RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4740
(147 letters)
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 119 bits (301), Expect = 7e-33
Identities = 51/146 (34%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPA 60
+ IP G LA K+ K ++G G+ +++ +++ P+AA ++ R +GL +G+ PA
Sbjct: 92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPA 151
Query: 61 LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
+ ++ +W PP ER ++ +G Q+GT +SG+L + G WP IFY+FGI+G
Sbjct: 152 THKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES-WGGWPMIFYVFGIVGCA 210
Query: 121 WFVAWCFLCYNDPASHPYISQREKEY 146
W + W +DP+ HP IS+ EK+Y
Sbjct: 211 WSLLWFVFPADDPSIHPCISKFEKKY 236
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 81.2 bits (201), Expect = 7e-19
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 5/147 (3%)
Query: 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPA 60
PGG L +FG + TL I+ +FT L FA + L LR G E FP
Sbjct: 45 GQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS--LYILRVLLGAAEAPFFPG 102
Query: 61 LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
+ ++A W P +ER S + +G + L G++L W F + G+LG++
Sbjct: 103 IILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL--IHFSWQWAFIIEGVLGII 160
Query: 121 WFVAWCFLCYNDPASHPYISQREKEYK 147
W V W DP E++Y
Sbjct: 161 WGVLW-LKFIPDPPQKAKWLTEEEKYI 186
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 79.0 bits (195), Expect = 3e-18
Identities = 46/143 (32%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
G L+ +FG + L G+L A+ LL FA+ S L+ LR +GLG G FPA
Sbjct: 50 PLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQGLGGGALFPAAA 107
Query: 63 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF 122
L+A W PP ERG+ + AG +G L G L W F + IL +L
Sbjct: 108 ALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASL--FGWRAAFLILAILALLAA 165
Query: 123 VAWCFLCYNDPASHPYISQREKE 145
V L P E+
Sbjct: 166 VLAALLLPRPPPESKRPKPAEEA 188
Score = 40.1 bits (94), Expect = 1e-04
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTL-LTPFAARQSANWLIALRFFEGLGEGTTFP 59
+ G L+ + G + L +L + L L + +S+ WL+ G G G FP
Sbjct: 253 GRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFP 312
Query: 60 ALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSS 93
ALN L++ P ERG +G
Sbjct: 313 ALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 74.7 bits (184), Expect = 1e-16
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
+ G L+ +FG + L G+L A+ +LL FA S L+ RF GLG G +PA
Sbjct: 52 LLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAA 109
Query: 63 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF 122
L+A+W PP ERG+ AG +G + L G L + W +F + ILG+L
Sbjct: 110 ALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES--LGWRWLFLILAILGLLLA 167
Query: 123 VAWCFL 128
+ FL
Sbjct: 168 LLLLFL 173
Score = 45.4 bits (108), Expect = 2e-06
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 5/127 (3%)
Query: 3 IPGGLLAQKFGGK-HTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
+ GGLL+ + G + L G+L A+ LL A S L+ G G G FPAL
Sbjct: 229 LLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP--SLALLLVALLLLGFGLGFAFPAL 286
Query: 62 NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
TL ++ PP RG +G L+G L G + +F + L +L
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL--LDTGGYGGVFLILAALALLA 344
Query: 122 FVAWCFL 128
+ L
Sbjct: 345 ALLLLLL 351
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 67.0 bits (164), Expect = 6e-14
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 5 GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL 64
G LA + G + L + IL ++FTLL A + L+ LRF GLG G P LN L
Sbjct: 72 FGPLADRIGRRRVLLWSILLFSVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNAL 129
Query: 65 LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGI--LGVLWF 122
++++ P RG +F G IG FL+G+L+ W +FY+ GI L +L
Sbjct: 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI--PVFGWRSLFYVGGIAPLLLLLL 187
Query: 123 VA 124
+
Sbjct: 188 LM 189
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 63.2 bits (154), Expect = 2e-12
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query: 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
G ++ + + L G++ AI L F S + AL G+ +G +P
Sbjct: 48 FVMGSVSDRSNPRVFLPIGLILCAIVNLF--FGFSTSLWVMAALWALNGIFQGMGWPPCG 105
Query: 63 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWF 122
+ +W +ERG SF + +G L F + W +F + GI+ ++
