR00805 oat sodium-independe 69.7 5 0.00011 31.3 2.8 60 44-103 522-582 (633)
283 KOG1479|consensus 69.4 24 0.00052 26.2 5.9 58 38-95 341-398 (406)
284 TIGR00926 2A1704 Peptide:H+ sy 68.7 34 0.00073 27.1 7.0 58 40-97 565-622 (654)
285 PF03741 TerC: Integral membra 66.2 34 0.00073 22.3 6.6 54 61-118 17-70 (183)
286 TIGR01667 YCCS_YHJK integral m 62.0 70 0.0015 25.7 7.6 39 13-52 55-93 (701)
287 PF01733 Nucleoside_tran: Nucl 60.9 2.6 5.7E-05 29.6 -0.1 58 39-96 247-304 (309)
288 TIGR01666 YCCS hypothetical me 58.1 99 0.0021 25.0 7.8 39 13-52 55-93 (704)
289 PF03219 TLC: TLC ATP/ADP tran 56.1 90 0.002 23.9 8.2 66 51-118 293-359 (491)
290 COG5336 Uncharacterized protei 55.5 42 0.00091 19.9 7.0 33 71-103 37-69 (116)
291 PF10183 ESSS: ESSS subunit of 55.5 26 0.00057 20.5 3.5 29 105-133 57-85 (105)
292 PF03137 OATP: Organic Anion T 54.6 4.1 8.9E-05 31.2 0.0 61 42-102 453-514 (539)
293 TIGR00939 2a57 Equilibrative N 53.2 95 0.0021 23.3 9.0 51 40-95 106-156 (437)
294 KOG1479|consensus 52.5 96 0.0021 23.2 7.1 33 40-73 117-149 (406)
295 TIGR01478 STEVOR variant surfa 51.6 46 0.00099 23.4 4.5 28 106-133 260-287 (295)
296 KOG3810|consensus 50.9 20 0.00044 26.3 2.9 78 4-83 290-369 (433)
297 KOG3574|consensus 49.7 23 0.0005 26.4 3.1 57 46-102 375-431 (510)
298 PF11299 DUF3100: Protein of u 49.4 35 0.00077 23.2 3.7 52 44-96 175-226 (241)
299 PTZ00370 STEVOR; Provisional 48.9 30 0.00065 24.3 3.4 29 105-133 255-283 (296)
300 PF01770 Folate_carrier: Reduc 46.1 35 0.00075 25.4 3.6 74 5-80 305-380 (412)
301 PF07399 DUF1504: Protein of u 45.6 1.3E+02 0.0028 22.6 6.2 25 72-96 178-202 (438)
302 TIGR03716 R_switched_YkoY inte 45.0 95 0.0021 20.9 6.7 41 62-102 15-55 (215)
303 PF15061 DUF4538: Domain of un 43.8 18 0.0004 18.7 1.4 26 105-130 3-28 (58)
304 COG0861 TerC Membrane protein 42.5 1.1E+02 0.0025 21.1 7.3 56 54-113 30-85 (254)
305 PF13000 Acatn: Acetyl-coenzym 40.1 48 0.001 25.6 3.5 57 46-102 411-467 (544)
306 COG4698 Uncharacterized protei 39.2 66 0.0014 21.0 3.6 17 106-122 10-26 (197)
307 PF02990 EMP70: Endomembrane p 38.6 1.8E+02 0.004 22.4 7.1 42 68-109 289-331 (521)
308 PF06912 DUF1275: Protein of u 38.1 1.2E+02 0.0025 20.0 8.5 22 81-102 167-188 (209)
309 TIGR00383 corA magnesium Mg(2+ 32.9 1.3E+02 0.0028 21.2 4.7 20 105-124 288-307 (318)
310 PF07857 DUF1632: CEO family ( 32.7 1.7E+02 0.0037 20.3 5.9 24 108-131 115-138 (254)
311 PLN02332 membrane bound O-acyl 32.1 2.3E+02 0.005 21.6 8.8 23 106-128 429-451 (465)
312 PF06779 DUF1228: Protein of u 31.1 1E+02 0.0022 17.3 6.3 57 57-118 11-67 (85)
313 PF03911 Sec61_beta: Sec61beta 30.0 72 0.0016 15.1 2.6 19 11-29 17-35 (41)
314 PF01914 MarC: MarC family int 28.9 1.8E+02 0.0038 19.3 7.9 31 89-120 51-81 (203)
315 KOG2601|consensus 27.6 83 0.0018 23.6 3.0 143 3-147 81-244 (503)
316 PF07760 DUF1616: Protein of u 27.6 2.2E+02 0.0048 20.0 10.5 31 43-74 22-52 (287)
317 PRK14229 camphor resistance pr 27.5 1.4E+02 0.003 17.6 4.9 22 49-70 58-79 (108)
318 PRK09546 zntB zinc transporter 27.3 1.4E+02 0.0031 21.2 4.2 24 105-128 294-318 (324)
319 PF06645 SPC12: Microsomal sig 26.7 1.2E+02 0.0026 16.6 5.3 32 83-119 15-46 (76)
320 PF08222 HTH_CodY: CodY helix- 26.1 61 0.0013 16.8 1.6 19 2-20 4-22 (61)
321 PF06024 DUF912: Nucleopolyhed 25.5 77 0.0017 18.4 2.2 10 125-134 83-92 (101)
322 PRK15049 L-asparagine permease 24.2 3.3E+02 0.0071 20.8 9.7 20 106-125 446-465 (499)
323 COG2076 EmrE Membrane transpor 23.7 76 0.0017 18.7 1.9 14 87-100 66-79 (106)
324 PF08080 zf-RNPHF: RNPHF zinc 23.5 27 0.00058 16.0 0.0 10 9-18 3-12 (36)
325 COG5346 Predicted membrane pro 23.5 1.9E+02 0.004 17.7 5.0 19 6-24 83-101 (136)
326 COG4177 LivM ABC-type branched 23.4 1.6E+02 0.0035 21.1 3.8 55 42-101 210-268 (314)
327 COG2233 UraA Xanthine/uracil p 23.3 1.8E+02 0.004 22.1 4.2 18 13-30 321-338 (451)
328 COG1966 CstA Carbon starvation 23.1 1.8E+02 0.0038 22.9 4.1 32 67-99 48-80 (575)
329 KOG1278|consensus 23.0 3.3E+02 0.0071 21.6 5.4 12 44-55 369-380 (628)
330 TIGR00813 sss transporter, SSS 22.9 2.5E+02 0.0055 20.6 4.9 16 5-20 69-84 (407)
331 PF13937 DUF4212: Domain of un 22.7 1.5E+02 0.0033 16.5 5.2 32 90-121 27-58 (81)
332 COG0598 CorA Mg2+ and Co2+ tra 22.5 1.3E+02 0.0028 21.5 3.2 22 105-126 292-313 (322)
333 PF07672 MFS_Mycoplasma: Mycop 22.2 2.9E+02 0.0063 19.4 7.8 28 40-67 204-231 (267)
334 COG1455 CelB Phosphotransferas 22.0 1.1E+02 0.0024 23.0 2.9 9 105-113 389-397 (432)
335 PF13334 DUF4094: Domain of un 21.7 1.5E+02 0.0033 17.0 2.9 19 14-32 2-20 (95)
336 PLN02453 complex I subunit 21.6 92 0.002 18.2 1.9 28 105-132 59-86 (105)
337 PRK13453 F0F1 ATP synthase sub 21.5 1.5E+02 0.0032 19.0 3.1 25 106-130 17-41 (173)
338 PRK11085 magnesium/nickel/coba 21.3 2.4E+02 0.0051 20.3 4.3 19 105-123 286-304 (316)
339 PF05631 DUF791: Protein of un 20.4 3.6E+02 0.0078 19.9 6.2 55 48-102 247-304 (354)
340 PF06808 DctM: DctM-like trans 20.3 3.8E+02 0.0082 20.1 5.5 57 64-120 121-180 (416)
341 PF01350 Flavi_NS4A: Flaviviru 20.1 1.8E+02 0.004 18.3 3.1 12 121-132 108-119 (144)
No 1
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.87 E-value=2.1e-21 Score=138.99 Aligned_cols=133 Identities=22% Similarity=0.350 Sum_probs=117.8
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+.++..+++..+++. ++++.+++.|++.|++.+...+....++.|++|+++|++.++++
T Consensus 60 ~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~ 137 (412)
T TIGR02332 60 GIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA--TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALF 137 (412)
T ss_pred HhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 5788999999999999999999999999999888 88999999999999999999998889999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhh----cCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKY----TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH 136 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (147)
+....+|..+++.+++.+.+. +..+||+.|++.++..++..+..+++.||+|++.
T Consensus 138 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~ 196 (412)
T TIGR02332 138 MIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA 196 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC
Confidence 999999999999999988652 1258999999988888776666677778877543
No 2
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.84 E-value=3.6e-20 Score=135.42 Aligned_cols=129 Identities=21% Similarity=0.257 Sum_probs=114.3
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhc-CCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWV-PPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~ 80 (147)
++++|+++||+|||+++..+.++..++++.++.. ++++.+++.|++.|++.+...+.....+.+.+ |+++|++++++
T Consensus 58 ~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a--~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~ 135 (495)
T PRK14995 58 VLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS--PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGV 135 (495)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678999999999999999999999999999998 89999999999999999988887777776765 67999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
......+|..++|.+++.+.++ .+||+.|++...+.++..+......|++++
T Consensus 136 ~~~~~~~g~~~gp~lgg~l~~~--~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 136 WAAVGSGGAAFGPLVGGILLEH--FYWGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999988 799999999888877766666666666543
No 3
>PRK03545 putative arabinose transporter; Provisional
Probab=99.84 E-value=3.8e-20 Score=131.50 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=114.4
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|.+.||+|||+++..+.++.++++..+.+. ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.
T Consensus 61 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~ 138 (390)
T PRK03545 61 SLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA--WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLL 138 (390)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHH
Confidence 5678999999999999999999999999999888 89999999999999999888888999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
....++|..++|.+++.+.+. .+||+.|++.+++.++..+......|+.+
T Consensus 139 ~~~~~~g~~ig~~l~~~l~~~--~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 139 ATGTALAMVLGLPLGRVIGQY--LGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHHHHhhHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999998887 79999999998887766555555555543
No 4
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.84 E-value=7.2e-20 Score=129.37 Aligned_cols=130 Identities=15% Similarity=0.072 Sum_probs=105.4
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++.........+....... +++..+++.|++.|++++. .......++|++|+++|++++++.
T Consensus 43 ~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~ 119 (368)
T TIGR00903 43 TIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP--FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLL 119 (368)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHH
Confidence 5678999999999987765554444433322233 5889999999999999985 455666679999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH 136 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (147)
+....+|..+++.++..+.+. .+||+.|++.+++.++..+..++..||+|+++
T Consensus 120 ~~~~~lG~~l~~~~~~~l~~~--~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~ 172 (368)
T TIGR00903 120 SFAMYLGIIFALAAGLKIYTA--GGLQLLIIPIAAVAAAGIILVLAALPALPFQA 172 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999887 79999999988888777777777788876543
No 5
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.84 E-value=4.3e-20 Score=133.96 Aligned_cols=133 Identities=33% Similarity=0.710 Sum_probs=115.4
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+.++..+..+++......++..+++.|++.|++.+...+....+++|++|+++|++.+++.
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 172 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS 172 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence 67899999999999999999998888887765442245778899999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDG-DWPEIFYLFGILGVLWFVAWCFLCYNDPASH 136 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (147)
....++|..+++.+.+.+.+. . +||+.|++.++..++..+..+...+|+|+.+
T Consensus 173 ~~~~~~g~~i~~~l~~~l~~~--~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~ 226 (465)
T TIGR00894 173 TSGFQLGTFIFLPISGWLCES--WGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH 226 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC
Confidence 999999999999999988876 4 8999999999888777676666666666543
No 6
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.84 E-value=3.5e-20 Score=130.57 Aligned_cols=129 Identities=31% Similarity=0.571 Sum_probs=115.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+.++.+++...+... ++++.+++.|++.|++.+...+....++.|++|+++|++.+++.
T Consensus 46 ~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 123 (399)
T TIGR00893 46 QFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIF 123 (399)
T ss_pred HHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHH
Confidence 4678999999999999999999999999988888 79999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
....++|..+++.+.+.+.+. .+|++.|++.++..++..+...+..+|+++
T Consensus 124 ~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 124 NSAQGLGGIIGGPLVGWILIH--FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHhchHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 999999999999999988887 689999999888877766666656666544
No 7
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.84 E-value=7.2e-20 Score=131.15 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=112.3
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
++++|.++||+|||+++..+.++..++...+... ++++.+++.|++.|++.+...+.....+.|.+|+++|++.+++.
T Consensus 68 ~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (413)
T PRK15403 68 QWLLGPLSDRIGRRPVLITGALIFTLACAATLFT--TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAII 145 (413)
T ss_pred HHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5789999999999999999999999999988888 89999999999999988766666677889999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
.....++..++|.+++.+.++ .+||+.|++.++..++..+...+..||++
T Consensus 146 ~~~~~~~~~~g~~lg~~l~~~--~gw~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 146 TSIVLVAPIIGPLSGAALMHF--VHWKVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999998887 79999999988887776655555566654
No 8
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.84 E-value=2.8e-20 Score=135.80 Aligned_cols=130 Identities=22% Similarity=0.356 Sum_probs=105.8
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHH--------HHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSAN--------WLIALRFFEGLGEGTTFPALNTLLAQWVPPTE 73 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 73 (147)
+++.|+++||+|||+++.++.++.++++++++++ +++. .+++.|++.|++.|..++....+++|++|+++
T Consensus 74 ~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~--~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~ 151 (490)
T PRK10642 74 GLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI--PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK 151 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC
Confidence 5788999999999999999999999999999998 7765 37899999999999999999999999999999
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHh------hcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 74 RGKIGSFVFAGNQIGTVFSSFLSGFLLK------YTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
|++..++......+|..+++.+...+.. ....+||+.|++.+++.++ .+......||+|+
T Consensus 152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~ 217 (490)
T PRK10642 152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPA 217 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChh
Confidence 9999999888888888887766554432 1126999999997765554 3333445566543
No 9
>KOG2532|consensus
Probab=99.83 E-value=3.1e-20 Score=134.03 Aligned_cols=141 Identities=43% Similarity=0.891 Sum_probs=128.4
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
++++.|+++||+|.|+++.++.++.++.+++.+.+...+++.+++.|+++|++++..+|....+.++|.|+++|++..++
T Consensus 89 ~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ai 168 (466)
T KOG2532|consen 89 GQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAI 168 (466)
T ss_pred HHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHH
Confidence 36789999999999999999999999999999888666777889999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChh
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQR 142 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (147)
..++.++|.+++-.+++.+.+. ..||+..|++.+.+.++..+++.++..|+|++++...++
T Consensus 169 l~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~ 229 (466)
T KOG2532|consen 169 LTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEK 229 (466)
T ss_pred HHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHH
Confidence 9999999999999999999887 369999999999999999999999999988876554433
No 10
>KOG1330|consensus
Probab=99.83 E-value=2.8e-22 Score=141.11 Aligned_cols=130 Identities=18% Similarity=0.263 Sum_probs=120.9
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+|+.|+++||+.||+++.+|..++.++.+..++. ..++++.++|.+.|+|++...+..+++++|.+|.++|++.+++.
T Consensus 85 sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~if 162 (493)
T KOG1330|consen 85 SPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIF 162 (493)
T ss_pred HHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHh
Confidence 5789999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+.+..+|.++|..++..+.+.+. .||+.|+..+++.++..++.+++.+|.++
T Consensus 163 y~~ipvGsglG~vvgs~va~~~~-~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 163 YFAIPVGSGLGYVVGSVVASLTF-WWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred hhhcccccceeEEeeeeeccCcc-ceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 99999999999999998888753 49999999999999988888888777543
No 11
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.83 E-value=1.1e-19 Score=129.58 Aligned_cols=128 Identities=23% Similarity=0.218 Sum_probs=112.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+.++.+++...+... ++++.+++.|++.|++.+...+....++.|++|+++|+++.++.
T Consensus 72 ~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~ 149 (394)
T PRK10213 72 SLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA--NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVI 149 (394)
T ss_pred HHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH--ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHH
Confidence 5678999999999999999999999999888887 89999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
....++|..++|.+++.+.+. .+||+.|++.+++.++..+......||.+
T Consensus 150 ~~~~~~g~~ig~~l~~~l~~~--~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 150 FGAVSIALVIAAPLGSFLGEL--IGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999988 79999999987766654444333345543
No 12
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.82 E-value=2e-19 Score=129.52 Aligned_cols=128 Identities=20% Similarity=0.377 Sum_probs=113.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|++.||+|||+++.++.++..++.+++... ++++.+++.|++.|++.+..++....++.|++|+++|++.+++.
T Consensus 75 ~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~ 152 (434)
T PRK11663 75 KFVSGIVSDRSNARYFMGIGLIATGIINILFGFS--SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIW 152 (434)
T ss_pred HhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHH
Confidence 5789999999999999999999999999988887 88999999999999999998999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
+...++|..++|.+.+.+.+. .+||+.|++.+++.++..+...+..+|+|
T Consensus 153 ~~~~~~g~~~~~~~~~~l~~~--~gw~~~f~~~~i~~~~~~~~~~~~~~~~p 202 (434)
T PRK11663 153 NTAHNVGGALIPLVVGAIALH--YGWRYGMMIAGIIAIVVGLFLCWRLRDKP 202 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 999999999999999999887 79999999988776655554444555544
No 13
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.82 E-value=1.5e-19 Score=130.20 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=99.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccH--------HHHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSA--------NWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE 73 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 73 (147)
++++|+++||+|||+++..+.++.++++..+++. +++ ..+++.|++.|++.|..++...++++|++|+++
T Consensus 80 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 80 GWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL--PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 5678999999999999999999999999998887 544 368899999999999999999999999999999
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhh------cCCChhHHHHHHHHHHHHH
Q psy4740 74 RGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGILGVLW 121 (147)
Q Consensus 74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~ 121 (147)
|++..+..+.....|..+++.+...+... ...+||.+|++.+++.++.
T Consensus 158 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 158 KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 99999998888888888877765544321 1269999999887776553
No 14
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.82 E-value=3.2e-20 Score=129.75 Aligned_cols=131 Identities=24% Similarity=0.462 Sum_probs=123.3
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
.++.|.++||.++|..+..++++.++.++++++. ++...+.++.+++|..||..+|.+...+..++|+++||+..++.
T Consensus 81 Kf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs--~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siW 158 (448)
T COG2271 81 KFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS--PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIW 158 (448)
T ss_pred HHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEe
Confidence 4678999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHH--HHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740 82 FAGNQIGTVFSSFLS--GFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH 136 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (147)
+...|+|+.+.|.+. +.+..+ .+||..|++.+++.++..+..++..+|+|++.
T Consensus 159 n~shNiGGal~~~~~~la~~~~~--~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~ 213 (448)
T COG2271 159 NTSHNIGGALAPLVALLAFFAFH--GGWRAAFYFPGIIAIIVALILLFLLRDRPQSE 213 (448)
T ss_pred hhhhhcccchHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 999999999999999 777777 69999999999999999999999999988754
No 15
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.8e-19 Score=126.40 Aligned_cols=125 Identities=26% Similarity=0.319 Sum_probs=119.8
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
.++...+.||+.||++++....++.+++++++++ +|+..+++.|++.|+..|..++.......+..|+++|++++++.
T Consensus 65 ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA--p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv 142 (394)
T COG2814 65 APLLALLTGRLERRRLLLGLLALFIVSNLLSALA--PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALV 142 (394)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHH
Confidence 4677889999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
..+..++..+|..++.++-+. .|||..|+..+.+.++..+..+...|
T Consensus 143 ~~G~tlA~v~GvPLGt~ig~~--~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 143 FTGLTLATVLGVPLGTFLGQL--FGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999 89999999999999998888888888
No 16
>PRK09952 shikimate transporter; Provisional
Probab=99.82 E-value=2.1e-19 Score=129.64 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=100.4
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHH--------HHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSAN--------WLIALRFFEGLGEGTTFPALNTLLAQWVPPTE 73 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 73 (147)
+++.|+++||+|||+++..+.++.++++.++++. +++. .+++.|++.|++.+..++....+++|++|+++
T Consensus 81 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~ 158 (438)
T PRK09952 81 GVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLL--PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK 158 (438)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC
Confidence 3567999999999999999999999999999988 7765 58889999999999999999999999999999
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhh------cCCChhHHHHHHHHHHHH
Q psy4740 74 RGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~ 120 (147)
|++..+..+....+|..++..+...+... ...+||..|++.+++.++
T Consensus 159 rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 159 KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 99999999988889988887776665432 126999999988776544
No 17
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.82 E-value=9.2e-20 Score=127.16 Aligned_cols=126 Identities=33% Similarity=0.588 Sum_probs=109.2
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+.++.+++.....+. ++.+.+++.|++.|++.+...+....++.|++|+++|++.++..
T Consensus 49 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 126 (352)
T PF07690_consen 49 SPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGIL 126 (352)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--hhHHHHhhhccccccccccccccccccccccchhhhhhhccccc
Confidence 4678999999999999999999999986666655 66778999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
+...++|..++|.+++.+.+. .+||+.|++.+++.++..++...+.++
T Consensus 127 ~~~~~~g~~~g~~l~~~l~~~--~~~~~~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 127 SAGFSLGSILGPLLGGFLISY--FGWRWAFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCH--CHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred cchhhhhhhcccchhhhhhhc--cccccccccccchhhhhhhhHhhhhhh
Confidence 999999999999999999877 689999999999988876654444444
No 18
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.81 E-value=2e-19 Score=125.89 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=107.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc---cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
+++.|+++||+|||+++..+.++..++........ ..+++.+++.|++.|++.+...+...+++.|++|+++|++..
T Consensus 51 ~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (365)
T TIGR00900 51 SPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQAN 130 (365)
T ss_pred HHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 57889999999999999999888888777776651 118899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
++.+...++|..++|.+++.+.+. .+|++.|++.++..++..+.....
T Consensus 131 ~~~~~~~~~g~~~g~~l~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 131 SLSQAVRSLFYIVGPGIGGLMYAT--LGIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999888 799999998877666544444333
No 19
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.81 E-value=5.5e-19 Score=124.82 Aligned_cols=129 Identities=20% Similarity=0.373 Sum_probs=114.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+.+..+.++..++...+... ++++.+++.|++.|++.+...+....++.|.+|+++|++..++.
T Consensus 57 ~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (385)
T TIGR00710 57 QLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSIL 134 (385)
T ss_pred HHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 5688999999999999999999999999888887 88899999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+....+|..++|.+++.+.+. .+|+..|++.+...++..+...+..||+++
T Consensus 135 ~~~~~~g~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 135 MPVLALAPAVAPLLGGYILVW--LSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999998887 799999998888777666665555665443
No 20
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.81 E-value=5.2e-19 Score=125.53 Aligned_cols=128 Identities=16% Similarity=0.230 Sum_probs=109.8
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++.++.++.+++...+.+. ++++.+++.|++.|++.+..++....++.|++|+++|+++.++.
T Consensus 64 ~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 141 (405)
T TIGR00891 64 ALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA--PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLL 141 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHH
Confidence 5789999999999999999999999999888887 88999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
+....+|..+++.+.+.+.+..+.+||+.|++.++..++. +......||+
T Consensus 142 ~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~ 191 (405)
T TIGR00891 142 ISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEA 191 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCC
Confidence 9999999999999999888773335999998866555443 3333344554
No 21
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.81 E-value=4.2e-19 Score=125.95 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=113.4
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+..+.+++.+++... ++++.+++.|++.|++.+...+.....+.|++|+++|++.++..
T Consensus 55 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
T PRK10091 55 APIIALFSSRYSLKHILLFLVALCVIGNAMFTLS--SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGM 132 (382)
T ss_pred HHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHH
Confidence 5789999999999999999999999999999888 89999999999999999988888888999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
.....++..++|.+++.+.+. .+||+.|++.++..++..+......||.+
T Consensus 133 ~~~~~~g~~~g~~l~~~l~~~--~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 133 VSGMTVANLLGIPLGTYLSQE--FSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHhccHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999998887 79999999988877665555555566643
No 22
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.81 E-value=2.7e-19 Score=125.74 Aligned_cols=129 Identities=20% Similarity=0.330 Sum_probs=112.4
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
++++.|+++||+|||+.+..+.++..++.+++... ++++.+++.|++.|++.+...+....++.|++|+++|++..++
T Consensus 46 ~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 123 (379)
T TIGR00881 46 SKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSF 123 (379)
T ss_pred hhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEee
Confidence 36789999999999999999999999999998888 8899999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHH-HHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 81 VFAGNQIGTVFSS-FLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 81 ~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
.+....+|..++| .++..+.+. .+|++.|++.+.+.++..+...+..+|++
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 124 WNCSHNVGGGLLPPLVLFGIAEL--YSWHWVFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred hhccchhHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence 9999999999999 466666666 68999999888777666566565665544
No 23
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.80 E-value=4e-19 Score=130.11 Aligned_cols=132 Identities=20% Similarity=0.300 Sum_probs=109.2
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc----cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ----SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 77 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 77 (147)
++++|+++||+|||+++.++.++..++..++...... ++..+++.|++.|++.+...+....+++|++|+++|++.
T Consensus 73 ~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~ 152 (502)
T TIGR00887 73 QLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAM 152 (502)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHH
Confidence 5678999999999999999999999988887766211 267899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhh---------------------cCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 78 GSFVFAGNQIGTVFSSFLSGFLLKY---------------------TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~l~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+++.+....+|..+++.+...+... .+++||+++.+.+++.++. .+..++.||+|+
T Consensus 153 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~-~~~~~~lpESpr 229 (502)
T TIGR00887 153 MAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA-LYFRLTIPETPR 229 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH-HHHHHhCCCCHH
Confidence 9999999999999999888765431 1247999998887777654 444566788765
No 24
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.80 E-value=3.3e-19 Score=129.63 Aligned_cols=128 Identities=22% Similarity=0.362 Sum_probs=115.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
.++.|+++||+|||+.+..+.++..++..++... +++..+++.|++.|++.+...+....++.|.+|+++|+++.++.
T Consensus 54 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 131 (485)
T TIGR00711 54 IPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIW 131 (485)
T ss_pred HHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999888 89999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
.....+|..++|.+++.+.++ .+||+.|++.+.+.++..+...+..|+++
T Consensus 132 ~~~~~~g~~~g~~~~~~l~~~--~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 132 GLTVLVAPALGPTLGGWIIEN--YHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred HHHHHHHhhhhhccHhHhccC--cCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 999999999999999999887 79999999988877766666555555543
No 25
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.80 E-value=5.1e-19 Score=126.16 Aligned_cols=128 Identities=26% Similarity=0.378 Sum_probs=111.8
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+.++..+..+.+... ++++.+++.|++.|++.+...+....++.|++|+++|++.+++.
T Consensus 67 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 144 (406)
T PRK11551 67 ALLGGRLADRIGRKRILIVSVALFGLFSLATAQA--WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLM 144 (406)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 5688999999999999999998888888888777 88999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
+....+|..+++.++..+.+. .+|+..|++.++..++..+......||++
T Consensus 145 ~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 145 YCGVPFGGALASVIGVLAAGD--AAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHccc--cCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 999999999999998877766 68999999887766665555555566654
No 26
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.79 E-value=1.9e-18 Score=122.84 Aligned_cols=128 Identities=22% Similarity=0.342 Sum_probs=112.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+.+..+.+...++...+... ++.+.+++.|++.|++.+...+....++.|.+|+++|++..+..
T Consensus 55 ~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 132 (392)
T PRK10473 55 MLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA--ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLL 132 (392)
T ss_pred HHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 5789999999999999999999999998888777 78888899999999999988888999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
+....++..++|.+++.+.+. .+|++.|++.+...++..+......||++
T Consensus 133 ~~~~~i~~~~~~~i~~~l~~~--~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 133 NGITCIIPVLAPVLGHLIMLK--FPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhC--cChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999888776 69999999988877766666555556543
No 27
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.79 E-value=1.6e-18 Score=122.49 Aligned_cols=128 Identities=25% Similarity=0.404 Sum_probs=113.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+.++.+++...+... ++++.+++.|++.|++.+...+....++.|.+|+++|++.+++.
T Consensus 43 ~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (377)
T PRK11102 43 QLFYGPMADSFGRKPVILGGTLVFALAAVACALA--QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFV 120 (377)
T ss_pred HHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5688999999999999999999999999988887 88899999999999999988888999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
+....+|..++|.+++.+.+. .+|++.|++.+.+.++..+...+..||++
T Consensus 121 ~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 121 TLVMTIAPLLAPIIGGWLLVW--FSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--cChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 999999999999999999887 79999999888877766555555566543
No 28
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.79 E-value=1.8e-18 Score=121.52 Aligned_cols=126 Identities=24% Similarity=0.305 Sum_probs=107.7
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
++++.|+++||+|||+++..+.++.+++...+... ++++.+++.|++.|++.+..++.....+.|++| ++|+++.+.
T Consensus 54 ~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 130 (377)
T TIGR00890 54 SMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA--DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGI 130 (377)
T ss_pred HhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHH
Confidence 36889999999999999999999999999998888 899999999999999999888888888888887 679999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
.....++|..+++.+.+.+.+. .+||+.|++.+++.++..+...+..++
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 131 IIGGYGLGSFILSPLITSVINL--EGVPAAFIYMGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred HHHhcchhHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHheec
Confidence 9999999988777777666665 689999999888877766665555544
No 29
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.79 E-value=8.6e-19 Score=127.38 Aligned_cols=133 Identities=20% Similarity=0.313 Sum_probs=106.8
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc----------cccHHHHHHHHHHHhhccccCcccHHHHhhhhcC
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA----------RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP 70 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 70 (147)
+++++|+++||+|||+++..+.++..++...++... ...+..+++.|++.|++.+...+....+++|++|
T Consensus 71 ~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~ 150 (479)
T PRK10077 71 GGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAP 150 (479)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCC
Confidence 357899999999999999999999888877665420 1224567899999999999999999999999999
Q ss_pred CcchhHHHHHHHhhhhhHHHHHHHHHHHHHhh------cCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 71 PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 71 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+++|++++++.+....+|..+++.++..+... ...+||+.|++.+++.++..+. .++.||+|+
T Consensus 151 ~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~ 219 (479)
T PRK10077 151 AHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPR 219 (479)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcH
Confidence 99999999999999999999988776655421 1258999999988777765443 556677653
No 30
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.78 E-value=5.9e-18 Score=120.58 Aligned_cols=117 Identities=13% Similarity=0.254 Sum_probs=103.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+..+.+++...++++ ++++.+++.|++.|++.+...+.....+.|++| ++|++.++.+
T Consensus 61 ~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a--~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~ 137 (393)
T PRK09705 61 ALAGSWLHQHVSERRSVAISLLLIAVGALMRELY--PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLW 137 (393)
T ss_pred hhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC--cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHH
Confidence 6789999999999999999999999999999998 899999999999999999999999999999997 7899999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF 122 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 122 (147)
......|..+++.+++.+.++. .+||..+...++..++..
T Consensus 138 ~~~~~~g~~~g~~~~~~l~~~~-~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 138 SAALMGGGGLGAAITPWLVQHS-ETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence 9999999999999999887762 279988776655554433
No 31
>TIGR00898 2A0119 cation transport protein.
Probab=99.78 E-value=1.6e-18 Score=126.86 Aligned_cols=126 Identities=22% Similarity=0.415 Sum_probs=110.4
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
++++.|+++||+|||+++.++.++..++.+...+. ++++.+++.|++.|++.+...+....++.|++|+++|++..++
T Consensus 143 g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~ 220 (505)
T TIGR00898 143 GSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS--PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTL 220 (505)
T ss_pred HHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHH
Confidence 35789999999999999999999999999988888 8999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
......+|..+++.++..+ .+||+.+++.+++.++..+.. ++.||+|+
T Consensus 221 ~~~~~~~g~~~~~~~~~~~-----~~wr~~~~~~~i~~~~~~~~~-~~~~esp~ 268 (505)
T TIGR00898 221 IQVFFSLGLVLLPLVAYFI-----PDWRWLQLAVSLPTFLFFLLS-WFVPESPR 268 (505)
T ss_pred HHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHH-HhcCCChH
Confidence 9999999999998887665 249999999888877655554 56676653
No 32
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.78 E-value=7.8e-19 Score=127.55 Aligned_cols=134 Identities=20% Similarity=0.208 Sum_probs=109.8
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc---ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA---ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 77 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 77 (147)
++++.|+++||+|||+++..+.++.++..+..+.. ..++++.+++.|++.|++++...+....+++|++|+++|+++
T Consensus 80 ~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a 159 (467)
T PRK09556 80 GKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRF 159 (467)
T ss_pred HHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeee
Confidence 36789999999999999988888777776655442 127889999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 78 GSFVFAGNQIGTVFSSFLSGFLLKYT-DGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+++.....++|..+++.+...+.+.. ..+|+..|.+.+++.++..+..+++.+++|+
T Consensus 160 ~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~ 217 (467)
T PRK09556 160 LGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE 217 (467)
T ss_pred EEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 99999999999999999887766642 2369998888887777666666666565554
No 33
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.77 E-value=2e-18 Score=123.80 Aligned_cols=113 Identities=23% Similarity=0.339 Sum_probs=103.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++.++.+..+++....... ++++.+++.|++.|++.+..++....++.|.+|+++|+++.++.
T Consensus 70 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 147 (426)
T PRK12307 70 GALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA--SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFL 147 (426)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHH
Confidence 5688999999999999999999999999988888 88999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG 118 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 118 (147)
.....+|..+++.+.+.+.+. .+||+.|++.....
T Consensus 148 ~~~~~lg~~~~~~l~~~l~~~--~~w~~~f~i~~~~~ 182 (426)
T PRK12307 148 VSGFGIGNIIAAYFMPSFAEA--YGWRAAFFVGLLPV 182 (426)
T ss_pred HHHHhHHHHHHHHHHHHHccc--CCHHHHHHHHHHHH
Confidence 999999999999988888776 69999998755443
No 34
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.77 E-value=1.3e-18 Score=131.42 Aligned_cols=130 Identities=18% Similarity=0.318 Sum_probs=111.8
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
++++|+++||+|||+.++++.++.+++.+++++. ++++.+++.|++.|++.+...+....+++|++|+++|++.+++.
T Consensus 219 ~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa--~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~ 296 (742)
T TIGR01299 219 AFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV--QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWL 296 (742)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 5789999999999999999999999999888888 88999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcC-----------CChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTD-----------GDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
.....+|.++++.++..+....+ .+||+.+++.+++.++. ++..++.||+|+
T Consensus 297 ~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPr 359 (742)
T TIGR01299 297 CMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPR 359 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHH
Confidence 99999999999988776654311 36999988887776654 455566788764
No 35
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.77 E-value=6.8e-18 Score=120.55 Aligned_cols=128 Identities=18% Similarity=0.222 Sum_probs=111.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|.++||+|||+++..+.....++....... ++++.+++.|++.|++.+...+.....+.|.+|+++|.+..++.
T Consensus 65 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 142 (406)
T PRK15402 65 QWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA--QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALM 142 (406)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 4678999999999999999999999988888777 78889999999999999888888889999999999999999998
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
.....++..++|.+++.+.+. .+||+.|++.++..++..+......||++
T Consensus 143 ~~~~~~~~~~g~~i~~~l~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 143 ANVALLAPLLGPLVGAALIHV--LPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--cCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 888888999999999998887 68999999888887766555555556554
No 36
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.77 E-value=1.1e-17 Score=102.27 Aligned_cols=125 Identities=29% Similarity=0.482 Sum_probs=109.3
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|++.||+|||+.+..+.....++.+..... ++++.+.+.+++.|++.+...+....++.|.+|+++|++..+..
T Consensus 15 ~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T TIGR00880 15 SPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLM 92 (141)
T ss_pred HhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHH
Confidence 5678999999999999999988888888877776 78888889999999999988899999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
+....+|..++|.+.+.+.+. .+|++.+++.+...++..+...+..|
T Consensus 93 ~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 93 SAGIALGPLLGPPLGGVLAQF--LGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHhHHHHHHHhHHhHHHHhcc--cchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999877 68999999888777766555555543
No 37
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.77 E-value=1.2e-17 Score=119.27 Aligned_cols=125 Identities=25% Similarity=0.294 Sum_probs=109.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+.++.+++.+.+... ++++.+++.|++.|++.+...+...+.+.|.+|+++|++++++.
