BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4741
(62 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 60.5 bits (145), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 1 MGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAI 58
MG+QW GM LM FR +I D +P GL + +++ S D +TFDDI++SFV++
Sbjct: 501 MGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSL 558
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 1 MGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAI 58
MG+QW GM LM FR +I D +P GL + +++ S D +TFDDI++SFV++
Sbjct: 101 MGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSL 158
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 1 MGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAI 58
MG+QW GM LM FR +I D +P GL + +++ S D +TFDDI++SFV++
Sbjct: 101 MGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSL 158
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 1 MGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVT 60
MG+QW GM LM FR +I D+ +PLGL + ++ S D DDI++SFV++ +
Sbjct: 499 MGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVLDDIVSSFVSLTS 558
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 29.6 bits (65), Expect = 0.48, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 2 GSQWPGMARELMWFAP-FRQAIFECDRVYRPL 32
GSQW GM EL+ +P F I CD P+
Sbjct: 542 GSQWAGMGAELLSSSPVFAGKIRACDESMAPM 573
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 2 GSQWPGMARELMWFAP-FRQAIFECDRVYRP 31
G+QW G AR+L+ + F +I +C+R P
Sbjct: 561 GAQWQGXARDLLRESQVFADSIRDCERALAP 591
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.143 0.482
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,954,788
Number of Sequences: 62578
Number of extensions: 62621
Number of successful extensions: 154
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 6
length of query: 62
length of database: 14,973,337
effective HSP length: 33
effective length of query: 29
effective length of database: 12,908,263
effective search space: 374339627
effective search space used: 374339627
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)