Sbjct: 106 RTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGIIAIIVS 164
Query: 123 VAWCFLCYNDPAS 135
+ L + P S
Sbjct: 165 LICFLLLRDSPQS 177
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 55.7 bits (135), Expect = 6e-10
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 5 GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL 64
GG LA + G K L + +F+L T A + L+ R G+G G P L L
Sbjct: 70 GGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPS--LLVARLLTGVGLGGALPNLIAL 127
Query: 65 LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGI 116
++ V P RG S ++ G G +S + +L D W IFY+ G+
Sbjct: 128 TSEAVGPRLRGTAVSLMYCGVPFGGALASVIG--VLAAGDAAWRHIFYVGGV 177
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 45.7 bits (109), Expect = 5e-07
Identities = 40/127 (31%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLT-PFAARQSANWLIALRFFEGLGEGTTFPAL 61
GLL +FG K L ++ IF L T FA + LI RF +G G A
Sbjct: 16 PLSGLLTDRFGRKPVL---LVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAG 72
Query: 62 NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLW 121
L+A PP ERG + AG +G + L G L ++ W F IL +
Sbjct: 73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL--GWRAPFLFLAILALAA 130
Query: 122 FVAWCFL 128
F+ FL
Sbjct: 131 FILLAFL 137
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 46.5 bits (111), Expect = 9e-07
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 3/126 (2%)
Query: 5 GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL 64
G L +FG K +L G + I LL FA +S LI R GLG G +
Sbjct: 66 AGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMY 125
Query: 65 LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD--WPEIFYLFGILGVLWF 122
+++ P RG +GS G G + + + G L W L + +L
Sbjct: 126 ISEIAPKKLRGALGSLYQLGITFGILV-AAIIGLGLNKYSNSDGWRIPLGLQFVPAILLL 184
Query: 123 VAWCFL 128
+ FL
Sbjct: 185 IGLLFL 190
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 45.8 bits (109), Expect = 2e-06
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLL 65
G L+ +FG K L L TA+ +LT F+ + + R G+G G + L
Sbjct: 148 GYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT--VFLVFRLLVGMGIGGIWVQAVVLN 205
Query: 66 AQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW 125
+++P +R +G+ + +G V ++ F+ DW + + L+F+
Sbjct: 206 TEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-----DWRWLQLAVSLPTFLFFLLS 260
Query: 126 CFLC 129
F+
Sbjct: 261 WFVP 264
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 44.6 bits (106), Expect = 4e-06
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 2/130 (1%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLL 65
G+L+ + ++ + FG++ +AI +L F S L G +G +P +
Sbjct: 85 GVLSDRSNPRYFMAFGLILSAIVNIL--FGFSPSLFLFAVLWVLNGWFQGMGWPPCARTI 142
Query: 66 AQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW 125
W ERG S + IG + ++ G W FY GI+ ++ +
Sbjct: 143 THWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALIL 202
Query: 126 CFLCYNDPAS 135
FL + P S
Sbjct: 203 LFLLRDRPQS 212
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 43.1 bits (102), Expect = 2e-05
Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 15/147 (10%)
Query: 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPA 60
+ I G L KFG ++T +L AI L A QS + L+ LR F G+ G +F +
Sbjct: 53 LRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL-AVQSYSVLLLLRLFIGIA-GGSFAS 110
Query: 61 LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSF----LSGFLLK------YTDGDWPEI 110
++ + P +G +G + F + G L+ + W +
Sbjct: 111 CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFV 170
Query: 111 FYLFGIL---GVLWFVAWCFLCYNDPA 134
GIL +L F PA
Sbjct: 171 IVPAGILLLPALLIFFVGADTPPGKPA 197
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 39.6 bits (93), Expect = 2e-04
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 43 LIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 102
L+ R +G G + LA++ PP +RG GSF G +G + ++ L+ LL Y
Sbjct: 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAA-LTVLLLSY 157
Query: 103 TDGD 106
GD
Sbjct: 158 LLGD 161
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 39.6 bits (93), Expect = 2e-04
Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 4/137 (2%)
Query: 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANW-LIALRFFEGLGEGTTFPAL 61
+P G L +FGG+ +L I L FA + W L+ + GL G +F
Sbjct: 67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVG 125
Query: 62 NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK-YTDGDWPEIFYLFGILGVL 120
