Query psy4741
Match_columns 62
No_of_seqs 186 out of 1193
Neff 8.9
Searched_HMMs 29240
Date Sat Aug 17 00:50:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h1y_A Malonyl coenzyme A-acyl 99.8 1.2E-19 4.1E-24 109.6 3.9 58 1-62 22-80 (321)
2 3ptw_A Malonyl COA-acyl carrie 99.8 1.9E-19 6.5E-24 109.2 4.0 59 1-62 11-70 (336)
3 3tzy_A Polyketide synthase PKS 99.8 1.5E-19 5E-24 114.1 2.9 60 1-62 148-209 (491)
4 3im9_A MCAT, MCT, malonyl COA- 99.7 3.7E-19 1.3E-23 106.9 2.1 59 1-62 19-78 (316)
5 3ezo_A Malonyl COA-acyl carrie 99.7 1.5E-19 5.1E-24 108.9 0.1 59 1-62 18-76 (318)
6 3tqe_A Malonyl-COA-[acyl-carri 99.7 3.1E-19 1E-23 107.3 1.4 59 1-62 15-74 (316)
7 1mla_A Malonyl-coenzyme A acyl 99.7 3.2E-19 1.1E-23 107.1 1.4 59 1-62 11-70 (309)
8 3k89_A Malonyl COA-ACP transac 99.7 3.9E-19 1.3E-23 106.8 0.9 59 1-62 13-72 (314)
9 3qat_A Malonyl COA-acyl carrie 99.7 5.2E-19 1.8E-23 106.4 1.4 59 1-62 14-73 (318)
10 3im8_A Malonyl acyl carrier pr 99.7 4.6E-19 1.6E-23 106.3 0.8 58 1-62 11-69 (307)
11 1nm2_A Malonyl COA:acyl carrie 99.7 1.1E-18 3.6E-23 105.2 1.4 58 1-62 10-68 (317)
12 2qc3_A MCT, malonyl COA-acyl c 99.7 7.3E-19 2.5E-23 105.3 -0.5 58 1-62 10-68 (303)
13 2cuy_A Malonyl COA-[acyl carri 99.7 1.8E-18 6.3E-23 103.7 1.0 58 1-62 9-67 (305)
14 3hhd_A Fatty acid synthase; tr 99.7 9.4E-18 3.2E-22 111.9 2.8 62 1-62 501-562 (965)
15 2c2n_A Malonyl COA-acyl carrie 99.7 1.5E-18 5.2E-23 105.2 -1.3 59 1-62 34-92 (339)
16 2qo3_A Eryaii erythromycin pol 99.7 4.8E-17 1.6E-21 108.1 3.9 62 1-62 541-605 (915)
17 2hg4_A DEBS, 6-deoxyerythronol 99.6 6.5E-17 2.2E-21 107.5 3.4 60 1-62 560-621 (917)
18 3sbm_A DISD protein, DSZD; tra 99.6 2E-16 6.8E-21 93.8 3.5 56 1-62 9-65 (281)
19 2vz8_A Fatty acid synthase; tr 99.6 4.3E-17 1.5E-21 115.3 0.1 62 1-62 499-560 (2512)
20 2uv8_G Fatty acid synthase sub 99.6 4.4E-16 1.5E-20 109.1 3.1 42 1-42 1669-1712(2051)
21 2uva_G Fatty acid synthase bet 99.6 9E-16 3.1E-20 107.7 3.2 42 1-42 1679-1722(2060)
22 3zen_D Fatty acid synthase; tr 99.6 8.3E-16 2.8E-20 110.1 2.8 62 1-62 1355-1431(3089)
23 3g87_A Malonyl COA-acyl carrie 99.6 7.5E-16 2.5E-20 95.2 1.9 56 1-62 14-70 (394)
24 2pff_B Fatty acid synthase sub 99.6 1.1E-15 3.6E-20 105.9 2.7 42 1-42 1624-1667(2006)
25 2pff_B Fatty acid synthase sub 99.4 1.8E-13 6.3E-18 95.0 3.6 62 1-62 163-245 (2006)
26 2uv8_G Fatty acid synthase sub 99.3 2.6E-12 8.9E-17 90.6 4.3 62 1-62 163-245 (2051)
27 3zen_D Fatty acid synthase; tr 99.2 9.8E-12 3.4E-16 89.7 3.3 62 1-62 51-133 (3089)
28 4amm_A DYNE8; transferase; 1.4 99.1 1.6E-12 5.5E-17 80.3 -2.6 49 1-62 106-155 (401)
29 2uva_G Fatty acid synthase bet 99.1 1.1E-10 3.8E-15 82.6 4.2 62 1-62 158-239 (2060)
30 2jek_A RV1873; structural geno 60.1 4.4 0.00015 22.1 1.5 33 10-42 66-99 (145)
31 3e21_A HFAF1, FAS-associated f 36.9 29 0.00098 14.9 2.3 19 22-40 21-39 (45)
32 3cuq_A Vacuolar-sorting protei 30.0 68 0.0023 18.6 3.3 22 11-35 33-54 (234)
33 2whn_A PILC, pilus assembly pr 29.9 54 0.0018 15.9 4.9 28 15-43 45-72 (116)
34 1u5t_A Appears to BE functiona 28.4 71 0.0024 18.5 3.2 21 15-38 57-77 (233)
35 1kdx_B CREB; complex (transcri 28.2 35 0.0012 13.3 2.4 17 10-26 7-24 (28)
36 1sgo_A HSPC210, protein C14ORF 26.2 52 0.0018 17.7 2.2 15 11-25 109-125 (139)
37 2cmp_A G1P, terminase small su 25.8 58 0.002 14.9 2.8 19 7-25 43-61 (63)
38 2oas_A ATOA, 4-hydroxybutyrate 25.6 70 0.0024 20.1 3.0 27 9-38 401-430 (436)
39 3b7h_A Prophage LP1 protein 11 25.5 53 0.0018 14.4 3.4 21 20-43 51-71 (78)
40 2kxa_A Haemagglutinin HA2 chai 23.7 46 0.0016 13.0 1.5 11 4-14 13-23 (30)
41 4ioe_A Secreted protein ESXB; 23.0 66 0.0023 14.9 2.2 27 3-29 44-72 (93)
42 1gzs_B SOPE; toxin/cell cycle, 22.0 90 0.0031 17.0 2.6 36 5-40 28-66 (165)
43 2kqz_A Proteasomal ubiquitin r 21.5 47 0.0016 18.0 1.5 26 6-31 72-97 (155)
No 1
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori}
Probab=99.78 E-value=1.2e-19 Score=109.59 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=54.5
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|+||+.+++|+++| |+++.++++++ .+.+++|.++||+||++|
T Consensus 22 QGsQ~~gMg~~L~~~~p~fr~~~~~~~~~l---g~~l~~~~~~~-~~~l~~t~~~Qpai~a~~ 80 (321)
T 2h1y_A 22 QGSQCIGMGKSFYEGHTLAKELFERASNAL---KVDMKKTLFEE-NELLKESAYTQPAIYLVS 80 (321)
