Query psy4740
Match_columns 147
No_of_seqs 166 out of 1397
Neff 10.9
Searched_HMMs 29240
Date Sat Aug 17 00:49:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.9 1.2E-21 4E-26 139.6 9.2 130 2-135 79-213 (451)
2 3o7q_A L-fucose-proton symport 99.8 6.2E-20 2.1E-24 130.3 11.9 125 1-127 77-228 (438)
3 2gfp_A EMRD, multidrug resista 99.8 6.5E-21 2.2E-25 133.2 4.6 129 2-134 52-180 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.8 1.2E-19 4.2E-24 130.7 10.7 126 2-131 71-199 (491)
5 4gc0_A D-xylose-proton symport 99.8 1E-19 3.5E-24 131.0 6.4 132 2-134 72-225 (491)
6 2xut_A Proton/peptide symporte 99.8 5.4E-18 1.9E-22 123.1 11.8 122 2-127 71-197 (524)
7 2cfq_A Lactose permease; trans 99.6 2.5E-15 8.6E-20 106.7 8.3 128 3-134 277-405 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.5E-14 5.1E-19 102.9 7.2 126 2-129 305-434 (451)
9 4gc0_A D-xylose-proton symport 99.4 8.4E-13 2.9E-17 95.0 10.8 134 3-136 330-470 (491)
10 4aps_A DI-OR tripeptide H+ sym 99.4 2.2E-13 7.5E-18 98.1 7.3 128 3-133 337-476 (491)
11 3o7q_A L-fucose-proton symport 99.3 1E-11 3.4E-16 88.1 8.4 112 2-120 312-424 (438)
12 2cfq_A Lactose permease; trans 99.3 6.4E-14 2.2E-18 99.4 -3.0 118 2-124 60-183 (417)
13 2xut_A Proton/peptide symporte 99.2 2.6E-11 8.9E-16 88.0 6.2 117 16-132 374-506 (524)
14 2gfp_A EMRD, multidrug resista 98.6 2.1E-09 7E-14 74.9 -0.9 108 3-115 253-363 (375)
15 2g9p_A Antimicrobial peptide l 79.2 1.1 3.8E-05 17.6 1.3 14 4-17 2-15 (26)
16 2bzw_B BCL2-antagonist of cell 35.7 14 0.00048 14.9 0.7 13 3-15 2-14 (27)
17 1ldf_A Glycerol uptake facilit 31.1 99 0.0034 20.7 4.8 16 107-122 232-247 (281)
18 4ev6_A Magnesium transport pro 26.6 43 0.0015 23.0 2.5 23 105-127 309-331 (339)
19 1rh5_C Secbeta; protein transl 24.2 64 0.0022 15.6 2.2 20 11-30 27-46 (53)
20 1cmk_I CAMP-dependent protein 23.8 10 0.00035 15.5 -0.6 10 9-18 9-18 (26)
21 2iub_A CORA, divalent cation t 23.0 47 0.0016 23.0 2.1 22 105-126 333-354 (363)
22 2dw3_A Intrinsic membrane prot 21.7 1E+02 0.0034 16.3 5.3 27 106-132 31-57 (77)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.86 E-value=1.2e-21 Score=139.55 Aligned_cols=130 Identities=19% Similarity=0.300 Sum_probs=117.5
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhh----cccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF----AARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 77 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 77 (147)
++++|+++||+|||+++.++.++.+++.+++++ . ++++.+++.|++.|++.+...+...+++.|++|+++|++.
T Consensus 79 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 156 (451)
T 1pw4_A 79 KFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 156 (451)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHH
T ss_pred HHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHH
Confidence 468899999999999999999999999999988 7 8889999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy4740 78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYLFGILGVLWFVAWCFLCYNDPAS 135 (147)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (147)
+++.+...++|..++|.+++.+.+. .+ ||+.|++.+++.++..+...+..||+|++
T Consensus 157 ~~~~~~~~~~g~~~g~~~~~~l~~~--~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 157 VSVWNCAHNVGGGIPPLLFLLGMAW--FNDWHAALYMPAFCAILVALFAFAMMRDTPQS 213 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHH--TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence 9999999999999999999998877 67 99999999888877666666677765543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.83 E-value=6.2e-20 Score=130.33 Aligned_cols=125 Identities=15% Similarity=0.124 Sum_probs=108.5
Q ss_pred CCcchhhhhhhhcchHHHHHHHHHHHHHHHHh---hhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHH
Q psy4740 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLT---PFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKI 77 (147)
Q Consensus 1 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 77 (147)
+++++|+++||+|||+++.++.++.+++.+++ ... ++++.+++.|++.|++.+...+....+++|++|+++|++.