+ + P ++G AGN +G + ++ + + W + ++ + +
Sbjct: 126 MPNASFFFPKEKQGLALGIAGAGN-LGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184
Query: 121 WFVAWCFLCYNDPASHP 137
V + P
Sbjct: 185 AAVLAWLGMNDVPEHRA 201
Score = 35.3 bits (82), Expect = 0.007
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 21/131 (16%)
Query: 5 GGLLAQKFGGKHTLGF----GILSTAIFTLLTPFAARQSANWL-----IALRFFEGLGEG 55
GG L+ + GG+ L+ A+ +L + + +AL F GLG G
Sbjct: 274 GGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNG 333
Query: 56 TTFPALNTLLAQWVP---PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFY 112
+ F + +P P E G + V A +G F G L T G + F
Sbjct: 334 SVF--------KMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT-GSYTGAFM 384
Query: 113 LFGILGVLWFV 123
L ++ V
Sbjct: 385 LLLAFYLVALV 395
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 38.5 bits (90), Expect = 5e-04
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR-QSANWLIALRFFEGLGEGTTFPALNTL 64
G LA++FG + ++ST FTL + + +I R +G G G P +
Sbjct: 58 GWLAKRFGTRRLF---LISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFST 114
Query: 65 LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFV- 123
L PP +RG+ + + L G++++ W IF + +G++ V
Sbjct: 115 LLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY--HWRWIFLINVPIGIIVVVV 172
Query: 124 AWCFLCYNDPASH 136
A+ L + PA+
Sbjct: 173 AFFILPRDKPAAS 185
>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease. This protein is
a part of the Major Facilitator Superfamily (Pfam family
pfam07690). Member of this family are found in a number
of proteobacterial genomes, but only in the context of
having genes for 4-hydroxyphenylacetate (4-HPA)
degradation. The protein is characterized by Prieto, et
al. (PMID:9315705) as 4-hydroxyphenylacetate permease in
E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are
shown to competitively inhibit 4-HPA transport and
therefore also interact specificially.
Length = 412
Score = 36.9 bits (85), Expect = 0.002
Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 8/148 (5%)
Query: 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
IP ++ G + + ++ I + T FA L LR G+ E P +
Sbjct: 61 IPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT--GPESLYLLRILVGIAEAGFLPGIL 118
Query: 63 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDG-----DWPEIFYLFGIL 117
L W P R + + + LSG++L DG W +F L G
Sbjct: 119 LYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL-DGLMALKGWQWLFLLEGFP 177
Query: 118 GVLWFVAWCFLCYNDPASHPYISQREKE 145
V+ V F + P ++ + +K+
Sbjct: 178 SVILGVMTWFWLDDSPDKAKWLDEEDKK 205
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 35.8 bits (83), Expect = 0.004
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 5 GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAAR--QSANWLIALRFFEGLGEGTTFPALN 62
G +A + G K G A+F + + + S+ +L RF +G+G G +
Sbjct: 58 AGKIADRSGRKPVAIPG---AALFIIASLLCSLAETSSLFLAG-RFLQGIGAGCCYVVAF 113
Query: 63 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFL--LKYTDGDWPEIFYLFGILGVL 120
+L + R K+ S + I V + L G L LK+ W +FY +G+L
Sbjct: 114 AILRDTLDDRRRAKVLSLLNGITCIIPVLAPVL-GHLIMLKF---PWQSLFYTMAAMGIL 169
Query: 121 WFV 123
+
Sbjct: 170 VLL 172
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 34.9 bits (81), Expect = 0.009
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 5/139 (3%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLL 65
LL + + L + + LL+ A S L+ R GL G + L
Sbjct: 69 ALLTGRLERRRLLLGLLALFIVSNLLSALA--PSFAVLLLARALAGLAHGVFWSIAAALA 126
Query: 66 AQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL-WFVA 124
A+ VPP +RG+ + VF G + TV L FL + W F +L +L +
Sbjct: 127 ARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF--GWRATFLAIAVLALLALLLL 184
Query: 125 WCFLCYNDPASHPYISQRE 143
W L ++ + R
Sbjct: 185 WKLLPPSEISGSLPGPLRT 203
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 34.7 bits (78), Expect = 0.011
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
Query: 3 IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALN 62
+ G L ++G + L G+L + TLL A L+ LR +GLG G P +
Sbjct: 57 LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVAS 116
Query: 63 TLLAQWVPPTER--GKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
LL++W P +G +G L+G LL W F L +LG+L
Sbjct: 117 ALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176
Query: 121 WFVAWCFL 128
+ L
Sbjct: 177 LLILVLLL 184
>gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional.