T ss_dssp TTCCCTTTTHHHHHHCHHHHHHHHHHHHHH---TSCHHHHHHSC-CSSTTSHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHhCHHHHHHHHHHHHHc---CCCHHHHHhCC-hhhhccchhHHHHHHHHH
Confidence 89999999999999 999999999999999 99999999877 667899999999999875
No 2
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens}
Probab=99.77 E-value=1.9e-19 Score=109.22 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=56.0
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|+||+.+++|++++ |+++.+++++++.+.+++|.++||+||++|
T Consensus 11 QGsQ~~gMg~~L~~~~p~fr~~~~~~~~~l---g~~l~~~~~~~~~~~l~~t~~~Qpai~a~q 70 (336)
T 3ptw_A 11 QGAQYVGMGKEFFDNFEESKEVFKRSSEAL---GIDMEELCFNDPEGLLNKTEFTQPAIITTN 70 (336)
T ss_dssp TTCCCTTTTHHHHHHCHHHHHHHHHHHHHH---TSCHHHHHHTCTTSCTTSHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHhCHHHHHHHHHHHHHc---CCCHHHHhhCCChhhhcccchHHHHHHHHH
Confidence 89999999999999 999999999999999 999999999887778999999999999975
No 3
>3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A*
Probab=99.76 E-value=1.5e-19 Score=114.07 Aligned_cols=60 Identities=22% Similarity=0.265 Sum_probs=54.8
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccC-CCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPL-GLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~-g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
|||||+|||++||+ +|+||+.+++|+++++.. +|++.+++++++. ..++.++||+||++|
T Consensus 148 QGsQ~~gMG~~L~~~~p~fr~~~~~~~~~l~~~~~~sl~~~l~~~~~--~~~~~~~Qpalfa~q 209 (491)
T 3tzy_A 148 FGAQHRKMGKSLYLRNEVFAAWIEKVDALVQDELGYSVLELILDDAQ--DYGIETTQVTIFAIQ 209 (491)
T ss_dssp TTTCCTTTTHHHHHHCHHHHHHHHHHHHHHHHHHSSCHHHHHHCTTC--CCCHHHHHHHHHHHH
T ss_pred CCcchhhhHHHHhhcCHHHHHHHHHHHHHhhhhhchhHHHHhcCCch--hhhhHHHHHHHHHHH
Confidence 89999999999999 999999999999999987 9999999987643 367899999999976
No 4
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus}
Probab=99.74 E-value=3.7e-19 Score=106.94 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=55.9
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|+||+.+++|++++ |+++.+++++++.+.+++|.++||+||++|
T Consensus 19 QGsq~~gMg~~L~~~~p~~r~~~~~~~~~l---g~~l~~~l~~~~~~~l~~~~~~qpai~~~~ 78 (316)
T 3im9_A 19 QGAQKVGMAQDLFNNNDQATEILTSAAKTL---DFDILETMFTDEEGKLGETENTQPALLTHS 78 (316)
T ss_dssp TTCCCTTTTTTTTTTCHHHHHHHHHHHHHC---SSCHHHHHHTCTTSCTTSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHcCHHHHHHHHHHHHHc---CCCHHHHHhcCCHhHhccccchhHHHHHHH
Confidence 89999999999999 999999999999999 999999999877778999999999999875
No 5
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=99.74 E-value=1.5e-19 Score=108.88 Aligned_cols=59 Identities=25% Similarity=0.278 Sum_probs=55.3
Q ss_pred CCchHHHHHHHHhcCHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||.+|+||+.+++|+++| |+++.+++++++.+.+++|.++||+||++|
T Consensus 18 QGsQ~~gMg~~L~~~p~fr~~~~~~~~~l---g~~l~~~~~~~~~~~l~~t~~~Qpai~a~~ 76 (318)
T 3ezo_A 18 QGSQSVGMLNAFADVAVVRETLDEASDAL---GQDIGKLIADGPADELNLTTNTQPVMLTAA 76 (318)
T ss_dssp TTCCCTTTTGGGTTCHHHHHHHHHHHHHH---SSCHHHHHHHCCHHHHTSHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHhhCHHHHHHHHHHHHHh---CCCHHHHhhCCCHhHhccchhHHHHHHHHH
Confidence 89999999999999999999999999999 999999998877677899999999999875
No 6
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii}
Probab=99.74 E-value=3.1e-19 Score=107.34 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=55.2
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|+||+.+++|+++| |+++.+++++++.+.+++|.++||+||++|
T Consensus 15 QGsq~~gMg~~L~~~~p~fr~~~~~~~~~l---~~~l~~~~~~~~~~~l~~t~~~Qpai~a~~ 74 (316)
T 3tqe_A 15 QGSQHLGMLAELGLQQPIVLETFQQASSAL---AYDLWALVQHGPQERLDQTQFTQPALLTAD 74 (316)
T ss_dssp TTCCCTTTTHHHHHHCHHHHHHHHHHHHHH---TSCHHHHHHHCCHHHHTSHHHHHHHHHHHH
T ss_pred cchhhHhHHHHHHHcCHHHHHHHHHHHHHh---CcCHHHHHhcCcHhhhcccchHHHHHHHHH
Confidence 89999999999999 999999999999999 999999998876677899999999999875
No 7
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A*
Probab=99.74 E-value=3.2e-19 Score=107.08 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=54.9
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|+||+.+++|++++ |+++.+++++++.+.+++|.++||+||++|
T Consensus 11 QGsq~~gMg~~L~~~~p~fr~~~~~~~~~l---g~~l~~~~~~~~~~~l~~t~~~qpai~~~~ 70 (309)