T Consensus 77 ~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 154 (438)
T 3o7q_A 77 IPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFR 154 (438)
T ss_dssp THHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred HHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHH
Confidence 35789999999999999999999999999988 666 8999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhcCCC------------------------hhHHHHHHHHHHHHHHHHHHh
Q psy4740 78 GSFVFAGNQIGTVFSSFLSGFLLKYTDGD------------------------WPEIFYLFGILGVLWFVAWCF 127 (147)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~ 127 (147)
+++.+...++|..++|.+++.+....... ||+.|++.+....+..+...+
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988332222 999998877776655444433
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.82 E-value=6.5e-21 Score=133.23 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=115.7
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
+++.|+++||+|||+++..+.++..++....... ++++.+++.|++.|++.+...+....++.|.+|+++|++.++..
T Consensus 52 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (375)
T 2gfp_A 52 QLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLL 129 (375)
T ss_dssp HTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHH
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHH
Confidence 5789999999999999999999999999998888 88999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+....+|..++|.+++.+.+. .+||+.|++.++..++..+...+..||+++
T Consensus 130 ~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 130 NMGILVSPLLAPLIGGLLDTM--WNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHhhHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 999999999999999999877 689999998888877665545555666543
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.81 E-value=1.2e-19 Score=130.73 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=111.4
Q ss_pred Ccchhhhhhh-hcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcc--hhHHH
Q psy4740 2 HIPGGLLAQK-FGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTE--RGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--r~~~~ 78 (147)
+++.|+++|| +|||+++..+.++.+++.+++... ++++.+++.|++.|++.+...+....+++|++|+++ |+.++
T Consensus 71 ~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 148 (491)
T 4aps_A 71 GTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGF 148 (491)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeee
Confidence 5688999999 899999999999999999998888 889999999999999999999999999999999988 77788
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccC
Q psy4740 79 SFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131 (147)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (147)
+.++...++|..++|.+++.+.+. .+|++.|++.++..++..+...+..++
T Consensus 149 ~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 149 SIFVFGINLGAFIAPLIVGAAQEA--AGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 889999999999999999999988 799999999877776655555444443
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.79 E-value=1e-19 Score=131.03 Aligned_cols=132 Identities=20% Similarity=0.300 Sum_probs=108.7
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcc----------------cccHHHHHHHHHHHhhccccCcccHHHHh
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA----------------RQSANWLIALRFFEGLGEGTTFPALNTLL 65 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 65 (147)
++++|+++||+|||+++.++.++..++.+++++.. .+++..+++.|++.|++.|...+....++
T Consensus 72 ~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i 151 (491)
T 4gc0_A 72 GALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYI 151 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999887421 27899999999999999999999999999
Q ss_pred hhhcCCcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcC------CChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 66 AQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTD------GDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 66 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+|..|+++|++..+..+.....|..+++.++.......+ ..||..+.+..+..++ .+...+..||+|+
T Consensus 152 ~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~ 225 (491)
T 4gc0_A 152 AELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLLYTVPESPR 225 (491)
T ss_dssp HTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHH
T ss_pred HhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChH
Confidence 999999999999999999999999999888877655321 3577777766666655 3444556677653
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.76 E-value=5.4e-18 Score=123.07 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=107.9
Q ss_pred Ccchhhhhhhh-cchHHHHHHHHHHHHHHHHhhhcccc-cHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 2 HIPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQ-SANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 2 ~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
+++.|+++||+ |||+++..+.++.+++.+++... + +++.+++.|++.|++.+...+...+++.|.+|+++|++..+
T Consensus 71 ~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 148 (524)
T 2xut_A 71 PLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK 148 (524)
T ss_dssp HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHH
Confidence 56889999999 99999999999999999988887 7 89999999999999999999999999999999999987666
Q ss_pred H---HHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHh
Q psy4740 80 F---VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCF 127 (147)
Q Consensus 80 ~---~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (147)
. .+...++|..++|.+++.+.+. .+|++.|++.++..++..+...+
T Consensus 149 ~~~~~~~~~~~g~~~g~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 149 AFDMFYFTINFGSFFASLSMPLLLKN--FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHHT--SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence 6 8889999999999999999887 69999999988877665554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.60 E-value=2.5e-15 Score=106.67 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=101.1