T Consensus 63 ~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 140 (400)
T PRK11646 63 GIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLL 140 (400)
T ss_pred HhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4678999999999999999999999999988877 78888999999999998888888899999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
+...++|..++|.+++.+. . .+|++.|++.+...++..+...+..||
T Consensus 141 ~~~~~~g~~ig~~l~g~l~-~--~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 141 MMQDSAGAVIGALLGSWLL-Q--YDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH-H--hhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999998 4 489999998887766655444444554
No 38
>PRK15075 citrate-proton symporter; Provisional
Probab=99.76 E-value=7.5e-18 Score=121.42 Aligned_cols=114 Identities=22% Similarity=0.341 Sum_probs=97.3
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHH--------HHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSAN--------WLIALRFFEGLGEGTTFPALNTLLAQWVPPTE 73 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 73 (147)
+++.|+++||+|||+.+..+..+..+++..+++. +++. .+++.|++.|++.+...+....+++|++|+++
T Consensus 73 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~ 150 (434)
T PRK15075 73 AIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV--PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR 150 (434)
T ss_pred HHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc
Confidence 4577999999999999999999999999999888 6655 46889999999999999989999999999999
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhh------cCCChhHHHHHHHHH
Q psy4740 74 RGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGIL 117 (147)
Q Consensus 74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~ 117 (147)
|++.+++.....++|..+++.+++.+... ...+||+.|++....
T Consensus 151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~ 200 (434)
T PRK15075 151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLI 200 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHH
Confidence 99999999988888888888887765321 126999999875443
No 39
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.76 E-value=1.7e-17 Score=120.11 Aligned_cols=132 Identities=18% Similarity=0.270 Sum_probs=105.3
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc--cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
++++.|+++||+|||+++..+.++.++..+.+.+.. ..++..+++.|++.|++.+..++.....+.|++|+++|++++
T Consensus 79 ~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~ 158 (452)
T PRK11273 79 SKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIV 158 (452)
T ss_pred HHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHH
Confidence 367899999999999999999999888888776642 136778889999999999988888888899999999999999
Q ss_pred HHHHhhhhhHHH-HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 79 SFVFAGNQIGTV-FSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 79 ~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
++.+...++|.. .+|+....+... .+||+.|++.+.+.++..+...++.||+|+
T Consensus 159 ~~~~~~~~~g~~~~~~l~~~~~~~~--~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~ 213 (452)
T PRK11273 159 SVWNCAHNVGGGLPPLLFLLGMAWF--NDWHAALYMPAFAAILVALFAFAMMRDTPQ 213 (452)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHccCCHh
Confidence 999999888874 455544444333 489999999888777665666666666543
No 40
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.76 E-value=2.5e-17 Score=120.25 Aligned_cols=115 Identities=18% Similarity=0.232 Sum_probs=99.8
Q ss_pred Ccchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhccccc-HHHHHHHHHHHhhccccCcccHHHHhhhhcCCc--chhHH
Q psy4740 2 HIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQS-ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT--ERGKI 77 (147)
Q Consensus 2 ~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~r~~~ 77 (147)
.+++|+++|| +|||+++.++.++..++.+.+... .+ ...+++.+++.|++.|...+...+++.|.+|++ +|+.+
T Consensus 67 ~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~--~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~ 144 (489)
T PRK10207 67 ISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS--LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGA 144 (489)
T ss_pred HhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcc
Confidence 3578999999 999999999999999999998876 43 334557899999999999999999999999887 45778
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740 78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (147)
+++.+...++|..++|.+++.+.++ .||++.|++.++...+
T Consensus 145 ~~~~~~~~nig~~~g~~l~g~l~~~--~gw~~~F~i~~i~~~~ 185 (489)
T PRK10207 145 FTLFYMSINIGSLISLSLAPVIADK--FGYSVTYNLCGAGLII 185 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHH
Confidence 9999999999999999999999988 7999999986554433
No 41
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.76 E-value=1.3e-17 Score=118.71 Aligned_cols=129 Identities=20% Similarity=0.248 Sum_probs=110.4
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+.+..+.....++.+.+... ++++.+++.|++.|++.+...+....+..|.+++++|++..+..
T Consensus 60 ~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (394)
T PRK11652 60 QLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA--HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLL 137 (394)
T ss_pred HHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5688999999999999999999999988888777 88999999999999988877777778889999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+....++..++|.+++.+.+. .+||+.|++.++..++..+...+..||+++
T Consensus 138 ~~~~~~~~~~g~~i~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 138 NMGILVSPLLAPLIGGLLTTL--FGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 999999999999999998887 689999999877766555555555566443
No 42
>PRK03699 putative transporter; Provisional
Probab=99.76 E-value=2.7e-17 Score=117.21 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=104.9
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|++.||+|||+++..+.++.+++..++... ++++.+++.|++.|++.+...+.....+.|.+|+++|+..++..
T Consensus 59 ~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 136 (394)
T PRK03699 59 IFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS--HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFT 136 (394)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHH
Confidence 4678999999999999999999999999888887 88889999999999999988888999999999999999999998
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW 125 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (147)
+....++..++|.+.+.+.+.. .+||+.|.+.+.+.++..+..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~-~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 137 DSFFSMAGMIFPIIAAYLLARS-IEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999888776531 589999998887766544433
No 43
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.76 E-value=3.1e-18 Score=123.53 Aligned_cols=129 Identities=24% Similarity=0.230 Sum_probs=106.4
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
++++|+++||+|||+++..+.++..++..++.... ..+++.+++.|++.|++.+...+....++.|++|+++|++.+++
T Consensus 88 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 167 (481)
T TIGR00879 88 ALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSL 167 (481)
T ss_pred HHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhH
Confidence 57899999999999999999999998888875542 23456889999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHH---HHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 81 VFAGNQIGTVFSSFLS---GFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
.+....+|..+++.++ ....+. .+||+.|++.+...++. +...++.||+|
T Consensus 168 ~~~~~~~G~~~~~~~~~~~~~~~~~--~~w~~~f~~~~~~~~~~-~~~~~~l~~~~ 220 (481)
T TIGR00879 168 YQLAITFGILVAYGFGSGKVSLNNT--LGWRIPLGLQLIPAGLL-FLGLFFLPESP 220 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC--ccHHHHHHHHHHHHHHH-HHHHhcCCCCh
Confidence 9999999999999998 444344 69999999966655543 34445556654
No 44
>KOG0255|consensus
Probab=99.75 E-value=7.1e-18 Score=124.02 Aligned_cols=126 Identities=25% Similarity=0.371 Sum_probs=111.0
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
|++++|.++||+|||++++++.++..++....+++ +|+..+++.|++.|++.++.......++.|+.++++|+.+..+
T Consensus 134 G~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a--~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~ 211 (521)
T KOG0255|consen 134 GSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA--PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL 211 (521)
T ss_pred HHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH
Confidence 45788999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
......++.+++...+.+.. +||+.+++..++..+.++. +++.+|+|+
T Consensus 212 -~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~-~~l~~Es~r 259 (521)
T KOG0255|consen 212 -GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLL-WFLPPESPR 259 (521)
T ss_pred -HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHH-HHccCcChH
Confidence 77777777778777777754 7999999999998876555 555557664
No 45
>PRK10504 putative transporter; Provisional
Probab=99.75 E-value=1.9e-17 Score=120.26 Aligned_cols=127 Identities=23% Similarity=0.335 Sum_probs=111.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
++++|+++||+|||+++..+..+.+++...+... ++++.+++.|++.|++.+...+.....+.|.+|+++|++..+..
T Consensus 62 ~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (471)
T PRK10504 62 LPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFV 139 (471)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4678999999999999999988888888887777 78889999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
....++|..++|.+++.+.+. .+||+.|++......+..+......|+.
T Consensus 140 ~~~~~~g~~~g~~~~g~l~~~--~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 140 TLPGQVGPLLGPALGGLLVEY--ASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHhhhHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999888 7999999998877766555555555543
No 46
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.75 E-value=2.5e-17 Score=118.86 Aligned_cols=133 Identities=20% Similarity=0.335 Sum_probs=108.6
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc--cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
++++.|+++||+|||+.+..+.++.+++.+.+...+ ..++..+.+.|++.|++.+..++.....+.|++|+++|++++
T Consensus 77 ~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~ 156 (438)
T TIGR00712 77 SKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIV 156 (438)
T ss_pred hhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHH
Confidence 367899999999999999999888888887765542 135667788899999999999888899999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
++.+...++|..+++.+.+...+.. .+||..|++.+++.++..+...+..||+|+
T Consensus 157 ~~~~~~~~~g~~~~~~l~~~~~~~~-~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~ 211 (438)
T TIGR00712 157 SIWNCAHNIGGGIPPLLVLLGMAWF-NDWHAALYFPAICAIIVALFAFAMMRDTPQ 211 (438)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 9999999999999988776544421 589999999888877766666666666543
No 47
>KOG2533|consensus
Probab=99.75 E-value=7.5e-18 Score=122.27 Aligned_cols=140 Identities=24% Similarity=0.439 Sum_probs=122.4
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
++++++.+.||++..+.+....+.+.+..++.... +|++.+++.|+++|+.++..+|....+++.++.+++|+..+++
T Consensus 97 ~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~--~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~ 174 (495)
T KOG2533|consen 97 GQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV--HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGI 174 (495)
T ss_pred HHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHH
Confidence 46889999999998888887777777777666666 8999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhc----CCChhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChh
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYT----DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQR 142 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (147)
+++..++|++++.+++..+.+.. ..||||.|++.+++.++..+..++.+|+.|++.+...++
T Consensus 175 ~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ 240 (495)
T KOG2533|consen 175 WYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDE 240 (495)
T ss_pred HHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchH
Confidence 99999999999999998865421 258999999999999999999999999988865444433
No 48
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.75 E-value=2.6e-17 Score=115.77 Aligned_cols=129 Identities=22% Similarity=0.292 Sum_probs=101.2
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc-cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ-SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
+++.|+++||+|||+.+..+.++..++...+... + +++.+++.|++.|++.+. .+....+++|++|+++|++..++
T Consensus 54 ~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~ 130 (366)
T TIGR00886 54 RIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA--VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGL 130 (366)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHH
Confidence 5789999999999999999999999999988888 7 899999999999998654 56678899999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhc--------CCChhHHHH-HHHHHHHHHHHHHHhhccCCC
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYT--------DGDWPEIFY-LFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 133 (147)
.....++|..+++.+++.+.... ..+||+.|+ ..++...+..+......+|+|
T Consensus 131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (366)
T TIGR00886 131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTP 192 (366)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCC
Confidence 99888888888887776655421 147999984 434444444444444445544
No 49
>PRK10054 putative transporter; Provisional
Probab=99.75 E-value=1.6e-17 Score=118.46 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=105.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++.++.+...++.....+. ++++.+++.+.+.|.+.+...+....+..|..|+++|++.+++.
T Consensus 60 ~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 137 (395)
T PRK10054 60 SLGFGILADKFDKKRYMLLAITAFASGFIAIPLV--NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLN 137 (395)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHH
Confidence 5789999999999999999998888888887777 77888888888888877777788889999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
+...++|..++|.+++.+.+. +|+..|++.++..++..+...+..++
T Consensus 138 ~~~~~lg~~igp~l~~~l~~~---g~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 138 YTMLNIGWTVGPPLGTLLVMQ---SINLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---ccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988754 89999998887776655544444444
No 50
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.75 E-value=4e-17 Score=116.37 Aligned_cols=126 Identities=25% Similarity=0.271 Sum_probs=107.9
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+.+..+.+..+++...+... ++++.+++.|++.|++.+ ..+.....+.|.+|+++|++..++.
T Consensus 71 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (408)
T PRK09874 71 SPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA--QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTL 147 (408)
T ss_pred HHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHH
Confidence 5678999999999999999998888888887776 788999999999998755 4567778889999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
+....+|..++|.+++.+.+. .+|++.|++.++..++..+...+..+|.
T Consensus 148 ~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 148 STGGVSGALLGPLAGGLLADS--YGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999887 6899999998887776666555555554
No 51
>TIGR00895 2A0115 benzoate transport.
Probab=99.75 E-value=8.5e-18 Score=118.94 Aligned_cols=128 Identities=33% Similarity=0.568 Sum_probs=111.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+.+..+.++..++..++... ++++.+++.+++.|++.+...+....++.|.+|+++|++.+++.
T Consensus 69 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 146 (398)
T TIGR00895 69 ALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLM 146 (398)
T ss_pred HHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhH
Confidence 4678999999999999999999888888888777 78888999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
.....+|..+++.+.+.+.+. .+|+..|++.++...+..+......|+++
T Consensus 147 ~~~~~~g~~~~~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 147 FCGYPIGAAVGGFLAGWLIPV--FGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred hhHHHHHHHHHHHHHHHHhhc--ccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 999999999999999999887 78999999886665555555555555543
No 52
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.75 E-value=2.8e-17 Score=116.04 Aligned_cols=118 Identities=26% Similarity=0.392 Sum_probs=100.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHH--------HHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSAN--------WLIALRFFEGLGEGTTFPALNTLLAQWVPPTE 73 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 73 (147)
+++.|+++||+|||+++..+.++..++..++... +++. .+++.|++.|++.+...+....++.|.+|+++
T Consensus 52 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 129 (394)
T TIGR00883 52 AIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL--PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK 129 (394)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC--CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc
Confidence 5788999999999999999999999999988887 5543 57889999999999999999999999999999
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhh------cCCChhHHHHHHHHHHHHH
Q psy4740 74 RGKIGSFVFAGNQIGTVFSSFLSGFLLKY------TDGDWPEIFYLFGILGVLW 121 (147)
Q Consensus 74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~ 121 (147)
|++..+..+....+|..+++.+...+... ...+||+.|++.+++.++.
T Consensus 130 r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 183 (394)
T TIGR00883 130 RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG 183 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH
Confidence 99999999999999999998887665431 1258999998877665543
No 53
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.75 E-value=1.6e-17 Score=118.35 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=102.2
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++.++.++..++++.+... .+. ++.|++.|++.+...|...+++.|++|+++|+++.++.
T Consensus 55 ~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~--~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~ 129 (393)
T PRK11195 55 APFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG--IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWM 129 (393)
T ss_pred HhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 5789999999999999999999988888776665 443 67899999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
+...+++..++|.+++.+.+. .|+..+.+.+...++.. ...+..||.+
T Consensus 130 ~~~~~~~~~~Gp~lgG~l~~~---~~~~~~~i~~~~~~~~~-~~~~~l~~~~ 177 (393)
T PRK11195 130 EGSTIAAILLGTVLGGALADP---HAEAALAVCALIYLLAA-LFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence 999999999999999999887 47777776665544333 3334455543
No 54
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.75 E-value=5.4e-17 Score=118.25 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=104.9
Q ss_pred Ccchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc---hhHH
Q psy4740 2 HIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE---RGKI 77 (147)
Q Consensus 2 ~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~ 77 (147)
++++|+++|| +|||+++.++.++.+++.+..+.. +++..+++.+.+.|++.+...+...++++|++|+++ |+++
T Consensus 65 ~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~--~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~ 142 (475)
T TIGR00924 65 TSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS--IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG 142 (475)
T ss_pred HhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc--ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccce
Confidence 5688999999 899999999999999999888877 677788889999999999999999999999998764 8889
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q psy4740 78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW 125 (147)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (147)
.++.+...++|..++|.+++.+.+. .+|++.|++.++..++..+..
T Consensus 143 ~~~~~~~~niG~~ig~~l~g~l~~~--~g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 143 FTLFYMSINIGSFISPLLAGVIAEN--YGYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887 689999998876555443333
No 55
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.74 E-value=4.7e-17 Score=118.61 Aligned_cols=130 Identities=18% Similarity=0.244 Sum_probs=103.2
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+.++.+++..+++.. +++..+++.|++.|++.+... ....+++|++|+++|++++++.
T Consensus 88 ~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~ 164 (476)
T PLN00028 88 RLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIA 164 (476)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHH
Confidence 5788999999999999999999988888888877 788888999999999887643 4566789999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHh----h---cCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLK----Y---TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+...++|..+++.+...+.. . ...+||+.|++.+++.++..+...++.++.|+
T Consensus 165 ~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~ 224 (476)
T PLN00028 165 AGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD 224 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC
Confidence 88778888777766654432 1 01389999999988887766666655555443
No 56
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.73 E-value=6.3e-17 Score=115.26 Aligned_cols=118 Identities=21% Similarity=0.194 Sum_probs=99.4
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc------cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA------RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 74 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 74 (147)
++++.|+++||+|||+++..+.++.+++...+.... ..++..+++.|++.|++.+...+....++.|..|+++|
T Consensus 67 ~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r 146 (399)
T PRK05122 67 SRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHT 146 (399)
T ss_pred hchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhh
Confidence 368999999999999999999888777665544321 02466788999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (147)
++..++.......|..+++.+++.+.+. .+|+..+++..+..++
T Consensus 147 ~~~~~~~~~~~~~g~~~g~~l~~~l~~~--~g~~~~~~~~~~~~~~ 190 (399)
T PRK05122 147 GRVISWNGIATYGALAIGAPLGVLLYHW--GGLAGLGLLIMLLALL 190 (399)
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 7899988776665443
No 57
>KOG0254|consensus
Probab=99.73 E-value=1.7e-17 Score=121.85 Aligned_cols=130 Identities=21% Similarity=0.212 Sum_probs=113.4
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++|++|||+.++++.+.+.++.++++.+ ++..+++++|++.|++.|......+.+++|..|++.||...+..
T Consensus 106 ~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a--~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~ 183 (513)
T KOG0254|consen 106 SLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA--PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLY 183 (513)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHH
Confidence 5688999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS 135 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
+....+|..++..++... ++...+||..+.+..++.++..+. .++.||+|+.
T Consensus 184 ~l~~~~Gi~~~~~~~~~~-~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~ 235 (513)
T KOG0254|consen 184 QLFITIGILLGYCINYGT-SKVYAGWRIPLGLALIPAVILALG-MLFLPESPRW 235 (513)
T ss_pred HHHHHHHHHHHHHHhhhh-ccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHH
Confidence 999998888884444433 331138999999999998887777 7778877753
No 58
>PRK11043 putative transporter; Provisional
Probab=99.73 E-value=7.1e-17 Score=115.13 Aligned_cols=125 Identities=20% Similarity=0.274 Sum_probs=108.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
++++|+++||+|||+.+..+..+..++...+... ++++.+++.|++.|++.+...+.....+.|.+|++++++..+..
T Consensus 58 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (401)
T PRK11043 58 QLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV--ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATI 135 (401)
T ss_pred HHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 5789999999999999999999988888888777 88999999999999988877777788899999999999999998
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
.....++..++|.+++.+.+. .+|++.|++.+...++..+......+
T Consensus 136 ~~~~~~~~~~g~~i~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ 182 (401)
T PRK11043 136 MPLVALSPALAPLLGAWLLNH--FGWQAIFATLFAITLLLILPTLRLKP 182 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888899999999999999887 79999999888877766555444433
No 59
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.73 E-value=9.8e-17 Score=116.34 Aligned_cols=124 Identities=20% Similarity=0.258 Sum_probs=104.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHH-HHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIA-LRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
.++.|+++||+|||++++.+.++..++++.+++. ++++.+++ .|++.|++.+...+.....+.++++ ++|+++.++
T Consensus 71 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~ 147 (455)
T TIGR00892 71 GPISSILVNRFGCRPVVIAGGLLASLGMILASFS--SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGL 147 (455)
T ss_pred hHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHH
Confidence 4688999999999999999999999998888887 77777654 4688999998777777788889986 789999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
.+....+|..++|.+.+.+.+. .+||+.|++.+++.++..+..++..+
T Consensus 148 ~~~~~~~g~~~~~~l~~~l~~~--~gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 148 AMAGSPVFLSTLAPLNQYLFES--FGWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HHhcccHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998887 69999999998887765554444443
No 60
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.73 E-value=1.2e-16 Score=112.69 Aligned_cols=129 Identities=19% Similarity=0.080 Sum_probs=102.0
Q ss_pred CcchhhhhhhhcchHHHHH-HHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH--H
Q psy4740 2 HIPGGLLAQKFGGKHTLGF-GILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI--G 78 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~--~ 78 (147)
+++.|+++||+|||+.++. +.....+....+... ++++.+++.|++.|...+...|....+..|..|+++|.+. .
T Consensus 50 ~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 127 (375)
T TIGR00899 50 SQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN--RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFS 127 (375)
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHH
Confidence 4678999999999887654 555556666677776 7888888889888887777778788888898887777654 5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+......++|..++|.+++.+.+. .+||+.|++.+...++..+..++..||.|+
T Consensus 128 ~~~~~~~~~g~~ig~~~~~~l~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T TIGR00899 128 SVMRAQISLAWVIGPPLAFWLALG--FGFTVMFLTAALAFVLCGVLVWLFLPSYPR 181 (375)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 777778889999999999999887 799999999988877666666665666544
No 61
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.72 E-value=4.4e-17 Score=118.99 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=103.0
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+.+..+.++.+++...+... ++++.+++.|++.|++.+..++....++.|.+|+++|++.+++.
T Consensus 72 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 149 (496)
T PRK03893 72 GLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA--PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFL 149 (496)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4678999999999999999999999999888887 88999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG 118 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 118 (147)
....++|..++|.+.+.+.+. .+||+.|++.....
T Consensus 150 ~~~~~~g~~~~~~~~~~l~~~--~~w~~~f~~~~~~~ 184 (496)
T PRK03893 150 ISGFSIGAVVAAQVYSLVVPV--WGWRALFFIGILPI 184 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHH
Confidence 999999999999999998887 79999988754443
No 62
>KOG3764|consensus
Probab=99.72 E-value=2.6e-17 Score=114.55 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=121.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc-hhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE-RGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~ 80 (147)
+++.|.+.||+|+|..++.|.++....++++++. .+++++++.|.++|++.++......+.++|.+|+++ |++++|+
T Consensus 123 np~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGi 200 (464)
T KOG3764|consen 123 NPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGI 200 (464)
T ss_pred cccchhhHHHhccccHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHH
Confidence 6789999999999999999999999999999999 999999999999999999999999999999998865 7999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH 136 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (147)
.-.+.++|-+++|.++|.+++. .|.+.+|.+.+++.++...+.++..++++.++
T Consensus 201 algfislG~lvgPpfGGilYe~--~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 201 ALGFISLGVLVGPPFGGILYEF--AGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred HHHHHhccceecCCcccchHhh--cCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 9999999999999999999999 89999999999999998888888777655444
No 63
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.72 E-value=1.6e-16 Score=110.45 Aligned_cols=120 Identities=35% Similarity=0.649 Sum_probs=109.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+.+..+.+...++....... ++++.+++.|++.|++.+...+....++.|.+|+|+|++.++..
T Consensus 51 ~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (352)
T cd06174 51 SLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLF 128 (352)
T ss_pred HHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHH
Confidence 5789999999999999999999999999988887 88999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW 125 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (147)
+...++|..++|.+++.+.+. .+|++.+++.+...++..+..
T Consensus 129 ~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 129 SAGFGLGALLGPLLGGLLAES--LGWRWLFLILAILGLLLALLL 170 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888 679999998887776654443
No 64
>PRK12382 putative transporter; Provisional
Probab=99.71 E-value=2e-16 Score=112.49 Aligned_cols=116 Identities=20% Similarity=0.139 Sum_probs=95.3
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHh---hhc---ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLT---PFA---ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 74 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 74 (147)
+++++|+++||+|||+.+..+.+...++.... ... ...+++.+++.|++.|++.+...+...+++.|.+|+++|
T Consensus 67 ~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r 146 (392)
T PRK12382 67 TRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHS 146 (392)
T ss_pred HhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 36889999999999999998877766554322 111 124678899999999999998888888899999999999
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG 118 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 118 (147)
+++++..+...+.|..++|.+++.+.+. .+|+..+.+..+..
T Consensus 147 ~~a~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~~~~~~~~~ 188 (392)
T PRK12382 147 GKVMSWNGMAMYGALAAGAPLGLLLHSH--FGFAALALTTMVLP 188 (392)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhc--cChHHHHHHHHHHH
Confidence 9999999999999999999999998887 68998776654443
No 65
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.69 E-value=2.7e-16 Score=119.06 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=105.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+.++.++++++.++. ++...+++.+++.+++.+..++....+++|++|++.|++++|+.
T Consensus 612 ~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~--~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~ 689 (742)
T TIGR01299 612 NIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG--NSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFL 689 (742)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4678999999999999999999999998888777 66667777788888887788888999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
++...+|.+++|.+++.+.+. +...+|++.+++.++..++.. +.||+..
T Consensus 690 ~~~~rlGaiigp~i~g~L~~~---~~~~pf~i~a~~lll~~ll~~-~LPET~~ 738 (742)
T TIGR01299 690 NALCKAAAVLGILIFGSFVGI---TKAAPILFASAALACGGLLAL-KLPDTRG 738 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHH-hCCCCcc
Confidence 999999999999999988776 456677777777666555544 4466543
No 66
>KOG2615|consensus
Probab=99.69 E-value=1.4e-16 Score=110.40 Aligned_cols=97 Identities=20% Similarity=0.310 Sum_probs=88.9
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
++.+|.++||+|||++++.+.+..++...+.+.+ .|+..++..|++.|+.-+ +....-++++|..++++|+.+++.+
T Consensus 85 S~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--~~F~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v 161 (451)
T KOG2615|consen 85 SPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--RNFAAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLV 161 (451)
T ss_pred hhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeee
Confidence 5789999999999999999999999999998888 898677777999999876 4566899999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHh
Q psy4740 82 FAGNQIGTVFSSFLSGFLLK 101 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~ 101 (147)
....++|-++||++++.+..
T Consensus 162 ~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 162 GTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ehhhhcchhhcchhhhHHHh
Confidence 99999999999999999887
No 67
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.68 E-value=8e-16 Score=110.55 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=108.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc--cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ--SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
+++.|+++||+|+|+++..+.++..+........... +...+++.+++.|++.+...+....++.|.+|+++|+++++
T Consensus 268 ~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g 347 (418)
T TIGR00889 268 ILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQG 347 (418)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4578899999999999999998888876665553111 24556778899999988888888899999999999999999
Q ss_pred HHH-hhhhhHHHHHHHHHHHHHhhcC----CChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 80 FVF-AGNQIGTVFSSFLSGFLLKYTD----GDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 80 ~~~-~~~~~g~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
+.+ ...++|..++|.+++.+.++.+ .+|+.+|.+.+++.++..+...++.+|+.
T Consensus 348 ~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 348 LFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 997 5788999999999999998753 36999999988888887777777776653
No 68
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.68 E-value=6.7e-16 Score=110.76 Aligned_cols=122 Identities=18% Similarity=0.194 Sum_probs=103.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|.|+++.++.+.+.+.+.+.++. ++...+.+.|++.|++++..+ ....++.+++|+++|+++.++.
T Consensus 79 qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~ 155 (511)
T TIGR00806 79 LVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYS 155 (511)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999998 889999999999999999999 9999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHH---HHHHHHHHHHHHHHHHhhcc
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEI---FYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 130 (147)
.++..+|..+++++++.+. . .+|+.- .++......+..+. .+++|
T Consensus 156 ~sg~~vG~~Ia~~L~qll~-s--~gWr~y~~Ln~Isl~s~~~a~~~-a~~LP 203 (511)
T TIGR00806 156 RAAVLLGVFLSSVLGQLLV-T--LGWISYSTLNIISLVFMTFSVFL-ALFLK 203 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH-h--cCchhHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 9999999999999999944 4 477653 34444444443333 34444
No 69
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.66 E-value=1.8e-15 Score=108.53 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=103.9
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
+++.|++.||+|||+++..+.++.+++..++... ..++++.+++.+++.|++.+...+..+.++.+..|+++|++.+++
T Consensus 55 ~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (410)
T TIGR00885 55 AIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNL 134 (410)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHH
Confidence 4678999999999999999999999998876433 125788999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhc------------------------CCChhHHHHHHHHHHHHHHHH
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYT------------------------DGDWPEIFYLFGILGVLWFVA 124 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~~~~~~~~~ 124 (147)
.+...++|..++|.+++.+.... ..+||++|.+.+.+.++..+.
T Consensus 135 ~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 135 AQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998775331 025999998888776654433
No 70
>KOG0569|consensus
Probab=99.66 E-value=4e-16 Score=112.54 Aligned_cols=134 Identities=26% Similarity=0.323 Sum_probs=111.3
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
|++..++++||+|||..+.+..++..++..++..+. .+++.+++++|++.|+..+........++.|..|++.||..-.
T Consensus 76 Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~ 155 (485)
T KOG0569|consen 76 GSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGT 155 (485)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHH
Confidence 356789999999999999999888888887776652 3678999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740 80 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS 135 (147)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
+...+..+|..++..++..-.-.+...|++.+....++.++. ++...+.||+|+.
T Consensus 156 ~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESPk~ 210 (485)
T KOG0569|consen 156 LLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESPKY 210 (485)
T ss_pred HHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCcch
Confidence 999999999999977775544333357999999988888774 5555677887753
No 71
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.66 E-value=2.3e-15 Score=109.58 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=94.2
Q ss_pred Ccchhhhhhhh-cchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc--chhHHH
Q psy4740 2 HIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT--ERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~ 78 (147)
++++|+++||+ |||+++.++.++..++.+.+.... .+...+.+...+..++.+...+...++++|.+|++ +|..++
T Consensus 62 ~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~-~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf 140 (493)
T PRK15462 62 PILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE-IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGF 140 (493)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccccee
Confidence 45789999999 999999999999998887665431 22233444444555667777788889999999876 799999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVA 124 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (147)
++.+...++|..++|.+.+.+.+. .+|++.|.+.++..++..+.
T Consensus 141 ~i~Y~~~nlG~~iap~l~g~L~~~--~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 141 SLMYAAGNVGSIIAPIACGYAQEE--YSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh--hChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 69999999876655443333
No 72
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.66 E-value=3.6e-16 Score=117.24 Aligned_cols=130 Identities=15% Similarity=0.221 Sum_probs=106.3
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc---------------------------------------------
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--------------------------------------------- 36 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 36 (147)
+++.+++.||+|||+.+.++.++.++++++++..+
T Consensus 85 ~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 164 (633)
T TIGR00805 85 IIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQK 164 (633)
T ss_pred HHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccccccccccc
Confidence 46789999999999999999999999999886542
Q ss_pred ----cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CC------
Q psy4740 37 ----RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-DG------ 105 (147)
Q Consensus 37 ----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~------ 105 (147)
...+..++++|++.|++.+..++...+++.|++|+++|+.++++.+....+|..+++++++.+.+.. ++
T Consensus 165 ~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 165 QHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred ccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 0024567789999999999999999999999999999999999999999999999999999887642 10
Q ss_pred -------------ChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 106 -------------DWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 106 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
.|+..|++.+++.++..+..+++.++
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 26777888887777655554444333
No 73
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.66 E-value=1.6e-15 Score=120.29 Aligned_cols=126 Identities=17% Similarity=0.181 Sum_probs=97.8
Q ss_pred CcchhhhhhhhcchHHHHH---HHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGF---GILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
++++|+++||+|||+++.. ..+..++........ ++++.+++.|+++|++.+...|...+++.|++|+++|++++
T Consensus 69 ~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~ 146 (1140)
T PRK06814 69 SALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL--NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGAN 146 (1140)
T ss_pred hhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhh
Confidence 5788999999999997533 222222222222233 68899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
++.++..++|..++|.+++.+.+. .+|++.|....+..++. +...+..++.
T Consensus 147 ~~~~~~~~ig~~igp~l~g~l~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 197 (1140)
T PRK06814 147 ALVEAGTFIAILLGTIIGGLATIS--GNFVILVALLMGIAVLG-WLASLFIPKT 197 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH-HHHHhhCCCC
Confidence 999999999999999999999988 78999885544444443 3333444443
No 74
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.66 E-value=4.6e-15 Score=108.82 Aligned_cols=116 Identities=20% Similarity=0.230 Sum_probs=97.3
Q ss_pred cchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc--hhHHHH
Q psy4740 3 IPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE--RGKIGS 79 (147)
Q Consensus 3 ~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--r~~~~~ 79 (147)
+++|+++|| +|||+.+..+.++.+++..++.... ++...+++.+++.|++.+...+...+++.|++|+++ |..+++
T Consensus 75 ~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~ 153 (500)
T PRK09584 75 AIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFT 153 (500)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcch
Confidence 468999999 5999999999999999888877651 345566788899999999999999999999998654 456788
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy4740 80 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121 (147)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 121 (147)
+.+...++|..++|.+++.+.++ .+|++.|++.++...+.
T Consensus 154 ~~~~~~~iG~~~gp~i~g~l~~~--~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 154 MYYMSINIGSFFSMLATPWLAAK--YGWSVAFALSVVGMLIT 193 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHH
Confidence 88999999999999999999887 79999999877654443
No 75
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.65 E-value=2.3e-15 Score=107.63 Aligned_cols=128 Identities=14% Similarity=0.058 Sum_probs=96.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh-cc-cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF-AA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
+++.|++.||+|||+++..+.++..++...+.. .. ..+++.+++.|++.|++.+...+.....+.|.+|+++|++++|
T Consensus 65 ~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g 144 (402)
T TIGR00897 65 AWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVG 144 (402)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHH
Confidence 578899999999999999999888887765421 11 1467788899999999888777777788889999999999999
Q ss_pred HHHhhhhhHH-HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 80 FVFAGNQIGT-VFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 80 ~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
+.+...++|. .++|.+++.+.+. .+|+..++.......+..+...+..++
T Consensus 145 ~~~~~~~~g~~~~g~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (402)
T TIGR00897 145 WFWAVYSIGIGVFGSYYSSYAIPA--FGEMNTLWSALAFVLTGGVIALFSNKD 195 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999996 5889988888776 576655554443333333333333343
No 76
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.65 E-value=4.7e-15 Score=104.23 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=96.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+.+...++...+ .. ++.+.+++.|++.|++.+...+.....+.|.+| ++|++..+..
T Consensus 52 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 127 (355)
T TIGR00896 52 APLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLY 127 (355)
T ss_pred HHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHH
Confidence 5788999999999999999988887777766 55 678888899999999998888878888889886 6899999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (147)
+...++|..+++.+.+.+.+..+.+||..|...++..++
T Consensus 128 ~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 128 SMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999888776333499988877655443
No 77
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.65 E-value=5.8e-16 Score=111.04 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=103.0
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh---cccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF---AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
+++.|+++||+|||+++..+..+.+++...... ...++++.+++.|++.|++.+...+.....+.|..|+++|++..
T Consensus 69 ~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (417)
T PRK10489 69 LMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAG 148 (417)
T ss_pred HHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHH
Confidence 578899999999999998887776666554432 11256788889999999988888888888999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
++.+...++|..++|.+++.+.+. .+|++.|++.++..++..+.. +..|+.
T Consensus 149 ~~~~~~~~~g~~~g~~l~g~l~~~--~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 199 (417)
T PRK10489 149 AITMLTVRLGSVISPALGGLLIAA--GGVAWNYGLAAAGTFITLLPL-LRLPAL 199 (417)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 999999999999999999999887 689999988777666544443 344543
No 78
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.65 E-value=2.8e-15 Score=108.15 Aligned_cols=131 Identities=12% Similarity=0.163 Sum_probs=101.8
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc---cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
+++.|++.||+|+|+++.++.++..+.+...++.. .+++..+++.|++.|++ +..++.....+++++|+++||+++
T Consensus 87 rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~ 165 (462)
T PRK15034 87 RVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSAL 165 (462)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHH
Confidence 35779999999999999999999998888887642 26899999999999997 778888999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH-----hhc-----------CCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLL-----KYT-----------DGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
++.....++|..+++.+...+. ... ..+|+.+.++..++.++..+..++..++.+
T Consensus 166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~ 236 (462)
T PRK15034 166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIA 236 (462)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9997767777766655554332 210 134788888888877776666666655544
No 79
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.65 E-value=4.2e-15 Score=105.96 Aligned_cols=126 Identities=21% Similarity=0.241 Sum_probs=105.3
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|++.||+|+|+.+..+..+..++....... ++.+..++..++.|++.+..++.......|..|+++|++..+++
T Consensus 266 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 343 (399)
T PRK05122 266 RLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA--PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAY 343 (399)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3568999999999999888888777777766665 67777778889999998888887778888999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
+....+|..+++.+.+.+.+. .+|+..+++.+...++..+....+.++
T Consensus 344 ~~~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 344 SVFLDLSLGITGPLAGLVASW--FGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999888 789999998888877766555555443
No 80
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.64 E-value=1.6e-15 Score=111.90 Aligned_cols=123 Identities=24% Similarity=0.250 Sum_probs=101.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++|.+|||..++.+.++..++.++++.+ +|...++.+..+.|++.|.... ....++|..|.|.|+...++.