T 1mla_A 11 QGSQTVGMLADMAASYPIVEETFAEASAAL---GYDLWALTQQGPAEELNKTWQTQPALLTAS 70 (309)
T ss_dssp TTCCCTTTTHHHHHHCHHHHHHHHHHHHHH---TSCHHHHHHHCCHHHHTSHHHHHHHHHHHH
T ss_pred CCcchhhhHHHHHHcCHHHHHHHHHHHHHh---CCCHHHHHhCCCHhHhcchhhHHHHHHHHH
Confidence 89999999999999 999999999999999 999999998776667899999999999875
No 8
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Probab=99.73 E-value=3.9e-19 Score=106.79 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=55.3
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|+||+.+++|++++ |+++.+++++++.+.+++|.++||+||++|
T Consensus 13 QGsq~~gMg~~L~~~~p~fr~~~~~~~~~l---g~~l~~~~~~~~~~~l~~t~~~qpai~a~~ 72 (314)
T 3k89_A 13 QGSQSLGMLAELSELHPQIRETFAEASEGA---GVDLWALSQGGPEEMLNRTEYTQPALLAAG 72 (314)
T ss_dssp TTCCCTTTTHHHHHHCTHHHHHHHHHHHHH---TSCHHHHHHHCCHHHHTSHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHcCHHHHHHHHHHHHHh---CCCHHHHHcCCchhhhcccchhhHHHHHHH
Confidence 89999999999999 999999999999999 999999998776667899999999999875
No 9
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae}
Probab=99.73 E-value=5.2e-19 Score=106.41 Aligned_cols=59 Identities=24% Similarity=0.242 Sum_probs=55.2
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|+||+.+++|++++ |+++.+++++++.+.+++|.++||+||++|
T Consensus 14 QGsq~~gMg~~L~~~~p~fr~~~~~~~~~l---~~~l~~~~~~~~~~~l~~t~~~Qpai~a~q 73 (318)
T 3qat_A 14 QGSQLIGMGKVLTEQFVAARMVFEEVDDAL---SEKLSDIIFEGPADVLTLTANAQPALMAVS 73 (318)
T ss_dssp TTCCCTTTTHHHHHHCHHHHHHHHHHHHHH---TSCHHHHHHHCCHHHHHSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHcCHHHHHHHHHHHHHH---CcCHHHHHhcCchhhhcccchhhHHHHHHH
Confidence 89999999999999 999999999999999 999999998876677899999999999975
No 10
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae}
Probab=99.72 E-value=4.6e-19 Score=106.28 Aligned_cols=58 Identities=21% Similarity=0.381 Sum_probs=53.0
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|+||+.+++|++++ |+++.+++ +++.+.+++|.++||+||++|
T Consensus 11 QGsq~~gMg~~L~~~~p~fr~~~~~~~~~l---g~~l~~~~-~~~~~~l~~t~~~Qpai~a~~ 69 (307)
T 3im8_A 11 QGAQYLGMGRDFYDQYPIVKETIDRASQVL---GYDLRYLI-DTEEDKLNQTRYTQPAILATS 69 (307)
T ss_dssp TTCCCTTTTHHHHHHCHHHHHHHHHHHHHH---TSCHHHHH-HHCHHHHTSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCHHHHh-CCcHhHhcccchHHHHHHHHH
Confidence 89999999999999 999999999999999 99999988 445556889999999999875
No 11
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Probab=99.71 E-value=1.1e-18 Score=105.17 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=53.9
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +| ||+.+++|++++ |+++.+++++++.+.+++|.++||+||++|
T Consensus 10 QGsq~~gMg~~L~~~~p-fr~~~~~~~~~l---g~~l~~~l~~~~~~~l~~t~~~qpai~a~~ 68 (317)
T 1nm2_A 10 QGAQTPGFLTDWLALPG-AADRVAAWSDAI---GLDLAHFGTKADADEIRDTSVAQPLLVAAG 68 (317)
T ss_dssp TTCCCTTTTHHHHTSTT-HHHHHHHHHHHH---TSCHHHHHHTCCHHHHTCHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHhcCc-HHHHHHHHHHHc---CCCHHHHHhcCChhhhcchhHHHHHHHHHH
Confidence 89999999999999 99 999999999999 999999998776667899999999999875
No 12
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophili fatty acids biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A
Probab=99.70 E-value=7.3e-19 Score=105.33 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +| ||+.+++|++++ |+++.+++++++.+.+++|.++||+||++|
T Consensus 10 QGsq~~gMg~~L~~~~p-fr~~~~~~~~~l---g~~l~~~~~~~~~~~l~~t~~~Qpai~a~~ 68 (303)
T 2qc3_A 10 QGSQTEGMLSPWLQLPG-AADQIAAWSKAA---DLDLARLGTTASTEEITDTAVAQPLIVAAT 68 (303)
T ss_dssp TTCCCTTTTTTTTTSTT-HHHHHHHHHHHT---TSCHHHHHHTSCHHHHTSHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHhcCc-HHHHHHHHHHHc---CCCHHHHHhcCCHhHhcchhHHHHHHHHHH
Confidence 89999999999999 99 999999999999 999999998766667899999999999875
No 13
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=99.70 E-value=1.8e-18 Score=103.66 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=53.7
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|+||+.+++|+++| | ++.+++++++.+.+++|.++||+||++|
T Consensus 9 QGsq~~gMg~~L~~~~p~fr~~~~~~~~~l---g-~l~~~~~~~~~~~l~~t~~~qpai~~~~ 67 (305)
T 2cuy_A 9 QGSHRVGMGRALYEASPAAKEVLDRAEAAL---P-GLLKLMWEGPEEALTLTENQQPALLAAG 67 (305)
