RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4740
         (147 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 47.4 bits (111), Expect = 1e-07
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 3   IPGGLLAQKFGGKHTLGFGILSTAIFTLLTPF--AARQSANWLIALRFFEGLGEGTTFPA 60
              G ++ +   +  L  G++  A   L   F   A  S   +  L F  G  +G  +P 
Sbjct: 77  FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP 136

Query: 61  LNTLLAQWVPPTERGKIGSFVFAGNQIGTVFSSFLSGFLLKYTDGDWPEIFYLFGILGVL 120
               +  W    ERG I S     + +G      L    + + +     ++       ++
Sbjct: 137 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILV 196

Query: 121 WFVAWCFL 128
              A+  +
Sbjct: 197 ALFAFAMM 204


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 35.9 bits (81), Expect = 0.001
 Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 41  NWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSFVFA-GNQIGTVFSSFLSGFL 99
             ++ L+                 +           I    F    Q+  +F S L+G +
Sbjct: 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372

Query: 100 LKYTDGDWPEIFYLFGILGVLWFVAWCFL 128
            +     +   + + G++ + + +   F 
Sbjct: 373 YESI--GFQGAYLVLGLVALGFTLISVFT 399


>d1vpra1 b.60.1.7 (A:868-1218) Dinoflagellate luciferase
           {Lingulodinium polyedrum [TaxId: 160621]}
          Length = 351

 Score = 25.7 bits (56), Expect = 2.6
 Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 6/45 (13%)

Query: 36  ARQSANWLIALRFFEGLGEGTTFPALNTLLAQWVPPTERGKIGSF 80
           AR    W     F+E L  G        LL  WV P E  KIG F
Sbjct: 224 ARAKRTWKSGHYFYEPLVSG------GNLLGVWVLPEEYRKIGFF 262


>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 243

 Score = 23.8 bits (51), Expect = 9.7
 Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 8/68 (11%)

Query: 83  AGNQIGTVFSSFLS--------GFLLKYTDGDWPEIFYLFGILGVLWFVAWCFLCYNDPA 134
            GNQIG  F   +S        G     +D     I   +       +V    L   +P 
Sbjct: 12  CGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPG 71

Query: 135 SHPYISQR 142
           +   +   
Sbjct: 72  TMDSVRSG 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.145    0.481 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 583,570
Number of extensions: 25540
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 7
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (22.8 bits)