T Consensus 95 ~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA--~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~ 171 (599)
T PF06609_consen 95 FPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA--QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIA 171 (599)
T ss_pred HHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC--CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHH
Confidence 4788999999999999999999999999999999 9999999999999998776654 456689999999998888777
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC 129 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (147)
....-+....++.++..+..+ .+|||.|++..+...+..+...++.
T Consensus 172 ~~~~i~~~~~~~~ia~~~~~~--~~WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 172 SIPFIITTWISPLIAQLFAAH--SGWRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred HHHHHhhhcccHHHHHHhccC--CCcchHHHHHHHHHHHHHHHHHHHh
Confidence 665555555677777766555 6999999999888777655544443
No 81
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.64 E-value=6.1e-19 Score=127.35 Aligned_cols=131 Identities=24% Similarity=0.366 Sum_probs=112.3
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc---cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ---SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 77 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 77 (147)
|+++.|.++||+|||+.+..+.++..++.++..++ + +++.+.++|++.|++.|...+....++.|..|+++|+..
T Consensus 62 G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~ 139 (451)
T PF00083_consen 62 GALIFGFLADRYGRKPALIISALLMIIGSILIAFA--PSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFL 139 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence 56789999999999999999999999999999888 6 899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 78 GSFVFAGNQIGTVFSSFLSGFLLKYTD-GDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
.++.+....+|..++..++.......+ ..||..+.+..++.++..+ ...+.||+|+
T Consensus 140 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP~ 196 (451)
T PF00083_consen 140 SSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESPR 196 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999998888777655533321 4699999988888876444 4467788764
No 82
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.64 E-value=3.9e-15 Score=117.98 Aligned_cols=101 Identities=21% Similarity=0.209 Sum_probs=87.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
++++|+++||+|||++++++.++..+..++.... ...+++.+++.|++.|++.+...+...++++|++|+++|++++++
T Consensus 64 ~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 143 (1146)
T PRK08633 64 SSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGL 143 (1146)
T ss_pred hhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhH
Confidence 5789999999999999998877665555544322 115788999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhh
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
.....++|.++++.+++.+.+.
T Consensus 144 ~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 144 LEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988765
No 83
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.63 E-value=6.5e-15 Score=103.54 Aligned_cols=129 Identities=18% Similarity=0.175 Sum_probs=99.9
Q ss_pred Ccchhhhhhhh-----cchHHH-HHHHHHHHHHHHHhhhccc-ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740 2 HIPGGLLAQKF-----GGKHTL-GFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 74 (147)
Q Consensus 2 ~~~~g~l~d~~-----gr~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 74 (147)
++++|.+.||+ ||||.+ +.+.+..++.....++..+ .+.+.+....++.+.+.+...+...+++.|++|+++|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r 117 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL 117 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 46789999998 888874 5566666666555555421 3445566666777887777788889999999999999
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCC--------hhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD--------WPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
+++.++.....++|..+++.+++.+.+. .+ ||..|++.++..++..+..++..||.
T Consensus 118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~--~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 118 GYGSTIYIVGYRAGMLLSGSLALVLASP--EFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhh--cccccccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999988877 45 99999998887776555544445553
No 84
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.63 E-value=4.1e-15 Score=105.59 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=90.7
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+.+..+.++..+++..+... ++++.+++.|++.|++.+...+.....+.+..++++|++.++.+
T Consensus 58 ~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (381)
T PRK03633 58 TLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM--VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAY 135 (381)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5789999999999999999999999999888887 88999999999999999988888888888889999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhh
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~ 102 (147)
....++|..++|.+++.+.+.
T Consensus 136 ~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 136 MMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 999999999999999988665
No 85
>PTZ00207 hypothetical protein; Provisional
Probab=99.62 E-value=5.7e-15 Score=109.28 Aligned_cols=128 Identities=12% Similarity=0.087 Sum_probs=105.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc----ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR----QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 77 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 77 (147)
+++.|+++||+|||+++.++.++..++.++++++.+ .+++.+.+.|++.|++.+...+.....+.+++| ++||++
T Consensus 78 ~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a 156 (591)
T PTZ00207 78 LLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAV 156 (591)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHH
Confidence 457899999999999999999999999998887521 478889999999999999888888889999996 789999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
.++.....++|..+.+.+...+... +|+..|++.+++.++..+....+.++.|
T Consensus 157 ~Gi~~~~~gLGsaI~~~l~~~l~~~---~~~~~fl~l~vl~~vv~ll~~~~vr~p~ 209 (591)
T PTZ00207 157 VAIMKTFTGLGSAILGSIQLAFFSD---NTSAYFFFLMSFALVVGILAIVFMRLPP 209 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence 9999999999997655555444444 6888888888888877777666665543
No 86
>PRK10133 L-fucose transporter; Provisional
Probab=99.62 E-value=1e-14 Score=105.40 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=86.3
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhh---hcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTP---FAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
+++.|++.||+|||+++..+..+.+++++++. .. ++++.+++.|++.|++.+...+..+.++.|..|+++|...+
T Consensus 78 ~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a--~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~ 155 (438)
T PRK10133 78 PIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRL 155 (438)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHH
Confidence 57889999999999999999999999998753 34 78999999999999999999999999999987777777789
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLL 100 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~ 100 (147)
+..+....+|..+++.+++.+.
T Consensus 156 s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 156 NLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 87
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.62 E-value=1.1e-14 Score=106.57 Aligned_cols=128 Identities=18% Similarity=0.253 Sum_probs=103.5
Q ss_pred Ccchhhhhhhh-----cchHH-HHHHHHHHHHHHHHhhhcc-cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740 2 HIPGGLLAQKF-----GGKHT-LGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 74 (147)
Q Consensus 2 ~~~~g~l~d~~-----gr~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 74 (147)
++++|.++||+ |||+. +..+.+..+++...+++.. .++++.+.+.+++.+++.+...+...++..|++|+++|
T Consensus 62 ~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~r 141 (491)
T PRK11010 62 KFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEER 141 (491)
T ss_pred HHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 46899999999 99886 5566666666666665542 24677888899999998888888899999999999999
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLK-YTDGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
+++.++......+|..+++.+...+.+ . .+||..|++.++..++..+..+ ..||+
T Consensus 142 g~~~~i~~~g~~lG~llg~~l~~~l~~~~--~GWr~~f~i~a~l~ll~~l~~~-~~~e~ 197 (491)
T PRK11010 142 GAGAAISVLGYRLAMLVSGGLALWLADRY--LGWQGMYWLMAALLIPCIIATL-LAPEP 197 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence 999999999999999999999998887 4 5999999998887766544444 35554
No 88
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.61 E-value=2.2e-14 Score=102.33 Aligned_cols=127 Identities=16% Similarity=0.043 Sum_probs=92.5
Q ss_pred chhhhhhhhcchHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh--HHHHH
Q psy4740 4 PGGLLAQKFGGKHTLG-FGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG--KIGSF 80 (147)
Q Consensus 4 ~~g~l~d~~gr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~ 80 (147)
+.+.++||+|||+.++ .+.+..++...+..+. ++++.+++.+.+.+...+...+....+..|..+++.|. ...+.
T Consensus 70 ~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (393)
T PRK15011 70 FLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWN--RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSF 147 (393)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHH
Confidence 4444599999998754 4555555666666666 77777666665555545566777778888877766553 34467
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
.+...++|..++|.+++.+.++ .|||..|++.++..++..+......||.++
T Consensus 148 ~~~~~~lg~~~g~~i~~~l~~~--~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 148 LRAQVSLAWVIGPPLAYALAMG--FSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred HHHHHHHHHHHhhHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 8888999999999999999887 799999999888777766666666676543
No 89
>PRK12382 putative transporter; Provisional
Probab=99.59 E-value=1.7e-14 Score=102.62 Aligned_cols=123 Identities=25% Similarity=0.248 Sum_probs=105.8
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|++.||+|+|+.+..+..+..++....... ++....++..++.|++.+...+.....+.|.+|+++|++..++.
T Consensus 266 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 343 (392)
T PRK12382 266 RVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA--PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGY 343 (392)
T ss_pred HHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4678999999999999998888888877776665 67777778889999988888888888899999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
+....+|..++|.+.+.+.++ .+|+..|.+.+...++..+..+..
T Consensus 344 ~~~~~~g~~ig~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 344 AAFQDIAYGVSGPLAGMLATS--FGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998 689999999888877766655544
No 90
>KOG0252|consensus
Probab=99.58 E-value=2.5e-15 Score=106.51 Aligned_cols=134 Identities=22% Similarity=0.311 Sum_probs=104.4
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc-----cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ-----SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG 75 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 75 (147)
||++.|+++||+|||+++...+++..++++++++...+ -..++...|+++|+|.|+.+|.+.+..+|...++.||
T Consensus 100 GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RG 179 (538)
T KOG0252|consen 100 GQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRG 179 (538)
T ss_pred HHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccc
Confidence 58899999999999999999999999999877665211 2457778999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhc-------------CCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740 76 KIGSFVFAGNQIGTVFSSFLSGFLLKYT-------------DGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS 135 (147)
Q Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
...+.+.+..+.|...|..+.-.+..-+ +.-||..+.+..++.+. .+...+..||+++.
T Consensus 180 a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~-~ly~Rl~M~Et~~Y 251 (538)
T KOG0252|consen 180 AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALL-VLYFRLKMPETARY 251 (538)
T ss_pred ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHH-HHHhhhcCCcchhH
Confidence 9999877777777666655554443211 12589888887777765 45556667776543
No 91
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.58 E-value=2.2e-14 Score=102.32 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=104.6
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 82 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 82 (147)
+..|+++||+|||+.+..+.....+........ ++.+.+++.+++.|++.+...+.....+.+..|+++|++.++..+
T Consensus 276 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 353 (408)
T PRK09874 276 PRLGKLGDRIGPEKILITALIFSVLLLIPMSFV--QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQ 353 (408)
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHH
Confidence 457899999999999998888777766666555 667777888899999999988888889999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740 83 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC 129 (147)
Q Consensus 83 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (147)
....+|..++|.+++.+.+. .+|+..|++.+++.++..+......
T Consensus 354 ~~~~~g~~~gp~~~G~l~~~--~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 354 SFRDIGNVTGPLMGAAISAN--YGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHhhHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888 7899999999888777666555443
No 92
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.58 E-value=8.7e-15 Score=105.12 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=106.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH-
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF- 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~- 80 (147)
++++|++.||+|+|+.+..+.++..+...+.++. ++.+.+++.+++.|++.+...+....++.|.+|++.|+...+.
T Consensus 279 ~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 356 (420)
T PRK09528 279 MFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA--TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVG 356 (420)
T ss_pred HHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeeh
Confidence 4678999999999999998888888887777776 7788888889999888777777777889999999999887665
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
++...++|..++|.+.+.+.+. .||+..|.+.+++.++..+......+++++
T Consensus 357 ~~~~~~lg~~ig~~~~G~l~~~--~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 408 (420)
T PRK09528 357 FQFAKQLGAVFLSTLAGNLYDS--IGFQGTYLILGGIVLLFTLISVFTLSGDRE 408 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 5677889999999999999998 689999998888877666665555555443
No 93
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.8e-14 Score=101.04 Aligned_cols=129 Identities=18% Similarity=0.256 Sum_probs=111.6
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc-ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
++.|.+.||+|.|++..++.++..+.++....+.+ ++++.+++++.+.|++ |..+......+++++|++++|.++|+.
T Consensus 67 l~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~ 145 (417)
T COG2223 67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIA 145 (417)
T ss_pred HHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHh
Confidence 56789999999999999999999999998888732 3556999999999996 456777899999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCC---hhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGD---WPEIFYLFGILGVLWFVAWCFLCYNDPAS 135 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
. ..|+|..+...++..+... .+ |+....+..+..++..+..++...|.|+.
T Consensus 146 g-~GN~G~av~q~~~P~v~~~--~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~ 199 (417)
T COG2223 146 G-AGNLGVAVAQLVAPLVAVA--FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH 199 (417)
T ss_pred c-cccccHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 9 8999999998888888877 56 99999999888888888888888887763
No 94
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.58 E-value=6.2e-14 Score=102.66 Aligned_cols=132 Identities=12% Similarity=0.112 Sum_probs=92.0
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHH-hhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLL-TPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
++..|+++||+|||+.+..+.+...+.... ......++...+++.+++.|++.+...+....++.|.+|++.|+++++.
T Consensus 303 ~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~ 382 (490)
T PRK10642 303 QPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAA 382 (490)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHH
Confidence 356899999999999988776654433322 2112124566677788888877666666778888999999999999998
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS 135 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
.+....+++.++|.+.+.+.+.. .+|+..++...++.++..+.. ++.||+|+.
T Consensus 383 ~~~~~~~~g~~~p~i~g~l~~~~-~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~ 435 (490)
T PRK10642 383 AFNISVLVAGLTPTLAAWLVEST-QNLMMPAYYLMVVAVIGLITG-VTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHH-HHhccccCC
Confidence 65556677788999999887753 256766666555555544443 455777654
No 95
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.56 E-value=8.2e-14 Score=99.61 Aligned_cols=129 Identities=14% Similarity=0.128 Sum_probs=100.8
Q ss_pred Ccchhhhhhhh-----cchH-HHHHHHHHHHHHHHHhhhccc-ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740 2 HIPGGLLAQKF-----GGKH-TLGFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 74 (147)
Q Consensus 2 ~~~~g~l~d~~-----gr~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 74 (147)
++++|+++||+ |||| .+.++.+..++......+..+ .+.+.+.+..++.+...+...+...+++.|++|+++|
T Consensus 49 ~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r 128 (402)
T PRK11902 49 KFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEER 128 (402)
T ss_pred HHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 57899999999 7765 677777777776666665522 3466677777777888888888999999999999999
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
+++.++.....++|..+++.+...+.+.. .+||..|++.++..++..+. .+..||+
T Consensus 129 ~~~~~~~~~g~~~g~i~g~~l~~~l~~~~-~gw~~~f~i~a~~~l~~~l~-~~~~~e~ 184 (402)
T PRK11902 129 GAGAAVKVLGYRLAMLVSGGLALWLADRV-LGWGNTYLLMAGLMLAGALT-TLWAPEP 184 (402)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 99999999999999999999998887741 48999999988876654443 3344443
No 96
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.53 E-value=1.1e-13 Score=99.40 Aligned_cols=134 Identities=15% Similarity=-0.038 Sum_probs=105.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
.++.+++.||.++++.+..+.+...++....... ++.....+..++.|++.+...+...+++.|..|++.|++..+++
T Consensus 276 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T PRK10489 276 ALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM--PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLW 353 (417)
T ss_pred HHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 3567889999888888887777777776666555 66666677788888887776677778899999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYI 139 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (147)
+....+|..++|.+.+.+.+. .+++..+...++..++..+......++.++.++++
T Consensus 354 ~~~~~~g~~~g~~l~G~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (417)
T PRK10489 354 TAQNVTGDAIGAALLGGLGAM--MTPVASASASGFGLLIIGVLLLLVLGELRRFRQTP 409 (417)
T ss_pred HHHHhhhHhHHHHHHHHHHHH--hchhhHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 999999999999999999988 68888888777777666666666666655544433
No 97
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.52 E-value=1.2e-13 Score=97.11 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=96.2
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|++.||+|||+.+..+.....++.......+..+...++...++.+++.+...+....++.|.+|+++|++..++.
T Consensus 257 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 336 (377)
T TIGR00890 257 RPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFL 336 (377)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHH
Confidence 46789999999999999988888888877766552222233445567778888877777888999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (147)
+....+|..++|.+.+.+.+. .+|+..|.+.+++.++
T Consensus 337 ~~~~~~g~~~~~~~~g~l~~~--~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 337 YTAKAVAGIFGGLIASHALTE--IGFEYTFIVTGAFALT 373 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--hchhhHHHHHHHHHHH
Confidence 999999999999999999888 7899999888776654
No 98
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.50 E-value=3e-13 Score=94.09 Aligned_cols=120 Identities=30% Similarity=0.522 Sum_probs=107.5
Q ss_pred CcchhhhhhhhcchH-HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKH-TLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
+++.+++.||+|||+ .+..+..+..++....... ++.+...+..++.|++.+...+....++.|..|+++|++.++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (352)
T cd06174 228 ALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA--PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGL 305 (352)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHH
Confidence 456789999999999 9999999988888888777 6778888999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW 125 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (147)
.+...+++..+++.+.+.+.+. .+|+..+++.+++.++..+..
T Consensus 306 ~~~~~~~~~~i~~~i~g~l~~~--~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 306 FNTFGSLGGALGPLLAGLLLDT--GGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--cCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887 689999999888887755544
No 99
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.49 E-value=5.2e-13 Score=95.37 Aligned_cols=124 Identities=16% Similarity=0.054 Sum_probs=95.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|++.||+|||+.+....+...++....... ++...+.+..++.|++.+...+....++.|.+|+++|++..++.
T Consensus 272 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 349 (406)
T PRK11551 272 SLLIGALMDRLRPRRVVLLIYAGILASLAALAAA--PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAA 349 (406)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHH
Confidence 4578999999999999887666666655555544 56666666777788877777788888999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
+....+|..++|.+.+.+.+.. .+|...++......++..+..+..
T Consensus 350 ~~~~~~g~~~g~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 350 VAVGRLGSMAGPLLAGQLLALG-RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHhhhHHHHHHhhhHhhhhccC-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998763 356666666666655544444433
No 100
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.48 E-value=4.8e-13 Score=96.61 Aligned_cols=130 Identities=19% Similarity=0.178 Sum_probs=94.9
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh---cccc------cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF---AARQ------SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT 72 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 72 (147)
+++.|+++||+|||+.+..+.++.+++...... ...+ +...+....++.+.......+....++.|.+|++
T Consensus 336 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 415 (481)
T TIGR00879 336 TFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS 415 (481)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChH
Confidence 456799999999999998887777777666542 1111 2222223333333322333466677789999999
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 73 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 73 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
+|++++++.+...++|..++|.+.+.+.++ .+|++.|++.+++.++..+...++.||++
T Consensus 416 ~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 416 LRPKGISIAVAANWLANFIVGFLFPTMLES--IGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCccceehhHHHHHHHHHHHHheecccCC
Confidence 999999999999999999999999999888 68999999888887776666666666544
No 101
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.48 E-value=2.7e-13 Score=98.76 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=86.9
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
++.+|+++||+|||+.+........+..........++.....+..++.|+..............|.+|++.|+++.|+.
T Consensus 311 ~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~ 390 (467)
T PRK09556 311 SLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIK 390 (467)
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 46789999999999877655444333322222221245555667777777643332223345677999999999999999
Q ss_pred Hhhhhh-HHHHHHHHHHHHHhh----------cCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 82 FAGNQI-GTVFSSFLSGFLLKY----------TDGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 82 ~~~~~~-g~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
+...++ |..++|.+.|.+.+. ...+|+..|++..+..++..+...++
T Consensus 391 ~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 998886 779999999999981 01579999988877776655554433
No 102
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.48 E-value=7.1e-13 Score=94.57 Aligned_cols=121 Identities=12% Similarity=0.219 Sum_probs=93.2
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
.++.|+++||+|||+.+..+.....+........ ++++..++.+++.++..+...+....+..|.+|+ +|+++.+++
T Consensus 269 ~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~ 345 (393)
T PRK15011 269 MLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA--HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLY 345 (393)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHH
Confidence 3578999999999998877665555544444334 5666677777777776666666667778898875 599999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHh
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCF 127 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (147)
+...++|..++|.+++.+.+. .+|+..|++..+..++..+..+.
T Consensus 346 ~~~~~lg~~~g~~l~G~i~~~--~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 346 TNTSRVGWIIAGSLAGIVAEI--WNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHh
Confidence 998999999999999999998 68999998887777665555443
No 103
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.48 E-value=1e-12 Score=93.47 Aligned_cols=112 Identities=17% Similarity=-0.002 Sum_probs=83.9
Q ss_pred Ccchhhhhhhhcch----HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740 2 HIPGGLLAQKFGGK----HTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 77 (147)
Q Consensus 2 ~~~~g~l~d~~gr~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 77 (147)
++++|.+.||+||+ +.+........ ....... ++++.+++.|++.|++.+...+...+...++ +++|++.
T Consensus 56 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a 129 (382)
T PRK11128 56 SLLIAPRVKDPSQLIPALRLLALLTLLFA--VAFWFGA--HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLD 129 (382)
T ss_pred hHHHHHHHhhhcchHHHHHHHHHHHHHHH--HHHHHhc--ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCC
Confidence 57789999999984 33322222211 1122223 6788888999999999888888888777776 4567888
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy4740 78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121 (147)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 121 (147)
.+......++|..++|.+++.+.++ .+||..|++.++..++.
T Consensus 130 ~~~~~~~~~lg~~igp~lgg~l~~~--~g~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 130 YGKVRLWGSIAFVIGSALTGKLVSW--FGEQAILWILTAGVASM 171 (382)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH--cChhHHHHHHHHHHHHH
Confidence 8888888899999999999999998 79999998877655443
No 104
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.47 E-value=4.1e-13 Score=98.76 Aligned_cols=125 Identities=20% Similarity=0.273 Sum_probs=103.4
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc---ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA---ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
.+++|.++||++||++++.+-++.++........ ...+.+.+++..++.|++.+...|...+.+.|..|+++...+.
T Consensus 62 sl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~ 141 (524)
T PF05977_consen 62 SLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAAN 141 (524)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHH
Confidence 4689999999999999999877766554443322 2246788888999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
++.....++...+||.++|.+... .|-.+.|.+.++..++........
T Consensus 142 al~s~~~niar~iGPalgG~Lva~--~G~~~~f~inalsfl~~i~~l~~~ 189 (524)
T PF05977_consen 142 ALNSISFNIARIIGPALGGILVAF--FGAAAAFLINALSFLISILALLRW 189 (524)
T ss_pred HHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999887 677888888877766654444433
No 105
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.47 E-value=5.1e-13 Score=95.30 Aligned_cols=126 Identities=14% Similarity=0.076 Sum_probs=88.3
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhh---hcc---cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTP---FAA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG 75 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 75 (147)
+++.|+++||+|||+.+..+....++...... ... ........+.+++.|++.+...+....+..|..+ +++
T Consensus 55 ~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~ 132 (396)
T TIGR00882 55 QPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSN 132 (396)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcc
Confidence 57899999999999999877666554433221 110 0122334566788888888888888777777533 334
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 76 KIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
..++......++|..++|.+++.+.+. +|+..|++.+...++..+..+...+++
T Consensus 133 ~~~g~~~~~~~~g~~~g~~~~g~l~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 133 FEYGKARMFGCVGWALCASIAGILFSI---DPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred cccchhhhhcccHHHHHHHHHhhhhcc---CchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 566777778889999999999987654 899999998888777655554444443
No 106
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.44 E-value=2e-12 Score=92.00 Aligned_cols=111 Identities=17% Similarity=-0.019 Sum_probs=83.7
Q ss_pred CcchhhhhhhhcchHHHHHHHHH-HHHHHH-HhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILS-TAIFTL-LTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
++++|.++||+||+......... ..+... ..... ++++.+++.|.+.+.+.+...|...++..|. +++|++.++
T Consensus 56 ~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g 131 (382)
T TIGR00902 56 GLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGA--HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYG 131 (382)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCcc
Confidence 56789999999985433222111 111111 22234 7788899999999998888888888887665 477899999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740 80 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG 118 (147)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 118 (147)
......++|..++|.+++.+.++ .+||..|++.....
T Consensus 132 ~~~~~~slG~~~g~~l~g~l~~~--~g~~~~f~~~~~~~ 168 (382)
T TIGR00902 132 KVRLIGSAAFIIGSALFGGLIGM--FDEQNILAILTAGL 168 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--cChhHHHHHHHHHH
Confidence 99999999999999999999998 79999988876553
No 107
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.44 E-value=1.4e-12 Score=95.47 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=83.2
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+.+..+..+..+..+........+.+......++.+.......+....++.|.+|+++|++.+++.
T Consensus 328 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 407 (496)
T PRK03893 328 CCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFT 407 (496)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchh
Confidence 46789999999999998877766665554433332233333434444444333334556777899999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG 118 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 118 (147)
+....+|..++|.+.+.+.+. .+|+..+...+...
T Consensus 408 ~~~~~~g~~lgp~l~g~l~~~--~g~~~~~~~~~~~~ 442 (496)
T PRK03893 408 YNVGALGGALAPILGALIAQR--LDLGTALASLSFSL 442 (496)
T ss_pred hhhhhHHHHHHHHHHHHHhcc--CChHHHHHHHHHHH
Confidence 999999999999999999988 68887776554443
No 108
>KOG2504|consensus
Probab=99.44 E-value=1.7e-12 Score=95.17 Aligned_cols=128 Identities=25% Similarity=0.308 Sum_probs=113.0
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH-HHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALR-FFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
.|+.+.+.||+|.|.+.+.|.++..++.++..++ ++.+.+++.. ++.|+|.+..+......+..+| +++|+.+.|+
T Consensus 98 gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~--~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gi 174 (509)
T KOG2504|consen 98 GPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA--TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGI 174 (509)
T ss_pred ccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhh
Confidence 5788999999999999999999999999999999 8887777666 8899999999999999999877 5899999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
...+..+|..+-|.+...+.+. .|||+.+++.+.+.+-.+.......|..++
T Consensus 175 a~~GsG~G~~~~~~l~~~l~~~--~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~ 226 (509)
T KOG2504|consen 175 AVSGTGVGTVVFPPLLKYLLSK--YGWRGALLIFGGISLNVLVAGALLRPLSPP 226 (509)
T ss_pred hhccCCcceeeHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 9999999999999999999988 899999999988887767777766664433
No 109
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.44 E-value=8.2e-13 Score=96.22 Aligned_cols=132 Identities=19% Similarity=0.125 Sum_probs=93.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccccc--HHHHHHHHHHHhhccccC-cccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQS--ANWLIALRFFEGLGEGTT-FPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~ 78 (147)
.++.++++||+|||+.+..+.++.+++.+.+.....++ ........++.+.+.+.. .+....+++|.+|+++|+.++
T Consensus 323 ~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 402 (479)
T PRK10077 323 TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKAL 402 (479)
T ss_pred HHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHH
Confidence 35678999999999999999888888777664331111 112223334444444332 366789999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH------hhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLL------KYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS 135 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
++.+....++..+++.+...+. +. .+|+..|++.+...++..+..+++.||++++
T Consensus 403 g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 463 (479)
T PRK10077 403 AIAVAAQWIANYFVSWTFPMMDKNSWLVAH--FHNGFSYWIYGCMGVLAALFMWKFVPETKGK 463 (479)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhccchhhh--ccCccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 9999999999988876665443 33 5788888888877776666666666665543
No 110
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.43 E-value=1.9e-12 Score=91.29 Aligned_cols=119 Identities=13% Similarity=0.206 Sum_probs=94.3
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 82 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 82 (147)
++.|++.||+|||+.+.++.+...+........ ++.+..++.+++.|++.+...+....++.|..|+ ++++..++++
T Consensus 253 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~ 329 (375)
T TIGR00899 253 LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD--NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYT 329 (375)
T ss_pred HhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHH
Confidence 567899999999999887766655554444444 5666677778888888887777778888998875 5679999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q psy4740 83 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWC 126 (147)
Q Consensus 83 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (147)
...++|..++|.+.+.+.+. .+|+..|++.++..++..+...
T Consensus 330 ~~~~~g~~~g~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 330 NTGRVGWIIAGSVGGILAER--WSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999888 6899999988887766555543
No 111
>PRK03545 putative arabinose transporter; Provisional
Probab=99.43 E-value=5e-12 Score=90.05 Aligned_cols=123 Identities=17% Similarity=0.058 Sum_probs=93.7
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHh-hhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLT-PFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
+++.|+++||++||+.+. +..+..+..... ... ++.+.+++..++.|++.....+.....+.|..| ++|+++++.
T Consensus 258 ~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 333 (390)
T PRK03545 258 SVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAA--NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMAL 333 (390)
T ss_pred HHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHH
Confidence 467899999999886543 444333333322 333 566777778888888877766767778888766 688999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
++....+|..+||.+++.+.++ .+++..|++.+.+.++..+......+
T Consensus 334 ~~~~~~~g~~~G~~~~G~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 334 FSGIFNIGIGAGALLGNQVSLH--LGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999998 79999999998888776666655544
No 112
>PRK09952 shikimate transporter; Provisional
Probab=99.42 E-value=4.2e-12 Score=91.89 Aligned_cols=125 Identities=13% Similarity=0.147 Sum_probs=89.3
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc--ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA--ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
+..|+++||+|||+.+..+.++..+........ ..++....++..++.+++.+...+....++.|.+|++.|+.+.++
T Consensus 304 ~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~ 383 (438)
T PRK09952 304 PCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGV 383 (438)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhH
Confidence 467999999999999888766655544333221 112333444455666777777777788999999999999999998
Q ss_pred HHh-hhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHh
Q psy4740 81 VFA-GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCF 127 (147)
Q Consensus 81 ~~~-~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (147)
.+. ...+++.++|.+.+.+.+.++.+|...+...+...++..+..+.
T Consensus 384 ~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 384 GYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 554 45589999999999998864346888777777776665555443
No 113
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.42 E-value=1.7e-12 Score=93.13 Aligned_cols=126 Identities=22% Similarity=0.303 Sum_probs=108.0
Q ss_pred Ccchhhhhhhh-cchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc--chhHHH
Q psy4740 2 HIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT--ERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~ 78 (147)
..++||++||+ |+|+++..+.++.+++.+..+.....+...++++..+.++|.|..-+...+++.|.+|++ +|...+
T Consensus 78 ~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gF 157 (498)
T COG3104 78 PIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGF 157 (498)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCc
Confidence 35789999995 999999999999999999887762125677888888899999999999999999999764 578888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC 129 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (147)
++.++..++|+.++|.+.+.+.+. .+|...|...++-.....+..+...
T Consensus 158 t~fY~~iNiGsl~~p~i~~~~~~~--~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 158 TLFYMGINIGSLIAPIITGLLAIN--YGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred cEEEEEeehHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999998 7999999998888877655555443
No 114
>TIGR00898 2A0119 cation transport protein.
Probab=99.40 E-value=3.2e-12 Score=93.80 Aligned_cols=127 Identities=20% Similarity=0.151 Sum_probs=95.0
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 82 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 82 (147)
+..+++.||+|||+.+..+.++.+++.+........+.....+..++.+.+.+..++....+.+|.+|++.|+.++++.+
T Consensus 373 ~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 452 (505)
T TIGR00898 373 LITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCS 452 (505)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHH
Confidence 45788999999999999988888888777666532222444445556666666677788899999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 83 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 83 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
....+|.+++|.+.+ +.+. ++...+.+.+...++..+... +.||++.
T Consensus 453 ~~~~ig~~i~p~i~~-~~~~---~~~~~~~~~~~~~~~~~~~~~-~lpet~~ 499 (505)
T TIGR00898 453 TMARVGSIISPFLVY-LGEK---WLFLPLVLFGGLALLAGILTL-FLPETKG 499 (505)
T ss_pred HHHHHHHHHHhHHHH-HHHH---HHhhHHHHHHHHHHHHHHHHH-cCcCCCC
Confidence 999999999999998 4443 566677777766666545444 4565543
No 115
>KOG0253|consensus
Probab=99.40 E-value=3.3e-12 Score=89.07 Aligned_cols=126 Identities=18% Similarity=0.289 Sum_probs=107.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+..+|.++|++|||+...+......+...+.+.+ +|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|..-+-+.
T Consensus 130 a~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s--pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~ 206 (528)
T KOG0253|consen 130 AMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS--PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS 206 (528)
T ss_pred hhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC--CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH
Confidence 4678999999999999999999999988888888 9999999999999999999 888899999999999998777666
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
..+.+|..+...+.-..+.+ .||||.......+..+..... +..+|+|+
T Consensus 207 -~~waig~v~ea~law~vm~~--~gwr~~l~~~~~pl~~~a~f~-~w~~ESpR 255 (528)
T KOG0253|consen 207 -FFWAIGQVFEALLAWGVMSN--FGWRYLLFTSSTPLMFAARFL-VWVYESPR 255 (528)
T ss_pred -HHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhHHHHHHHHH-hhcccCcc
Confidence 88999999999999888888 799998888887766654444 45566654
No 116
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.39 E-value=3.6e-12 Score=91.68 Aligned_cols=126 Identities=16% Similarity=0.087 Sum_probs=77.7
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh-cccc-----cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF-AARQ-----SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG 75 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 75 (147)
++++|+++||+|||+++.++..+.++....... .... ......+..+..|.+.....+....+..+. .++++
T Consensus 63 ~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g 140 (420)
T PRK09528 63 QPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSG 140 (420)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--Hhhcc
Confidence 678999999999999988765555444322111 1000 111122233334433333333333333322 24567
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 76 KIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
..++......++|..++|.+++.+.+. +|+..|++.++..++..+..+...+++
T Consensus 141 ~~~g~~~~~~~~g~~i~~~~~g~l~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 141 FEYGRARMWGSLGWALCAFIAGILFNI---NPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred ccchhhHHhhhHHHHHHHHHHHHHHhc---CchHhHHHHHHHHHHHHHHHhcccccc
Confidence 778888888899999999999988765 899999988877776555555554443
No 117
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.39 E-value=4.4e-12 Score=93.21 Aligned_cols=132 Identities=12% Similarity=0.090 Sum_probs=87.5
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR--QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
+..+++.||+|||+.++.+.++..+...+...... .+........+...+......+....+.+|.+|++.|+++.++
T Consensus 353 ~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~ 432 (502)
T TIGR00887 353 WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGI 432 (502)
T ss_pred HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHH
Confidence 35678999999999998887776666655543310 1111111111111222223345667778999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYT--------DGDWPEIFYLFGILGVLWFVAWCFLCYNDPAS 135 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
.+....++..++|.+.+.+.+.+ +.++...|++.++..++..+.. ++.||++.+
T Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~ 494 (502)
T TIGR00887 433 SAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGK 494 (502)
T ss_pred HHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCC
Confidence 99999999999999999887742 1244567777777666654443 566776553
No 118
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.39 E-value=6.8e-12 Score=90.42 Aligned_cols=133 Identities=16% Similarity=0.173 Sum_probs=96.7
Q ss_pred CCcchhhhhhh----hcch-HHHHHHHHHHHHHHHHhhhcccc----cHHHHHHHHHHHhhccccCcccHHHHhhhhc-C
Q psy4740 1 MHIPGGLLAQK----FGGK-HTLGFGILSTAIFTLLTPFAARQ----SANWLIALRFFEGLGEGTTFPALNTLLAQWV-P 70 (147)
Q Consensus 1 ~~~~~g~l~d~----~gr~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~ 70 (147)
.+|+.|+++|| +||| +.++.+....++..+++...+.. ....+++.+++.+++.+.......++..|.. +
T Consensus 51 ~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 130 (437)
T TIGR00792 51 TDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLD 130 (437)
T ss_pred ccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCC
Confidence 36889999998 6764 46667777777777766554211 1445666778888888887777888888887 5
Q ss_pred CcchhHHHHHHHhhhhhHHHHHHHHHHHHHhh-----cCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 71 PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY-----TDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 71 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
+++|++..+.......+|..+++.+.+.+... ...+|+..+.+.+++..+..+......+|++
T Consensus 131 ~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 131 PRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 68999999998888888888777766655532 1258999999888887776666556666654
No 119
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.38 E-value=8.2e-12 Score=89.78 Aligned_cols=109 Identities=18% Similarity=0.125 Sum_probs=75.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|++.||+|||+.+..+.++..+..........++........+..+....+..+....++.|.+|+++|++++|+.