T ss_dssp TTCCCTTTTHHHHHHCHHHHHHHHHHHHHS---T-THHHHHHHCCHHHHHSHHHHHHHHHHHH
T ss_pred CCcchhhhHHHHHHhCHHHHHHHHHHHHHH---h-hHHHHHcCCChhhhccchhhhHHHHHHH
Confidence 89999999999999 999999999999999 8 9999998776667899999999999875
No 14
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A
Probab=99.68 E-value=9.4e-18 Score=111.89 Aligned_cols=62 Identities=40% Similarity=0.816 Sum_probs=58.5
Q ss_pred CCchHHHHHHHHhcCHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||++|+||+.+++|+++++..|+++.+++++++.+.++++.++||+||++|
T Consensus 501 QGsQ~~gMg~~L~~~p~fr~~~~~~~~~l~~lg~~l~~~l~~~~~~~l~~~~~~Qpal~a~q 562 (965)
T 3hhd_A 501 MGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSLTAIQ 562 (965)
T ss_dssp SSCCCTTTTTTGGGSHHHHHHHHHHHHHHGGGTCCHHHHHHCCCTTGGGSHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHhChHHHHHHHHHHHHHHHcCCCHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence 89999999999999999999999999999888999999999877777999999999999976
No 15
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens}
Probab=99.68 E-value=1.5e-18 Score=105.20 Aligned_cols=59 Identities=27% Similarity=0.392 Sum_probs=54.4
Q ss_pred CCchHHHHHHHHhcCHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||++|+||+.+++|++++ |+++.+++.+++.+.+++|.++||+||++|
T Consensus 34 QGsQ~~gMg~~L~~~p~fr~~~~~~~~~l---g~~l~~~~~~~~~~~l~~t~~aQpai~a~~ 92 (339)
T 2c2n_A 34 QGSQVVGMGRGLLNYPRVRELYAAARRVL---GYDLLELSLHGPQETLDRTVHCQPAIFVAS 92 (339)
T ss_dssp TTCCCTTTTTTTTTSTTHHHHHHHHHHHH---SSCHHHHHHHCCHHHHHSHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHhChHHHHHHHHHHHHh---CCCHHHHHhcCCHhhhcchHHHHHHHHHHH
Confidence 89999999999999999999999999999 999999988766667899999999999874
No 16
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea}
Probab=99.66 E-value=4.8e-17 Score=108.07 Aligned_cols=62 Identities=23% Similarity=0.402 Sum_probs=57.0
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccC-CCCHHHhhcCCCC-CCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPL-GLDIVKIITSDDP-TTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~-g~~l~~~l~~~~~-~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|+||+.+++|+++|+.. +|+|.+++++++. +.++++.++||+||++|
T Consensus 541 QGsQ~~gMg~~L~~~~p~fr~~~~~~~~~l~~~~~~sl~~~l~~~~~~~~l~~~~~~Qpalfa~q 605 (915)
T 2qo3_A 541 QGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPGAPGLDRVDVVQPVLFAVM 605 (915)
T ss_dssp TTCCCTTTTHHHHHSCHHHHHHHHHHHHHTGGGCSSCHHHHHHTCTTCCCTTSHHHHHHHHHHHH
T ss_pred CcccccchhHHHHhhCHHHHHHHHHHHHHHhhhcCCCHHHHHhCCCccccccchhHHHHHHHHHH
Confidence 89999999999999 999999999999999988 9999999987643 45899999999999975
No 17
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea}
Probab=99.64 E-value=6.5e-17 Score=107.48 Aligned_cols=60 Identities=27% Similarity=0.560 Sum_probs=55.5
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccC-CCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPL-GLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~-g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|+||+.+++|+++|+.. +|++.+.+.+.+. ++++.++||+||++|
T Consensus 560 QGsQ~~gMg~~L~~~~p~fr~~~~~~~~~l~~~~~~~l~~~l~~~~~--l~~~~~~Qpalfa~q 621 (917)
T 2hg4_A 560 QGAQWQGMARDLLRESQVFADSIRDCERALAPHVDWSLTDLLSGARP--LDRVDVVQPALFAVM 621 (917)
T ss_dssp TTSCCSSTTHHHHHHCHHHHHHHHHHHHHHGGGCSSCHHHHHHTTCC--CCSHHHHHHHHHHHH
T ss_pred CccccccchHHHHhhCHHHHHHHHHHHHHHhhccCCCHHHHhcCCcc--ccchhhHHHHHHHHH
Confidence 89999999999999 999999999999999987 9999999986543 889999999999975
No 18
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium cellulosum} PDB: 3rgi_A
Probab=99.62 E-value=2e-16 Score=93.76 Aligned_cols=56 Identities=25% Similarity=0.311 Sum_probs=49.6
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|.| +++|++++ ||++.+++.+++.+.+++|.++||+||++|
T Consensus 9 QGsq~~gMg~~L~~~~~~~---~~~~d~~l---g~~l~~~~~~~~~~~l~~t~~~Qpal~~~~ 65 (281)
T 3sbm_A 9 QGSQAKGMGRALFDAFPAL---TARADGVL---GYSIRALCQDDPDQRLSQTQFTQPALYVVN 65 (281)
T ss_dssp TTCCCTTTTHHHHHHSHHH---HHHHHHHH---TSCHHHHHHTCTTSCTTSHHHHHHHHHHHH
T ss_pred CchhhHhHHHHHHHhCHHH---HHHHHhhc---CCCHHHHHhCCchhhhccchhhhHHHHHHH
Confidence 89999999999999 8866 56677888 999999998877778999999999999874
No 19