Length = 471
Score = 34.3 bits (79), Expect = 0.015
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 6 GLLAQKFGGKHTLGFGILSTAI--FTLLTPFAARQSA-NWLIALRFFEGLGEGTTFPALN 62
G LA + G ++ I TAI FTL + F A N L+ R +G+G P
Sbjct: 66 GWLADRVGVRN-----IFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGR 120
Query: 63 TLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYL---FGILGV 119
+ + VP + +FV Q+G + L G L++Y W IF + GI+G
Sbjct: 121 LTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHW--IFLINIPVGIIGA 178
Query: 120 L 120
+
Sbjct: 179 I 179
Score = 28.9 bits (65), Expect = 0.97
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 11 KFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIAL-RFFEGLGEGTTFPALNTL 64
+FG + L L A+ +LL A +L+ F +G+ T F ++NTL
Sbjct: 323 RFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTL 377
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 34.1 bits (79), Expect = 0.017
Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 13/123 (10%)
Query: 5 GGLLAQKFGGKH----TLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPA 60
G LLA + G+H + G L A+ L P A S ++ L F G G
Sbjct: 285 GSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--PSLASVLVLFFLFGFSAGLFIVP 342
Query: 61 LNTLLAQWVPPTERGKIGSFVFAGN---QIGTVFSSFLSGFLLKYTDGDWPEIFYLFGIL 117
LN L+ P E GK+ A N Q + L +FYL ++
Sbjct: 343 LNALIQFRAPEKELGKV----LAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398
Query: 118 GVL 120
++
Sbjct: 399 TLI 401
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 33.7 bits (77), Expect = 0.021
Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLL 65
GL ++G + + I+ + TL FA + R G+G G + + +
Sbjct: 68 GLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYIT--MFIARLVIGIGMGGEYGSSAAYV 125
Query: 66 AQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAW 125
+ P R K + +G +G V ++ + ++ W +F+ IL +++ +
Sbjct: 126 IESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF-ISILPIIFALWL 184
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 33.5 bits (77), Expect = 0.026
Identities = 34/128 (26%), Positives = 46/128 (35%), Gaps = 6/128 (4%)
Query: 5 GGLLAQKFGGKHTLGFGIL---STAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
G L+ +FG K +L L AI L FA S LI R G+G G +
Sbjct: 91 AGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA--LSVEMLIVGRVLLGIGVGIASALV 148
Query: 62 NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFL-SGFLLKYTDGDWPEIFYLFGILGVL 120
L++ P RG + S G + + SG + W L I L
Sbjct: 149 PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL 208
Query: 121 WFVAWCFL 128
F+ FL
Sbjct: 209 LFLGLFFL 216
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 33.0 bits (76), Expect = 0.040
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 3 IPGGLLAQKF-GGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPAL 61
I GG LA + G + T+ G + AI L+ ++ L +G G P +
Sbjct: 79 IIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNI 138
Query: 62 NTLLAQWVPPTE---RGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFG--- 115
++LL + P + G F N IG++ + ++G L + W F L
Sbjct: 139 SSLLGELYPKDDPRRDGGFTLFYMGIN-IGSLIAPIITGLLAI--NYGWHVGFGLAAVGM 195
Query: 116 ILGVLWFVA 124
I+G++ F+
Sbjct: 196 IIGLVIFLL 204
Score = 26.1 bits (58), Expect = 8.3
Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 12/117 (10%)
Query: 15 KHTLGFGILSTAIFTLLTPFAARQ-------SANWLIALRFFEGLGEGTTFPALNTLLAQ 67
K LG + F +L S WL+ + GE P +++ +
Sbjct: 363 KFALGLILAG-LGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTK 421
Query: 68 WVPPTERGKIGSF----VFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
PP + I + V AG +G + + YT +F G++ ++
Sbjct: 422 LAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIV 478
>gnl|CDD|184957 PRK14995, PRK14995, methyl viologen resistance protein SmvA;
Provisional.