T Consensus 283 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 362 (426)
T PRK12307 283 NIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLI 362 (426)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHH
Confidence 45789999999999998888777666555443332122222222222222222333445667889999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFY 112 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 112 (147)
+....+++.++|.+.+.+.+. .++....+
T Consensus 363 ~~~~~~~~~~gp~~~g~l~~~--~g~~~~~~ 391 (426)
T PRK12307 363 YNLAATSGTFNSMAATWLGIT--MGLGAALT 391 (426)
T ss_pred HHHHhHHHHHHHHHHHHHHHc--ccHHHHHH
Confidence 999999999999999999888 56554333
No 120
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.38 E-value=1.2e-11 Score=90.23 Aligned_cols=124 Identities=19% Similarity=0.221 Sum_probs=102.0
Q ss_pred Ccchhhhhhhhcch--HHHHHHHHHHHHHHHHhhh------cccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740 2 HIPGGLLAQKFGGK--HTLGFGILSTAIFTLLTPF------AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE 73 (147)
Q Consensus 2 ~~~~g~l~d~~gr~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 73 (147)
.+.+|++.||+|.| +++....++..+.++...+ ...++.+.+++..++.|+.+|..++.+-++.+|+.|+++
T Consensus 334 a~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~ 413 (477)
T PF11700_consen 334 ALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR 413 (477)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch
Confidence 46789999999999 8888877777555544433 012677788899999999999999999999999999999
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q psy4740 74 RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWC 126 (147)
Q Consensus 74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (147)
.+..+|++.........+||++.+.+.+.++ +.|..+....++.++..++..
T Consensus 414 e~efFgly~i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl~ll~ 465 (477)
T PF11700_consen 414 EAEFFGLYAITGKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGLILLF 465 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999864 578887777777666555543
No 121
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.37 E-value=6.1e-12 Score=91.55 Aligned_cols=130 Identities=15% Similarity=0.086 Sum_probs=93.3
Q ss_pred Ccchhhhhh----hhcchHHHHHH-HHHHHHHHHHhhhcccccH-----------------HHHHHHHHHHhhccccCcc
Q psy4740 2 HIPGGLLAQ----KFGGKHTLGFG-ILSTAIFTLLTPFAARQSA-----------------NWLIALRFFEGLGEGTTFP 59 (147)
Q Consensus 2 ~~~~g~l~d----~~gr~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~g~~~~~~~~ 59 (147)
+|+.|+++| |+|||+.++++ ....++...+++++ ++. ...++...+..++.....+
T Consensus 56 ~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~--~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~ 133 (477)
T TIGR01301 56 QPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA--ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQG 133 (477)
T ss_pred HhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC--chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999 59999998875 55555555555554 221 1222333334445666667
Q ss_pred cHHHHhhhhcCCcch--hHHHHHHHhhhhhHHHHHHHHHHHHH--hhc-----------CCChhHHHHHHHHHHHHHHHH
Q psy4740 60 ALNTLLAQWVPPTER--GKIGSFVFAGNQIGTVFSSFLSGFLL--KYT-----------DGDWPEIFYLFGILGVLWFVA 124 (147)
Q Consensus 60 ~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~-----------~~~~~~~~~~~~~~~~~~~~~ 124 (147)
...++++|..|+++| +.+.++.+...++|..+++.+++... +.. ..+.+..|++.++..++..+.
T Consensus 134 p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~ 213 (477)
T TIGR01301 134 PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYI 213 (477)
T ss_pred HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 788999999998865 57888899999999999999998752 211 026789999998888887778
Q ss_pred HHhhccCCC
Q psy4740 125 WCFLCYNDP 133 (147)
Q Consensus 125 ~~~~~~~~~ 133 (147)
..+..+|.+
T Consensus 214 t~~~v~E~~ 222 (477)
T TIGR01301 214 ALSAVKENP 222 (477)
T ss_pred HeeeeeccC
Confidence 777777754
No 122
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.36 E-value=1.9e-11 Score=86.88 Aligned_cols=114 Identities=14% Similarity=0.219 Sum_probs=89.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|++.||+|+|+.+..+..+..++..... . .........+.|.+.....|.....+.|..|+++++...+..
T Consensus 252 ~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~----~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 326 (381)
T PRK03633 252 QWPIGRLADRFGRLLVLRVQVFVVILGSIAML----S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQAL 326 (381)
T ss_pred HhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh----h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 56789999999999998887777666554432 1 122334566677766677888888899999988888888888
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF 122 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 122 (147)
+...++|..++|.+++.+.++ .++++.|.+.+.+.++..
T Consensus 327 ~~~~~lG~~igp~~~G~l~~~--~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 327 LLSYTVGSLLGPSFTAMLMQN--YSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 888999999999999999998 689999988877776543
No 123
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2.3e-11 Score=85.39 Aligned_cols=127 Identities=22% Similarity=0.205 Sum_probs=107.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
.++.+++.+|+|+|+.++++..+.++++.+..-+ ..+++..++..-++.|.|.+......+.++....++++..+.+++
T Consensus 65 ~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl 144 (422)
T COG0738 65 SLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNL 144 (422)
T ss_pred hccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHH
Confidence 4688999999999999999999999999988533 336888889999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhc-----------------CCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYT-----------------DGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
.+..+.+|.+++|.+++.+..+. -..++.+|...+...++..+.....
T Consensus 145 ~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~ 209 (422)
T COG0738 145 AQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLS 209 (422)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999887730 0257778887777666554444433
No 124
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.35 E-value=3.9e-12 Score=92.51 Aligned_cols=119 Identities=22% Similarity=0.182 Sum_probs=90.7
Q ss_pred Ccchhhhhhhh--cchHHHHHH--HHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740 2 HIPGGLLAQKF--GGKHTLGFG--ILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 77 (147)
Q Consensus 2 ~~~~g~l~d~~--gr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 77 (147)
+++.|+++||. ++|+...+. .+...+..+.+... ++++.+++.+++.|++.+...+...+.+.|.+|++++++.
T Consensus 293 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~ 370 (455)
T TIGR00892 293 RPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA--GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSA 370 (455)
T ss_pred HHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhH
Confidence 45678999973 344433333 33333333444444 6777888889999999998888889999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy4740 78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFV 123 (147)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 123 (147)
+++++...++|..++|.+++.+.+..+ +|+..|++.++..++..+
T Consensus 371 ~g~~~~~~~lg~~igp~i~G~l~~~~g-~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 371 VGLVTIVECCAVLIGPPLAGRLVDATK-NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HhHHHHHHHHHHHccccceeeeehhcC-CcchHHHHhhHHHHHHHH
Confidence 999999999999999999999988732 699998888776655433
No 125
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.34 E-value=3e-11 Score=86.33 Aligned_cols=129 Identities=15% Similarity=0.094 Sum_probs=95.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-CcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-PTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~ 80 (147)
++..+++.||+|||+.+..+..+..++........ .+.... ..++.|++.+...+.......|..+ +++|++..+.
T Consensus 257 ~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~ 333 (393)
T PRK09705 257 ALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP-LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAF 333 (393)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc-chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 45789999999999998888777777666544332 222222 2345677777777777767777775 5789999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
.+....++..++|.+.+.+.+..+ +|...|++.....++.......+.||++.
T Consensus 334 ~~~~~~~~~~~gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 334 MQGIGFIIAGLAPWFSGVLRSISG-NYLMDWAFHALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999843 58888888777777766666666666544
No 126
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.33 E-value=1.1e-11 Score=90.09 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=79.9
Q ss_pred Ccchhhhhhhh--cchHHH-HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKF--GGKHTL-GFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~--gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
.++.|+++||+ +||+.. .....+..++..........+....++..++.|............+..|.+|++.|+++.
T Consensus 306 ~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 385 (452)
T PRK11273 306 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 385 (452)
T ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHH
Confidence 45789999999 555432 222233333322222221134444444444445433222223345678999999999999
Q ss_pred HHHHhhhhhHHHH-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740 79 SFVFAGNQIGTVF-SSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC 129 (147)
Q Consensus 79 ~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (147)
|+.+....+|+.+ +|.+.+.+.+. .+|+..|++.++..++.++......
T Consensus 386 g~~~~~~~~g~~~~g~~v~g~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 386 GFTGLFGYLGGSVAASAIVGYTVDF--FGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888887654 79999999998 6899999988887776655555443
No 127
>KOG0253|consensus
Probab=99.30 E-value=9.9e-12 Score=86.73 Aligned_cols=124 Identities=19% Similarity=0.278 Sum_probs=89.5
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccH--HHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSA--NWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
|.++.+++.||+|||+.+....++.++..+.......+|. .++...|++ .++.+...+.|..|.+|+..|+.+.
T Consensus 397 GlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPTavRatgv 472 (528)
T KOG0253|consen 397 GLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPTAVRATGV 472 (528)
T ss_pred chhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccchhhhhcch
Confidence 3467899999999999999999999998888776633332 233345544 3445566788999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
|.......+|+++.|.++ +... .+-..+..+.+.+.++..+...++.-|+
T Consensus 473 GtcSsmaRIggI~~p~iA--~~~e--~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 473 GTCSSMARIGGIFSPVIA--MRAE--LSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhhHHhhhhhhhhHHH--HHhc--cceeehHHHHHHHHHHHHHHheeeeecc
Confidence 999999999999999999 2222 2333445555555555555555443343
No 128
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.30 E-value=5.5e-11 Score=84.62 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=98.4
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 82 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 82 (147)
++.+++.||+|+|+.+.++.+...+......+. ++.+.++..+++.|+..+...+....++++. |+++|++..++++
T Consensus 258 ~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~ 334 (382)
T TIGR00902 258 AFSNKLFQNCSARDLLLISAIACVGRWAIIGAI--EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYN 334 (382)
T ss_pred HHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHH
Confidence 467899999999999999999999998888777 8888899999999999999999999999998 9999999999986
Q ss_pred -hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy4740 83 -AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121 (147)
Q Consensus 83 -~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 121 (147)
...++|..+++.++|.+.++ .++ ..|...+.+.++.
T Consensus 335 ~~~~g~g~~~g~~~~G~l~~~--~g~-~~~~~~~~~~~~~ 371 (382)
T TIGR00902 335 ALAMGGLIAIFTAFAGFIYPT--LGA-GTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--ccH-HHHHHHHHHHHHH
Confidence 46789999999999999999 565 5677777766654
No 129
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.29 E-value=5.4e-11 Score=86.03 Aligned_cols=128 Identities=13% Similarity=-0.002 Sum_probs=79.7
Q ss_pred Ccchhhhhhhh--cc-hHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKF--GG-KHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~--gr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
++..|+++||+ ++ +.......+...+...........+........+..|+..............|.+|+++|++..
T Consensus 296 ~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 375 (434)
T PRK11663 296 ALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAAT 375 (434)
T ss_pred HHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHH
Confidence 46789999998 33 3322221111111111111111123333333334444432221222345678999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
++.+....+|..++|.+.+.+.+. .+|+..|+..+++.++..+..+...++
T Consensus 376 g~~~~~~~~g~~~~p~~~g~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 376 GFVGLFAYLGAALSGYPLAKVLEI--WHWTGFFVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998 689999998888877766655544444
No 130
>PRK03699 putative transporter; Provisional
Probab=99.29 E-value=2.9e-11 Score=86.35 Aligned_cols=122 Identities=14% Similarity=0.082 Sum_probs=93.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
.+..|+++||++||+.+.....+..+...+.... ++.....+..++.|++.+..++...++..|..| ++++...+..
T Consensus 258 ~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~ 334 (394)
T PRK03699 258 MWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT--DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFI 334 (394)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHH
Confidence 4568999999999999887776666655555444 565566666778888777777777778888775 4467788888
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
.....+|..++|.+.+.+.+. .+++..++..+++.++..+.....
T Consensus 335 ~~~~~~g~~i~p~~~G~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 335 LTCGTIGTMLTFVVTSPIVAH--FGLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--hCchhhhhhhHHHHHHHHHHHHHH
Confidence 888899999999999999998 689999888887777665544433
No 131
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.27 E-value=2e-11 Score=86.35 Aligned_cols=115 Identities=19% Similarity=0.219 Sum_probs=84.3
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHH--HHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFT--LLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
+++.|+++||+|||+.+.....+..+.. ........++.+......++.|.+.+...+.....+.|.+|+++|+++.+
T Consensus 272 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 351 (394)
T TIGR00883 272 IPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGAS 351 (394)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEee
Confidence 3578999999999998775544443332 12222222455666677788888888888889999999999999999999
Q ss_pred HH-HhhhhhHHHHHHHHHHHHHhhcCCC-hhHHHHHHHHHH
Q psy4740 80 FV-FAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYLFGILG 118 (147)
Q Consensus 80 ~~-~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~ 118 (147)
+. +....+|..++|.+++.+.++ .+ |+..++......
T Consensus 352 ~~~~~~~~~g~~~~p~~~g~l~~~--~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 352 LAYNLAGAIFGGFAPYIAAALVAM--TGDWYAIGYYLAALA 390 (394)
T ss_pred ehhHhHHHHHhhHHHHHHHHHHHH--cCcchhHHHHHHHHH
Confidence 84 455678888999999999988 45 777666655443
No 132
>PRK10054 putative transporter; Provisional
Probab=99.26 E-value=1.6e-10 Score=82.76 Aligned_cols=121 Identities=16% Similarity=0.048 Sum_probs=95.0
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|++.||+++|+.+..+..+..++....... .++.+.+.+..++.|++.+...|.....+.+..|++.|+++.+..
T Consensus 261 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~ 339 (395)
T PRK10054 261 QYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQ 339 (395)
T ss_pred hhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHH
Confidence 4567899999999999988887777777666543 145556667788899998887888888999999999999998865
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWC 126 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (147)
+ ...+|..++|.+++.+.++ .+....|++.+....+..+...
T Consensus 340 ~-~~~~G~~~Gp~~~G~l~~~--~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 340 S-LGWLGAAINPLVSGVILTT--LPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred H-HHHHHHHHHHHHHHHHHHH--cChhhHHHHHHHHHHHHHHHHH
Confidence 4 5668999999999999999 6777778776666555444443
No 133
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.26 E-value=1.6e-10 Score=84.94 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=91.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh-c-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF-A-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
.++.|+++||+|+|+.+..+.++.++....... . ..++...+....++..+..+...+...++..+..+++.+++..+
T Consensus 276 ~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~g 355 (491)
T PRK11010 276 ALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFA 355 (491)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 457899999999998877666554544433211 1 11344444444455444444455666888899999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740 80 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC 129 (147)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (147)
+.++..++|..+++.+.|.+.+. .||+..|.+.++..++..+......
T Consensus 356 l~~s~~~lg~~~~~~~~G~l~~~--~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 356 LLSALSAVGRVYVGPVAGWFVEA--HGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 6899999988888877665555543
No 134
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.25 E-value=9.3e-11 Score=82.73 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=80.7
Q ss_pred CcchhhhhhhhcchHHHH-HHHHHHHH----HHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh
Q psy4740 2 HIPGGLLAQKFGGKHTLG-FGILSTAI----FTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG 75 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~-~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 75 (147)
+++.|+++||++||+... .......+ ........ ..++....+....+.+.+.+ ..+....+++|.+|+++|+
T Consensus 268 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 346 (399)
T TIGR00893 268 MILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAG 346 (399)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHH
Confidence 457899999999986111 11111111 11111111 11233333333333333433 6788899999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHHHHH
Q psy4740 76 KIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYLFGILGVLWFVAWC 126 (147)
Q Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 126 (147)
+..++.+...++|..++|.+.+.+.+. .+ |+..+++.+...++..+...
T Consensus 347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 347 LTGGLINSLGNLGGIVGPIVIGAIAAT--TGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHhhhhhhHHhhhhccC--CCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 56 99888888777766544443
No 135
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.25 E-value=5.6e-11 Score=84.53 Aligned_cols=108 Identities=14% Similarity=0.205 Sum_probs=83.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHH-hhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLL-TPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
.++.|++.||+|||+.+..+.....+.... .... ++...+.+..++.+...+...+....++.|.+|+++|++.+|+
T Consensus 291 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 368 (405)
T TIGR00891 291 GCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG--ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGF 368 (405)
T ss_pred HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhH
Confidence 456789999999999988776655333322 2222 4555556666677776666777788899999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCC-hhHHHHH
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYL 113 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~~~ 113 (147)
.+...++|..++|.+.+.+.+. .| |+..+..
T Consensus 369 ~~~~~~~g~~~g~~~~g~l~~~--~g~~~~~~~~ 400 (405)
T TIGR00891 369 TYQLGNLGGALAPIIGALLAQR--LDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--ccccchhHHh
Confidence 9999999999999999999998 45 7665544
No 136
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.25 E-value=5.1e-11 Score=85.91 Aligned_cols=100 Identities=24% Similarity=0.285 Sum_probs=82.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-------Ccch
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-------PTER 74 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~r 74 (147)
.+++++++||+|+|+.+..+..+.+++........ ++....++..++.|++.+...+...+.++|..+ ++.+
T Consensus 274 ~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (437)
T TIGR00792 274 VLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAE 352 (437)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccch
Confidence 35789999999999999998888877776665542 355566677788888888888888888888765 4568
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
|...++.+....+|..+++.+.+.+.+.
T Consensus 353 G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 353 GLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876
No 137
>PRK10504 putative transporter; Provisional
Probab=99.24 E-value=1.5e-10 Score=84.38 Aligned_cols=100 Identities=22% Similarity=0.212 Sum_probs=81.0
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
++.+++.||+|||+++..+....++...+..... .++.....+..++.|++.+...+..+..+.+..|++.++.+.++.
T Consensus 315 ~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 394 (471)
T PRK10504 315 RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLL 394 (471)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHH
Confidence 5689999999999999988887777766555432 123333445567778888888888889999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhh
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~ 102 (147)
+....+|..+++.+.+.+.+.
T Consensus 395 ~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 395 SMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776
No 138
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.23 E-value=2.1e-10 Score=82.18 Aligned_cols=122 Identities=17% Similarity=0.250 Sum_probs=86.4
Q ss_pred CcchhhhhhhhcchHHHH-HHHHHHHHHHHHhhhc---ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740 2 HIPGGLLAQKFGGKHTLG-FGILSTAIFTLLTPFA---ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 77 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 77 (147)
.+..|+++||+|||+.+. .+.+...+........ ..++.+..++..++.|++.+...+ ....+.|.. +++|+++
T Consensus 274 ~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~ 351 (402)
T TIGR00897 274 NVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAA 351 (402)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHH
Confidence 457899999999888764 2333333332222211 114556666777888887766544 445666765 5689999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHh
Q psy4740 78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCF 127 (147)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (147)
.++.+...+++..++|.+.+.+.+. .+|...+++.+++.++..+...+
T Consensus 352 ~g~~~~~~~lg~~~gp~i~g~l~~~--~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 352 MSVLNLSAGLSAFLAPAIAVLFIGF--FGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 68999999888877665555444
No 139
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.22 E-value=1e-10 Score=83.49 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=96.3
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH-H
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF-V 81 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~ 81 (147)
+..+++.||+|+|+.+.++.++.++........ ++.+.+++.+++.|++..........+..+..+++.+++..+. .
T Consensus 272 ~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~ 349 (396)
T TIGR00882 272 FCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA--TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGF 349 (396)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHH
Confidence 567899999999999998888888777665555 6777788888888887655545555667777888888887766 5
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWC 126 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (147)
+....+|..+++.+.|.+.+. .||+.+|.+.+++.++..+...
T Consensus 350 ~~~~~lg~~~~~~l~G~l~~~--~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 350 QFAKQLAMIFLSTLAGNMYDS--IGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHHHHHhHHHHHHh--cccHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998 6899999998888777655543
No 140
>PRK15075 citrate-proton symporter; Provisional
Probab=99.20 E-value=2.7e-10 Score=82.40 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=70.7
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHH-h-hhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLL-T-PFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
.+..|+++||+|||+.+..+.++..+.... . .....++........++.+++.+...+....+..|.+|+++|+++.+
T Consensus 291 ~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g 370 (434)
T PRK15075 291 LPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFS 370 (434)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchhee
Confidence 356899999999999887765443322211 1 11111333334444455566666666666788999999999999999
Q ss_pred HHHhhhh-hHHHHHHHHHHHHHhhcCCChh
Q psy4740 80 FVFAGNQ-IGTVFSSFLSGFLLKYTDGDWP 108 (147)
Q Consensus 80 ~~~~~~~-~g~~~~~~~~~~l~~~~~~~~~ 108 (147)
+.+.... +++.++|.+.+.+.+..+.+|.
T Consensus 371 ~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~ 400 (434)
T PRK15075 371 LAYSLATAIFGGFTPAISTWLIHVTGDKAA 400 (434)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcCCchH
Confidence 8655444 4577899999999988433333
No 141
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.19 E-value=7.2e-10 Score=79.14 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=107.8
Q ss_pred chhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH-HH
Q psy4740 4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF-VF 82 (147)
Q Consensus 4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~ 82 (147)
+..++.+|+|.|+.++++.++.++=..++++. ++.+.+.+.+.+-++-.+........++.+.+|++..++...+ .+
T Consensus 278 ~~p~li~rig~k~~Lllag~i~~iRi~~~~~~--~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~ 355 (412)
T PF01306_consen 278 FSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA--TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQ 355 (412)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHT
T ss_pred HHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence 56788999999999999999999999999888 9999999999999999999999999999999999998888888 46
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 83 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 83 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
...++|..+.+.++|.++|+ .|.+..|++.+.+.+...+...+..+++++
T Consensus 356 ~~~~~~~~i~s~~~G~lyd~--~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 356 FAKQIGIIILSPLAGYLYDR--IGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp TTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHhhhHHhhHhh--cCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 79999999999999999999 789999999888887777777777665444
No 142
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.18 E-value=8.7e-10 Score=80.07 Aligned_cols=128 Identities=20% Similarity=0.146 Sum_probs=91.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc----ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCC------
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR----QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPP------ 71 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------ 71 (147)
++++|+++||+|+|+++.++.+...+.........+ .++..+.+..+...++.|........++.+.+|+
T Consensus 303 rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~ 382 (462)
T PRK15034 303 RSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRV 382 (462)
T ss_pred HHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcc
Confidence 478999999999999999888777666643322211 2445555554444455555556667777777764
Q ss_pred ---------------cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 72 ---------------TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 72 ---------------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
++-|...|+......+|+.+.|.+.+...+.++ ++...|+...+..++...+.++..-
T Consensus 383 ~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 383 KMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG-SPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred cccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 156678888889999999999988888877754 6888888888888877666655543
No 143
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.17 E-value=1.9e-10 Score=81.42 Aligned_cols=121 Identities=19% Similarity=0.246 Sum_probs=102.1
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
+++++|++.||+|.|+++..+.++..+.++...+. .....+.+.-.+.|...|+.++.+-++..+..|+++-++.+|+
T Consensus 304 g~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~--~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFgl 381 (438)
T COG2270 304 GAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL--EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGL 381 (438)
T ss_pred HHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeeh
Confidence 35678999999999999999999998888877666 5566777888899999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVA 124 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (147)
++.....+..++|.+.+.+.+.++ +-|..+....++..+..+.
T Consensus 382 yaltgra~S~~gp~lv~v~t~iTg-~~r~g~~~i~vll~iGl~~ 424 (438)
T COG2270 382 YALTGRAASFLGPFLVAVITQITG-SSRAGVLSIIVLLLIGLLL 424 (438)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHhhHhh
Confidence 999999999999999999998865 4666665555555443333
No 144
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.17 E-value=6.2e-10 Score=80.50 Aligned_cols=124 Identities=16% Similarity=0.067 Sum_probs=71.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhh--hcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTP--FAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
+++.|+++||+|||+.+....++.++...... ....++....+....+.....+...+....+.+|.+|++.|++++|
T Consensus 296 ~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g 375 (432)
T PRK10406 296 QPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVG 375 (432)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhh
Confidence 35679999999999988776554433322111 1111233222222222222223333456678899999999999999
Q ss_pred HHHhhhhh-HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHh
Q psy4740 80 FVFAGNQI-GTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCF 127 (147)
Q Consensus 80 ~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (147)
+.+...+. .+...|.+.+.+.+. ..|...++..+...++..+..++
T Consensus 376 ~~~~~g~~~~g~~~p~~~~~l~~~--g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 376 LSYAVANALFGGSAEYVALSLKSI--GMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 98775553 344577777755433 24555566555555554444443
No 145
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.16 E-value=8.5e-10 Score=79.04 Aligned_cols=126 Identities=15% Similarity=0.097 Sum_probs=88.4
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc---cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
.+..++++||+++|+.+..+.++..++........ ..+..++.+..++.|++.+...+........ .++++|++..
T Consensus 268 ~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~ 346 (406)
T PRK15402 268 NLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVS 346 (406)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHH
Confidence 35678999999999998888777766666554431 2345666777788888888777666555543 3458999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
+..+.....+..+++.+.+.+.+. .++....+......++..+....+.+
T Consensus 347 ~~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK15402 347 AAMGMLSMLIFTVGIELSKHAYLG--GGNGLFNLFNLANGLLWLLLVRIFLK 396 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC--CchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998877 45554444444444443334333333
No 146
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.14 E-value=7.2e-10 Score=81.87 Aligned_cols=119 Identities=21% Similarity=0.119 Sum_probs=100.2
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 82 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 82 (147)
+..+++.+|+++++.+..+.+..++..+..++. ++.+...+..++.|.+........++.+.+..|++.||+.++++.
T Consensus 272 l~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~ 349 (524)
T PF05977_consen 272 LLLPRLRRRLSSRRLVLLASLLFALALLLLALS--PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQ 349 (524)
T ss_pred HHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHH
Confidence 345677788888888888888888888888887 888888888899999888888888889999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q psy4740 83 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW 125 (147)
Q Consensus 83 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (147)
+....+..+|..+.|.+.+. .|.+..+.+.++..++..+..
T Consensus 350 ~~~~g~~~lGsll~G~la~~--~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 350 MVFFGGMPLGSLLWGFLADH--FGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 788888887776655544443
No 147
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.14 E-value=9e-10 Score=78.57 Aligned_cols=117 Identities=21% Similarity=0.175 Sum_probs=84.9
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhh-cc---cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCC-cchhHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF-AA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPP-TERGKI 77 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~ 77 (147)
++.|++.||+|+|+.+..+..+.++....... .. ..+....+....+.++..+...+.....+.+..++ +++++.
T Consensus 262 ~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~ 341 (390)
T TIGR02718 262 GGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTD 341 (390)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHH
Confidence 46799999999999988776655333222211 10 12333334444555566666667777787777766 889999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy4740 78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121 (147)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 121 (147)
++..++..++|..++|.+++.+.+. .|++..|...+++.++.
T Consensus 342 ~~~~~~~~~lg~~~g~~~~G~l~~~--~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 342 VTAVQSTRDLGELIASSIAGYLTDR--FGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 68988888877766554
No 148
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.13 E-value=2.8e-10 Score=79.76 Aligned_cols=99 Identities=21% Similarity=0.235 Sum_probs=85.9
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc-cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ-SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
.++.+++.||++||+.+..+..+.++........ + +.+..++..++.|++.+...+....++.|..|+++|++..++
T Consensus 264 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 341 (365)
T TIGR00900 264 ALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGA 341 (365)
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3567899999999999888877777777666665 4 467778888999999998889999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhh
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
.+...+++..++|.+.+.+.+.
T Consensus 342 ~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 342 QFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 149
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.12 E-value=9.9e-10 Score=78.20 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=89.2
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 82 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 82 (147)
++.+++.||+|+|+.+..+.+..++........ ++.+.+++..++.|++.+...+....+..+. +++++++..+..+
T Consensus 258 ~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 334 (382)
T PRK11128 258 AFSNRLFRRWSARDLLLLSAICGVVRWGLMGST--TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYS 334 (382)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHH
Confidence 567899999999999998888888877766666 7788888889999999888888888888886 5666788888876
Q ss_pred -hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740 83 -AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 83 -~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (147)
....+|..++|.++|.+.+. .++ ..++..+.+.++
T Consensus 335 ~~~~~~g~~ig~~i~G~l~~~--~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 335 ALAMGGSIAIMTVLSGFLYQH--LGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--ccH-HHHHHHHHHHHH
Confidence 45677889999999999998 566 456665555443
No 150
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.12 E-value=1.1e-09 Score=78.16 Aligned_cols=127 Identities=14% Similarity=0.059 Sum_probs=83.2
Q ss_pred cch-hhhhhhhcchHHHHHHHHHH-HHHHHHhh-hccccc-HHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 3 IPG-GLLAQKFGGKHTLGFGILST-AIFTLLTP-FAARQS-ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 3 ~~~-g~l~d~~gr~~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
|++ ++..||+||||..++...+. +....... .....+ ..+.+....+..+..+...+....+..|..++++++...
T Consensus 56 p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~ 135 (390)
T TIGR02718 56 PLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGN 135 (390)
T ss_pred HHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHH
Confidence 344 44678889888865554332 21122222 111122 333344444455556666666777888888888888888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
+.......+|..+++...+.+.+. .+||..|++.++..++..+..++..|+
T Consensus 136 ~~~~~g~~lG~~~g~~~~~~l~~~--~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 136 AVQIAGVMIGFFGGGAGTLVLFGK--FGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888888888999998888888888 799999999998877655555544444
No 151
>PRK09669 putative symporter YagG; Provisional
Probab=99.11 E-value=1.8e-09 Score=78.41 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=87.6
Q ss_pred Ccchhhhhhh----hcc-hHHHHHHHHHHHHHHHHhhhccc----ccHHHHHHHHHHHhhccccCcccHHHHhhhhc-CC
Q psy4740 2 HIPGGLLAQK----FGG-KHTLGFGILSTAIFTLLTPFAAR----QSANWLIALRFFEGLGEGTTFPALNTLLAQWV-PP 71 (147)
Q Consensus 2 ~~~~g~l~d~----~gr-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~ 71 (147)
.|+.|+++|| +|| |+.++++.+..++...+....+. ......++..++.+.+......+..++.+|+. ++
T Consensus 62 dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~ 141 (444)
T PRK09669 62 DPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP 141 (444)
T ss_pred cceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH
Confidence 5789999998 776 45566676666666655443321 12345555666667766677777888999987 55
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-----CCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 72 TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-----DGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 72 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
++|.+..+......++|..+++.+...+.... ..+|+..+.+.+++.++..+..++..+|+
T Consensus 142 ~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 142 RERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 88998888888888888887776655444321 14688888877777766555555554543
No 152
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.11 E-value=6e-10 Score=80.71 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=80.7
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHH---HHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTA---IFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
++..|+++||+++++....+..... ++..........+.+......++.|.+.............|.+|+++|+++.
T Consensus 304 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 383 (438)
T TIGR00712 304 TLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 383 (438)
T ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeeh
Confidence 4578999999965432222222211 1112111211123333333344445432221122234577999999999999
Q ss_pred HHHHhhhhhHH-HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 79 SFVFAGNQIGT-VFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 79 ~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
|+.+.....++ .++|.+.+.+.++ .+|...+++.....++..+..++..+|++
T Consensus 384 g~~~~~~~~gg~~~gp~l~G~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 384 GFTGLFGYLGGSVAASAIVGYTVDF--FGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhhchHHHhhhhhhcchhHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99988877764 6899999999998 68999998888777777777777766643
No 153
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.08 E-value=6.5e-10 Score=81.41 Aligned_cols=121 Identities=16% Similarity=0.101 Sum_probs=72.3
Q ss_pred Ccchhhhhhhhcch-------HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740 2 HIPGGLLAQKFGGK-------HTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 74 (147)
Q Consensus 2 ~~~~g~l~d~~gr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 74 (147)
+++.|+++||++|| ........+..+........ ++....++..++.+++.+...+...++..+.. +++|
T Consensus 305 ~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~ 381 (476)
T PLN00028 305 RPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA--NSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSL 381 (476)
T ss_pred HhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhc
Confidence 46789999999865 22223333333333333333 44444444455555544444444445555654 5789
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
+...++.+...++|+.+++.+.+ ..+. .+|+..|++.+++.++..++.++.
T Consensus 382 g~~~g~~~~~g~lg~~i~~~l~~-~~~~--~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 382 GVISGLTGAGGNVGAVLTQLLFF-TGSS--YSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hhhhhhhhccccHHHHHHHHHHH-hcCC--ccHhhHHHHHHHHHHHHHHHHHhe
Confidence 99999988877777777776543 1111 369999998887777765555444
No 154
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.08 E-value=8.9e-10 Score=79.00 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=86.6
Q ss_pred hhhhh-hhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhh
Q psy4740 6 GLLAQ-KFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAG 84 (147)
Q Consensus 6 g~l~d-~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 84 (147)
+++.| |++.++.+..+.++.+++....... ++++...+...+.+.+.+...+...+.+.|..|+++|++.+++.+..
T Consensus 264 ~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~ 341 (400)
T PRK11646 264 ARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV--SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLG 341 (400)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHH
Confidence 45555 4666666777777777777666666 66666666777788888877888899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhcC-CC-hhHHHHHHHHHHHHHHHH
Q psy4740 85 NQIGTVFSSFLSGFLLKYTD-GD-WPEIFYLFGILGVLWFVA 124 (147)
Q Consensus 85 ~~~g~~~~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~ 124 (147)
..+|..++|.+++.+.+..+ .+ ....++..+...++..+.
T Consensus 342 ~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 342 LALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999998742 12 244555545554444333
No 155
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.08 E-value=3.9e-09 Score=73.55 Aligned_cols=129 Identities=15% Similarity=0.068 Sum_probs=91.8
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHH-hhhh----cCCcchhHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL-LAQW----VPPTERGKI 77 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~-~~~~----~~~~~r~~~ 77 (147)
++.|.++||+|||+.-+.-+++..+.++.. .. +++..++++|++.|++.+..+..-.++ +.|. +|++..+..
T Consensus 87 ~~~G~laD~~Grk~~cl~~cily~~scl~k-~~--~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~t 163 (354)
T PF05631_consen 87 TFVGSLADRYGRKKACLLFCILYSLSCLTK-HS--SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDT 163 (354)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 568999999999999988888888888643 23 789999999999999999888877775 4554 344444455
Q ss_pred HHHHH-hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 78 GSFVF-AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 78 ~~~~~-~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
++... ..+++-.+.+..++..+.+..+.+-..+|.....+.++..+......+|+..
T Consensus 164 F~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 164 FSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence 55444 3344445556666667776644455778888888877766666655666543
No 156
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.07 E-value=4.4e-09 Score=75.50 Aligned_cols=126 Identities=21% Similarity=0.368 Sum_probs=95.4
Q ss_pred chhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHH----HHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWL----IALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
..+++..|+|.|+++.++.+..++=..+.+... ++.+.. .....+.|+..+..+.....++.+..|++.|+++.+
T Consensus 262 ~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~ 340 (400)
T PF03825_consen 262 FSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQG 340 (400)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHH
Confidence 568889999999999999999888887776652 222222 233456899999999999999999999999999999
Q ss_pred HHHh-hhhhHHHHHHHHHHHHHhhcC----CChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 80 FVFA-GNQIGTVFSSFLSGFLLKYTD----GDWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 80 ~~~~-~~~~g~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
+++. ..++|..++..++|.+.++.+ ..|...+.+.+...++..+...++.+
T Consensus 341 l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 341 LYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9877 578999999999999999742 23445555666655555444444433
No 157
>KOG0569|consensus
Probab=99.07 E-value=4.8e-09 Score=76.37 Aligned_cols=131 Identities=18% Similarity=0.090 Sum_probs=94.7
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc-cc-H--H---HHHHHHHHHhhcccc-CcccHHHHhhhhcCCcch
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-QS-A--N---WLIALRFFEGLGEGT-TFPALNTLLAQWVPPTER 74 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-~~-~--~---~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r 74 (147)
+++.++.||.|||+.++.+..+..+...++..... .+ . + ..+++.++..+..+. .-|...-+.+|++|++.|
T Consensus 323 ~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R 402 (485)
T KOG0569|consen 323 LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSAR 402 (485)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccch
Confidence 46788999999999999998888888877754411 11 1 1 122333333333222 356778889999999999
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH 136 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (147)
..+++.......+...+.....-.+.+. .|- ..|.+..++.++..+..+...||++.+.