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=99.61 E-value=4.3e-17 Score=115.30 Aligned_cols=62 Identities=39% Similarity=0.789 Sum_probs=57.7
Q ss_pred CCchHHHHHHHHhcCHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||++|+||+.+++|+++++..||++.+++.+++.+.++++.++||+||++|
T Consensus 499 QGsQ~~gMg~~L~~~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~qpal~a~q 560 (2512)
T 2vz8_A 499 MGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVLDDIVSSFVSLTSIQ 560 (2512)
T ss_dssp SSCCCTTTTSSTTSSHHHHHHHHHHHHHHGGGTCCHHHHHHTCCHHHHHCHHHHHHHHHHHH
T ss_pred CCCchHhHHHHHHhChHHHHHHHHHHHHHHHCCCCHHHHHhcCCccccccHHHHHHHHHHHH
Confidence 89999999999999999999999999999888999999998876666889999999999986
No 20
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*
Probab=99.59 E-value=4.4e-16 Score=109.10 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=39.5
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccC-CCCHHHhhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPL-GLDIVKIITS 42 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~-g~~l~~~l~~ 42 (62)
|||||+|||++||+ +|+||+.+++|++++... ||||.+++++
T Consensus 1669 QGsQ~~GMG~~Ly~~~p~fr~~~d~~d~~l~~~lg~sl~~il~~ 1712 (2051)
T 2uv8_G 1669 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN 1712 (2051)
T ss_dssp TTCCCTTTTHHHHHHCHHHHHHHHHHHHHHHHHHSCCHHHHHHS
T ss_pred CCCchHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCchHHHHHhc
Confidence 89999999999999 999999999999998876 9999998865
No 21
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=99.57 E-value=9e-16 Score=107.67 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=39.5
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccC-CCCHHHhhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPL-GLDIVKIITS 42 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~-g~~l~~~l~~ 42 (62)
|||||+|||++||+ +|+||+.+++|+++++.. |||+.+++++
T Consensus 1679 QGsQ~~GMG~~Ly~~~p~fr~~~d~~d~~l~~~~g~sl~~~l~~ 1722 (2060)
T 2uva_G 1679 QGSQEQGMGMDLYATSPVAKEVWDRADKHFRENYGFSIIDIVKN 1722 (2060)
T ss_dssp TTCCCTTTTHHHHHHCHHHHHHHHHHHHHHHHHHSCCHHHHHHS
T ss_pred CCCcccchhHHHHhcCHHHHHHHHHHHHHHHHhhchHHHHHHhc
Confidence 89999999999999 999999999999998876 9999998865
No 22
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*
Probab=99.56 E-value=8.3e-16 Score=110.10 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=55.6
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccC-CCCHHHhhcCCCC-------------CCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPL-GLDIVKIITSDDP-------------TTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~-g~~l~~~l~~~~~-------------~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|+||+.+++|+++++.. ||+|.+++++++. ..+++|.++||+||++|
T Consensus 1355 QGsQ~~GMG~~L~~~~p~fr~~~d~~d~~l~~~lG~sl~~~l~~~~~~~~~~~~~~~~~~~~L~~t~~aQpal~a~q 1431 (3089)
T 3zen_D 1355 QGIQHKGMGMEVRARSKAARKVWDSADKFTRETLGFSVLHVVRDNPTSLIASGVHYHHPDGVLFLTQFTQVAMATVA 1431 (3089)
T ss_dssp SSCCCTTTTHHHHHHCHHHHHHHHHHHHHHHHHSSCCHHHHHHSCCSEEECSSCEEECSSCSTTSHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHhCHHHHHHHHHHHHHHHHhcCCCHHHHHhcCccccccccccccCchhhhhhhHHHHHHHHHHH
Confidence 89999999999999 999999999999988765 9999999987532 45789999999999875
No 23
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltran transferase; 2.30A {Burkholderia pseudomallei}
Probab=99.56 E-value=7.5e-16 Score=95.19 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=49.8
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|.| +++|++++ ||++.+++.+++.+.+++|.++||+||++|
T Consensus 14 QGsQ~~gMg~~L~~~~~~~---~~~~d~~l---g~~l~~l~~~~~~~~l~~t~~~QPalfav~ 70 (394)
T 3g87_A 14 QGSQAKGMGGALFDRFADL---TAQADAVL---GYSIRALCVDDPRDELGRTQFTQPALYVVN 70 (394)
T ss_dssp TTCCCTTCSTTHHHHTHHH---HHHHHHHH---SSCHHHHHHTCTTCCTTSHHHHHHHHHHHH
T ss_pred cchhhHhHHHHHHHHCHHH---HHHHHHHh---CCCHHHHhccCchhhhccchHHHHHHHHHH
Confidence 89999999999999 8865 66788888 999999998877778999999999999874
No 24
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.1e-15 Score=105.86 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=39.3
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccC-CCCHHHhhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPL-GLDIVKIITS 42 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~-g~~l~~~l~~ 42 (62)