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHH-H
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF-V 81 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~ 81 (147)
++.|+++||+|||+.+..+..+.++........ ++.+.+++..++.+++.+...+....+++|.+|++.|+++.+. +
T Consensus 277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 354 (417)
T 2cfq_A 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCF 354 (417)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 567899999999999988888877776666555 5666666666667766655556667899999999999999999 5
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
+....+|..++|.+.+.+.+. .++...|.+.+++.++..+..+...+|+++
T Consensus 355 ~~~~~lg~~~gp~l~G~l~~~--~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 355 CFFKQLAMIFMSVLAGNMYES--IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp TTTHHHHHHHHTHHHHTHHHH--SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHhHHHHHhhhhHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 888889999999999999887 678888888888777766665555555433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.53 E-value=1.5e-14 Score=102.90 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=103.4
Q ss_pred Ccchhhhhhhh--cchHHHHHHHHHHH-HHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHH
Q psy4740 2 HIPGGLLAQKF--GGKHTLGFGILSTA-IFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIG 78 (147)
Q Consensus 2 ~~~~g~l~d~~--gr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (147)
.++.|++.||+ |||+.+..+..+.. ++..........+.+...+..++.|++.+...+....++.|.+|+++|+++.
T Consensus 305 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 384 (451)
T 1pw4_A 305 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 384 (451)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHH
Confidence 35689999999 99999888777766 5555555543236677777888889888888888889999999999999999
Q ss_pred HHHHhhhhh-HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q psy4740 79 SFVFAGNQI-GTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLC 129 (147)
Q Consensus 79 ~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (147)
++.+...++ |..++|.+.+.+.+. .+|+..|++.+++.++..+...+..
T Consensus 385 ~~~~~~~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 385 GFTGLFGYLGGSVAASAIVGYTVDF--FGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS--SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999998 6899999988888777665555443
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.45 E-value=8.4e-13 Score=95.00 Aligned_cols=134 Identities=19% Similarity=0.139 Sum_probs=93.1
Q ss_pred cchhhhhhhhcchHHHHHHHHHHHHHHHHhhhc--ccccHHHHHHHHHHH-hhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFA--ARQSANWLIALRFFE-GLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
++.+++.||+|||+.++.+.....++.+..+.. ...+....++...+. ........+....+.+|.+|++.|+++++
T Consensus 330 ~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g 409 (491)
T 4gc0_A 330 VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALA 409 (491)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHH
T ss_pred HHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHH
Confidence 467889999999999998887777766655433 112222222222222 22222334566789999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhc----CCChhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4740 80 FVFAGNQIGTVFSSFLSGFLLKYT----DGDWPEIFYLFGILGVLWFVAWCFLCYNDPASH 136 (147)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (147)
+.+....++..+++.+...+.+.. ..++...|++.+.+.++..+..+++.||++.++
T Consensus 410 ~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 410 IAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp HHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 999999999988887766554321 124556788888888888888888899987654
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.44 E-value=2.2e-13 Score=98.12 Aligned_cols=128 Identities=17% Similarity=0.191 Sum_probs=95.4
Q ss_pred cchhhhhhhhcchHHHH-----HHHHHHHHHHHHhhhcc-------cccHHHHHHHHHHHhhccccCcccHHHHhhhhcC
Q psy4740 3 IPGGLLAQKFGGKHTLG-----FGILSTAIFTLLTPFAA-------RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP 70 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~-----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 70 (147)
++.+++.||+|||+... .+.++.+++........ ..+.+...+..++.|++.+...+....++.|.+|
T Consensus 337 ~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 416 (491)
T 4aps_A 337 PFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP 416 (491)
T ss_dssp HHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 46789999999886544 66666666665554431 1256677788889999999989999999999999
Q ss_pred CcchhHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHhhccCCC
Q psy4740 71 PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDP 133 (147)
Q Consensus 71 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (147)
+++|+++.++.+...++|..+++.+.+.+.+. ++...|.+.+...++..+..++..++.+
T Consensus 417 ~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 417 KAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK---SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS---STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887655 6677788777777766666555555443
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.29 E-value=1e-11 Score=88.07 Aligned_cols=112 Identities=16% Similarity=0.136 Sum_probs=89.6
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHH
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFV 81 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 81 (147)
.++.|+++||+|||+.+..+.++..++.+..... ++.... +..++.|++.+..++....+..|.+|++ ++.+.++.