T Consensus 403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~--~g~-~~filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 403 SAAQSVATAVNWLSNFIVGFAFPPLQNV--IGP-YVFILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 9999998888888887777777767666 343 6777888888888888888999987654
No 158
>PRK09848 glucuronide transporter; Provisional
Probab=99.06 E-value=7.2e-10 Score=80.47 Aligned_cols=101 Identities=19% Similarity=0.129 Sum_probs=82.2
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc-------ch
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT-------ER 74 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~r 74 (147)
+++++++.||+|+|+.+.++.++..++.....+....+.+.+.+..++.|++.+...+...+..+|..|.+ ++
T Consensus 281 ~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~ 360 (448)
T PRK09848 281 APLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIE 360 (448)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccch
Confidence 35678999999999999999888888777666543245666667778889999988888888888887654 45
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
|...+..+....+|..+++.+.+.+.+.
T Consensus 361 G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 361 GLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999887765
No 159
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.04 E-value=3.6e-09 Score=76.34 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=77.6
Q ss_pred Ccchhhhhhhhcc-hHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhh--------hhcCCc
Q psy4740 2 HIPGGLLAQKFGG-KHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLA--------QWVPPT 72 (147)
Q Consensus 2 ~~~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~--------~~~~~~ 72 (147)
++++|+++||+|+ |+++..+.+...+......+. ++++.+.+.+++.|++.+...+...+... |.....
T Consensus 55 ~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~ 132 (418)
T TIGR00889 55 PILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV--TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDF 132 (418)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcC
Confidence 6789999999965 778888888777777777766 78888888999888877766655544432 222223
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 73 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 73 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
.|.+..| .+|..++|.+++.+... ..|. +|++.++..++..+. .+..||.|
T Consensus 133 ~~~r~~G------~lG~~ig~~l~g~l~~~--~~~~-~f~~~~~~~~~~~~~-~~~~~e~~ 183 (418)
T TIGR00889 133 PPIRVMG------TIGFIAAMWAVSLLDIE--LSNI-QLYITAGSSALLGVF-ALTLPDIP 183 (418)
T ss_pred CCeeeeh------hHHHHHHHHHHHHhccc--chhH-HHHHHHHHHHHHHHH-HhcCCCCC
Confidence 3444444 36788888888877222 2344 455555555554443 34556654
No 160
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.04 E-value=7e-09 Score=74.35 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=76.9
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHh---hhcccccHHHHHHHHH----HHhhccccCcccHHHHhhhhcCCcch
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLT---PFAARQSANWLIALRF----FEGLGEGTTFPALNTLLAQWVPPTER 74 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----l~g~~~~~~~~~~~~~~~~~~~~~~r 74 (147)
.++.|++.||+|+|+.+..+.....+..... ... .++.+.+++..+ ..|++.+...+....++.+.+|.+.
T Consensus 263 ~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~- 340 (402)
T PRK11902 263 ALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ- 340 (402)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH-
Confidence 3567999999999998877666655554333 222 134444444443 3444455445555556666666444
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWC 126 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (147)
.+..+...+++...+..+++.+.+. .||+..|.+.+++.++..+..+
T Consensus 341 ---~~~~~~~~~l~~~~~~~~~G~l~~~--~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 341 ---YALLSALASVGRVYVGPTSGYLVEA--YGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHH
Confidence 4555555667777677789999998 7999999998888877555443
No 161
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.3e-08 Score=72.29 Aligned_cols=125 Identities=23% Similarity=0.292 Sum_probs=95.7
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
|++..|+++|| +.|+.+.....+.++......+.. ++.+...+..++.|+.............++ ..+|.+..+.++
T Consensus 263 Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl 339 (394)
T COG2814 263 GNLLGGRLADR-GPRRALIAALLLLALALLALTFTG-ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSL 339 (394)
T ss_pred HHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHH
Confidence 35688999999 888888888777766666655442 444555666666777766555555555555 446899999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
+....|+|..+|..+++.+.++ .++....++.++..+......+...+
T Consensus 340 ~~aa~nlgia~GA~lGG~v~~~--~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 340 NVAAFNLGIALGAALGGLVLDA--LGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 89999999999888876666555433
No 162
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.02 E-value=7.1e-09 Score=75.94 Aligned_cols=131 Identities=9% Similarity=0.012 Sum_probs=85.3
Q ss_pred Ccchhhhhh----hhcc-hHHHHHHHHHHHHHHHHhhhccc--c--cHHHHHHHHHHHhhccccCcccHHHHhhhhc-CC
Q psy4740 2 HIPGGLLAQ----KFGG-KHTLGFGILSTAIFTLLTPFAAR--Q--SANWLIALRFFEGLGEGTTFPALNTLLAQWV-PP 71 (147)
Q Consensus 2 ~~~~g~l~d----~~gr-~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~ 71 (147)
.|+.|+++| |+|| |+.++++.+..++...++...+. . .+..+.+..++.+++.........++..|.. ++
T Consensus 59 dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~ 138 (473)
T PRK10429 59 DPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDK 138 (473)
T ss_pred hchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCH
Confidence 578999999 6698 56666777777776655543210 1 1334455556677788888888899999998 68
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-----CCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 72 TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-----DGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 72 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
++|.+..+......++|..+.+.+...+.+.. ..+|+....+.+++.++..+...+..+|+
T Consensus 139 ~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 139 REREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 89999888877777777666655544332221 12566666666666655455555445554
No 163
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.02 E-value=2.4e-09 Score=85.49 Aligned_cols=115 Identities=22% Similarity=0.268 Sum_probs=91.2
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+++++.+.++.++.+++.+..... .+.+.+++..++.|++.+...+...+++.+..|++.|++++++.
T Consensus 286 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~ 363 (1146)
T PRK08633 286 SLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAAN 363 (1146)
T ss_pred HHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHH
Confidence 4578899999999988888888777777776666 67777778889999999888888899999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGV 119 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 119 (147)
+....+|..+++.+++.+... ..++...+++.+.+.+
T Consensus 364 ~~~~~lg~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 364 NFLQNVGMLLFLALTTLFSGL-GLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHH
Confidence 999999998888777766543 2355556665554443
No 164
>KOG2816|consensus
Probab=99.01 E-value=4.9e-09 Score=76.29 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=101.9
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhh--ccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGL--GEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
.+..|.++||+|||..+.+..+...+..+...+. . ++ +.+ +.+. +.+.......++++|....++|....+
T Consensus 79 s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~g 151 (463)
T KOG2816|consen 79 SPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--G-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIG 151 (463)
T ss_pred HhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--H-HH-Hhh---hcccccchhhhhhhhhhheeeccchhHHHHHHH
Confidence 4678999999999999999888888877776654 2 22 322 3443 344556778889999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 80 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+.+.....+..++|.+++.+.+. .+.-..|.+..+...+..+...+..||+..
T Consensus 152 ll~~~~~~~~~~~p~~~~~~~~~--~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 152 LLSGTFGAGLVIGPALGGYLVKF--LGIALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence 99999999999999999999988 788899999999999888888888888544
No 165
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.00 E-value=3.5e-09 Score=77.48 Aligned_cols=124 Identities=20% Similarity=0.176 Sum_probs=87.4
Q ss_pred cchhhhhhhhc-----chHHHHHHHHHHH-HHHHHhhhccccc-HHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh
Q psy4740 3 IPGGLLAQKFG-----GKHTLGFGILSTA-IFTLLTPFAARQS-ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG 75 (147)
Q Consensus 3 ~~~g~l~d~~g-----r~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 75 (147)
+++|.++||++ ||+.+.++.++.. +........ ++ .....+..++.+++.+...+...++..|..+ +++.
T Consensus 78 ~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~--~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~ 154 (468)
T TIGR00788 78 PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGK--VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS 154 (468)
T ss_pred HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC
Confidence 56999999997 7777777766653 332222222 33 3344447788888888888899999999988 5444
Q ss_pred HH---HHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 76 KI---GSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 76 ~~---~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
.. .+..+...++|..+++.+++.+.+. .+|+..|++.+++.++. .....+.+|+
T Consensus 155 ~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~--~~~~~~f~~~a~l~ll~-~~~~~~~~E~ 211 (468)
T TIGR00788 155 AGPSLVSWMWGASATGGLISSLLGGPLLDK--TLTRILFLITAALLLLQ-LFVSNLSKER 211 (468)
T ss_pred cCCCeeeHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHH-HHHHHhcccc
Confidence 33 3344444568999999999999888 79999999988887765 3334455554
No 166
>TIGR00895 2A0115 benzoate transport.
Probab=99.00 E-value=1.1e-09 Score=77.67 Aligned_cols=95 Identities=23% Similarity=0.311 Sum_probs=74.7
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh-cccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF-AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
.++.+++.||+|||+.+.... +..+....... . ++....++..++.|++.+...+....++.|.+|+++|++..++
T Consensus 302 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 378 (398)
T TIGR00895 302 SIIFGWLADRLGPRVTALLLL-LGAVFAVLVGSTL--FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGW 378 (398)
T ss_pred HHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 457899999999995544333 33333333322 3 5566677788889999888889999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q psy4740 81 VFAGNQIGTVFSSFLSGFL 99 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l 99 (147)
.+....+|..++|.+.|.+
T Consensus 379 ~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 379 AIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHhHHhc
Confidence 9999999999999998865
No 167
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.99 E-value=1.1e-08 Score=72.98 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=80.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHH-HhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNT-LLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~ 80 (147)
+++.+++.||+|+|+.+..+..+.+++.+...... ++.+...+..++.+.+.....+.... ...+..+++.++.. .
T Consensus 252 ~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~ 328 (382)
T PRK10091 252 NLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG-GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--G 328 (382)
T ss_pred hHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--H
Confidence 56789999999999998888777777665543321 34444555555666655444443333 34444444555544 3
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
.+....+|..++|.+++.+.+.. .+|+..+.+.+...+.........
T Consensus 329 ~~~~~~~g~~~Gp~~~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 329 GQIAFNLGSAIGAYCGGMMLTLG-LAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHHHHHHHHHHHHhHHHHHcc-cCcchHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999998853 478988888776666544444433
No 168
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.97 E-value=2.1e-08 Score=67.47 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=74.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc-----ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-----QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK 76 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~ 76 (147)
.++.|.+.|++|++.++.++.+...++..+.....+ .+++.+.+..++.|.+.+...........+.|| ++||.
T Consensus 53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~ 131 (250)
T PF06813_consen 53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGT 131 (250)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCc
Confidence 357899999999999999999999999988765521 245555555566666655544555555556787 58999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 77 IGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
+.++.-....+++.+-..+...+.+.
T Consensus 132 vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 132 VVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred eehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 99999988888888777777666555
No 169
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.97 E-value=1.1e-08 Score=72.36 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=91.0
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc-----ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-----QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK 76 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~ 76 (147)
.+.+|+++||+|.+|++.......+++........+ .+....+...+..++..+.........+...+|+ +-|.
T Consensus 271 Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~ 349 (417)
T COG2223 271 RPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGA 349 (417)
T ss_pred HhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhH
Confidence 467899999999999999888888887777655421 2233333333333333333334455556666653 7789
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 77 IGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
..|+.....++|+.+-|...+...+.++ .+...|++.....++..+..+....+
T Consensus 350 v~G~vga~G~lGGf~lp~~~g~~~~~tg-~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 350 VTGIVGAIGGLGGFFLPLAFGVSLDLTG-SYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHHHHhccccccchhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999865 69999999888888766655554433
No 170
>PRK09669 putative symporter YagG; Provisional
Probab=98.96 E-value=1.2e-08 Score=74.18 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=77.9
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCC-------cchh
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPP-------TERG 75 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r~ 75 (147)
+++++++||+|+|+.+.++.+..++..........++.+.+++..++.|++.+...+...+.++|..+. +..|
T Consensus 282 ~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g 361 (444)
T PRK09669 282 LLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDG 361 (444)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcch
Confidence 467899999999999988877665544333333235666677778889999999999999999998752 3345
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhc
Q psy4740 76 KIGSFVFAGNQIGTVFSSFLSGFLLKYT 103 (147)
Q Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 103 (147)
...+..+....+|..+++.+.+.+.+..
T Consensus 362 ~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 362 LVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6778888899999999999999988763
No 171
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.96 E-value=2.1e-09 Score=77.35 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=71.6
Q ss_pred CcchhhhhhhhcchHH-HHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHT-LGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
.+..|+++||+++|+. +........+...+.... ++....+....+.+.+.....+.......|.+|+++|+++.++
T Consensus 296 ~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~ 373 (412)
T TIGR02332 296 MIWWSRHSDRLKERKHHTALPYLFAAAGWLLASAT--DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAV 373 (412)
T ss_pred HHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHH
Confidence 3568999999997764 333333333332222122 2222222222222333222233334455678999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG 118 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 118 (147)
.+...++|..++|.+.+.+.+..+ +|++.+++.++..
T Consensus 374 ~~~~~~~g~~~~p~~~g~i~~~~g-~~~~~~~~~~~~~ 410 (412)
T TIGR02332 374 INATGNIGSALSPFLIGILKDATG-SFNSGLWFVAALL 410 (412)
T ss_pred HHHhhhhhhhhhhhhcccccccCC-CCchhHHHHHHHH
Confidence 999999999999999999988732 5898888766543
No 172
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.96 E-value=2.7e-09 Score=77.14 Aligned_cols=130 Identities=19% Similarity=0.364 Sum_probs=97.2
Q ss_pred Ccchhhhhh----hhcchHH-HHHHHHHHHHHHHHhhhccc--c----cHHHHHHHHHHHhhccccCcccHHHHhhhhcC
Q psy4740 2 HIPGGLLAQ----KFGGKHT-LGFGILSTAIFTLLTPFAAR--Q----SANWLIALRFFEGLGEGTTFPALNTLLAQWVP 70 (147)
Q Consensus 2 ~~~~g~l~d----~~gr~~~-~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 70 (147)
.|+.|.++| |+||||. ++.+.+..+++..++....+ . ...++.+..++..++......+..++..|..+
T Consensus 54 dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~ 133 (428)
T PF13347_consen 54 DPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTP 133 (428)
T ss_pred CCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccc
Confidence 578999999 8996655 45677887777777665411 1 22344666677788888889999999999987
Q ss_pred -CcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-----CChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 71 -PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD-----GDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 71 -~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
+++|.+..+.......+|..+...+...+.+..+ .+|++...+.+++.++..+...+..+|
T Consensus 134 ~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 134 DPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred cHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 4789999999888888888766677666654332 169999888888888877777777776
No 173
>KOG3762|consensus
Probab=98.93 E-value=2.5e-09 Score=77.81 Aligned_cols=118 Identities=16% Similarity=0.266 Sum_probs=103.6
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 82 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 82 (147)
++.+++.+|+|+-+++.+++....+=....... +|+|+.+-..++.|+..+..+.+..+|++...||+.|.++.++..
T Consensus 424 ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~ 501 (618)
T KOG3762|consen 424 FFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQ 501 (618)
T ss_pred HHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHH
Confidence 467899999999999999988888888877788 999999999999999999999999999999999999999999965
Q ss_pred h-hhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q psy4740 83 A-GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVA 124 (147)
Q Consensus 83 ~-~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (147)
. ...+|..+|.++++.+.++ .+-+..|...++.+++.++.
T Consensus 502 g~f~GlG~g~GslIGG~~v~~--fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 502 GIFHGLGKGLGSLIGGFVVER--FGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred HHhcccCcchhhhhhhhhhee--ehhHHHHHHHHHHHHHHHHH
Confidence 5 7889999999999999988 67788888777776664444
No 174
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.92 E-value=5.1e-09 Score=76.46 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=83.8
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc--ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA--ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
+++.|++.||+|||+.+..+..+.+++...+... ...++.......++.|++.+...+.......+..|+++|+++.+
T Consensus 308 ~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~ 387 (485)
T TIGR00711 308 SPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSS 387 (485)
T ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHH
Confidence 4678999999999999998888888877766522 22355666677888999988887777777888899999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 80 FVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
+.+...++|..+++.+.+.+.++
T Consensus 388 ~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 388 LSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988775
No 175
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.91 E-value=5.4e-08 Score=68.02 Aligned_cols=122 Identities=19% Similarity=0.281 Sum_probs=105.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++..+++.|+|.++.+..++++.+++..+=... +...++.+-.+.|.+.+......++.+.+.|| ++-+..+++|
T Consensus 64 ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~---~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglY 139 (395)
T COG2807 64 APAAPRLARRFGEERSLFLALLLIAAGILIRSLG---GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLY 139 (395)
T ss_pred HhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHH
Confidence 4678899999999999999999999998875443 45677888889999999889999999999997 5668999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
....+++..+++.+.-.+.++. .+||....+.+.+.++..+.++..
T Consensus 140 s~sl~~~aaLaa~lavpla~~~-~gW~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 140 STSLGAGAALAAALAVPLAQHS-GGWRGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred HHHHHHHHHHHhhhhhHHHHhh-ccHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998884 489999999999998877666554
No 176
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.91 E-value=2.2e-08 Score=71.43 Aligned_cols=106 Identities=13% Similarity=-0.019 Sum_probs=64.0
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.+++.||+|||+.+..+..+..++....... ++....+....+.+.+.+...+. ....+..|.++|+ +..
T Consensus 256 ~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~---g~~ 328 (392)
T PRK10473 256 SFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS--PSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSLRA---GVA 328 (392)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccc---cHH
Confidence 3567899999999999998888887777766655 33333333333433333333322 3334455655554 444
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGI 116 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 116 (147)
.....++..+++.+++.+.+. .++.......+.
T Consensus 329 ~~~~~~~~~~g~~~~~~l~~~--~g~~~~~~~~~~ 361 (392)
T PRK10473 329 SSTLGIAQVCGSSLWIWLAAV--LGISAWNMLIGI 361 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hccchhHHHHHH
Confidence 445567777788888888776 455543333333
No 177
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.91 E-value=7.7e-09 Score=76.16 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=83.1
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
.++.|++.||+|+|+.+..+.++.+++....... ..++.+......++.|++.+...+.....+.+..|+++++.+.++
T Consensus 312 ~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~ 391 (495)
T PRK14995 312 GPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAI 391 (495)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHH
Confidence 4678999999999999888888877776655433 123455566778889999998888888888999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhh
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
.+...++|..+|+.+.+.+.+.
T Consensus 392 ~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 392 ETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887653
No 178
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.91 E-value=2.9e-08 Score=70.59 Aligned_cols=116 Identities=14% Similarity=0.096 Sum_probs=77.7
Q ss_pred hhhhhhhhcch---HHHHH-HHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 5 GGLLAQKFGGK---HTLGF-GILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 5 ~g~l~d~~gr~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
.++++||.+|| +.... ...+.++........ .+....++...+.+++....++....+.+|.+|++.|+++.|+
T Consensus 243 ~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~ 320 (368)
T TIGR00903 243 VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE--LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGA 320 (368)
T ss_pred HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccch
Confidence 46778887654 33222 333333333333333 3333344455556666666667788899999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWC 126 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (147)
.+...++++..+|.+.+.+.. +.+..|.+.+...++..+...
T Consensus 321 ~~~~g~~~~~~~~~~~~~~~~----~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 321 IGFTSRAISVALALAAMLFIS----SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887762 566677777777666555543
No 179
>PRK11462 putative transporter; Provisional
Probab=98.90 E-value=4.8e-08 Score=71.43 Aligned_cols=131 Identities=17% Similarity=0.122 Sum_probs=88.6
Q ss_pred Ccchhhhhhh----hcchH-HHHHHHHHHHHHHHHhhhccc--cc--HHHHHHHHHHHhhccccCcccHHHHhhhhcC-C
Q psy4740 2 HIPGGLLAQK----FGGKH-TLGFGILSTAIFTLLTPFAAR--QS--ANWLIALRFFEGLGEGTTFPALNTLLAQWVP-P 71 (147)
Q Consensus 2 ~~~~g~l~d~----~gr~~-~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~ 71 (147)
.|+.|.++|| +|||| .++++.+..++...++...+. .+ ...+.+..++..++......+..++.+|..+ +
T Consensus 62 Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~ 141 (460)
T PRK11462 62 DPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDP 141 (460)
T ss_pred hhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH
Confidence 3678999996 68764 455676777777666554421 11 3345555566777888888888999999876 6
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-----CChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 72 TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD-----GDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 72 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
++|.+..+......++|..+++.+...+.+..+ .+|+....+.+++.++.....+...+|.
T Consensus 142 ~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 142 TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 899999999998888888888777655554321 3577766666666655544444444443
No 180
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.89 E-value=2.9e-08 Score=71.08 Aligned_cols=112 Identities=18% Similarity=0.091 Sum_probs=78.5
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc-hhHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE-RGKIGSFV 81 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~ 81 (147)
+..+++.||+++|+.+..+... ++........ ++++...+..++.|++.+...+...+.+.|..|++. +|+..++.
T Consensus 259 ~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~--~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~ 335 (393)
T PRK11195 259 GAAARLVTLETVLRVLPAGILM-GLVVLLMALQ--HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQ 335 (393)
T ss_pred HHHHHHhcCCcccchHHHHHHH-HHHHHHHHHH--hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHH
Confidence 4567788888888877776433 3333333333 556666677778899888877778888888766654 79999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (147)
+...+++..++..+.+.+... +-+..+++.+...+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 371 (393)
T PRK11195 336 NFNENLAMLLMLGLYSLLVKL---GVPVVAVIVGFGLLV 371 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999999998866433 555555554433333
No 181
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.89 E-value=3.4e-09 Score=75.16 Aligned_cols=129 Identities=18% Similarity=0.180 Sum_probs=93.7
Q ss_pred CCcchhhhhhhh--cchHHHHH-HHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740 1 MHIPGGLLAQKF--GGKHTLGF-GILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 77 (147)
Q Consensus 1 ~~~~~g~l~d~~--gr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 77 (147)
|.+++||++||. |||....+ .++...++.......+.+|+.+..++.++.|+..-+-.-.......|..|++.-|++
T Consensus 304 G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA 383 (448)
T COG2271 304 GTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTA 383 (448)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccch
Confidence 357899999995 67755443 444444444444455445677888888888887665555666778999999999999
Q ss_pred HHHHHhhhhh-HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 78 GSFVFAGNQI-GTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 78 ~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
.|....+.-+ |...+....+.+.+. .||...|++..+.+++..+....+...
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~--~gW~g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADT--WGWDGGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEec--CCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 9998887777 777777777777777 799999998877777766655555443
No 182
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.88 E-value=5.2e-08 Score=69.84 Aligned_cols=113 Identities=17% Similarity=0.112 Sum_probs=81.3
Q ss_pred cchhhhhhhhcchHHHHHHHHH-HHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILS-TAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
++.+++.||.+ |+.+..+..+ ......+.... ++.+.+....++.|++.+...+.....+.+..| +++++..+..
T Consensus 270 ~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 345 (394)
T PRK10213 270 SLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG--SDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQ 345 (394)
T ss_pred HHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHH
Confidence 46778888854 4444433333 33333433333 556667778888999888888888888888886 5567777888
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 121 (147)
....++|..+|+.++|.+.+. .|++..++..++..++.
T Consensus 346 ~~~~~lg~~~G~~l~G~l~~~--~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 346 VAVIQLANTCGAAIGGYALDN--IGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cChhhHHHHHHHHHHHH
Confidence 888899999999999999998 68888887776655443
No 183
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.88 E-value=3.8e-08 Score=72.26 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=92.5
Q ss_pred hhhhh-hcchHHH--HHHHHHHHHHHHHhhhc-------ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhH
Q psy4740 7 LLAQK-FGGKHTL--GFGILSTAIFTLLTPFA-------ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK 76 (147)
Q Consensus 7 ~l~d~-~gr~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~ 76 (147)
++.|| .+++... .+|.++.+++....... ...++++++...++.++++....|...+++.|..|++.||+
T Consensus 338 ~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~ 417 (475)
T TIGR00924 338 RLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQ 417 (475)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHH
Confidence 44444 3334433 66777777776665531 12578889999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 77 IGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
++++......+|..+++.+....... .+|...|...+...++..+..++..|
T Consensus 418 ~~g~~~l~~~~g~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 418 MLGMWFLAQAMGSLLGGYLATFGAVP--QGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888876555 57887777777766665555544433
No 184
>KOG2325|consensus
Probab=98.87 E-value=2.5e-08 Score=72.50 Aligned_cols=133 Identities=18% Similarity=0.235 Sum_probs=99.0
Q ss_pred CCcchhhhhhhhcc-hHHHHHHHHHHHHHHHHhhhc-c-cc-cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhH
Q psy4740 1 MHIPGGLLAQKFGG-KHTLGFGILSTAIFTLLTPFA-A-RQ-SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK 76 (147)
Q Consensus 1 ~~~~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~ 76 (147)
+++..|+++.|.+. |+-++.+.++.++++++.... . ++ ..+.++++|++.|+|.+. ....-.++++....++|.+
T Consensus 87 ~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~r 165 (488)
T KOG2325|consen 87 FSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPR 165 (488)
T ss_pred cchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHH
Confidence 35778899999885 777888999999999988333 2 12 568899999999998764 4456788888888889999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhcC-----------CChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 77 IGSFVFAGNQIGTVFSSFLSGFLLKYTD-----------GDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+++....+..+|.++||.++..+..-.. .-+..+-|+.+...++.++...+..+|.++
T Consensus 166 A~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 166 AFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 9999888888888888888766544211 124456677777777777777777776543
No 185
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.86 E-value=2.4e-07 Score=70.35 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=97.9
Q ss_pred cchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhcccc------cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc---
Q psy4740 3 IPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQ------SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT--- 72 (147)
Q Consensus 3 ~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--- 72 (147)
.++|+++|+ +|+++.+.++.++..++..+......+ .....+++-.+..+|.|+.-+...+...|.++++
T Consensus 41 ilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~ 120 (654)
T TIGR00926 41 LIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLS 120 (654)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchh
Confidence 568999996 699999999999999988877654211 1233556777888899999999999999998754
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-----CCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 73 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-----DGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 73 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
+|...+.+++...++|+.+++.+...+.+.. ..+|...|.+.++..++..+.....
T Consensus 121 ~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g 181 (654)
T TIGR00926 121 LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAG 181 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 3677888899999999999999988886441 1369999999888888766555443
No 186
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.86 E-value=3.6e-08 Score=68.58 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=74.2
Q ss_pred ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc--------------
Q psy4740 38 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-------------- 103 (147)
Q Consensus 38 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------------- 103 (147)
.++..+++.-++.|.|.+...+..+.++++..|+|++.+.+++.+..+++|..++|.+++.+....
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 678899999999999999999999999999999999999999999999999999999999877431
Q ss_pred CCChhHHHHHHHHHHHHHHHH
Q psy4740 104 DGDWPEIFYLFGILGVLWFVA 124 (147)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~ 124 (147)
...|+++|++.+.+..+..+.
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~ 108 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAII 108 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 036899988666665544443
No 187
>KOG2563|consensus
Probab=98.85 E-value=3e-08 Score=70.94 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=101.9
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc----ccHH--HHHHHHHHHhhccccCcccHHHHhhhhcCCcchhH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR----QSAN--WLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGK 76 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~ 76 (147)
+.+.|+.||+|-|..++++....++++.+-..+.. +.++ ....++.+.+.++-...........-||++++|..
T Consensus 97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~ 176 (480)
T KOG2563|consen 97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAI 176 (480)
T ss_pred hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhh
Confidence 46789999999999999999999999988766532 2344 66788899999888777766777888999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhc----CCChhH--HHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy4740 77 IGSFVFAGNQIGTVFSSFLSGFLLKYT----DGDWPE--IFYLFGILGVLWFVAWCFLCYNDPASHPY 138 (147)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~l~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (147)
+..+..+...+|..++.++...+..+. +..|.. .|+....+.++.+....+..+++|+.++.
T Consensus 177 A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps 244 (480)
T KOG2563|consen 177 ATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS 244 (480)
T ss_pred hhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 999999999999999888888777654 234543 45545555554445555555565555443
No 188
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.85 E-value=2.4e-08 Score=73.14 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=92.1
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc--------cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--------RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 74 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 74 (147)
...+++.+|++.|+++.++.++.+++........ .++.+......++.+++.+..+.....++++..|++.+
T Consensus 306 ~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~e 385 (468)
T TIGR00788 306 GGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCE 385 (468)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCce
Confidence 4566777899999999999988888775543210 02223444556777888888888899999999999999
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-----CChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTD-----GDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
++..++..+..++|..+++.+++.+.++.+ .+..+...+......+..+....+.|+
T Consensus 386 gt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 386 SSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999988743 233333333333333333444447775
No 189
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.81 E-value=1.2e-07 Score=64.25 Aligned_cols=118 Identities=32% Similarity=0.580 Sum_probs=89.8
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCC-cchhHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPP-TERGKIGSFV 81 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~ 81 (147)
++.|.++||+|||+.+..+......+..........+...+++.|...|++.+...+....++.|..|+ ++|+...+..
T Consensus 57 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (338)
T COG0477 57 LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLV 136 (338)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 578999999999988887776555555555555112478888999989999998899999999999988 7888888887
Q ss_pred Hh-hhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740 82 FA-GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 82 ~~-~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (147)
.. ...++..+++.+++.+......+|+..|.........
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 137 TLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 77 5778888888777666544235788876666655543
No 190
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.80 E-value=3e-08 Score=69.78 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=71.8
Q ss_pred Ccchhhhhhhhc-chHHHH-HHH-HHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKFG-GKHTLG-FGI-LSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~g-r~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
+++.|++.||.. +|+... ... ....+...........+.....+..++.|.......+....+..|.+|+++|+++.
T Consensus 269 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 348 (379)
T TIGR00881 269 TLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAA 348 (379)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHH
Confidence 457889999864 333222 211 11122222222211134445555666677655555555677889999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHH
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIF 111 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 111 (147)
++.+...++|..++|.+.+.+.+. .||++.|
T Consensus 349 g~~~~~~~~g~~~~~~~~g~l~~~--~g~~~~f 379 (379)
T TIGR00881 349 GFVGFFAYLGGILAGLPLGYLADG--FGWAGAF 379 (379)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHh--hcccccC
Confidence 999999999999999999999998 6787643
No 191
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.79 E-value=5.6e-08 Score=67.63 Aligned_cols=109 Identities=13% Similarity=0.118 Sum_probs=80.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
.+..+++.||+|+|+.+.++..+.++...+.... ++.. ....-++.|++.+..+|...+...+..|++ .+++.++.
T Consensus 195 r~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~--~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~ 270 (310)
T TIGR01272 195 RFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT--HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL 270 (310)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH
Confidence 4567899999999999888877777766555444 3322 233555789999999999999998887754 44555664
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGIL 117 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 117 (147)
....+|..+.|.+.|.+.+. .+.+..|++..+.
T Consensus 271 -~~~~~Gg~i~P~l~G~lad~--~g~~~a~~v~~~~ 303 (310)
T TIGR01272 271 -CLAIVGGAIVPLLQGSLADC--LGIQLAFALPVPC 303 (310)
T ss_pred -HHHHhcchHHHHHHHHHHHh--ccchHHHHHHHHH
Confidence 56678999999999999987 5778777754433
No 192
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.79 E-value=2.7e-08 Score=72.90 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=77.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh---cccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-------C
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF---AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-------P 71 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~ 71 (147)
.+++++++||+|+|+.+.++..+.+++...... ....+.+.+++..++.|++.+...+...++++|..+ .
T Consensus 283 ~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~ 362 (473)
T PRK10429 283 LILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGI 362 (473)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCc
Confidence 357899999999999998887776655554432 222455666677788888888888888889999865 3
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 72 TERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 72 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
++.|..++.......++..+++.+.+.+.+.
T Consensus 363 R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~ 393 (473)
T PRK10429 363 RCESIAYSVQTMVVKGGSAFAAFFIGVVLGL 393 (473)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888889999999999999988765
No 193
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.79 E-value=4e-11 Score=86.88 Aligned_cols=133 Identities=19% Similarity=0.152 Sum_probs=89.7
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhh--hc-cccc----HHHHHHHHHHHhhccc-cCcccHHHHhhhhcCCcch
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTP--FA-ARQS----ANWLIALRFFEGLGEG-TTFPALNTLLAQWVPPTER 74 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~--~~-~~~~----~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r 74 (147)
+....+.||+|||+.++.+....++....++ .. ..++ ....++.-.+.....+ +..+....+.+|.+|++.|
T Consensus 304 ~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R 383 (451)
T PF00083_consen 304 LLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVR 383 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccc
Confidence 4556889999999999998888877777664 11 1111 1112222222222222 3345566888999999999
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP 137 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (147)
.++.++......++..+++.+...+.+. .+-...+.+.+.+.++..+..+++.||++.++.
T Consensus 384 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~--~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l 444 (451)
T PF00083_consen 384 STGIGLSYAVGRIGGFIIPFLFPYLFNN--LGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTL 444 (451)
T ss_pred cccccccccccccccccccccccccccc--ccccccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence 9999999998889998888887777665 332345566666666666777788888876543
No 194
>KOG2504|consensus
Probab=98.78 E-value=9.1e-09 Score=75.87 Aligned_cols=126 Identities=23% Similarity=0.276 Sum_probs=105.5
Q ss_pred CCcchhhhhhhhc--chHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 1 MHIPGGLLAQKFG--GKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 1 ~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
+.+..|+++|+.. ++.+..++.+...+....+++. +++..++..-++.|+..|.........+.|..+.++-..+.
T Consensus 349 gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~--~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~ 426 (509)
T KOG2504|consen 349 GRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA--TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAY 426 (509)
T ss_pred hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHH
Confidence 3578899999988 4445556677777777777777 88988999999999999998888888999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC 129 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (147)
|+......++..++|.+.+.+.+.++ +|...|+..++..++....+....
T Consensus 427 Gl~l~~~gi~~l~gpPiag~~~d~tg-~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 427 GLLLLFQGIGALVGPPIAGLLYDITG-NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHhHHHHHcCcccceeeeeccC-CeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999999888854 599999999888887665554443
No 195
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.78 E-value=6.4e-08 Score=70.65 Aligned_cols=89 Identities=15% Similarity=0.202 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-CChhHHHHHHHHH
Q psy4740 39 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD-GDWPEIFYLFGIL 117 (147)
Q Consensus 39 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 117 (147)
+....++...+.+.+.+...+.......|..| +.+|...++.+....+++.++|.+.+.+.+.+. .+|+..|.+.+..
T Consensus 360 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~ 438 (465)
T TIGR00894 360 AFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFV 438 (465)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHH
Confidence 33334444444455444444544455556665 489999999999999999999999998876532 2488889888877
Q ss_pred HHHHHHHHHhh
Q psy4740 118 GVLWFVAWCFL 128 (147)
Q Consensus 118 ~~~~~~~~~~~ 128 (147)
.++..+.....
T Consensus 439 ~~i~~i~~~~~ 449 (465)
T TIGR00894 439 NILCVIFYLIF 449 (465)
T ss_pred HHHHHHHeeee
Confidence 77765554443
No 196
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.78 E-value=1.2e-07 Score=68.71 Aligned_cols=101 Identities=26% Similarity=0.263 Sum_probs=88.0
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCC-------cch
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPP-------TER 74 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r 74 (147)
.+++++++||+|+|+.+..+..+.+++..+..+...++.+.+++..++.|++.+.......+.++|..+. ++.
T Consensus 277 ~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~ 356 (428)
T PF13347_consen 277 SPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRRE 356 (428)
T ss_pred HHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCch
Confidence 3678999999999999999999999999888777435888899999999999999999999999998863 446
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
|...+.......++..+++.+.+.+.+.