||+||+|||++||+ +|+||+.+++|+++++.. ||+|.+++++
T Consensus 1624 QGSQy~GMGreLyes~PvFRe~LDe~DeiL~~llG~SLldlL~~ 1667 (2006)
T 2pff_B 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN 1667 (2006)
T ss_dssp SSCCCTTTTHHHHHHCHHHHHHHHHHHHHHHHHSSSCHHHHHHS
T ss_pred cccchHHHHHHHHhcCHHHHHHHHHHhHHHHHhcCCCHHHHHcc
Confidence 89999999999999 999999999999988875 9999998865
No 25
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.8e-13 Score=95.01 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=54.4
Q ss_pred CCch--HHHHHHHHhc-CH-HHHHHHHHHHHhhcc-------------CCCCHHHhhcCC----CCCCchhhHHHHHHHH
Q psy4741 1 MGSQ--WPGMARELMW-FA-PFRQAIFECDRVYRP-------------LGLDIVKIITSD----DPTTFDDILNSFVAIV 59 (62)
Q Consensus 1 QGsq--~~gMg~~L~~-~p-~f~~~~~~~~~~l~~-------------~g~~l~~~l~~~----~~~~~~~~~~~q~~i~ 59 (62)
||+| |+|||++||+ +| .||+.+++|+++|++ .||++.+.|.++ +.+.++++.++||+|+
T Consensus 163 QGSQ~~y~GMGRELyetyPpvFRe~IdeAdeiL~~La~sep~a~siyplG~DLle~L~~~es~Pd~e~L~sT~vSQPAIf 242 (2006)
T 2pff_B 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242 (2006)
T ss_dssp SCSCSCTHHHHHHHHTTTSGGGHHHHHHHHHHHHHTTGGGTTGGGSCCSCCCTTTTTTCGGGCCCSSTTSSHHHHHHHHH
T ss_pred cCcchhhhhHHHHHHHhChHHHHHHHHHHHHHhhhcccccccccccCCCCCCHHHHHhCCCCCCCHHHHccHHHHHHHHH
Confidence 8999 9999999999 88 999999999999841 389999988775 3456899999999999
Q ss_pred hcC
Q psy4741 60 TCH 62 (62)
Q Consensus 60 ~~q 62 (62)
++|
T Consensus 243 AvQ 245 (2006)
T 2pff_B 243 VIQ 245 (2006)
T ss_dssp HHH
T ss_pred HHH
Confidence 976
No 26
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*
Probab=99.27 E-value=2.6e-12 Score=90.57 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=53.6
Q ss_pred CCc--hHHHHHHHHhc-C-HHHHHHHHHHHHhhc-------------cCCCCHHHhhcCC----CCCCchhhHHHHHHHH
Q psy4741 1 MGS--QWPGMARELMW-F-APFRQAIFECDRVYR-------------PLGLDIVKIITSD----DPTTFDDILNSFVAIV 59 (62)
Q Consensus 1 QGs--q~~gMg~~L~~-~-p~f~~~~~~~~~~l~-------------~~g~~l~~~l~~~----~~~~~~~~~~~q~~i~ 59 (62)
||+ ||+|||++||+ + |.|++.+++|+++|. +.|+++.+.+.++ +.+.++++.++||+|+
T Consensus 163 QGs~~Q~~gMgreL~~~~~p~~r~~~d~a~~~L~~l~~~~~~~~~~~~~G~dL~~~l~~~~~~p~~~~L~~t~~sQPaI~ 242 (2051)
T 2uv8_G 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242 (2051)
T ss_dssp TTSCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSSSHHHHCTTCCCHHHHHHCGGGCCCHHHHHSHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHhChHHHHHHHHHHHHHHhhhccccccccccccCCCCHHHHHhCCCcCCchhhhhhHHHHHHHHH
Confidence 899 99999999999 8 799999999999974 1389999998876 2345889999999999
Q ss_pred hcC
Q psy4741 60 TCH 62 (62)
Q Consensus 60 ~~q 62 (62)
++|
T Consensus 243 a~q 245 (2051)
T 2uv8_G 243 VIQ 245 (2051)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 27
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*
Probab=99.18 E-value=9.8e-12 Score=89.75 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=52.6
Q ss_pred CCchHHHHHHHHhc-C---HHHHHHHHHHHHhhccC----------CCCHHHhhcCC-------CCCCchhhHHHHHHHH
Q psy4741 1 MGSQWPGMARELMW-F---APFRQAIFECDRVYRPL----------GLDIVKIITSD-------DPTTFDDILNSFVAIV 59 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~---p~f~~~~~~~~~~l~~~----------g~~l~~~l~~~-------~~~~~~~~~~~q~~i~ 59 (62)
||+||+|||++||+ + |.|++.+++++++|.+. |+++.+.|.++ +.+.+++|.++||+|+
T Consensus 51 QGsQ~~gMg~~L~~~~~~~p~~~~~~~~a~~~L~~l~~~~~~~~~~G~dl~~~l~~~~~~~~~p~~~~L~~t~~sQPaI~ 130 (3089)
T 3zen_D 51 QGSAWLETLEELVSSAGIESELATLAGEAELLLEPVASELVVVRPIGFEPLQWVRALAAEEPVPSDKQLTSAAVSVPGVL 130 (3089)
T ss_dssp SCSCHHHHHHHHHHTCSCCHHHHHHHHHHHHHHSSCCSCCTTHHHHSCCHHHHHHHHTSSSCCCCHHHHSSHHHHHHHHH
T ss_pred CCcchHHHHHHHHHccCccHHHHHHHHHHHHHHHhhhhhhccccCCCCCHHHHHhcccccccCCCHHHhccCchHHHHHH
Confidence 89999999999998 6 99999999999999332 89999998762 2235789999999999
Q ss_pred hcC
Q psy4741 60 TCH 62 (62)
Q Consensus 60 ~~q 62 (62)
++|
T Consensus 131 ~~s 133 (3089)
T 3zen_D 131 LTQ 133 (3089)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 28
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A
Probab=99.12 E-value=1.6e-12 Score=80.34 Aligned_cols=49 Identities=10% Similarity=-0.109 Sum_probs=29.0
Q ss_pred CCchHHHHHHHHhc-CHHHHHHHHHHHHhhccCCCCHHHhhcCCCCCCchhhHHHHHHHHhcC
Q psy4741 1 MGSQWPGMARELMW-FAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTCH 62 (62)