T Consensus 312 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 387 (438)
T 3o7q_A 312 RFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFI 387 (438)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--CHHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc--CCcHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHH
Confidence 3578999999999999999988888888777766 554443 3447888888888898999989999866 88888877
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHH
Q psy4740 82 FAGNQIGTVFSSFLSGFLLKYTDGD-WPEIFYLFGILGVL 120 (147)
Q Consensus 82 ~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 120 (147)
. ...+|..++|.+.+.+.+. .+ ++..|++.++..++
T Consensus 388 ~-~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 388 V-MTIIGGGIVTPVMGFVSDA--AGNIPTAELIPALCFAV 424 (438)
T ss_dssp H-HTTHHHHHHHHHHHHHHHH--HTSSGGGGHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHH
Confidence 6 5679999999999999988 45 88888876555444
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.29 E-value=6.4e-14 Score=99.42 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=75.4
Q ss_pred CcchhhhhhhhcchHHHHHHHHHHHHHHHHh---hhcccccH-HHHHHHHHHHhhccccCcccHHHHhhhhcCC--cchh
Q psy4740 2 HIPGGLLAQKFGGKHTLGFGILSTAIFTLLT---PFAARQSA-NWLIALRFFEGLGEGTTFPALNTLLAQWVPP--TERG 75 (147)
Q Consensus 2 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~ 75 (147)
++++|+++||+|||+++..+..+..+..... ... ... ......+.+.+...+..++.......++.++ ++|+
T Consensus 60 ~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 137 (417)
T 2cfq_A 60 QPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN 137 (417)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH--HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc
Confidence 5789999999999999998877665422111 111 111 0123344555555444443334444444433 4567
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q psy4740 76 KIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVA 124 (147)
Q Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (147)
...+......++|..++|.+++.+.+. +|+..|++.++..++..+.
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~~---~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHHH---CSHHHHTTTTTTTTTHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHH
Confidence 777888888899999999999998876 7999998776665443333
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.19 E-value=2.6e-11 Score=88.01 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-------cccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHHHHHhhhhhH
Q psy4740 16 HTLGFGILSTAIFTLLTPFAA-------RQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIG 88 (147)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 88 (147)
+.+..+.++.+++........ ..+.+.+++..++.|++.+...+....++.|..|+++|++++++.+...++|
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 453 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG 453 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHH
Confidence 456667777777776665531 1356677778889999999889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCh---------hHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 89 TVFSSFLSGFLLKYTDGDW---------PEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 89 ~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
..++|.+.+.+.+..+.+| +..|++.+.+.++..+..++..++.