T Consensus 357 g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 357 GMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999998887765
No 197
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.76 E-value=5.9e-08 Score=71.67 Aligned_cols=121 Identities=20% Similarity=0.244 Sum_probs=84.7
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHhhhccc-------ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-------QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 6 g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
+++.||+++.+.+.++.++.+++......... -+.++++...++.|+++....|...+++.+..|++.||+.+
T Consensus 341 ~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~ 420 (500)
T PRK09584 341 NKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIM 420 (500)
T ss_pred HHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHH
Confidence 55566666667788888888888877655411 12557888999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHHHH
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYT--------DGDWPEIFYLFGILGVLWFVAWC 126 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 126 (147)
|.+.....+|..++..+.+...... ..++.+.|...++..++..+..+
T Consensus 421 g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~ 476 (500)
T PRK09584 421 GSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML 476 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9887766666666555554221100 01356777766666554333333
No 198
>PRK11043 putative transporter; Provisional
Probab=98.75 E-value=2.1e-07 Score=66.66 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=69.2
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhh---hcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTP---FAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
+..+++.||+++|+.+........+...... ....++....++...+.|.+.+..++.......|..| ++|+++.+
T Consensus 256 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g 334 (401)
T PRK11043 256 YGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAA 334 (401)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHH
Confidence 3467888999999876555444444333221 1112345555566677788888888887777777765 68999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 80 FVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
+.+.....+...++.+.+.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 335 LQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHccCC
Confidence 99998888888888888888664
No 199
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.75 E-value=4.4e-08 Score=69.02 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=73.2
Q ss_pred Ccchhhhhhhh-cchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-CcchhHHHH
Q psy4740 2 HIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-PTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~ 79 (147)
++..|++.||+ +||+.+..+.++.+++...+... .+.... ...++.|++.+...+.....+.+..+ +++++...+
T Consensus 249 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~ 325 (355)
T TIGR00896 249 ALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA--PMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSA 325 (355)
T ss_pred HHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh--hhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHH
Confidence 46789999999 56667777777777766655554 222222 23467899988888877777765554 567788899
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhc
Q psy4740 80 FVFAGNQIGTVFSSFLSGFLLKYT 103 (147)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~l~~~~ 103 (147)
+.+....++..++|.+.+.+.++.
T Consensus 326 ~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 326 MAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 988888899999999999999874
No 200
>KOG4686|consensus
Probab=98.75 E-value=8.1e-08 Score=65.59 Aligned_cols=112 Identities=21% Similarity=0.122 Sum_probs=78.1
Q ss_pred CcchhhhhhhhcchHHHHHHHH-HHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGIL-STAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
+++.|.++||+|++.......+ ...++-....+ +.+.-++...+.|...+.........++...|+++-|++.+.
T Consensus 317 spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F----t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf 392 (459)
T KOG4686|consen 317 SPVFGAISDKYGFNLWWVASACILTLLGHSGLFF----TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGF 392 (459)
T ss_pred hhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh----hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHH
Confidence 5788999999999976655433 33333333222 233345566677776665555566677778888999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcC-CChhHHHHHHHHH
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKYTD-GDWPEIFYLFGIL 117 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 117 (147)
.++..++|-.+.|.+.+.+.+.++ ..|--.|.+....
T Consensus 393 ~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~ 430 (459)
T KOG4686|consen 393 IQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL 430 (459)
T ss_pred HHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence 999999999999999999998854 2344445443333
No 201
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.72 E-value=3.5e-08 Score=68.92 Aligned_cols=91 Identities=29% Similarity=0.465 Sum_probs=75.8
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
++.|++.||+++|+..........+......... .++....+...++.|++.+...+....++.|..|+++|++..++.
T Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 340 (352)
T PF07690_consen 261 LLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLF 340 (352)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5689999999998888777777666666655442 235567777888899999999999999999999999999999999
Q ss_pred HhhhhhHHHHHH
Q psy4740 82 FAGNQIGTVFSS 93 (147)
Q Consensus 82 ~~~~~~g~~~~~ 93 (147)
+...+++..++|
T Consensus 341 ~~~~~~~~~igP 352 (352)
T PF07690_consen 341 NSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC
Confidence 999999999887
No 202
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.71 E-value=3.2e-08 Score=69.72 Aligned_cols=85 Identities=13% Similarity=0.029 Sum_probs=66.9
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc--cc-------ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA--AR-------QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT 72 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 72 (147)
.+++|++.||+|||+.+..+.++.++........ .. ++.+.+....++.+++.+...+...+++.|.+|++
T Consensus 262 ~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~ 341 (356)
T TIGR00901 262 GLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPK 341 (356)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCC
Confidence 3567899999999999888887777666544332 11 23455667778889999999999999999999999
Q ss_pred chhHHHHHHHhhhh
Q psy4740 73 ERGKIGSFVFAGNQ 86 (147)
Q Consensus 73 ~r~~~~~~~~~~~~ 86 (147)
+||+.+++.++..+
T Consensus 342 ~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 342 FGATQMALLSSLSA 355 (356)
T ss_pred ccHHHHHHHHHHHh
Confidence 99999999877554
No 203
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.71 E-value=7.1e-07 Score=65.58 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=95.2
Q ss_pred cchhhhhhhhcchHHHHH-HHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch-------
Q psy4740 3 IPGGLLAQKFGGKHTLGF-GILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER------- 74 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r------- 74 (147)
|+.|-++|+-++||.++. ...+..+.+..+.+..+++++...+..++.-++.+......++++.|..+++.+
T Consensus 88 P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~ 167 (477)
T PF11700_consen 88 PFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREP 167 (477)
T ss_pred HHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhh
Confidence 678999999886666554 455555566666665445665556666666677777888889999999999888
Q ss_pred -------------------hHHHHHHHhhhhhHHHHHHHHHHHHHhhcC------CChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740 75 -------------------GKIGSFVFAGNQIGTVFSSFLSGFLLKYTD------GDWPEIFYLFGILGVLWFVAWCFLC 129 (147)
Q Consensus 75 -------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (147)
++..+.......+|+++.-.+.-.+....+ .+.|..+.+.++--++..+..++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~ 247 (477)
T PF11700_consen 168 SANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWL 247 (477)
T ss_pred hccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 888888888888888887766655443321 2357788888877777777777777
Q ss_pred cCCCC
Q psy4740 130 YNDPA 134 (147)
Q Consensus 130 ~~~~~ 134 (147)
|+.|+
T Consensus 248 ~~~~~ 252 (477)
T PF11700_consen 248 PDRPG 252 (477)
T ss_pred CCCCC
Confidence 77655
No 204
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.70 E-value=2.3e-07 Score=65.78 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=66.4
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc--c-ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA--R-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
+++.|++.||+|+|+.+..+..+..++...+.... . .+....+...++.|++.+...+.......|..| ++|+++.
T Consensus 259 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~ 337 (385)
T TIGR00710 259 GFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTAS 337 (385)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHH
Confidence 45788999999999998888777666665554331 1 223344556677888888888888888888876 6899999
Q ss_pred HHHHhhhhh-HHHHHHHHH
Q psy4740 79 SFVFAGNQI-GTVFSSFLS 96 (147)
Q Consensus 79 ~~~~~~~~~-g~~~~~~~~ 96 (147)
++.+..... |...++.++
T Consensus 338 ~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 338 ALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 998776654 445555444
No 205
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.70 E-value=7.9e-08 Score=77.11 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=86.2
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc------------------ccccHHHHHHHHHHHhhccccCcccHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA------------------ARQSANWLIALRFFEGLGEGTTFPALNT 63 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 63 (147)
++..|+++|+.++++.+..+.++.++..+..... ...+.+.+++..++.|++.+...+...+
T Consensus 278 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 357 (1140)
T PRK06814 278 SFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFA 357 (1140)
T ss_pred HHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4567888888777666655555554444333221 1134566677788889999988888999
Q ss_pred HhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740 64 LLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 64 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (147)
++.+.+|++.||+++|..+....++..+++.+.+.+.+.. .++...+++.+...++
T Consensus 358 ~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 358 ALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG-FSIPWIILFIALANLI 413 (1140)
T ss_pred HHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887542 3666666655554333
No 206
>PRK10133 L-fucose transporter; Provisional
Probab=98.69 E-value=2.1e-07 Score=67.72 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=83.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.+++.||+|+|+++..+..+.++...+.... .+. ..+..-.+.|++.+..+|...+...|..|+ +.+.+.++.
T Consensus 312 ~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~ 387 (438)
T PRK10133 312 RFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFI 387 (438)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHH
Confidence 4578999999999999888877766665555444 332 234556778999999999999999998765 356666666
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYLFGILGVLWFV 123 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 123 (147)
.. ..+|..++|.+.+.+.+. .| -+..|++..+..+....
T Consensus 388 ~~-~~~g~~~~~~i~G~l~~~--~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 388 VM-TIIGGGIVTPVMGFVSDA--AGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred hH-HhccchHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHH
Confidence 54 446788888888988877 55 67888766555544333
No 207
>KOG0252|consensus
Probab=98.68 E-value=2.4e-08 Score=71.73 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=93.2
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHHHHHhh-ccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR--QSANWLIALRFFEGL-GEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
++...+.|+.|||+..+.+.++..+..+..+.... .+-..+.+...+..+ +.-+-......+-+|.+|.+.|+++.+
T Consensus 366 w~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hG 445 (538)
T KOG0252|consen 366 WFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHG 445 (538)
T ss_pred eEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhh
Confidence 35567899999999999999999988888766521 111112222222211 122222344556799999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhc---CCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740 80 FVFAGNQIGTVFSSFLSGFLLKYT---DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH 136 (147)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (147)
+.....-.|++++......+.++. ..+.+..+++.+.+..+..+..+ +.||++.+.
T Consensus 446 IsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~ 504 (538)
T KOG0252|consen 446 ISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGKS 504 (538)
T ss_pred HHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-EeecccccC
Confidence 999999999999999888888721 26789999999998887655554 455665443
No 208
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.65 E-value=1.6e-07 Score=69.24 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=88.9
Q ss_pred cchhhhhhhhcchHH-------HHHHHHHHHHHHHHhh-----hcc---cccHHHHHHHHHHHhhccccCcccHHHHhhh
Q psy4740 3 IPGGLLAQKFGGKHT-------LGFGILSTAIFTLLTP-----FAA---RQSANWLIALRFFEGLGEGTTFPALNTLLAQ 67 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~-------~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 67 (147)
++.+++.||.++|+. +.+|.++.+++.+... ... ..+.++++...++.|++++...+.....+.+
T Consensus 327 pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~ 406 (489)
T PRK10207 327 PILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAA 406 (489)
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 567899999998863 5666666665543221 111 1356777778899999999999999999999
Q ss_pred hcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHHHHh
Q psy4740 68 WVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT--------DGDWPEIFYLFGILGVLWFVAWCF 127 (147)
Q Consensus 68 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 127 (147)
..|++.++.+++++....++|..++..++....... ...+.+.|...+...++..+..+.
T Consensus 407 ~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 407 LVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888776553210 012456666666555544444443
No 209
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.64 E-value=3.8e-07 Score=66.30 Aligned_cols=128 Identities=27% Similarity=0.349 Sum_probs=95.1
Q ss_pred Ccchhhhhhhhc-----chHHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHHHHHhhccccCcccHHHHhhhhc--CCc
Q psy4740 2 HIPGGLLAQKFG-----GKHTLGFGILSTAIFTLLTPFAAR--QSANWLIALRFFEGLGEGTTFPALNTLLAQWV--PPT 72 (147)
Q Consensus 2 ~~~~g~l~d~~g-----r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--~~~ 72 (147)
.++.|.++|-+. ||+-++++.++..+....++.... .+.....+..++..++........-+.+.|.. .++
T Consensus 41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~ 120 (433)
T PF03092_consen 41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE 120 (433)
T ss_pred hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence 367899999873 555566677776555555544421 34555566667777888888888888888876 233
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 73 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 73 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
.|+...+.......+|.+++..++|.+.+. .+++..|.+.+.+..+..+...+..+|
T Consensus 121 ~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~--~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 121 SRGDLQSFVWGVRSVGSLVGSLLSGPLLDS--FGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhc--CCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 488999999999999999999999999888 688888988887777766666666665
No 210
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.63 E-value=8.4e-07 Score=63.12 Aligned_cols=101 Identities=22% Similarity=0.178 Sum_probs=76.0
Q ss_pred Ccchhhhhhhhc-----chHHHH-HHHHHHHHHHHHhhhc----cc-------ccHH---HHHHHHHHHhhccccCcccH
Q psy4740 2 HIPGGLLAQKFG-----GKHTLG-FGILSTAIFTLLTPFA----AR-------QSAN---WLIALRFFEGLGEGTTFPAL 61 (147)
Q Consensus 2 ~~~~g~l~d~~g-----r~~~~~-~~~~~~~~~~~~~~~~----~~-------~~~~---~~~~~~~l~g~~~~~~~~~~ 61 (147)
++.+|+.||+.+ ||.-++ .+..+.+.+..++... .. +.+. ...+.-.+.|++.+......
T Consensus 31 R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~ 110 (403)
T PF03209_consen 31 RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSF 110 (403)
T ss_pred HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHH
Confidence 357899999998 776555 4566666655554432 11 1221 22344567788888888889
Q ss_pred HHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 62 NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 62 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
.+++.|..|+|+|++..++.....-+|.+++..+.+.+.+.
T Consensus 111 lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~ 151 (403)
T PF03209_consen 111 LALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP 151 (403)
T ss_pred HHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999887766
No 211
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.63 E-value=1.3e-06 Score=63.49 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=100.4
Q ss_pred Ccchhhhhhh----hcch-HHHHHHHHHHHHHHHHhhhccc----ccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-C
Q psy4740 2 HIPGGLLAQK----FGGK-HTLGFGILSTAIFTLLTPFAAR----QSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-P 71 (147)
Q Consensus 2 ~~~~g~l~d~----~gr~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~ 71 (147)
-|+.|.+.|| +||+ +.++++.+-.++.+.++...++ .+....++...+.+++......+..++.+|+.+ +
T Consensus 65 DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~ 144 (467)
T COG2211 65 DPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDP 144 (467)
T ss_pred cchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCH
Confidence 3678888885 6754 5667788888888888776642 345566677788899999998888999999864 5
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc-----CCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 72 TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT-----DGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 72 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
++|.+..+.-....++|..+...+...+.... ..+|+...++.+++.++..+.+++..+|+..
T Consensus 145 ~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~ 212 (467)
T COG2211 145 QERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 89999999988888888777777666655432 2478888888888888777777777776543
No 212
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.61 E-value=9.9e-07 Score=64.73 Aligned_cols=131 Identities=14% Similarity=0.019 Sum_probs=101.3
Q ss_pred chhhhhhhhcc-hHHHHHHHHHHHHHHHHhhhccc--cc-----------------HHHHHHHHHHHhhccccCcccHHH
Q psy4740 4 PGGLLAQKFGG-KHTLGFGILSTAIFTLLTPFAAR--QS-----------------ANWLIALRFFEGLGEGTTFPALNT 63 (147)
Q Consensus 4 ~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~~~~~--~~-----------------~~~~~~~~~l~g~~~~~~~~~~~~ 63 (147)
..-++.+|+|+ |++...+.++.+++.....+.+. +| .+..++...+.|+..+.....-++
T Consensus 324 ~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfa 403 (477)
T TIGR01301 324 GMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFA 403 (477)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHH
Confidence 34567889984 67767787777777666654411 00 256667778899999999999999
Q ss_pred HhhhhcCC--cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 64 LLAQWVPP--TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 64 ~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
++++..++ ++.|..+|+.+.+..+..++..+..+.+.+..+.+-..++.+.++..++..+..++..|+.+.
T Consensus 404 l~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 404 LASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999885 556999999999999999999988888666655567788889999998888888888877543
No 213
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.61 E-value=3.3e-07 Score=66.16 Aligned_cols=114 Identities=15% Similarity=0.079 Sum_probs=83.8
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
.+..+++.||+++|+++.+.....++.+++.... ++.. ....-++.|.+.+..+|...+...+..+++.+.....+.
T Consensus 286 R~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~--~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~ 362 (410)
T TIGR00885 286 RFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA--GGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLV 362 (410)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--CChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 4568899999999999888888877777777665 4433 356667788888889999999999999877654444443
Q ss_pred HhhhhhHHHHHHHHHHHHHhhc---CC-ChhHHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYT---DG-DWPEIFYLFGILGVL 120 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~---~~-~~~~~~~~~~~~~~~ 120 (147)
.. .+|+.+.|.+.|.+.|.. .. +.+..|++.....+.
T Consensus 363 ~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 363 MA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV 403 (410)
T ss_pred HH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence 33 389999999999999852 11 467777775554443
No 214
>KOG0254|consensus
Probab=98.59 E-value=7.6e-07 Score=66.02 Aligned_cols=132 Identities=18% Similarity=0.128 Sum_probs=82.7
Q ss_pred chhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc--c-------c--HHHHHHHHHHHhhccccCcccHHHHhhhhcCCc
Q psy4740 4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR--Q-------S--ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT 72 (147)
Q Consensus 4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~--~-------~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 72 (147)
+...+.||+|||+.++.+.....++..+++.... . . ...+....+..........+....+.+|.+|.+
T Consensus 348 ~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~ 427 (513)
T KOG0254|consen 348 VATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLR 427 (513)
T ss_pred HHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHh
Confidence 4568999999999999999999888887764410 0 1 111122222222333334455567889999999
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH-HHHhhccCCCCCCC
Q psy4740 73 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFV-AWCFLCYNDPASHP 137 (147)
Q Consensus 73 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 137 (147)
.|+.+.++..........+-......+.+. .++...|........+... ...+..||++....
T Consensus 428 ~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~--~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl 491 (513)
T KOG0254|consen 428 LRSKGASLAVAVNWLWNFLISFFFPFITEA--LGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTL 491 (513)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence 999999997776665555443333333333 2234556655555555555 67777888766543
No 215
>KOG0255|consensus
Probab=98.55 E-value=2.2e-06 Score=63.61 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=91.0
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccH-HHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhh
Q psy4740 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSA-NWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAG 84 (147)
Q Consensus 6 g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 84 (147)
+...|++|||.....+..+..++++..+....... ....+...+...+.+..+.....+.+|.+|+..|..+.+.....
T Consensus 371 ~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~ 450 (521)
T KOG0255|consen 371 GLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAA 450 (521)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 56789999999999999999999988877743332 13444444444555556666788999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q psy4740 85 NQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHP 137 (147)
Q Consensus 85 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (147)
..++.+++|.+........ ...... +.+....+.......+.||+...+.
T Consensus 451 ~~~~~i~ap~~~~~~~~~~-~~~~~~--~~~~~~~l~~~~~~~~lpet~~~~l 500 (521)
T KOG0255|consen 451 ARLGSILAPLFPLLLRQMF-PLLGLI--LFGWLALLLGLLSLLLLPETKGKPL 500 (521)
T ss_pred HHHHHHHHHHHHHHHhhhc-ccchHH--HHHHHHHHHHHHHHhcCcccCCCCC
Confidence 9999999998886554431 122222 2344444445555567787665544
No 216
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.54 E-value=9.4e-07 Score=64.25 Aligned_cols=100 Identities=25% Similarity=0.314 Sum_probs=83.4
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-------Ccchh
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-------PTERG 75 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~r~ 75 (147)
+++.++.+|+|+|+++.++.++.+++..+..+...++..+.++..++.+++.+...+...+.++|..+ .+.-|
T Consensus 290 ~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG 369 (467)
T COG2211 290 ILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG 369 (467)
T ss_pred HhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh
Confidence 56788999999999999999999999999988855677888888899999999999999998887763 34455
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 76 KIGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
...+......-+|..++..+.++....
T Consensus 370 i~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 370 IVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777778888888888888887765
No 217
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.54 E-value=1.8e-06 Score=61.19 Aligned_cols=95 Identities=15% Similarity=0.056 Sum_probs=56.9
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc--ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA--ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
+++.|++.||+|||+.+..+..+..+........ ...+.+...+...+.+.+.+.........+.|..| +++++..+
T Consensus 247 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~ 325 (377)
T PRK11102 247 TIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASS 325 (377)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHH
Confidence 3568999999999999888776544433222111 11234444444444444444445555566777665 78999998
Q ss_pred HHHhh-hhhHHHHHHHHHH
Q psy4740 80 FVFAG-NQIGTVFSSFLSG 97 (147)
Q Consensus 80 ~~~~~-~~~g~~~~~~~~~ 97 (147)
..+.. ..+|..+++.++.
T Consensus 326 ~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 326 LAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 86653 4466666665544
No 218
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=98.52 E-value=8.8e-07 Score=63.11 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-cc------cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc---chhHHHHHHHhhh
Q psy4740 16 HTLGFGILSTAIFTLLTPFAA-RQ------SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT---ERGKIGSFVFAGN 85 (147)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~ 85 (147)
|+++++.++..++..+...+. .. +...++++..+.++|.|+.-++..++..|.++++ +|.+.+++++...
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888888888888854431 11 2357888888999999999999999999998765 5677888899999
Q ss_pred hhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 86 QIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 86 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
++|..+++...+.+.++ .+|...|.+..+..++..+..+.-
T Consensus 82 n~G~~~~~~~~~~i~~~--~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQN--YGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHC--S-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccc--cchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999999999887 799999999988887755554433
No 219
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.49 E-value=5.3e-07 Score=64.70 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=67.4
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHH--HHHHHHh-hhc--ccccHH-HHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILST--AIFTLLT-PFA--ARQSAN-WLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 74 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~--~~~~~~~-~~~--~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 74 (147)
.||+.|.++||.|.||-+++..... ..+.+.. .+. .+.|.+ ..+++-+..++......|..-+++.+.. ++.
T Consensus 59 ~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~ 136 (412)
T PF01306_consen 59 AQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRN 136 (412)
T ss_dssp THHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHH
T ss_pred HHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHh
Confidence 3678899999999666554432222 2222221 111 012321 1222222333333333344444444332 334
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
+.-.|-.-...++|..++..++|.+.+. +-...||+.....++..++.....|+.
T Consensus 137 ~feYG~~R~wGSig~ai~s~~~G~L~~i---~p~~~fwi~s~~~~il~lll~~~~~~~ 191 (412)
T PF01306_consen 137 GFEYGRARMWGSIGFAIASLLAGILFNI---NPNIIFWIASAAAIILLLLLLLLKPDV 191 (412)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSS---S
T ss_pred cCCcchHHHHhhHHHHHHHHHhheeeee---CccHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 4455567778889999999999999876 556778877766666555555555443
No 220
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.48 E-value=1.6e-06 Score=54.36 Aligned_cols=96 Identities=19% Similarity=0.240 Sum_probs=79.9
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 82 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 82 (147)
++.+.+.+++|+|+.+.++.+...+...... - ++.+.++..-++.|++.+..+.....++.+..++++|++..++.-
T Consensus 55 l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~--~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw 131 (156)
T PF05978_consen 55 LFAPSIVNKLGPKWSMILGSLGYAIYIASFF-Y--PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFW 131 (156)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-h--hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHH
Confidence 4567788999999999999999887665543 3 567788899999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHh
Q psy4740 83 AGNQIGTVFSSFLSGFLLK 101 (147)
Q Consensus 83 ~~~~~g~~~~~~~~~~l~~ 101 (147)
...+.+.++|..+.-.+.+
T Consensus 132 ~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 132 AIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888787777766655543
No 221
>PRK11462 putative transporter; Provisional
Probab=98.43 E-value=1.7e-06 Score=63.37 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=64.1
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC-------Ccchh
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-------PTERG 75 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~r~ 75 (147)
+++++++||+|+|+.+..+.....+...+..+....+...+++..++.|++.+...+...+.++|..+ .+.-|
T Consensus 281 ~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g 360 (460)
T PRK11462 281 ALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG 360 (460)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchH
Confidence 46899999999998877655544443333333221233334444566677666666666667777665 22334
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 76 KIGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
...+.......+|..+++.+.+.+.+.
T Consensus 361 ~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 361 ISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666678889999999999887765
No 222
>PRK09848 glucuronide transporter; Provisional
Probab=98.38 E-value=5.3e-06 Score=60.45 Aligned_cols=96 Identities=13% Similarity=0.157 Sum_probs=55.7
Q ss_pred Ccchhhhhhhh----cchHHH-HHHHHHHHHHHHHhhhcc---cc--cHHHHHHHHHHHhhccccCcccHHHHhhhhcCC
Q psy4740 2 HIPGGLLAQKF----GGKHTL-GFGILSTAIFTLLTPFAA---RQ--SANWLIALRFFEGLGEGTTFPALNTLLAQWVPP 71 (147)
Q Consensus 2 ~~~~g~l~d~~----gr~~~~-~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 71 (147)
.++.|+++||. |||+.. .++.+...+...+....+ .. ..........+.+++.+...+...+...|..++
T Consensus 61 ~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 140 (448)
T PRK09848 61 DVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQ 140 (448)
T ss_pred hhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCC
Confidence 57899999996 666644 555554444443332111 01 122334445667777887887778887777644
Q ss_pred -cchhHHHHHHHhhhh-----hHHHHHHHHHH
Q psy4740 72 -TERGKIGSFVFAGNQ-----IGTVFSSFLSG 97 (147)
Q Consensus 72 -~~r~~~~~~~~~~~~-----~g~~~~~~~~~ 97 (147)
++|.+..+......+ ++..++|.+..
T Consensus 141 ~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 141 PQSRARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678877665543323 44455555544
No 223
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.36 E-value=6e-06 Score=59.53 Aligned_cols=127 Identities=24% Similarity=0.326 Sum_probs=74.4
Q ss_pred Ccchhhhhhhhc-chHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 2 HIPGGLLAQKFG-GKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 2 ~~~~g~l~d~~g-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
++++|.++||.+ +|+.+.+..++.++........ ++++.+....++..+......|...++..+...+ ++.-.+-
T Consensus 54 ~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~--~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~ 129 (400)
T PF03825_consen 54 PPFWGAIADRFGSAKRILALLSLLSALALLLLAFS--SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGR 129 (400)
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCc
Confidence 578999999986 6677767666666655555555 6777777777777877777788888888777642 3333444
Q ss_pred HHhhhhhHHHHHHHH-HHHHHhhcC-CChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 81 VFAGNQIGTVFSSFL-SGFLLKYTD-GDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~-~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
.....++|-+++... ...+....+ .+....+++.+...++.... .+..|+.|
T Consensus 130 iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~ 183 (400)
T PF03825_consen 130 IRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTP 183 (400)
T ss_pred chhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCCCc
Confidence 444555555555433 222322211 12234555555544433322 33445544
No 224
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.35 E-value=2.2e-05 Score=56.44 Aligned_cols=123 Identities=24% Similarity=0.235 Sum_probs=99.7
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 82 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 82 (147)
++...+.|..+.|++++++.+...+...+..+. ++...+-+..+.-|++.+. .....+++-...|+++-.++.+...
T Consensus 59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~r 135 (412)
T PF01770_consen 59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTR 135 (412)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHH
Confidence 456788999999999999999999888888888 8999999999999998775 4556777777778888889999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 83 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 83 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
...-+|..++..++-.+....+.+++...++......+..+..+++
T Consensus 136 aa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 136 AATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999988888655677888777766665544444443
No 225
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.28 E-value=2.1e-05 Score=56.24 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 39 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 39 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
+.+......++.+.+.+...+....+..|.+| ++++...++.+....+|..+++.+.+.+.+.
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 298 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 45566777788889888888989998989886 5789999999999999999999998887554
No 226
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.26 E-value=1.8e-05 Score=55.73 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=90.9
Q ss_pred chhhhhhh-hcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCC-cchhHHHHHH
Q psy4740 4 PGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPP-TERGKIGSFV 81 (147)
Q Consensus 4 ~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~ 81 (147)
....+.+| .++|+.......+..++.+.+.+.+..++... .++.|++.|..++....++.+..++ ++-++..++.
T Consensus 262 l~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgma 338 (395)
T COG2807 262 LIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMA 338 (395)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 34566775 56888888888888888888877633333222 4899999999999999998887655 4445555667
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
+...-+=..++|.+.|.+-|.++ +|+.+........++..+..+..-|
T Consensus 339 Qg~GYllAa~GP~l~G~lhDa~g-sw~~~~~~l~~~~i~m~i~Gl~a~r 386 (395)
T COG2807 339 QGVGYLLAAFGPWLFGFLHDATG-SWSAPLVLLALATLLMLIFGLRAGR 386 (395)
T ss_pred hhhhHHHHhhhhhhHhHHHHhcC-ChHHHHHHHHHHHHHHHHHHhhcch
Confidence 77767777889999999998864 8998888877777766666555433
No 227
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.22 E-value=3.5e-06 Score=59.42 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=58.7
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccc--cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQ--SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
+++.|+++||+|+|+.+..+......+.......... +.....+...+.++..+...+.....+.|..| +++|+..|
T Consensus 278 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g 356 (366)
T TIGR00886 278 RPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSG 356 (366)
T ss_pred hhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHH
Confidence 4678999999999988877766666555544433212 44444444455555555556666777788876 69999999
Q ss_pred HHHhhhhhH
Q psy4740 80 FVFAGNQIG 88 (147)
Q Consensus 80 ~~~~~~~~g 88 (147)
+.+...++|
T Consensus 357 ~~~~~~~~g 365 (366)
T TIGR00886 357 LVGAIGNLG 365 (366)
T ss_pred HHHHhccCC
Confidence 988877665
No 228
>KOG3764|consensus
Probab=98.22 E-value=1.1e-05 Score=57.56 Aligned_cols=124 Identities=20% Similarity=0.164 Sum_probs=89.1
Q ss_pred CCcchhhhhhhhc--chHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcC---Cc---
Q psy4740 1 MHIPGGLLAQKFG--GKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP---PT--- 72 (147)
Q Consensus 1 ~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~--- 72 (147)
+..+.|.++||++ |-.....+.+...+.+....++ +++..+++-++..+++.+...........+..+ .+
T Consensus 322 g~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~--~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~ 399 (464)
T KOG3764|consen 322 GTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA--TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFN 399 (464)
T ss_pred cCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh--hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccc
Confidence 3567899999999 4333344555555555555666 788888888777777666655444444444333 23
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 73 ERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 73 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
.-|...++.....++|..+||.+++.+.+. .|++|...+.+....+...+...+
T Consensus 400 vYGsVyaIad~a~sla~a~GP~~gg~iv~~--iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 400 VYGSVYAIADAAFSLAYAIGPTFGGSLVEA--IGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred eeeeHHHHHHHHHHHhhhccccccchheee--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888889999999999999999999988 799998888888877766555544
No 229
>KOG2532|consensus
Probab=98.15 E-value=1.3e-05 Score=58.84 Aligned_cols=130 Identities=13% Similarity=0.200 Sum_probs=77.2
Q ss_pred cchhhhhhhhcch---------HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740 3 IPGGLLAQKFGGK---------HTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE 73 (147)
Q Consensus 3 ~~~g~l~d~~gr~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 73 (147)
+.+|.++||.-+| -.-.++....++.....++....+.+..+++..+.-...|...+....-..+. .+++
T Consensus 312 ~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~ 390 (466)
T KOG2532|consen 312 FVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQH 390 (466)
T ss_pred HHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchH
Confidence 4678999987552 22223444444444444554322221222222111111222222222223332 5678
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 74 RGKIGSFVFAGNQIGTVFSSFLSGFLLKY-TDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 74 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
-+..+++.+....+..+++|.+.+.+.+. +...|+..|++.+++.++..+...++-..++
T Consensus 391 a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~ 451 (466)
T KOG2532|consen 391 AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEP 451 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCcc
Confidence 89999999999999999999999998852 2258999999999998887666555544433
No 230
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.06 E-value=6.7e-05 Score=54.31 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=53.4
Q ss_pred ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q psy4740 38 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGIL 117 (147)
Q Consensus 38 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 117 (147)
+++...++..++.+++.+...+.......+ -.+..+|++.++.+.....+...++...+.+.++ +-...|....++
T Consensus 310 ~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~ 385 (413)
T PRK15403 310 HVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN---GGRLPFHLLAVV 385 (413)
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHH
Confidence 344445667778888888777766643322 2233579999998888888888888888888776 445556555555
Q ss_pred HHHH
Q psy4740 118 GVLW 121 (147)
Q Consensus 118 ~~~~ 121 (147)
..+.
T Consensus 386 ~~~~ 389 (413)
T PRK15403 386 AGVI 389 (413)
T ss_pred HHHH
Confidence 4443
No 231
>KOG4686|consensus
Probab=98.01 E-value=2.2e-06 Score=58.74 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=83.2
Q ss_pred Ccchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
+++.|++.|| +|-|..-.+-++...++-++++.. ..+.++.+..+|++.|+|.-......+.++..++..|+-...+|
T Consensus 96 cffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfG 175 (459)
T KOG4686|consen 96 CFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFG 175 (459)
T ss_pred eeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhh
Confidence 4678999996 788777666667777777766544 23679999999999999888888888999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 80 FVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
+..+...+|+.+--.+.+++++.
T Consensus 176 lqlSvAR~GstvNf~lm~~ly~~ 198 (459)
T KOG4686|consen 176 LQLSVARLGSTVNFLLMPFLYDT 198 (459)
T ss_pred HHHHHHHhhceeeeeecHHHHHH
Confidence 99999999988877777777765
No 232
>KOG3626|consensus
Probab=97.92 E-value=0.0001 Score=56.42 Aligned_cols=132 Identities=17% Similarity=0.226 Sum_probs=99.0
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-------------------c--------------------------
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-------------------R-------------------------- 37 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-------------------~-------------------------- 37 (147)
.+..+...|..|-+.+-++.++.+++++++++-+ .
T Consensus 150 ~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 229 (735)
T KOG3626|consen 150 IFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKRE 229 (735)
T ss_pred HhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCccccc
Confidence 3456667777777888888888888887765321 0
Q ss_pred --cc--H-HHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc---------
Q psy4740 38 --QS--A-NWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT--------- 103 (147)
Q Consensus 38 --~~--~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--------- 103 (147)
.+ + ..+.+++++.|+|....++...+|+-|...+++-...+|+.+....+|.++|.++++.+....
T Consensus 230 ~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~ 309 (735)
T KOG3626|consen 230 KESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG 309 (735)
T ss_pred ccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC
Confidence 00 2 255678899999999999999999999999999999999999999999999999999877532
Q ss_pred ----C----CChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 104 ----D----GDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 104 ----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
| ..|..-|++.+.+.++..+..+++.++.|+
T Consensus 310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 310 ITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 0 135555667777777766666665544443
No 233
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.84 E-value=0.00071 Score=48.60 Aligned_cols=120 Identities=23% Similarity=0.233 Sum_probs=92.3
Q ss_pred hhhhhh-hhcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHH
Q psy4740 5 GGLLAQ-KFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 82 (147)
Q Consensus 5 ~g~l~d-~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 82 (147)
.|++.. |.++++...+++...+++......+ ...+.+.+....++.|++.|.......+.+.+..++++.|..+|.+.
T Consensus 264 ~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WG 343 (403)
T PF03209_consen 264 AGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWG 343 (403)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHH
Confidence 344444 6788888888888777776655443 23567788888999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHH
Q psy4740 83 AGNQIGTVFSSFLSGFLLKYT--------DGDWPEIFYLFGILGVLWFVA 124 (147)
Q Consensus 83 ~~~~~g~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~ 124 (147)
..+.++..++..+++.+.|.. ..+|...|.+.++..++...+
T Consensus 344 aaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 344 AAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877632 134666677666665554333
No 234
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.00017 Score=51.65 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=81.0
Q ss_pred chhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHh
Q psy4740 4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA 83 (147)
Q Consensus 4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 83 (147)
...++..|+.+.|.+.+..+...+.++...+. ++ ..-+...++.|...+..+|+..+...+..| +.....|..-.
T Consensus 291 ig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~--~g-~v~~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~ 365 (422)
T COG0738 291 IGSALMSRIKPEKYLAFYALIAILLLLAVALI--GG-VVALYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLV 365 (422)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh--cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeee
Confidence 44566678988898888887777777777766 55 344556678899999999999999999988 33344455555
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740 84 GNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 84 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (147)
...+|+.+.|.+.|++.|. .+-...+.....++.+
T Consensus 366 maivGGAiiP~l~G~i~d~--~g~~~~~~~~pllc~l 400 (422)
T COG0738 366 MAIVGGAIIPPLQGVIADM--FGIQLTFLIVPLLCYL 400 (422)
T ss_pred eheecchHHHHHHHHHHHh--hhhHHHHHHHHHHHHH
Confidence 6678999999999999998 5666555544444433
No 235
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.74 E-value=0.001 Score=49.15 Aligned_cols=99 Identities=12% Similarity=0.018 Sum_probs=68.5
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhccc---cc--------------------------HHHHHHHHHHHhhc
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR---QS--------------------------ANWLIALRFFEGLG 53 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~---~~--------------------------~~~~~~~~~l~g~~ 53 (147)
++.+++++|++|++++-+....+.....++++..- +. .|...+..+...+.