Length = 495
Score = 32.4 bits (74), Expect = 0.065
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 1 MHIPGGLLAQKFGGKHTLGFGILSTAIFTLLTPFAA-RQSANWLIALRFFEGLGEGTTFP 59
M +P G L + G K L +L +F L + AA +A+WLIA R +G P
Sbjct: 57 MVLPMGALGDRIGFKRLL---MLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVP 113
Query: 60 A-LNTLLAQWVPPTERG-KIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIF 111
A L + A + +R +G + G+ G F + G LL++ W +F
Sbjct: 114 ATLAGIRATFTEEKQRNMALGVWAAVGSG-GAAFGPLVGGILLEHF--YWGSVF 164
>gnl|CDD|183255 PRK11646, PRK11646, multidrug resistance protein MdtH; Provisional.
Length = 400
Score = 32.0 bits (73), Expect = 0.095
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 3 IPGGLLAQKFGGKHTLGFGILSTAI-FTLLTPFAARQSANWLIALR-FFEGLGEGTTF-P 59
I GG +A +FG K + G+L A F + A WL+ L GLG GT F P
Sbjct: 64 IFGGAIADRFGAKPMIVTGMLMRAAGFATM----AIAHEPWLLWLSCILSGLG-GTLFDP 118
Query: 60 ALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 102
L+ + + P +RG+ S + + G V + L +LL+Y
Sbjct: 119 PRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY 161
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 31.0 bits (71), Expect = 0.20
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 8 LAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLA- 66
LA++FG K T G+L AI +L F S + L G+G G +LA
Sbjct: 280 LAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLAD 339
Query: 67 -----QWVPPTER-GKIGSFVFAGNQIGTVFSSFLSGFLL 100
+W R G S +++G + G LL
Sbjct: 340 VVDYGEWKTGKRREGITFSLYSFADKLGGALGGAIVGLLL 379
Score = 27.6 bits (62), Expect = 2.7
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 71 PTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD-----WPEIFYLFGILGVLWFVAW 125
P ER + S+ G IG + + ++ L+ G + + IL V+ F+
Sbjct: 132 PKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGGNGAKGYFLAALIIAILAVVGFLIC 191
Query: 126 CF 127
Sbjct: 192 FA 193
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 30.7 bits (70), Expect = 0.25
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 16/121 (13%)
Query: 17 TLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVP-----P 71
+ F I++ +F F+ + + G + +N P P
Sbjct: 90 AIPFAIVAVLLFIT-PDFSMTGKLIYA----LVTYMLLGLGYTLVNIPYGALGPEITQDP 144
Query: 72 TERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD-----WPEIFYLFGILGVLWFVAWC 126
ER + S+ +G + + L L+K G + + G++GV+ +C
Sbjct: 145 QERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILL-LFC 203
Query: 127 F 127
F
Sbjct: 204 F 204
Score = 26.1 bits (58), Expect = 8.6
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 8 LAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFP 59
L +KFG K G+L A+ LL F S ++ G+G G P
Sbjct: 295 LVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 29.9 bits (67), Expect = 0.50
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLL 65
GLLA KFG K + + I++ ++ T L+ A+ L RF G+G + +T
Sbjct: 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYA 131
Query: 66 AQWVPPTERGKIGSFVFAGNQIGTVFSS-FLSGFLLKYTDGDWPEIFY--LFGILGVLW 121
+ P + K +F+ +G IG + ++ F+ F Y W F+ L +L V++
Sbjct: 132 VESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY---GWRAAFFVGLLPVLLVIY 187
>gnl|CDD|237854 PRK14898, PRK14898, DNA-directed RNA polymerase subunit A'';
Provisional.