Q Consensus 1 QGsq~~gMg~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~q~~i~~~q 62 (62)
||+||+|||++||+ +|.|++.+++++. + +...+.+++|.++||+||++|
T Consensus 106 QGsq~~gMg~~L~~~~~~~~~~~~~~~~-~------------~~~~~~l~~~~~~Qpal~a~q 155 (401)
T 4amm_A 106 QAAPVHADRGALGHLLGDADAGTGSDPD-S------------GVKPAEPVDTAVAQPAIIADS 155 (401)
T ss_dssp CCCCBTTCCCSCCC------------------------------CCCCCCCHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHhCHHHHHHHHHhhc-c------------CCchhhhhhhhhHHHHHHHHH
Confidence 89999999999999 9999999888753 1 112345789999999999975
No 29
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=99.06 E-value=1.1e-10 Score=82.60 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=53.0
Q ss_pred CCc--hHHHHHHHHhc-C-HHHHHHHHHHHHhhcc------------CCCCHHHhhcCCC----CCCchhhHHHHHHHHh
Q psy4741 1 MGS--QWPGMARELMW-F-APFRQAIFECDRVYRP------------LGLDIVKIITSDD----PTTFDDILNSFVAIVT 60 (62)
Q Consensus 1 QGs--q~~gMg~~L~~-~-p~f~~~~~~~~~~l~~------------~g~~l~~~l~~~~----~~~~~~~~~~q~~i~~ 60 (62)
||+ ||+|||++||+ + |.|++.+++|+++|+. .+++|.+.+.+.+ .+.+.++.++||+|++
T Consensus 158 QGs~~q~~gmlr~L~~~~~p~~r~~l~~a~~~L~~l~~lp~~~~~~p~g~dL~~~l~~~~~~P~~~~L~~t~vsQP~i~a 237 (2060)
T 2uva_G 158 QGNIEEYFDELREIYTTYPSFVEDLITSIAELLQSLAREWDAVKQYPKGLDILQWLHNPESQPDTDYLVSAPVSFPLIGL 237 (2060)
T ss_dssp CSSCSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSHHHHHHCSSCCCHHHHHHSGGGCCCHHHHHSHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhhcccccccccCCCCCHHHHHhcCCcCCchHHhhhHHHHhHHHHH
Confidence 899 99999999999 8 9999999999999652 3899999887652 2347889999999998
Q ss_pred cC
Q psy4741 61 CH 62 (62)
Q Consensus 61 ~q 62 (62)
+|
T Consensus 238 ~Q 239 (2060)
T 2uva_G 238 VQ 239 (2060)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 30
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=60.13 E-value=4.4 Score=22.06 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=25.6
Q ss_pred HHHhcCHHHHHHHHHHHHhhccC-CCCHHHhhcC
Q psy4741 10 RELMWFAPFRQAIFECDRVYRPL-GLDIVKIITS 42 (62)
Q Consensus 10 ~~L~~~p~f~~~~~~~~~~l~~~-g~~l~~~l~~ 42 (62)
+..+++|+....+.+|.+++-.. |-+..+++-.
T Consensus 66 ~AYL~hpvLg~RL~e~~~~ll~~~~~sa~~IfG~ 99 (145)
T 2jek_A 66 QAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGP 99 (145)
T ss_dssp HHHHHSTTHHHHHHHHHHHHHHCCSCCHHHHSCT
T ss_pred HHHHcChHHHHHHHHHHHHHHhccCCCHHHHcCC
Confidence 44555899999999999988765 7788777643
No 31
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=36.93 E-value=29 Score=14.92 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=14.1
Q ss_pred HHHHHHhhccCCCCHHHhh
Q psy4741 22 IFECDRVYRPLGLDIVKII 40 (62)
Q Consensus 22 ~~~~~~~l~~~g~~l~~~l 40 (62)
+++|..+|...+|||...+
T Consensus 21 ~~~A~~~Lea~nWDLe~Av 39 (45)
T 3e21_A 21 IDEAITLLEQNNWDLVAAI 39 (45)
T ss_dssp HHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHH
Confidence 4677778877789986654
No 32
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=30.05 E-value=68 Score=18.64 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHhcCHHHHHHHHHHHHhhccCCCC
Q psy4741 11 ELMWFAPFRQAIFECDRVYRPLGLD 35 (62)
Q Consensus 11 ~L~~~p~f~~~~~~~~~~l~~~g~~ 35 (62)
++-++|.||..|.+....+ |.|
T Consensus 33 eI~~dp~fR~~F~~mc~si---GVD 54 (234)
T 3cuq_A 33 EIRKNPEFRVQFQDMCATI---GVD 54 (234)
T ss_dssp HHHHCHHHHHHHHHHHHHH---TCC
T ss_pred ccccCHHHHHHHHHHHHHc---CCC
Confidence 3434899999999998888 776
No 33
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=29.94 E-value=54 Score=15.92 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhhccCCCCHHHhhcCC
Q psy4741 15 FAPFRQAIFECDRVYRPLGLDIVKIITSD 43 (62)
Q Consensus 15 ~p~f~~~~~~~~~~l~~~g~~l~~~l~~~ 43 (62)
++.+++.+.++.+.+.. |.++.+.+...
T Consensus 45 ~~~~~~~~~~i~~~l~~-G~sls~al~~~ 72 (116)
T 2whn_A 45 NRKFREILKQVRTDVEG-GMAFSEALSKH 72 (116)
T ss_dssp SHHHHHHHHHHHHHHHT-TCCHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHC-CCcHHHHHHHC
Confidence 57888888888887765 88998888654
No 34
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=28.35 E-value=71 Score=18.54 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHhhccCCCCHHH
Q psy4741 15 FAPFRQAIFECDRVYRPLGLDIVK 38 (62)
Q Consensus 15 ~p~f~~~~~~~~~~l~~~g~~l~~ 38 (62)
+|.||..|.+....+ |.|...