T Consensus 454 ~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 454 NLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998876321123 3336666666666555555554443
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.65 E-value=2.1e-09 Score=74.90 Aligned_cols=108 Identities=17% Similarity=0.068 Sum_probs=76.8
Q ss_pred cchhhhhhhhcchHHHHHHHHH-HHHHHHHhhhc--ccccHHHHHHHHHHHhhccccCcccHHHHhhhhcCCcchhHHHH
Q psy4740 3 IPGGLLAQKFGGKHTLGFGILS-TAIFTLLTPFA--ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGS 79 (147)
Q Consensus 3 ~~~g~l~d~~gr~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (147)
++.+++.||++++ +..+... ...+....... ..++.+..++..++.|++.+...+....++.|..| ++|+++.+
T Consensus 253 ~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g 329 (375)
T 2gfp_A 253 WFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGA 329 (375)
T ss_dssp HHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHH
Confidence 4567788888762 2223222 22221111111 11355666677888899999999999999999998 89999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q psy4740 80 FVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFG 115 (147)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 115 (147)
+.+...++|..++|.+.+.+.+. .+++..+.+.+
T Consensus 330 ~~~~~~~~g~~~~~~~~g~l~~~--~~~~~~~~~~~ 363 (375)
T 2gfp_A 330 LVGGLQNIGSGVLASLSAMLPQT--GQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHCCSTTCTHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CcccHHHHHHH
Confidence 99999999999999999988776 56776666543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=79.23 E-value=1.1 Score=17.62 Aligned_cols=14 Identities=43% Similarity=0.460 Sum_probs=11.3
Q ss_pred chhhhhhhhcchHH
Q psy4740 4 PGGLLAQKFGGKHT 17 (147)
Q Consensus 4 ~~g~l~d~~gr~~~ 17 (147)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=35.67 E-value=14 Score=14.91 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=9.0
Q ss_pred cchhhhhhhhcch
Q psy4740 3 IPGGLLAQKFGGK 15 (147)
Q Consensus 3 ~~~g~l~d~~gr~ 15 (147)
++..|.+.|+||.
T Consensus 2 p~~~~~A~rYGRe 14 (27)
T 2bzw_B 2 PPNLWAAQRYGRE 14 (27)
T ss_dssp CGGGHHHHHHHHH
T ss_pred chhHHHHHHHhHH
Confidence 4556778888864
No 17
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=31.12 E-value=99 Score=20.67 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHH
Q psy4740 107 WPEIFYLFGILGVLWF 122 (147)
Q Consensus 107 ~~~~~~~~~~~~~~~~ 122 (147)
|.|.+++.-.+..+..
T Consensus 232 ~~WVy~vgPi~Ga~la 247 (281)
T 1ldf_A 232 YFLVPLFGPIVGAIVG 247 (281)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred eeeHHhHHHHHHHHHH
Confidence 5678887766655543
No 18
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=26.58 E-value=43 Score=22.96 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=12.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHh
Q psy4740 105 GDWPEIFYLFGILGVLWFVAWCF 127 (147)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~ 127 (147)
..|++.|++..++.++.++..++
T Consensus 309 l~~~~gy~~~l~~m~~~~~~~~~ 331 (339)
T 4ev6_A 309 ANNPQGFWLVMALMVVIIMIFVY 331 (339)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHH
Confidence 36777777655555544444333
No 19
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=24.18 E-value=64 Score=15.64 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=12.6
Q ss_pred hhcchHHHHHHHHHHHHHHH
Q psy4740 11 KFGGKHTLGFGILSTAIFTL 30 (147)
Q Consensus 11 ~~gr~~~~~~~~~~~~~~~~ 30 (147)
|.+|+.++..+.++.++..+
T Consensus 27 Ki~P~~Vl~~si~~i~~V~~ 46 (53)
T 1rh5_C 27 RVKPEHVIGVTVAFVIIEAI 46 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCeehhhhHHHHHHHHHH
Confidence 56778877776665544443
No 20
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=23.82 E-value=10 Score=15.47 Aligned_cols=10 Identities=10% Similarity=0.451 Sum_probs=7.2
Q ss_pred hhhhcchHHH
Q psy4740 9 AQKFGGKHTL 18 (147)
Q Consensus 9 ~d~~gr~~~~ 18 (147)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 5788888754
No 21
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=22.99 E-value=47 Score=23.04 Aligned_cols=22 Identities=9% Similarity=-0.102 Sum_probs=7.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q psy4740 105 GDWPEIFYLFGILGVLWFVAWC 126 (147)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~ 126 (147)
..|++.|++..++.++..+..+
T Consensus 333 l~~~~Gy~~~l~~m~~i~~~~~ 354 (363)
T 2iub_A 333 LRWKWGYPVVLAVMGVIAVIMV 354 (363)
T ss_dssp ------CHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHH
Confidence 3577776655555444443333
No 22
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=21.70 E-value=1e+02 Score=16.25 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=12.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhccCC
Q psy4740 106 DWPEIFYLFGILGVLWFVAWCFLCYND 132 (147)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
+|-.++.+...+.+++.-..-.++||+
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~ 57 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQ 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 455555554444444333333455553
Done!