Length = 858
Score = 29.5 bits (66), Expect = 0.61
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 59 PALNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGD 106
L+ L + KI F F N F+ G L Y DGD
Sbjct: 307 TVLSDFLRNFCTDDGEKKIPDFAFGAN------KEFVRGLLQGYFDGD 348
>gnl|CDD|184667 PRK14416, PRK14416, membrane protein; Provisional.
Length = 200
Score = 29.1 bits (65), Expect = 0.78
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 26 AIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVF 82
A + +LT FAA NW + L F G G G F A+ LL + P + G + VF
Sbjct: 68 AQWVILTGFAAVIGHNWSVWLDFKGGKGLGPAFGAMLFLLPVYGLPQQLGILALLVF 124
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 29.1 bits (66), Expect = 0.86
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLG 53
G L+ + G + + G+ + L QS LRF +G+G
Sbjct: 69 GPLSDRIGRRPVMLAGVAFFILTCLAI--LLAQSIEQFTLLRFLQGIG 114
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 29.1 bits (65), Expect = 0.87
Identities = 21/61 (34%), Positives = 28/61 (45%)
Query: 30 LLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFAGNQIGT 89
LL P + Q+ L LRF G +G PA+ TLL G+I S+ + IG
Sbjct: 301 LLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGN 360
Query: 90 V 90
V
Sbjct: 361 V 361
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 29.2 bits (65), Expect = 0.91
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLL 65
G LA K G K L + F + F Q + + R G G G P + +
Sbjct: 223 GGLADKLGRKQCLLICLSVNGFFAFFSSFV--QGYGFFLFCRLLSGFGIGGAIPIVFSYF 280
Query: 66 AQWVPPTERGKIGSFVFAGNQIGTVFSSFLS 96
A+++ +RG+ S++ IG ++++ ++
Sbjct: 281 AEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 28.9 bits (65), Expect = 1.0
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTLL 65
G L+ ++G + L G+ A+ +L + + L+ LRF + G L+
Sbjct: 61 GPLSDRYGRRPVLLLGLFIFALSSLGLALS--NNIETLLVLRFVQAFGASAGSVISQALV 118
Query: 66 AQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
P E +I S + + + L G++L + W IF + G+L
Sbjct: 119 RDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL--SWHAIFAFLSLAGIL 171
>gnl|CDD|183266 PRK11663, PRK11663, regulatory protein UhpC; Provisional.
Length = 434
Score = 28.5 bits (64), Expect = 1.2
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 19/131 (14%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIAL-----RFFEGLGEGTTFPA 60
G+++ + ++ +G G+++T I +L F+ S+ W AL FF+G G +P
Sbjct: 79 GIVSDRSNARYFMGIGLIATGIINILFGFS---SSLWAFALLWVLNAFFQGWG----WPV 131
Query: 61 LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFL-LKYTDGDWPEIFYLFGILGV 119
LL W TERG + + +G + G + L Y W + GI+ +
Sbjct: 132 CAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG---WRYGMMIAGIIAI 188
Query: 120 LWFVAWCFLCY 130
+ FLC+
Sbjct: 189 V---VGLFLCW 196
>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily
[General function prediction only].
Length = 438
Score = 28.4 bits (64), Expect = 1.5
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 5 GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL 64
G L ++FG K L G++ +I L F + W++ L G G + +
Sbjct: 308 AGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLV--GTSLGGAQASSRSY 365
Query: 65 LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYT 103
LA+ VP + G+ + + FL + + T
Sbjct: 366 LARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT 404
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 28.2 bits (63), Expect = 1.7
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 4/119 (3%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSA----NWLIALRFFEGLGEGTTFPAL 61
G LA K G K G ++ I T+ + + S L RF+ G+G G +P
Sbjct: 77 GWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLS 136
Query: 62 NTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
+ +++ RG + + VFA G + + ++ +L G
Sbjct: 137 AIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSC 195
>gnl|CDD|221950 pfam13163, DUF3999, Protein of unknown function (DUF3999). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are typically between 440 and 470 amino
acids in length. There is a single completely conserved
residue D that may be functionally important.