T Consensus 62 ~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw 141 (472)
T TIGR00769 62 LIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELW 141 (472)
T ss_pred HHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 46789999999999987766666665555443310 00 11122222333333
Q ss_pred cccCcc-cHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy4740 54 EGTTFP-ALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK 101 (147)
Q Consensus 54 ~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 101 (147)
.....+ .-..+++|.++.++-.|..++...+.++|.++++.+...+.+
T Consensus 142 ~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 142 GSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444 567889999999999999999999999999999998888763
No 236
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.68 E-value=0.00093 Score=48.22 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=87.7
Q ss_pred CcchhhhhhhhcchHHHH-HHHHHHHHHHHHhhhccc-ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLG-FGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
.|..|.++|+.|+||-.+ +...+..+..+...+..+ .+++..++...+..++..+.....++++.+..++++-++.-+
T Consensus 75 apiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~ 154 (438)
T COG2270 75 APILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISG 154 (438)
T ss_pred HHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccc
Confidence 367899999999665544 555555566666666643 344455566677888888888889999999999988888777
Q ss_pred HHHhhhhhHHHHHHHHHHH-HHhh---------------cCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 80 FVFAGNQIGTVFSSFLSGF-LLKY---------------TDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~-l~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
.......+|+.+.-...-. +... ++..-|..+.+.++--++..+..+...++.++
T Consensus 155 lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~ 225 (438)
T COG2270 155 LGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEK 225 (438)
T ss_pred cccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhccccccc
Confidence 7666666666554333211 1111 12456777777777777767776666666543
No 237
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.60 E-value=0.00067 Score=51.34 Aligned_cols=96 Identities=20% Similarity=0.174 Sum_probs=68.6
Q ss_pred cchhhhhhhhcch-HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 3 IPGGLLAQKFGGK-HTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 3 ~~~g~l~d~~gr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
.+.|.+..+++|- +.++.+.++..+++-.++...++|....+...++.|++.|.........+.-..|++.-+.+.++.
T Consensus 367 ~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~ 446 (599)
T PF06609_consen 367 VILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLT 446 (599)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHH
Confidence 3456677766644 444566666665555555554466666677778888888877766666666678999999999999
Q ss_pred HhhhhhHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGF 98 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~ 98 (147)
.+...+|+.++..+...
T Consensus 447 ~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 447 GSIRSIGGSIGYAIYNA 463 (599)
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 99999988888877543
No 238
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.54 E-value=1.7e-05 Score=59.25 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=3.0
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-----------c----------------------------------
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-----------R---------------------------------- 37 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-----------~---------------------------------- 37 (147)
++..++.+|..|-+.+-.+.++.++++++++.-+ .
T Consensus 56 ~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 135 (539)
T PF03137_consen 56 LFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSS 135 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccc
Confidence 4566777787777888888888888887764211 0
Q ss_pred ---ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy4740 38 ---QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK 101 (147)
Q Consensus 38 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 101 (147)
..+..+++++++.|+|....++...+|+-|..++++-+.++|+.+....+|..+|..+++.+.+
T Consensus 136 ~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 136 SLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLR 202 (539)
T ss_dssp ----------------SSS------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence 0135677899999999999999999999999999999999999999999999999999887664
No 239
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.51 E-value=0.0023 Score=46.21 Aligned_cols=118 Identities=12% Similarity=0.023 Sum_probs=79.0
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhh
Q psy4740 5 GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAG 84 (147)
Q Consensus 5 ~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 84 (147)
+.++.+|..-+.=+....++..++.++.++. ++.+.-+++.++.+++.|........+.+ .+++ ...+-+.++
T Consensus 79 aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~--~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~----~~l~~wssG 151 (402)
T PF02487_consen 79 APFFIHRVPYWIRILICVALSAAGMLLVAFS--PSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK----SSLSAWSSG 151 (402)
T ss_pred hHhhhhhccchHHHHHHHHHHHHHHhheeec--cchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc----cccccccCC
Confidence 4455666653333444556667777777777 78888888889999988888777766644 4543 346667777
Q ss_pred hhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 85 NQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 85 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
.+.++.+|+..-..+.+ .+.+.|..+.....+.++..+..++..+
T Consensus 152 TG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 152 TGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred cChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77788888777665655 3456677777777666555555555544
No 240
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.42 E-value=0.0032 Score=46.87 Aligned_cols=104 Identities=11% Similarity=0.071 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhhhcc-------cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhh-hhhHH
Q psy4740 18 LGFGILSTAIFTLLTPFAA-------RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAG-NQIGT 89 (147)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~ 89 (147)
+.++.++.+++...+.... ..+.++++...++.++|+-+..|...+.+++..|++.|++.+|.+... ..+|.
T Consensus 348 fa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~ 427 (493)
T PRK15462 348 FALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIAN 427 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777765553321 136778888899999999999999999999999999999999998663 35666
Q ss_pred HHHHHHHHHHHhhc--C--------CChhHHHHHHHHHHHHH
Q psy4740 90 VFSSFLSGFLLKYT--D--------GDWPEIFYLFGILGVLW 121 (147)
Q Consensus 90 ~~~~~~~~~l~~~~--~--------~~~~~~~~~~~~~~~~~ 121 (147)
.++..+.+...... + ..+...|...+...++.
T Consensus 428 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 428 YLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 66666555442110 0 13455666666555443
No 241
>KOG2816|consensus
Probab=97.41 E-value=0.0045 Score=45.72 Aligned_cols=95 Identities=28% Similarity=0.414 Sum_probs=80.4
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhh
Q psy4740 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGN 85 (147)
Q Consensus 6 g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 85 (147)
..+...+|-|+.+..|+....+.....+++ ++.++++...++.++ .....+...++++.+.+++++|+.+++.....
T Consensus 299 ~~l~~~l~~~~~i~lGl~~~~~~~~~~af~--~~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~ 375 (463)
T KOG2816|consen 299 PLLSSILGEKRLISLGLLSEFLQLLLFAFA--TETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEEQGKVFGIISGIE 375 (463)
T ss_pred HHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--ccchhhhHHHHHHHh-hcchhHHHHhHHHhhcccccccchhhHHHHHH
Confidence 366778888888999999999999999988 777777777666555 45677888999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhc
Q psy4740 86 QIGTVFSSFLSGFLLKYT 103 (147)
Q Consensus 86 ~~g~~~~~~~~~~l~~~~ 103 (147)
.+...++|.+-+.+...+
T Consensus 376 ~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 376 GLSGVVSPALYGNIFALT 393 (463)
T ss_pred HHhhhhhHHHHHHHHHHH
Confidence 999999999988876654
No 242
>KOG2615|consensus
Probab=97.29 E-value=0.001 Score=47.56 Aligned_cols=85 Identities=16% Similarity=0.315 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHH
Q psy4740 17 TLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 96 (147)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 96 (147)
.+.....+..-..++.... +....++....+..+..+...+....++....|.++||...|+..+...++..+||+++
T Consensus 331 ~l~~~l~~~vP~~llls~~--~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~ 408 (451)
T KOG2615|consen 331 VLLFSLLLIVPAFLLLSLA--RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHhcc--ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhh
Confidence 3334444433333444444 55566777777777777777788888999999999999999999999999999999999
Q ss_pred HHHHhhc
Q psy4740 97 GFLLKYT 103 (147)
Q Consensus 97 ~~l~~~~ 103 (147)
|.+..+.
T Consensus 409 g~i~~Ws 415 (451)
T KOG2615|consen 409 GVIFSWS 415 (451)
T ss_pred heeEEEe
Confidence 8886653
No 243
>KOG3098|consensus
Probab=97.22 E-value=0.0011 Score=48.75 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=77.8
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.+.+.|+.|+|+.+.++...+......... .|-+.+++...+.|+|.+..+.....+++|..+++.+.+..++.
T Consensus 67 ~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~---~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~ 143 (461)
T KOG3098|consen 67 CLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF---PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIF 143 (461)
T ss_pred HHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh---cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHH
Confidence 356788999999999999999998888777655 46678899999999999999999999999999999999999987
Q ss_pred HhhhhhHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLS 96 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~ 96 (147)
-.....+.++|..+.
T Consensus 144 Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 144 WAIGQSSLIIGGIIL 158 (461)
T ss_pred HHHHHHHHHhhhHhh
Confidence 777777766665443
No 244
>PTZ00207 hypothetical protein; Provisional
Probab=97.20 E-value=0.0043 Score=47.16 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHH-HHHHHH
Q psy4740 20 FGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFS-SFLSGF 98 (147)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~~ 98 (147)
+..+ ..++.++++... ....+++.-++.|++.|..++.....++|+|. |+-|+..+......-+|..+- -.+.|.
T Consensus 435 ~~~~-~~~~~lll~~~~--p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~ 510 (591)
T PTZ00207 435 IPSV-CIITMLTLFLTL--PKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGE 510 (591)
T ss_pred HHHH-HHHHHHHHHHHC--CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence 3344 555555555542 22578899999999999999999999999999 999999998888888888665 556777
Q ss_pred HHhhcC-----------CChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 99 LLKYTD-----------GDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 99 l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
+++... .=++..|.+.+.+.+...+....+
T Consensus 511 ~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l 551 (591)
T PTZ00207 511 WYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV 551 (591)
T ss_pred HHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence 776531 015778888888877766654443
No 245
>KOG1237|consensus
Probab=97.08 E-value=0.0057 Score=46.35 Aligned_cols=123 Identities=17% Similarity=0.219 Sum_probs=89.4
Q ss_pred cchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhc---c---c-------c-------c---HHHHHHHHHHHhhccccCc
Q psy4740 3 IPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFA---A---R-------Q-------S---ANWLIALRFFEGLGEGTTF 58 (147)
Q Consensus 3 ~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~---~---~-------~-------~---~~~~~~~~~l~g~~~~~~~ 58 (147)
+..++++|. +||-+++.++.++..++..+.... . + . + ...++...-+..+|.|+.-
T Consensus 91 l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r 170 (571)
T KOG1237|consen 91 LLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR 170 (571)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC
Confidence 467899996 489999999888887775544322 0 0 0 1 2345556667778999999
Q ss_pred ccHHHHhhhhcC---C-cc--hhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHh
Q psy4740 59 PALNTLLAQWVP---P-TE--RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCF 127 (147)
Q Consensus 59 ~~~~~~~~~~~~---~-~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (147)
+....+-+|.++ + +. +...++.++...+.|..++..+..+..+. .+|...|.+..+...+.++..+.
T Consensus 171 ~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~--~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 171 PCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN--VGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred CcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc--ccceeeccHHHHHHHHHHHHHHc
Confidence 999999999988 2 22 23677788888999999988888877766 78999888888877765554443
No 246
>KOG0637|consensus
Probab=96.98 E-value=0.0007 Score=49.33 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=66.1
Q ss_pred Ccchhhhhhh----hcchHHHH-HHHHHHHHHHHHhhhccc------c---------cHHHHHHHHHHHhhccccCcccH
Q psy4740 2 HIPGGLLAQK----FGGKHTLG-FGILSTAIFTLLTPFAAR------Q---------SANWLIALRFFEGLGEGTTFPAL 61 (147)
Q Consensus 2 ~~~~g~l~d~----~gr~~~~~-~~~~~~~~~~~~~~~~~~------~---------~~~~~~~~~~l~g~~~~~~~~~~ 61 (147)
||..|..+|| |||||-++ .+....+++.++.++++. + .....++..-+.=++.-......
T Consensus 84 QP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ 163 (498)
T KOG0637|consen 84 QPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC 163 (498)
T ss_pred cccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH
Confidence 6788888885 78776655 456666666666655420 1 12233333333344454566778
Q ss_pred HHHhhhhcCCcchhH-HHHHHHhhhhhHHHHHHHHHHHH
Q psy4740 62 NTLLAQWVPPTERGK-IGSFVFAGNQIGTVFSSFLSGFL 99 (147)
Q Consensus 62 ~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~l 99 (147)
-+++.|....++|-+ +.+.+.....+|+.+|...++..
T Consensus 164 ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 164 RALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 899999987776666 89999999999999998888743
No 247
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.97 E-value=0.0024 Score=46.79 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=56.9
Q ss_pred HHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC------CChhHHHHHHHHHHHHH
Q psy4740 48 FFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD------GDWPEIFYLFGILGVLW 121 (147)
Q Consensus 48 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~ 121 (147)
++..+.....+-.....++|..|+..-|+.+++..+..|+|..++..++..+.+..+ .+-.+..++.....++
T Consensus 326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll- 404 (433)
T PF03092_consen 326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLL- 404 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHH-
Confidence 444444444556677889999999999999999999999999999999998887642 1123344444555533
Q ss_pred HHHHHhhccC
Q psy4740 122 FVAWCFLCYN 131 (147)
Q Consensus 122 ~~~~~~~~~~ 131 (147)
.+....+.|+
T Consensus 405 ~l~ll~lLp~ 414 (433)
T PF03092_consen 405 PLPLLFLLPP 414 (433)
T ss_pred HHHHHHHcCC
Confidence 3333434454
No 248
>KOG4332|consensus
Probab=96.85 E-value=0.0015 Score=45.00 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=67.6
Q ss_pred chhhhhhhhcchHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHhhccccCcccHHHH-hhhhcCCc-----chhH
Q psy4740 4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-ARQSANWLIALRFFEGLGEGTTFPALNTL-LAQWVPPT-----ERGK 76 (147)
Q Consensus 4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~-~~~~~~~~-----~r~~ 76 (147)
+.|-++|+.|||+.-.. +++...++... +.+.+..++++|++-|+..+..++.-.++ +.|.-.++ .-..
T Consensus 91 ivgSLaDkqGRKracvt----ycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~ 166 (454)
T KOG4332|consen 91 IVGSLADKQGRKRACVT----YCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSV 166 (454)
T ss_pred HHHHHHhhhccccceee----ehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhH
Confidence 46789999999996443 44444444333 33678889999999999988888777664 56654221 1111
Q ss_pred HHHH-HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740 77 IGSF-VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 77 ~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (147)
.++- ......+-.+++.+.+..+.+..+.|--.+|-..+.+..+
T Consensus 167 TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLai 211 (454)
T KOG4332|consen 167 TFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAI 211 (454)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 2221 1233444455555666677776555555566555444443
No 249
>KOG2533|consensus
Probab=96.45 E-value=0.0054 Score=45.70 Aligned_cols=106 Identities=15% Similarity=0.076 Sum_probs=50.2
Q ss_pred cchhhhhhh----hcchHHHHHHHHHHHHHH-HHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchh-H
Q psy4740 3 IPGGLLAQK----FGGKHTLGFGILSTAIFT-LLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG-K 76 (147)
Q Consensus 3 ~~~g~l~d~----~gr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~-~ 76 (147)
+..|.++|| ..+|........+..... ...... .+.......-+....+.....+......++....+.|. .
T Consensus 327 i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~ 404 (495)
T KOG2533|consen 327 ILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA--AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALT 404 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHH
Confidence 568999999 667766666555554444 333222 22222222222222233334445555566665554443 3
Q ss_pred HHHHHHhhhhhHHHHHHHHHH-HHHhhcCCChhHHHH
Q psy4740 77 IGSFVFAGNQIGTVFSSFLSG-FLLKYTDGDWPEIFY 112 (147)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~~~~~~~ 112 (147)
..+......+.++.++|.+-. ..... ..|...|+
T Consensus 405 ~~~~~i~~~~s~~~~~~~~~~~~~ap~--y~~~~~f~ 439 (495)
T KOG2533|consen 405 TVSAIIDGTGSAGAISGQLFRSLDAPR--YGWGAVFY 439 (495)
T ss_pred HHhhhhcchhHHHHhhhhhcccccCcc--hhhhhHHH
Confidence 333444444444444443332 22222 35666663
No 250
>KOG3098|consensus
Probab=96.02 E-value=0.087 Score=39.03 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=63.3
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHhhhccc----------------ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCc
Q psy4740 9 AQKFGGKHTLGFGILSTAIFTLLTPFAAR----------------QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPT 72 (147)
Q Consensus 9 ~d~~gr~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 72 (147)
.+++||++.+..+..+..+.+++.-...+ +++....+.-++.|++.++.......++.+.. ++
T Consensus 306 ir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~ 384 (461)
T KOG3098|consen 306 IRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PD 384 (461)
T ss_pred hhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cC
Confidence 45689999999998888888877644311 23556777888999999988888888999888 67
Q ss_pred chhHHHHHHHhhhhhHHHHHH
Q psy4740 73 ERGKIGSFVFAGNQIGTVFSS 93 (147)
Q Consensus 73 ~r~~~~~~~~~~~~~g~~~~~ 93 (147)
+|..+.++.-.-..++..++-
T Consensus 385 ~~~~~fsi~kfyq~~~s~v~~ 405 (461)
T KOG3098|consen 385 DRAQAFSLFKFYQSVASCVAF 405 (461)
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 888888887666666655443
No 251
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.96 E-value=0.063 Score=39.49 Aligned_cols=53 Identities=6% Similarity=0.093 Sum_probs=37.3
Q ss_pred CCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q psy4740 70 PPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVA 124 (147)
Q Consensus 70 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (147)
+++...+..+...-.-.+..+++|++.|.+.+. .+.+....+.+...++....
T Consensus 143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~--~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTF--ASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCHHHHHHHHHHHHHHHHHH
Confidence 344555566666667778899999999999987 57777766666665554443
No 252
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.88 E-value=0.076 Score=38.63 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=53.7
Q ss_pred ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHH
Q psy4740 38 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFL 99 (147)
Q Consensus 38 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 99 (147)
++.+...+..+..|+..|..+......+.|-.|+++|-..++.....-+.|..++..++-.+
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56777777888999999999999999999999999999999999998888888877766555
No 253
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=95.85 E-value=0.078 Score=39.43 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=69.0
Q ss_pred ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHH------HHhhcCCChhHHH
Q psy4740 38 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF------LLKYTDGDWPEIF 111 (147)
Q Consensus 38 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------l~~~~~~~~~~~~ 111 (147)
.+.++++...+++++++=+..|...+.+....|+.-.+..++++......|..++..+.+. ..+. ......|
T Consensus 392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~--~~~~~~F 469 (498)
T COG3104 392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTA--FIEGRVF 469 (498)
T ss_pred cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhh--hhhhhhH
Confidence 3577888889999999999999999999999999999999999888888888777766663 1122 2445567
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q psy4740 112 YLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~ 130 (147)
+..+....+.........|
T Consensus 470 ~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 470 GTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 7777776665555444433
No 254
>KOG2325|consensus
Probab=94.96 E-value=0.023 Score=42.23 Aligned_cols=86 Identities=14% Similarity=0.198 Sum_probs=64.7
Q ss_pred HHHHHH-HHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740 42 WLIALR-FFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 42 ~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (147)
.+++.. ++.|.+.-.......++-+|...+++++...+.+......+..++|.+....... .|.|+.+.+.....++
T Consensus 389 ~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~--~g~~~v~~~~~~~~l~ 466 (488)
T KOG2325|consen 389 LYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL--SGPRPVWIILLCLLLV 466 (488)
T ss_pred hheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh--cCccHHHHHHHHHHHH
Confidence 334443 4566666666667888999999999999999999999999999999999999888 6777776666666555
Q ss_pred HHHHHHhhc
Q psy4740 121 WFVAWCFLC 129 (147)
Q Consensus 121 ~~~~~~~~~ 129 (147)
....+..+.
T Consensus 467 ~~~l~~~~~ 475 (488)
T KOG2325|consen 467 VAALWIVFL 475 (488)
T ss_pred HHHHHHHHH
Confidence 444444333
No 255
>KOG2563|consensus
Probab=94.73 E-value=0.035 Score=40.77 Aligned_cols=101 Identities=19% Similarity=0.075 Sum_probs=63.0
Q ss_pred Ccchhhhhhhhc-chHHHHHHHHHHHHHHHHhhhc--ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKFG-GKHTLGFGILSTAIFTLLTPFA--ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~g-r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
+...|.+.||.. -|.++........++....... .....+.+...-.+.|.+....+|...-+-.|..-|..-+...
T Consensus 318 a~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSs 397 (480)
T KOG2563|consen 318 ALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSS 397 (480)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccc
Confidence 356789999986 4444444444444442222111 1122344556667788888888998888888875555555777
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
|+.+...++-+++-..+.+...+.
T Consensus 398 Gll~~~gq~f~~~~~~~~~~~~~~ 421 (480)
T KOG2563|consen 398 GLLNLSGQIFGVILVFIMGILAED 421 (480)
T ss_pred eeEEeehhHHHHHHHHHHHHHhhc
Confidence 777777776666666666666554
No 256
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=94.70 E-value=1 Score=33.94 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=36.7
Q ss_pred HHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy4740 61 LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK 101 (147)
Q Consensus 61 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 101 (147)
-..+++|.++.++-.+..++...+.++|.+++..+...+.+
T Consensus 165 FW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 165 FWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999888887777
No 257
>PF12832 MFS_1_like: MFS_1 like family
Probab=94.51 E-value=0.024 Score=31.20 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=18.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILS 24 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~ 24 (147)
++++|.++||+++++.++....+
T Consensus 52 ~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 52 PPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHCccHHHHHHHHH
Confidence 57899999999998887765544
No 258
>PRK03612 spermidine synthase; Provisional
Probab=93.76 E-value=2 Score=32.71 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=36.8
Q ss_pred HHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy4740 46 LRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK 101 (147)
Q Consensus 46 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 101 (147)
..++.++..|...|....+..+.. .++-++..|-.+....+|+++|.++.+.+.-
T Consensus 116 ~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 116 LVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 334566677777776666555432 2234567788888888999999988876554
No 259
>KOG3810|consensus
Probab=93.19 E-value=0.086 Score=37.77 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=75.9
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhh
Q psy4740 8 LAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQI 87 (147)
Q Consensus 8 l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 87 (147)
+.|-..-|+++++-.+.......+..+. ++.+.+=+.-+..|...+. ..+..+++-+..+++++.+..+......-.
T Consensus 65 LTD~lrYKPvivlq~ls~v~~w~~lv~g--~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~ 141 (433)
T KOG3810|consen 65 LTDYLRYKPVVVLQALSGVPVWIMLVFG--PSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLV 141 (433)
T ss_pred HhhhhhcceeeeeeccchhHHHHHHHhc--CCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHH
Confidence 4566666666666555555555555555 5555555555666665443 334567777778899999999998888888
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 88 GTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 88 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
|...+..++..+......++...-++......+......++
T Consensus 142 g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fL 182 (433)
T KOG3810|consen 142 GKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFL 182 (433)
T ss_pred HhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhC
Confidence 88888888888777644556655555555555544444433
No 260
>KOG3880|consensus
Probab=93.03 E-value=0.56 Score=33.33 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=68.1
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhh
Q psy4740 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGN 85 (147)
Q Consensus 6 g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 85 (147)
...-||+.-..=+.+..++.+.+.++.++. ++.++-+.+..+..++.|.....-..+.+..- ....+-+.++.
T Consensus 83 Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs--~s~~~sL~GV~~aSissGlGEiTFL~lss~Y~-----~~~i~~WSSGT 155 (409)
T KOG3880|consen 83 PFFIHRFPFGFRIALVVLLSALSFFLVAFS--NSVPMSLLGVVFASISSGLGEITFLALSSRYP-----SIVIAGWSSGT 155 (409)
T ss_pred hhhhhhcccchHHHHHHHHHhcceEEEEec--cchhHHHhhhhhhhhcCCcceeehhhhhccCC-----CceeccccCCC
Confidence 344555432222333455556666666666 77777888888888887777665555444322 12233344444
Q ss_pred hhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 86 QIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 86 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
+-++.+|..--..+.+..+.+-|-...+...+.++.....++..++
T Consensus 156 GgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~ 201 (409)
T KOG3880|consen 156 GGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS 201 (409)
T ss_pred CcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence 4455666555555555444567777777776666655555555543
No 261
>KOG3574|consensus
Probab=92.74 E-value=0.65 Score=34.02 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=44.6
Q ss_pred cchhhhhh-----hhcchHHHHH------HHHHHHHHHHHhhhcc----cccHHHHHHHHHHHhhccccCcccHHHHhhh
Q psy4740 3 IPGGLLAQ-----KFGGKHTLGF------GILSTAIFTLLTPFAA----RQSANWLIALRFFEGLGEGTTFPALNTLLAQ 67 (147)
Q Consensus 3 ~~~g~l~d-----~~gr~~~~~~------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 67 (147)
+.|..+.| |+||||.-++ +.++..++...--... .++.......-++.-+..+.=-.+.-.+.-.
T Consensus 81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALt 160 (510)
T KOG3574|consen 81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALT 160 (510)
T ss_pred HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 35677788 9999986432 2222222221110000 0122222222233334344344455566666
Q ss_pred hcCCcchhHHHHHHHhhhhhHHHHHHH
Q psy4740 68 WVPPTERGKIGSFVFAGNQIGTVFSSF 94 (147)
Q Consensus 68 ~~~~~~r~~~~~~~~~~~~~g~~~~~~ 94 (147)
+..+++-|.+......+.+.|..++..
T Consensus 161 mLs~e~lgyaST~q~Vg~~~GyfL~~~ 187 (510)
T KOG3574|consen 161 MLSRENLGYASTCQSVGQTAGYFLGNV 187 (510)
T ss_pred hcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence 777777776666555555555555433
No 262
>KOG1330|consensus
Probab=91.69 E-value=0.36 Score=35.89 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=38.2
Q ss_pred HHHHHhh-ccccCcccHHHHhhhhcCCcchhHHHHHHHhhh-hhHHHHHHHHHHHHHhh
Q psy4740 46 LRFFEGL-GEGTTFPALNTLLAQWVPPTERGKIGSFVFAGN-QIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 46 ~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l~~~ 102 (147)
..++.|. ..-..+........|..|+++|..+.++-.... ..|..-+|.+.|.+.++
T Consensus 354 il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~ 412 (493)
T KOG1330|consen 354 ILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK 412 (493)
T ss_pred HHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence 3344444 334445666778899999999999999966544 44445556577777665
No 263
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=91.43 E-value=4.7 Score=30.48 Aligned_cols=99 Identities=11% Similarity=-0.008 Sum_probs=63.3
Q ss_pred chhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc-------ccc-----------------------HHHHHHHHHHHhhc
Q psy4740 4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-------RQS-----------------------ANWLIALRFFEGLG 53 (147)
Q Consensus 4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-------~~~-----------------------~~~~~~~~~l~g~~ 53 (147)
+..++.++..+.+++-.....+....+++++.. +++ .|...+..++.-+.
T Consensus 81 iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELW 160 (509)
T COG3202 81 IYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELW 160 (509)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHH
Confidence 456788888888887766666666555555431 111 01111222222222
Q ss_pred cccCcc-cHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 54 EGTTFP-ALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 54 ~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
.+.... .-..+++|.+..++-.|..++.+...+++..++..+...+..+
T Consensus 161 gslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 161 GSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222222 3456789999999999999999999999998888888777664
No 264
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=90.86 E-value=1.3 Score=32.75 Aligned_cols=97 Identities=16% Similarity=0.096 Sum_probs=61.7
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhh---ccc-c----cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF---AAR-Q----SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTER 74 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~~-~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 74 (147)
+...++.+|+|..+.=.++.........++.. .+. + +...++.+-++.-+|.=+..-....++.|..|+++|
T Consensus 311 ~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~R 390 (432)
T PF06963_consen 311 WVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESER 390 (432)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHh
Confidence 45667889999888777665544433332211 111 1 223334444444444444556677888999999999
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHH
Q psy4740 75 GKIGSFVFAGNQIGTVFSSFLSGFL 99 (147)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~l 99 (147)
|...+.-++..++-..+...+.-..
T Consensus 391 g~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 391 GAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998888888777765554443
No 265
>KOG3880|consensus
Probab=89.80 E-value=2.7 Score=30.03 Aligned_cols=61 Identities=25% Similarity=0.222 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHH
Q psy4740 38 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGF 98 (147)
Q Consensus 38 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 98 (147)
++++...+.-+.-|+-.|..+....--+.+-.++++|-.+++.....-++|..++..++-.
T Consensus 340 psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp 400 (409)
T KOG3880|consen 340 PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP 400 (409)
T ss_pred cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence 6777777777888998888888888778888899999999999888777777766655443
No 266
>KOG4332|consensus
Probab=88.73 E-value=4 Score=28.79 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy4740 40 ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGV 119 (147)
Q Consensus 40 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 119 (147)
+..-+++..+.-.+.|..+|.....-++..|++.|...+.......++-.-++-+ ..-.+....+-|.+|.++.+...
T Consensus 344 ~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLy--nlh~~~~p~~tr~mf~icS~~~~ 421 (454)
T KOG4332|consen 344 PSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLY--NLHVDAFPTTTRNMFGICSAFLF 421 (454)
T ss_pred chHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhe--ecccccCccccchhhhhhHHHHH
Confidence 3344555566667788899999999999999999999998876654433222210 00011112355678888887776
Q ss_pred HHHHH
Q psy4740 120 LWFVA 124 (147)
Q Consensus 120 ~~~~~ 124 (147)
+..+.
T Consensus 422 ~a~i~ 426 (454)
T KOG4332|consen 422 VASIL 426 (454)
T ss_pred HHHHH
Confidence 65444
No 267
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=88.42 E-value=9.5 Score=29.13 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=24.6
Q ss_pred ccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHH
Q psy4740 59 PALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFL 99 (147)
Q Consensus 59 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 99 (147)
.++-.+.-.+.++++++.+-.-...+.+.|..++..+.-.+
T Consensus 137 IAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 137 IAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred ceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 34445555666778887776666666666666655444333
No 268
>KOG0637|consensus
Probab=85.16 E-value=0.49 Score=35.18 Aligned_cols=99 Identities=15% Similarity=0.046 Sum_probs=53.3
Q ss_pred chhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHH-------------------
Q psy4740 4 PGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL------------------- 64 (147)
Q Consensus 4 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~------------------- 64 (147)
..-++.||+|-|+.+..+...+.++..+.+.. .+......-+...|+-.+.........
T Consensus 351 ~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~--~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf 428 (498)
T KOG0637|consen 351 LVEKLSRKFGTRKRYWGGVNAFGLATGLAGLV--LNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPF 428 (498)
T ss_pred HHHHHHHhcCcceEEeehhHHHHHHHHHHhhh--hhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCcccccccccc
Confidence 44678899996666665555455555555544 444444444445554333332222222
Q ss_pred --hhhhcCCcc--hhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC
Q psy4740 65 --LAQWVPPTE--RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD 104 (147)
Q Consensus 65 --~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 104 (147)
.+....+.. +|...++.+....+..++.....|.+.+..+
T Consensus 429 ~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G 472 (498)
T KOG0637|consen 429 ALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG 472 (498)
T ss_pred ccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence 221122222 3455556777777777777766777777654
No 269
>KOG1237|consensus
Probab=82.51 E-value=8.1 Score=29.88 Aligned_cols=65 Identities=20% Similarity=0.176 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc
Q psy4740 39 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT 103 (147)
Q Consensus 39 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 103 (147)
+..|.+==.++.|++.........-+.-+-+|++-|..+.++......+|..+...+.......+
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555588999999999988889999999999999999999999999999988887766654
No 270
>KOG3626|consensus
Probab=81.35 E-value=5.1 Score=31.85 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHh-hhhhHHHHHHHHHHHHHhhc
Q psy4740 40 ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA-GNQIGTVFSSFLSGFLLKYT 103 (147)
Q Consensus 40 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~ 103 (147)
+..+++..++..+..+...+....++-...++++|..++|+..+ ..-+|.+=+|.+.|+++|.+
T Consensus 586 ~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~t 650 (735)
T KOG3626|consen 586 FLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTT 650 (735)
T ss_pred hHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence 33444444444444444445566667778899999999999665 66678888999999998853
No 271
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=79.92 E-value=2.1 Score=24.08 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=25.0
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHH
Q psy4740 5 GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW 42 (147)
Q Consensus 5 ~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (147)
..++.++..+++.+..+.+...+..+.++.. ++.+.
T Consensus 47 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~--~~~~~ 82 (85)
T PF06779_consen 47 ASRLPRHSRPRRLLRAGLLLTVLSTAAMALT--HSFWL 82 (85)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHH--hchHH
Confidence 4455566566777888888888888888777 55443
No 272
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=79.58 E-value=15 Score=27.33 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHH
Q psy4740 39 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSG 97 (147)
Q Consensus 39 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 97 (147)
+-+..++..++.|+..|-.......+..+..++++|-.+..+......+|-.+|..++-
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777899999998888888888888888899988888888777777777766543
No 273
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=78.29 E-value=25 Score=26.62 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=47.7
Q ss_pred HHhhccccCcccHHHHhhhhcCC-cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740 49 FEGLGEGTTFPALNTLLAQWVPP-TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 49 l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (147)
+.++.....+..--..+.|.+|+ ++|...++.++...++..++..++.+.+.+. .||.....+.-++.++
T Consensus 275 ~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~--~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 275 AYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRK--YGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHH
Confidence 34444444455555667777765 5788889988888888887777777888888 7998765555444433
No 274
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=77.02 E-value=5 Score=27.71 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=33.9
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHH---HhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 72 TERGKIGSFVFAGNQIGTVFSSFLSGFL---LKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 72 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
++|+........+.++|.++.-...-.. .+.-..+|++.+.+.+++..+-.+...++-.|
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~ 64 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKN 64 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455555555556677776654432211 11111479999988888876655555555443
No 275
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=76.92 E-value=8.1 Score=23.88 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=18.2
Q ss_pred hhhhcCCcchhHHHHHHHhhhhhHH
Q psy4740 65 LAQWVPPTERGKIGSFVFAGNQIGT 89 (147)
Q Consensus 65 ~~~~~~~~~r~~~~~~~~~~~~~g~ 89 (147)
+.|++|+..|....+..........
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~~k 84 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSAVK 84 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999888877665444333
No 276
>KOG3762|consensus
Probab=76.63 E-value=1.9 Score=33.01 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=23.0
Q ss_pred CcchhhhhhhhcchHHHHHHH-HHHHHHHHHhhhc
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGI-LSTAIFTLLTPFA 35 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~-~~~~~~~~~~~~~ 35 (147)
.|++|.++||+.+||-++++. +....+.++..+.
T Consensus 63 ~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 63 APLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 578999999998776666654 4445555555444
No 277
>KOG3097|consensus
Probab=75.51 E-value=13 Score=26.97 Aligned_cols=94 Identities=16% Similarity=0.212 Sum_probs=58.7
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCC--cch------
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPP--TER------ 74 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r------ 74 (147)
++.+.+..++|-|+++.++...+........ .+.+..++-.-...|++.+..+..--+++++.... ++|
T Consensus 76 m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl---~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~ 152 (390)
T KOG3097|consen 76 MFMPLLIRFLGTKWTMVLAVFPYALYIAANL---EPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGD 152 (390)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc---chhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccC
Confidence 3455778889999998887766655433221 14677788888899999998887766666554322 233
Q ss_pred ---h----HHHHHHHhhhhhHHHHHHHHHHHH
Q psy4740 75 ---G----KIGSFVFAGNQIGTVFSSFLSGFL 99 (147)
Q Consensus 75 ---~----~~~~~~~~~~~~g~~~~~~~~~~l 99 (147)
. ....++++..-+|..++.++....
T Consensus 153 ~~~~~ffg~Ffii~~~~qv~gn~issli~~~~ 184 (390)
T KOG3097|consen 153 GMKVRFFGEFFIIFQCAQVWGNLISSLIMTLF 184 (390)
T ss_pred ceeeeehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 333445555555555555554433
No 278
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=71.84 E-value=12 Score=23.29 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=16.4
Q ss_pred hhhhcCCcchhHHHHHHHhhhh
Q psy4740 65 LAQWVPPTERGKIGSFVFAGNQ 86 (147)
Q Consensus 65 ~~~~~~~~~r~~~~~~~~~~~~ 86 (147)
+.|++|+..|....+.+.....