Length = 348
Score = 28.1 bits (63), Expect = 1.8
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 26 AIFTLLTPFAARQSANW--LIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA 83
A + L P A +A L +R F G G P L+ L W P + G+ V A
Sbjct: 17 AWYRLTLPLAVYAAARRADLGDVRVFNG--AGEPVPPLDALRLDWPDPEQNGQARVSVEA 74
Query: 84 GN 85
+
Sbjct: 75 SD 76
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 27.9 bits (63), Expect = 2.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLG 53
G L+ ++G K L G+ A+ +L + +SA L+ LRF + +G
Sbjct: 62 GPLSDRYGRKPVLLAGLSLFALGSLGMLWV--ESAAQLLVLRFVQAVG 107
>gnl|CDD|219571 pfam07779, Cas1_AcylT, 10 TM Acyl Transferase domain found in
Cas1p. Cas1p protein of Cryptococcus neoformans is
required for the synthesis of O-acetylated
glucuronoxylomannans, a consitutent of the capsule, and
is critical for its virulence. The multi TM domain of
the Cas1p was unified with the 10 TM Sugar
Acyltransferase superfamily. This superfamily is
comprised of members from the OatA, MdoC, OpgC, NolL and
GumG families in addition to the Cas1p family. The Cas1p
protein has a N terminal PC-Esterase domain with the
opposing Acyl esterase activity.
Length = 496
Score = 27.8 bits (62), Expect = 2.2
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 113 LFGILGVLWFVAWCFLCYNDPAS---HPYIS 140
L +LG+ + A+ LC + HPYIS
Sbjct: 359 LGSVLGLGTYFAFELLCASKFECNEIHPYIS 389
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 27.8 bits (62), Expect = 2.4
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 5 GGLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTFPALNTL 64
GGLLA KFG + G + + A +A +L G G +
Sbjct: 58 GGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY--GLASAGVGIAYGIALNT 115
Query: 65 LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLK 101
+W P +RG + G +G+ S L ++
Sbjct: 116 AVKWF-PDKRGLASGIIIGGYGLGSFILSPLITSVIN 151
>gnl|CDD|179614 PRK03633, PRK03633, putative MFS family transporter protein;
Provisional.
Length = 381
Score = 27.7 bits (62), Expect = 2.4
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 61 LNTLLAQWV-----PPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKY 102
LNTL+ W+ P + G + S F GN +GT+ L+G+++K
Sbjct: 25 LNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTL----LAGYVIKR 67
>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional.
Length = 390
Score = 27.5 bits (62), Expect = 2.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 3 IPGGLLAQKFGGKHTLGFGILSTAI--FTLLTPFAARQSANWLIALRFFEGLG 53
I G +L + G +H GF +++ A+ LL A S L L F G+
Sbjct: 255 IIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIA 307
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 27.5 bits (61), Expect = 3.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 113 LFGILGVLWFVAWCFLCYNDP 133
LF I+ V+ +A+ L P
Sbjct: 172 LFAIIAVMGLIAFVGLLLAMP 192
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 27.2 bits (61), Expect = 3.4
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPF-AARQSANWLIALRFFEGLGEGTTFPALNTL 64
G +A FG K + G L +F L A Q+ + LI +RF GL +N L
Sbjct: 47 GPMADSFGRKPVILGGTL---VFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINAL 103
Query: 65 LAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
+ P E ++ SFV I + + + G+LL + W IF++ + +L
Sbjct: 104 MRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF--SWHAIFWVLALAAIL 157
>gnl|CDD|224316 COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].
Length = 289
Score = 27.0 bits (60), Expect = 3.5
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 91 FSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYN 131
+ + Y G W ++G + L V C N
Sbjct: 168 LMQIVLPLFIGYALGGWL--GLIWGGVQRLVLVQHATWCVN 206
>gnl|CDD|191110 pfam04844, Ovate, Transcriptional repressor, ovate. This is a
family of transcriptional repressors. In plants, these
proteins are important regulators of growth and
development.
Length = 60
Score = 25.2 bits (56), Expect = 3.7
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 126 CFLCYNDPASHPYI 139
C+L N H I
Sbjct: 33 CYLSLNAKEHHRAI 46
>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl
glycosylphosphotransferase. Members of this family are
generally found near other genes involved in the
biosynthesis of a variety of exopolysaccharides. These
proteins consist of two fused domains, an N-terminal
hydrophobic domain of generally low conservation and a
highly conserved C-terminal sugar transferase domain
(pfam02397). Characterized and partially characterized
members of this subfamily include Salmonella WbaP
(originally RfbP) , E. coli WcaJ , Methylobacillus EpsB,
Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B
Streptococcus CpsE (originally CpsD), and Streptococcus
suis Cps2E. Each of these is believed to act in
transferring the sugar from, for instance, UDP-glucose
or UDP-galactose, to a lipid carrier such as
undecaprenyl phosphate as the first (priming) step in
the synthesis of an oligosaccharide "block". This
function is encoded in the C-terminal domain. The
liposaccharide is believed to be subsequently
transferred through a "flippase" function from the
cytoplasmic to the periplasmic face of the inner
membrane by the N-terminal domain. Certain closely
related transferase enzymes such as Sinorhizobium ExoY
and Lactococcus EpsD lack the N-terminal domain and are
not found by this model.
Length = 445
Score = 27.2 bits (61), Expect = 4.2
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 86 QIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCY 130
+ + S L FLL+ P FY +L +L F
Sbjct: 3 DLLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAAS 47
>gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.
Length = 854
Score = 26.6 bits (60), Expect = 5.8
Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 9/22 (40%)
Query: 60 ALNTLLAQWVPPTERGKIGSFV 81
AL LLAQ IGSFV
Sbjct: 628 ALIVLLAQ---------IGSFV 640
>gnl|CDD|118809 pfam10285, Luciferase_cat, Luciferase catalytic domain. This
domain is the catalytic domain of dinoflagellate
luciferase. Luciferase is involved in catalyzing the
light emitting reaction in bioluminescence. The
structure of this domain has been solved. The core part
of the domain is a 10 stranded beta barrel that is
structurally similar to lipocalins and FABP.
Length = 296
Score = 26.1 bits (57), Expect = 7.8
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 36 ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80
AR W F+E L G LL WV P E KIG F
Sbjct: 148 ARAKRTWKSGHYFYEPLVSG------GNLLGVWVLPEEYRKIGFF 186
>gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional.
Length = 476
Score = 26.0 bits (58), Expect = 8.6
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 6 GLLAQKFGGKHTLGFGILSTAIFTLLTPFAARQSANWLIALRFFEGLGEGTTF 58
G + +G ++ F ++ TA SA IA+RFF G TF
Sbjct: 92 GPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--SSATGFIAVRFFIGFS-LATF 141
>gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter. This model
describes a very hydrophobic protein, predicted to span
the membrane at least 8 times. The two members confirmed
experimentally as glycerol-3-phosphate transporters,
from E. coli and B. subtilis, share more than 50 % amino
acid identity. Proteins of the hexose phosphate and
phosphoglycerate transport systems are also quite
similar [Transport and binding proteins, Other].
Length = 438
Score = 26.0 bits (57), Expect = 9.6
Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 5/121 (4%)
Query: 18 LGFGILSTAIFTLLTPFA--ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERG 75
L G++ +A LL F A S + L F G +G +P + W +ERG
Sbjct: 94 LPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERG 153
Query: 76 KIGSFVFAGNQIGTVFSSFLSGFLLKYTD-GDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134
I S + IG L LL DW Y I ++ + + + P
Sbjct: 154 TIVSIWNCAHNIGGGIPPLL--VLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQ 211
Query: 135 S 135
S
Sbjct: 212 S 212
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.145 0.481
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,988,277
Number of extensions: 752540
Number of successful extensions: 1377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1337
Number of HSP's successfully gapped: 161
Length of query: 147
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 59
Effective length of database: 7,034,450
Effective search space: 415032550
Effective search space used: 415032550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.5 bits)