T Consensus 58 LkDm~Pp~~R~~i~~~~s~t~s 79 (145)
T TIGR00986 58 LKDIVPPTTRGWIYHKYSTTTN 79 (145)
T ss_pred HHhhCCHHHHHHHHHHHHHHHH
Confidence 5789999999877776655433
No 279
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=71.54 E-value=5.3 Score=30.30 Aligned_cols=78 Identities=8% Similarity=-0.132 Sum_probs=51.0
Q ss_pred chhhhhhhhcchHHHHH--HHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 4 PGGLLAQKFGGKHTLGF--GILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 4 ~~g~l~d~~gr~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
..|++-.++.+---+.+ ..++.+...+++... +|.+..+++.++.+.......+....-+++....+.-|..+|+.
T Consensus 317 ~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t--~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiN 394 (511)
T TIGR00806 317 IAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQS--HDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGIN 394 (511)
T ss_pred HHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecH
Confidence 44555445533222333 334444444455555 89999999999998888888887777777777777777777775
Q ss_pred Hh
Q psy4740 82 FA 83 (147)
Q Consensus 82 ~~ 83 (147)
+.
T Consensus 395 tf 396 (511)
T TIGR00806 395 TF 396 (511)
T ss_pred HH
Confidence 54
No 280
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=69.94 E-value=34 Score=23.79 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhhcccccHHHHHHHHHHHhh
Q psy4740 21 GILSTAIFTLLTPFAARQSANWLIALRFFEGL 52 (147)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 52 (147)
+.+.+++..+...... ++.+.+.+..++.++
T Consensus 5 ~~~~~~~~s~~~~l~~-~~~~l~~~~~~~~~F 35 (284)
T PF12805_consen 5 TLLCFALASLLVGLLF-PYPWLLILVLALLTF 35 (284)
T ss_pred HHHHHHHHHHHHHHHh-hccHHHHHHHHHHHH
Confidence 3333434444333331 333444444444444
No 281
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=69.76 E-value=23 Score=22.37 Aligned_cols=82 Identities=16% Similarity=0.192 Sum_probs=45.6
Q ss_pred hhhhhhcchHHHHHHHHH------HHHHHHHhhhc--ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 7 LLAQKFGGKHTLGFGILS------TAIFTLLTPFA--ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 7 ~l~d~~gr~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
.++||.-||..+..+.=. +.+...+.-.. ..+++..++....+.|.+. ....+.+++-..++++.|..+
T Consensus 56 ~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSll 132 (153)
T PF11947_consen 56 VVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLL 132 (153)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCcc
Confidence 367888777665544221 11111111110 0134455555555555542 234666777778888899998
Q ss_pred HHHHhhhhhHHHH
Q psy4740 79 SFVFAGNQIGTVF 91 (147)
Q Consensus 79 ~~~~~~~~~g~~~ 91 (147)
|+-..-.|++.+.
T Consensus 133 G~~e~~~N~~r~~ 145 (153)
T PF11947_consen 133 GWEEFKRNWGRMW 145 (153)
T ss_pred cHHHHHHhHHHHH
Confidence 8877766666543
No 282
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=69.75 E-value=5 Score=31.31 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=42.4
Q ss_pred HHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHh-hhhhHHHHHHHHHHHHHhhc
Q psy4740 44 IALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA-GNQIGTVFSSFLSGFLLKYT 103 (147)
Q Consensus 44 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~ 103 (147)
++..++..+..+.........+-...|+++|..++|+... ..-+|.+=+|++.|.++|.+
T Consensus 522 ~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~s 582 (633)
T TIGR00805 522 LILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVS 582 (633)
T ss_pred HHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhch
Confidence 3333344444444445555666778899999999999665 56678899999999998853
No 283
>KOG1479|consensus
Probab=69.42 E-value=24 Score=26.17 Aligned_cols=58 Identities=24% Similarity=0.333 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHH
Q psy4740 38 QSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFL 95 (147)
Q Consensus 38 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 95 (147)
.+-+++++...+.|+..|-.......+..+..|++++-.+-.+.......|-..|..+
T Consensus 341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4556778888999999888888888888888888888666666665555555555433
No 284
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=68.70 E-value=34 Score=27.15 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHH
Q psy4740 40 ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSG 97 (147)
Q Consensus 40 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 97 (147)
.++.+--.++.+.+.........-+..+..|++-|....++.....++|..+...+..
T Consensus 565 ~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~ 622 (654)
T TIGR00926 565 ILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAE 622 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555577788887777777777788889999999999988888888877655554
No 285
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=66.19 E-value=34 Score=22.28 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=30.7
Q ss_pred HHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740 61 LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG 118 (147)
Q Consensus 61 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 118 (147)
..+.+.+..|+++|.++.-+.....-+-+.+.-..+.++.+. |++..++.++..
T Consensus 17 vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~----~~~i~~igG~~L 70 (183)
T PF03741_consen 17 VIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSI----FPWILLIGGLFL 70 (183)
T ss_pred HHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 444555667887776666554444445555555666666555 244555554443
No 286
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=61.96 E-value=70 Score=25.72 Aligned_cols=39 Identities=13% Similarity=0.036 Sum_probs=22.6
Q ss_pred cchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhh
Q psy4740 13 GGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGL 52 (147)
Q Consensus 13 gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 52 (147)
||.+-++++.+++.++.+...... +..+.+....++.++
T Consensus 55 ~R~~~l~it~~~f~i~sl~v~ll~-~~p~~~~~~l~~~tf 93 (701)
T TIGR01667 55 GRLKNLIITLSCFSIASFLVQLLF-PKPWLFPFLLTLLTF 93 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 456667777777777777665542 333444444444444
No 287
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=60.88 E-value=2.6 Score=29.56 Aligned_cols=58 Identities=28% Similarity=0.313 Sum_probs=3.4
Q ss_pred cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHH
Q psy4740 39 SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 96 (147)
Q Consensus 39 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 96 (147)
+-+..++..++.|+..|-.......+..+..++++|..+-.+.......|-.+|..++
T Consensus 247 ~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 247 SDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp --------------------HHHH----------------------------------
T ss_pred chHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677788999999988888888889999999998877777777677766665443
No 288
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=58.05 E-value=99 Score=24.97 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=21.4
Q ss_pred cchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhh
Q psy4740 13 GGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGL 52 (147)
Q Consensus 13 gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 52 (147)
||.+-+.++.+.+.++.+...... +..+++....++.++
T Consensus 55 ~R~~~l~~t~~~f~i~sl~v~ll~-~~p~lf~~~l~~~tf 93 (704)
T TIGR01666 55 GRLKNVIFTLICFSIASFSVELLF-GKPWLFAVGLTVSTF 93 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHH
Confidence 555666677777766666654442 334444444444444
No 289
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=56.09 E-value=90 Score=23.91 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=42.2
Q ss_pred hhccccCcccHHHHhhhhcCC-cchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740 51 GLGEGTTFPALNTLLAQWVPP-TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG 118 (147)
Q Consensus 51 g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 118 (147)
|+..-.....--..+.+.+|+ +++...+|-.+...++-.++...+++.+.+. .||+..-.+.-++.
T Consensus 293 gi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~--~GW~~~AlitPiv~ 359 (491)
T PF03219_consen 293 GISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRR--FGWRTAALITPIVI 359 (491)
T ss_pred HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHhHHHH
Confidence 333333334444456666654 4567777777777777777777888888888 79987665543333
No 290
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.55 E-value=42 Score=19.91 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=19.6
Q ss_pred CcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhc
Q psy4740 71 PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT 103 (147)
Q Consensus 71 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 103 (147)
++.++...++--+.--+++++.-...|++.+++
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667776655555555555555566666654
No 291
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=55.54 E-value=26 Score=20.48 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=21.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 105 GDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
.+|..+|++...+.++...+.+...||+.
T Consensus 57 e~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 57 EGWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 68999988877777776666666666653
No 292
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=54.59 E-value=4.1 Score=31.17 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHh-hhhhHHHHHHHHHHHHHhh
Q psy4740 42 WLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA-GNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 42 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~ 102 (147)
.+++..++.-+..+.........+-...|+++|..++|+... ..-+|.+=+|++.|.++|.
T Consensus 453 ~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 453 PFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 333444444444444555556666778899999999999665 5567778899999998886
No 293
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=53.17 E-value=95 Score=23.30 Aligned_cols=51 Identities=22% Similarity=0.158 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHH
Q psy4740 40 ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFL 95 (147)
Q Consensus 40 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 95 (147)
+...++..++.|++.+.......++.+. +|++ .++.+..+.++++.++..+
T Consensus 106 f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 106 FVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHH
Confidence 4555666678888888888877777774 5543 3344444555555555444
No 294
>KOG1479|consensus
Probab=52.50 E-value=96 Score=23.16 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc
Q psy4740 40 ANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE 73 (147)
Q Consensus 40 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 73 (147)
+...++..++.+.+.+..........+++ |++.
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~y 149 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEY 149 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHH
Confidence 44555666777777777777777777664 4443
No 295
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=51.57 E-value=46 Score=23.42 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=16.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 106 DWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
.|..+-++..++.++.++++.|+.++++
T Consensus 260 Pcgiaalvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555555566665666666655543
No 296
>KOG3810|consensus
Probab=50.90 E-value=20 Score=26.31 Aligned_cols=78 Identities=13% Similarity=-0.038 Sum_probs=48.6
Q ss_pred chhhhhhhhcchHH--HHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 4 PGGLLAQKFGGKHT--LGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 4 ~~g~l~d~~gr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
..|.+.-.+.|..- +..+.+..+...+.+... ++.+..+++.++...-.....+....-+++-.+.+.-|..+|+.
T Consensus 290 ~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t--~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiN 367 (433)
T KOG3810|consen 290 AAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT--QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGIN 367 (433)
T ss_pred HHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc--cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehH
Confidence 34455445544433 333444444444444444 78888888888887777777777777777777777777777764
Q ss_pred Hh
Q psy4740 82 FA 83 (147)
Q Consensus 82 ~~ 83 (147)
..
T Consensus 368 TF 369 (433)
T KOG3810|consen 368 TF 369 (433)
T ss_pred HH
Confidence 43
No 297
>KOG3574|consensus
Probab=49.74 E-value=23 Score=26.44 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=44.6
Q ss_pred HHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 46 LRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 46 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
...+.+...-..+....++.++..||...|+.|++.+...++|+-.-..+...+.+.
T Consensus 375 ~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ 431 (510)
T KOG3574|consen 375 SYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADG 431 (510)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhccc
Confidence 345555544445666778889999999999999999999999988777777777664
No 298
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=49.38 E-value=35 Score=23.23 Aligned_cols=52 Identities=29% Similarity=0.388 Sum_probs=31.9
Q ss_pred HHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHH
Q psy4740 44 IALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 96 (147)
Q Consensus 44 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 96 (147)
.....-.|+|.+........-+.+.+| +......++....+-+....|-+..
T Consensus 175 ~ALAMasGvGSgSMMaAa~~aL~~~~P-~~a~~i~A~AaaSNllt~~~G~Y~~ 226 (241)
T PF11299_consen 175 YALAMASGVGSGSMMAAASGALAAAYP-EMADQILAFAAASNLLTSVTGLYMS 226 (241)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHCc-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677777776667777777776 5555666665555555555554443
No 299
>PTZ00370 STEVOR; Provisional
Probab=48.86 E-value=30 Score=24.30 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=16.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 105 GDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
..|..+-++..++.++.++++.|+.++++
T Consensus 255 ~Pygiaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 255 YPYGIAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35555555555566665666666655543
No 300
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=46.07 E-value=35 Score=25.42 Aligned_cols=74 Identities=12% Similarity=-0.017 Sum_probs=34.2
Q ss_pred hhhhhhhhcchHHHHHH--HHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH
Q psy4740 5 GGLLAQKFGGKHTLGFG--ILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80 (147)
Q Consensus 5 ~g~l~d~~gr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (147)
.|++..++.+-.-+.++ .++.+...+++... ++.+..+++-++.+.......+.+..-++.....+.-+..+|+
T Consensus 305 ~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t--~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGi 380 (412)
T PF01770_consen 305 AGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT--GNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGI 380 (412)
T ss_pred HhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeee
Confidence 44454444443333322 33333333444444 6777777766666555444444444444444444444433333
No 301
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.
Probab=45.56 E-value=1.3e+02 Score=22.63 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=15.6
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHH
Q psy4740 72 TERGKIGSFVFAGNQIGTVFSSFLS 96 (147)
Q Consensus 72 ~~r~~~~~~~~~~~~~g~~~~~~~~ 96 (147)
+-+...+|+...-.++|+.+.+..+
T Consensus 178 ~lkYaTLGvLFvNISIGGtLT~fAA 202 (438)
T PF07399_consen 178 RLKYATLGVLFVNISIGGTLTSFAA 202 (438)
T ss_pred HHHHHHHHHHheEeeeccccccccc
Confidence 3445556666666677777766554
No 302
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=44.96 E-value=95 Score=20.91 Aligned_cols=41 Identities=22% Similarity=0.428 Sum_probs=25.3
Q ss_pred HHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 62 NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 62 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
.+.+.+..|+++|.++.-+-....-+-+.+--..+.++.+.
T Consensus 15 ia~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~~ 55 (215)
T TIGR03716 15 LAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLIKF 55 (215)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444557888877777665555555566655666666554
No 303
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=43.82 E-value=18 Score=18.68 Aligned_cols=26 Identities=12% Similarity=0.324 Sum_probs=18.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 105 GDWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
.+||....+.+.+.++.+.++-...+
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Ypi~~~ 28 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALYPIYFR 28 (58)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhcc
Confidence 48998888888888776655444433
No 304
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=42.54 E-value=1.1e+02 Score=21.14 Aligned_cols=56 Identities=21% Similarity=0.270 Sum_probs=34.5
Q ss_pred cccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHH
Q psy4740 54 EGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYL 113 (147)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 113 (147)
.|.......+.+.+.+|+++|-++.-+--...-+-+++--..+.++.+. |.+.+++
T Consensus 30 L~iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l----~~~l~~~ 85 (254)
T COG0861 30 LGIDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLASISWLLTL----TQPLLYI 85 (254)
T ss_pred HHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHH
Confidence 3445556677888889998887776664444444555555556666555 4445555
No 305
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=40.13 E-value=48 Score=25.59 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=45.6
Q ss_pred HHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 46 LRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 46 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
..++..+..-..+....++-++..+|..=|++|.+.+...|+|+..-..+.-++.+.
T Consensus 411 ~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 411 QHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 335555666666778888899999999999999999999999998877776666653
No 306
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.20 E-value=66 Score=21.02 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=12.0
Q ss_pred ChhHHHHHHHHHHHHHH
Q psy4740 106 DWPEIFYLFGILGVLWF 122 (147)
Q Consensus 106 ~~~~~~~~~~~~~~~~~ 122 (147)
-|+|.|.+..++..+.+
T Consensus 10 ~WKw~f~iLLAln~l~~ 26 (197)
T COG4698 10 YWKWLFFILLALNTLLA 26 (197)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999888776665544
No 307
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=38.64 E-value=1.8e+02 Score=22.42 Aligned_cols=42 Identities=17% Similarity=0.380 Sum_probs=29.6
Q ss_pred hcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-CChhH
Q psy4740 68 WVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD-GDWPE 109 (147)
Q Consensus 68 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~ 109 (147)
...+++||..+...-....+.+.++...++.+....+ ..|+.
T Consensus 289 ~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~ 331 (521)
T PF02990_consen 289 FLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKK 331 (521)
T ss_pred hccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceee
Confidence 4566788888888777777777777788777776542 35654
No 308
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=38.08 E-value=1.2e+02 Score=19.96 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=12.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHhh
Q psy4740 81 VFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
.+...-++-.+|..+++.+.+.
T Consensus 167 ~~~~~i~~f~~Ga~~ga~l~~~ 188 (209)
T PF06912_consen 167 RYLLIILSFFIGAILGALLYRR 188 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555566666666665
No 309
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=32.87 E-value=1.3e+02 Score=21.23 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=11.4
Q ss_pred CChhHHHHHHHHHHHHHHHH
Q psy4740 105 GDWPEIFYLFGILGVLWFVA 124 (147)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~ 124 (147)
..|++.|++..++.++..+.
T Consensus 288 l~~~~gy~~~l~~m~~i~~~ 307 (318)
T TIGR00383 288 LNWKYGYPAVLIVMAVIALG 307 (318)
T ss_pred ccchhHHHHHHHHHHHHHHH
Confidence 35777777655555544433
No 310
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=32.68 E-value=1.7e+02 Score=20.30 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 108 PEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
.+.-++..++.++......+..++
T Consensus 115 ~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 115 PWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred hHHHHHHHHHHHHHHHheeeecCC
Confidence 444445555554444444444343
No 311
>PLN02332 membrane bound O-acyl transferase (MBOAT) family protein
Probab=32.11 E-value=2.3e+02 Score=21.59 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=11.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhh
Q psy4740 106 DWPEIFYLFGILGVLWFVAWCFL 128 (147)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~ 128 (147)
-|+..+++.-+..++..++..++
T Consensus 429 ~~~svyf~~hi~~~~~~~~~~~~ 451 (465)
T PLN02332 429 AYGSVYYIGTIIPVVLILLGSVV 451 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 35666666555554443333333
No 312
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=31.09 E-value=1e+02 Score=17.29 Aligned_cols=57 Identities=14% Similarity=0.065 Sum_probs=30.0
Q ss_pred CcccHHHHhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy4740 57 TFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILG 118 (147)
Q Consensus 57 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 118 (147)
..|..+..+.|.-=+ ....+...+.+.+|..+|.+....+.++ ...+..+....+..
T Consensus 11 yTplLP~M~~~~~ls---~~~ag~lasaNy~GYL~GAl~~~~~~~~--~~~~~~~~~~l~~~ 67 (85)
T PF06779_consen 11 YTPLLPLMQADGGLS---LSQAGWLASANYLGYLVGALLASRLPRH--SRPRRLLRAGLLLT 67 (85)
T ss_pred HHhHhHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHH
Confidence 344555555554211 2333555666667777777777776655 34344444443333
No 313
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=30.01 E-value=72 Score=15.12 Aligned_cols=19 Identities=32% Similarity=0.209 Sum_probs=11.6
Q ss_pred hhcchHHHHHHHHHHHHHH
Q psy4740 11 KFGGKHTLGFGILSTAIFT 29 (147)
Q Consensus 11 ~~gr~~~~~~~~~~~~~~~ 29 (147)
|.+|+.++..+..+.+...
T Consensus 17 ki~P~~Vl~~si~fi~~V~ 35 (41)
T PF03911_consen 17 KIDPKTVLIISIAFIAIVI 35 (41)
T ss_dssp -BSCCHHHHHHHHHHHHHH
T ss_pred eeCCeehHHHHHHHHHHHH
Confidence 5678888777655544443
No 314
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=28.93 E-value=1.8e+02 Score=19.31 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy4740 89 TVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 120 (147)
..+....+..+.+..+-+- ..|-+.+.+.+.
T Consensus 51 ll~f~~~G~~iL~~fgIsl-~af~IaGGiiL~ 81 (203)
T PF01914_consen 51 LLIFAFFGQLILNFFGISL-PAFRIAGGIILF 81 (203)
T ss_pred HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Confidence 3444455566666633232 345565555544
No 315
>KOG2601|consensus
Probab=27.63 E-value=83 Score=23.65 Aligned_cols=143 Identities=7% Similarity=0.044 Sum_probs=0.0
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc-----ccc-----cHHHHHHHHHHHhhccccCcccHHH---------
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA-----ARQ-----SANWLIALRFFEGLGEGTTFPALNT--------- 63 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~l~g~~~~~~~~~~~~--------- 63 (147)
++.|...|+..|+|++.....+..+....++.. .++ +...+..+.++.-...+..--...+
T Consensus 81 ~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDW 160 (503)
T KOG2601|consen 81 PIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDW 160 (503)
T ss_pred HHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccE
Q ss_pred --HhhhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCh
Q psy4740 64 --LLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPASHPYISQ 141 (147)
Q Consensus 64 --~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (147)
.++|--+++.-....+..-..-.....+.|++.|.+.++ .+-|..-.+.++-.++....-+++....-...+....
T Consensus 161 vvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitf--vsl~~~~g~f~~w~~vsm~~ey~ll~~vy~g~palav 238 (503)
T KOG2601|consen 161 VVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITF--VSLRASAGTFAAWALVSMWVEYWLLISVYIGVPALAV 238 (503)
T ss_pred EEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhccccee--echhhhhhhhHHHHHHHHHHHHHHHHHHHhCCcHHhh
Q ss_pred hhhhcC
Q psy4740 142 REKEYK 147 (147)
Q Consensus 142 ~~~~~~ 147 (147)
+..+.+
T Consensus 239 s~~~k~ 244 (503)
T KOG2601|consen 239 SKGRKN 244 (503)
T ss_pred hcchhh
No 316
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=27.57 E-value=2.2e+02 Score=19.98 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=17.5
Q ss_pred HHHHHHHHhhccccCcccHHHHhhhhcCCcch
Q psy4740 43 LIALRFFEGLGEGTTFPALNTLLAQWVPPTER 74 (147)
Q Consensus 43 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 74 (147)
.-..|.+.|+-.-.. ...++++.-+||++++
T Consensus 22 ~~~lr~~~g~~~vlf-~PGy~l~~~lfp~~~~ 52 (287)
T PF07760_consen 22 IPPLRVILGFPFVLF-LPGYALVAALFPRKHD 52 (287)
T ss_pred hhHHHHHHHHHHHHH-hccHHHHHHHccCcCC
Confidence 345565555544322 3457777778885543
No 317
>PRK14229 camphor resistance protein CrcB; Provisional
Probab=27.53 E-value=1.4e+02 Score=17.59 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=11.9
Q ss_pred HHhhccccCcccHHHHhhhhcC
Q psy4740 49 FEGLGEGTTFPALNTLLAQWVP 70 (147)
Q Consensus 49 l~g~~~~~~~~~~~~~~~~~~~ 70 (147)
..+.|.-+.+.+-.++..|...
T Consensus 58 ~l~tGf~GgfTTFSTf~~e~~~ 79 (108)
T PRK14229 58 ILATGFCGGLTTFSTLNDELQR 79 (108)
T ss_pred HHHhhHccccccHHHHHHHHHH
Confidence 3344444555666666666543
No 318
>PRK09546 zntB zinc transporter; Reviewed
Probab=27.35 E-value=1.4e+02 Score=21.18 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=12.7
Q ss_pred CChhHHHHHHHHHHHHHHH-HHHhh
Q psy4740 105 GDWPEIFYLFGILGVLWFV-AWCFL 128 (147)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~-~~~~~ 128 (147)
..|++.|++..++.++..+ ..+++
T Consensus 294 l~~~~gy~~~l~im~~i~~~~~~~f 318 (324)
T PRK09546 294 GGWPFGFSIFCLLLVVLIGGVAWWL 318 (324)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3577777755555444333 33444
No 319
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=26.68 E-value=1.2e+02 Score=16.58 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy4740 83 AGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGV 119 (147)
Q Consensus 83 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 119 (147)
....++.+++ .+.|+..+. .+..+++.++..+
T Consensus 15 ~il~~~~iis-fi~Gy~~q~----~~~~~~~~~~g~~ 46 (76)
T PF06645_consen 15 YILIISAIIS-FIVGYITQS----FSYTFYIYGAGVV 46 (76)
T ss_pred HHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHH
Confidence 3334444444 344444333 3445555444433
No 320
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=26.11 E-value=61 Score=16.81 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=11.5
Q ss_pred CcchhhhhhhhcchHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGF 20 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~ 20 (147)
.+..+.++|+.|-.+..+.
T Consensus 4 ~lvas~iAd~~GiTRSvIV 22 (61)
T PF08222_consen 4 RLVASKIADRVGITRSVIV 22 (61)
T ss_dssp EE-HHHHHHHHT--HHHHH
T ss_pred eehHHHHHHHhCccHHHHH
Confidence 4567889999996665443
No 321
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=25.46 E-value=77 Score=18.38 Aligned_cols=10 Identities=0% Similarity=0.099 Sum_probs=4.3
Q ss_pred HHhhccCCCC
Q psy4740 125 WCFLCYNDPA 134 (147)
Q Consensus 125 ~~~~~~~~~~ 134 (147)
+++..+++++
T Consensus 83 YFVILRer~~ 92 (101)
T PF06024_consen 83 YFVILRERQK 92 (101)
T ss_pred EEEEEecccc
Confidence 3444444433
No 322
>PRK15049 L-asparagine permease; Provisional
Probab=24.24 E-value=3.3e+02 Score=20.83 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=9.1
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q psy4740 106 DWPEIFYLFGILGVLWFVAW 125 (147)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~ 125 (147)
+.++.........++..+.+
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~ 465 (499)
T PRK15049 446 NGTYTIAALPIIGILLVIGW 465 (499)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 35555555444444433333
No 323
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=23.75 E-value=76 Score=18.73 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHH
Q psy4740 87 IGTVFSSFLSGFLL 100 (147)
Q Consensus 87 ~g~~~~~~~~~~l~ 100 (147)
+|......++-.+.
T Consensus 66 iG~v~~~l~g~~~f 79 (106)
T COG2076 66 IGIVGTALVGVLLF 79 (106)
T ss_pred HHHHHHHHHHHHhc
Confidence 34433334444443
No 324
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=23.51 E-value=27 Score=15.98 Aligned_cols=10 Identities=20% Similarity=0.581 Sum_probs=0.0
Q ss_pred hhhhcchHHH
Q psy4740 9 AQKFGGKHTL 18 (147)
Q Consensus 9 ~d~~gr~~~~ 18 (147)
+||+||-...
T Consensus 3 sd~FGRd~~~ 12 (36)
T PF08080_consen 3 SDRFGRDLSY 12 (36)
T ss_dssp ----------
T ss_pred cchhcchhhH
Confidence 5777775443
No 325
>COG5346 Predicted membrane protein [Function unknown]
Probab=23.49 E-value=1.9e+02 Score=17.68 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=11.5
Q ss_pred hhhhhhhcchHHHHHHHHH
Q psy4740 6 GLLAQKFGGKHTLGFGILS 24 (147)
Q Consensus 6 g~l~d~~gr~~~~~~~~~~ 24 (147)
|.+..|+.|+-.++++..+
T Consensus 83 ~~~~~~~tril~liFgi~L 101 (136)
T COG5346 83 GQLYAKLTRILLLIFGIFL 101 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666554
No 326
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=23.39 E-value=1.6e+02 Score=21.12 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH----HHhhhhhHHHHHHHHHHHHHh
Q psy4740 42 WLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF----VFAGNQIGTVFSSFLSGFLLK 101 (147)
Q Consensus 42 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~~g~~~~~~~~~~l~~ 101 (147)
.+.++-++.|++.+ .++...+...++.-....+. .......|...||.++..+..
T Consensus 210 aF~isa~~AGiAGa-----L~a~~~~~v~p~~f~~~~S~~~l~~vvlGG~Gt~~G~v~Ga~l~~ 268 (314)
T COG4177 210 AFVISAAIAGIAGA-----LYALYLGFVSPESFSFTLSIEVLAMVVLGGAGTLFGALLGAVLVV 268 (314)
T ss_pred HHHHHHHHHHHHHH-----HHHHHhceeChhhccHHHHHHHHHHHHHcCccccHHHHHHHHHHH
Confidence 44455555555433 34444444444444444443 344556677777777776554
No 327
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=23.29 E-value=1.8e+02 Score=22.12 Aligned_cols=18 Identities=6% Similarity=-0.023 Sum_probs=7.5
Q ss_pred cchHHHHHHHHHHHHHHH
Q psy4740 13 GGKHTLGFGILSTAIFTL 30 (147)
Q Consensus 13 gr~~~~~~~~~~~~~~~~ 30 (147)
.|+.....+.++..++.+
T Consensus 321 Sr~V~~~aavili~lgl~ 338 (451)
T COG2233 321 SRYVIAGAAVILILLGLF 338 (451)
T ss_pred hhHHHHHHHHHHHHHHhh
Confidence 344444444444444443
No 328
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=23.09 E-value=1.8e+02 Score=22.89 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=21.3
Q ss_pred hhcCCcchhHHHHH-HHhhhhhHHHHHHHHHHHH
Q psy4740 67 QWVPPTERGKIGSF-VFAGNQIGTVFSSFLSGFL 99 (147)
Q Consensus 67 ~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l 99 (147)
|+.|.+++ ...+. .......|+++||.++...
T Consensus 48 DYVPtnk~-vlfGhHFaaIAGAGPivGPvlAAq~ 80 (575)
T COG1966 48 DYVPTNKW-VLFGHHFASIAGAGPIVGPALAAQY 80 (575)
T ss_pred ccccCCch-hhhHHHHHHHhccCcchhHHHHHHh
Confidence 45666655 44444 5557778888888887765
No 329
>KOG1278|consensus
Probab=23.03 E-value=3.3e+02 Score=21.60 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=5.5
Q ss_pred HHHHHHHhhccc
Q psy4740 44 IALRFFEGLGEG 55 (147)
Q Consensus 44 ~~~~~l~g~~~~ 55 (147)
++..++.|+-.|
T Consensus 369 ~~l~v~~G~~ag 380 (628)
T KOG1278|consen 369 VLLFVFMGFVAG 380 (628)
T ss_pred HHHHHHHHHhhh
Confidence 344455555433
No 330
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=22.94 E-value=2.5e+02 Score=20.59 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=10.6
Q ss_pred hhhhhhhhcchHHHHH
Q psy4740 5 GGLLAQKFGGKHTLGF 20 (147)
Q Consensus 5 ~g~l~d~~gr~~~~~~ 20 (147)
.-++.||||+|..-.+
T Consensus 69 ~e~l~~Ryg~~~~~~~ 84 (407)
T TIGR00813 69 PEYLEKRFGKRILRGL 84 (407)
T ss_pred hHHHHHHhCchHHHHH
Confidence 3467899998655433
No 331
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=22.70 E-value=1.5e+02 Score=16.48 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy4740 90 VFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121 (147)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 121 (147)
.++++....+.+.+-.||+..|++.+=-+.+.
T Consensus 27 g~~~lfa~~Ln~~~~~GfPlgfw~aaQGsi~~ 58 (81)
T PF13937_consen 27 GVGILFADELNQITFGGFPLGFWFAAQGSIIV 58 (81)
T ss_pred HHHHHHHHHHcCCeeCCCChHHHHHHHhHHHH
Confidence 34455666664443368888888765444443
No 332
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=22.50 E-value=1.3e+02 Score=21.50 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=12.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q psy4740 105 GDWPEIFYLFGILGVLWFVAWC 126 (147)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~ 126 (147)
..|++.|++..++.++.++..+
T Consensus 292 l~~~~Gy~~~l~~m~~~~~~~~ 313 (322)
T COG0598 292 LDWPYGYPIALILMLLLALLLY 313 (322)
T ss_pred CCCcccHHHHHHHHHHHHHHHH
Confidence 4677777766666555444433
No 333
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=22.24 E-value=2.9e+02 Score=19.44 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhccccCcccHHHHhhh
Q psy4740 40 ANWLIALRFFEGLGEGTTFPALNTLLAQ 67 (147)
Q Consensus 40 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 67 (147)
...+++.-++.|.+.=+..+.....=.|
T Consensus 204 ~~~f~I~~Fl~G~f~WgiQ~ViL~lPhE 231 (267)
T PF07672_consen 204 FAFFYIFGFLAGFFLWGIQGVILNLPHE 231 (267)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhcChhh
Confidence 4556666677776543333333333334
No 334
>COG1455 CelB Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]
Probab=22.03 E-value=1.1e+02 Score=23.02 Aligned_cols=9 Identities=33% Similarity=0.959 Sum_probs=4.8
Q ss_pred CChhHHHHH
Q psy4740 105 GDWPEIFYL 113 (147)
Q Consensus 105 ~~~~~~~~~ 113 (147)
.+||.....
T Consensus 389 ~~w~a~vlq 397 (432)
T COG1455 389 GDWRALVLQ 397 (432)
T ss_pred ccHHHHHHH
Confidence 467754333
No 335
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=21.74 E-value=1.5e+02 Score=17.01 Aligned_cols=19 Identities=32% Similarity=0.111 Sum_probs=11.7
Q ss_pred chHHHHHHHHHHHHHHHHh
Q psy4740 14 GKHTLGFGILSTAIFTLLT 32 (147)
Q Consensus 14 r~~~~~~~~~~~~~~~~~~ 32 (147)
+|+++++....++++.++.
T Consensus 2 ~kw~l~Lc~~SF~~G~lft 20 (95)
T PF13334_consen 2 RKWVLLLCIASFCAGMLFT 20 (95)
T ss_pred chHHHHHHHHHHHHHHHHh
Confidence 5666666666666665544
No 336
>PLN02453 complex I subunit
Probab=21.56 E-value=92 Score=18.23 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 105 GDWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
.+|...+++.....++.+.+.+-..||+
T Consensus 59 EdWE~p~Y~~~~~t~vil~Vgl~aKPDt 86 (105)
T PLN02453 59 EDWELPCYITSFLTIVILGVGLNAKPDT 86 (105)
T ss_pred ccchhhHHHHHHHHHHHHheeeeccCCC
Confidence 5899999988888777666666666664
No 337
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=21.53 E-value=1.5e+02 Score=19.01 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=14.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcc
Q psy4740 106 DWPEIFYLFGILGVLWFVAWCFLCY 130 (147)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (147)
.|...++....+.++++++..++.+
T Consensus 17 ~~~t~~~~iInFliL~~lL~~~l~~ 41 (173)
T PRK13453 17 EWGTVIVTVLTFIVLLALLKKFAWG 41 (173)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665565555555555544
No 338
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=21.34 E-value=2.4e+02 Score=20.30 Aligned_cols=19 Identities=21% Similarity=-0.038 Sum_probs=10.7
Q ss_pred CChhHHHHHHHHHHHHHHH
Q psy4740 105 GDWPEIFYLFGILGVLWFV 123 (147)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~ 123 (147)
..|++.|++...+.++..+
T Consensus 286 ~~~~~g~~~~l~~~~~~~~ 304 (316)
T PRK11085 286 LKWSFGYPGAIILMILAGL 304 (316)
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 4577777665555544443
No 339
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=20.44 E-value=3.6e+02 Score=19.87 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=37.4
Q ss_pred HHHhhccccCcccHHHHhhhhcCC---cchhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy4740 48 FFEGLGEGTTFPALNTLLAQWVPP---TERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 102 (147)
Q Consensus 48 ~l~g~~~~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 102 (147)
.+.|..++......+.++-.|.|. +.+..=.|++.....+...+|..+...+...
T Consensus 247 l~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 247 LLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456777777777888888777764 3344556777777777777777777655544
No 340
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=20.33 E-value=3.8e+02 Score=20.05 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=32.0
Q ss_pred HhhhhcCC-cchhHHHHHHHhhhhhHHHHHHHHHHHHHhh--cCCChhHHHHHHHHHHHH
Q psy4740 64 LLAQWVPP-TERGKIGSFVFAGNQIGTVFSSFLSGFLLKY--TDGDWPEIFYLFGILGVL 120 (147)
Q Consensus 64 ~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~ 120 (147)
.+.|.-.. -.|..+.+........|..+-|.+.-.++.. .+.++...|.....+.++
T Consensus 121 ~iP~M~k~GY~~~~A~av~aasgtlG~liPPsi~~ii~~~a~~~~si~~lf~agiiPgll 180 (416)
T PF06808_consen 121 TIPEMKKAGYPPEFAAAVIAASGTLGQLIPPSIGMIIYGMAVTGVSIGDLFIAGIIPGLL 180 (416)
T ss_pred HHHHHHHcCCCHHHhHHHHhhccccchhcchHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 34444332 2455677777778888888877766554433 234555555544444333
No 341
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=20.11 E-value=1.8e+02 Score=18.26 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=6.6
Q ss_pred HHHHHHhhccCC
Q psy4740 121 WFVAWCFLCYND 132 (147)
Q Consensus 121 ~~~~~~~~~~~~ 132 (147)
..++...+.||.
T Consensus 108 ~filmvVLiPEp 119 (144)
T PF01350_consen 108 FFILMVVLIPEP 119 (144)
T ss_pred HHHHHHhcccCC
Confidence 345555566663
Done!