T Consensus 57 dp~fR~~F~~mc~si---GVDPLa 77 (233)
T 1u5t_A 57 SPEFRSKFMHMCSSI---GIDPLS 77 (233)
T ss_dssp CHHHHHHHHHHHHHH---TCCHHH
T ss_pred CHHHHHHHHHHHHHc---CCCCCc
Confidence 699999999999888 888554
No 35
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=28.17 E-value=35 Score=13.28 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=12.9
Q ss_pred HHHhc-CHHHHHHHHHHH
Q psy4741 10 RELMW-FAPFRQAIFECD 26 (62)
Q Consensus 10 ~~L~~-~p~f~~~~~~~~ 26 (62)
++++. -|.|++.++..+
T Consensus 7 r~iL~rrpSYrkIlndls 24 (28)
T 1kdx_B 7 REILSRRPSYRKILNDLS 24 (28)
T ss_dssp HHHHTTSTHHHHHHHHHH
T ss_pred hhhhhcCchHHHHHHhhc
Confidence 56776 888888887765
No 36
>1sgo_A HSPC210, protein C14ORF129; HR969, structure, human protein, NESG, structural genomics, HS.4104 HOMO sapiens, NESG cluster ID 18152.; NMR {Homo sapiens} SCOP: d.82.3.1
Probab=26.23 E-value=52 Score=17.69 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=11.4
Q ss_pred HHhc--CHHHHHHHHHH
Q psy4741 11 ELMW--FAPFRQAIFEC 25 (62)
Q Consensus 11 ~L~~--~p~f~~~~~~~ 25 (62)
.|++ +|.||+.|..+
T Consensus 109 ~LL~~iSP~fr~~Fg~~ 125 (139)
T 1sgo_A 109 SLLDTLSPAYREAFGNA 125 (139)
T ss_dssp HHHHHHCHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHH
Confidence 4555 99999988754
No 37
>2cmp_A G1P, terminase small subunit; DNA packaging, DNA binding DO; 1.58A {Bacteriophage SF6}
Probab=25.83 E-value=58 Score=14.92 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=14.1
Q ss_pred HHHHHHhcCHHHHHHHHHH
Q psy4741 7 GMARELMWFAPFRQAIFEC 25 (62)
Q Consensus 7 gMg~~L~~~p~f~~~~~~~ 25 (62)
..|..|+..|.+++.|++.
T Consensus 43 ~~as~LL~~~~V~~~I~el 61 (63)
T 2cmp_A 43 AIGAENLQKPAIRARIDAR 61 (63)
T ss_dssp HHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHCchHHHHHHHHH
Confidence 3577888888888877764
No 38
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=25.65 E-value=70 Score=20.05 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=16.3
Q ss_pred HHHHhc--CHHHHHHHHHHH-HhhccCCCCHHH
Q psy4741 9 ARELMW--FAPFRQAIFECD-RVYRPLGLDIVK 38 (62)
Q Consensus 9 g~~L~~--~p~f~~~~~~~~-~~l~~~g~~l~~ 38 (62)
.+.|.+ +|.||+.+.+-. +.. +|+|.+
T Consensus 401 a~~li~iAhp~~r~~L~~~a~~~~---~~~~~~ 430 (436)
T 2oas_A 401 AQALINIAHPDFREQLSRDAFEVW---GLNLLE 430 (436)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHTS---CCCC--
T ss_pred HHHhhcCCCcchHHHHHHHHHHhc---chhhhh
Confidence 455655 899999885543 333 677654
No 39
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=25.51 E-value=53 Score=14.39 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=11.5
Q ss_pred HHHHHHHHhhccCCCCHHHhhcCC
Q psy4741 20 QAIFECDRVYRPLGLDIVKIITSD 43 (62)
Q Consensus 20 ~~~~~~~~~l~~~g~~l~~~l~~~ 43 (62)
+.+.+..++| |.++.+++...
T Consensus 51 ~~l~~ia~~l---~~~~~~l~~~~ 71 (78)
T 3b7h_A 51 TTIRKVCGTL---GISVHDFFDFP 71 (78)
T ss_dssp HHHHHHHHHH---TCCHHHHTCST
T ss_pred HHHHHHHHHc---CCCHHHHhcCC
Confidence 3445555555 66666555443
No 40
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=23.67 E-value=46 Score=13.04 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=9.0
Q ss_pred hHHHHHHHHhc
Q psy4741 4 QWPGMARELMW 14 (62)
Q Consensus 4 q~~gMg~~L~~ 14 (62)
-|+||...+|.
T Consensus 13 gW~gmi~gwyG 23 (30)
T 2kxa_A 13 GWTGMIDGWYG 23 (30)
T ss_dssp HHHHHHHHHHC
T ss_pred Ccccccccccc
Confidence 58999888876
No 41
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=23.01 E-value=66 Score=14.89 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=14.5
Q ss_pred chHHHHHHHHh-c-CHHHHHHHHHHHHhh
Q psy4741 3 SQWPGMARELM-W-FAPFRQAIFECDRVY 29 (62)
Q Consensus 3 sq~~gMg~~L~-~-~p~f~~~~~~~~~~l 29 (62)
+.|.|-+..=| . +..++..+.+..+.|
T Consensus 44 ~~W~G~a~~af~~~~~~~~~~~~~~~~~L 72 (93)
T 4ioe_A 44 GQWAGATQAKFRGEFIQSKQAMQQYIPIL 72 (93)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45777665433 2 555555555555555
No 42
>1gzs_B SOPE; toxin/cell cycle, complex (toxin/cell cycle protein), SOPE, CDC42, salmonella typhimurium, GEF, toxin, lipoprotein; 2.3A {Salmonella typhimurium} SCOP: a.168.1.1 PDB: 1r9k_A 1r6e_A
Probab=21.98 E-value=90 Score=16.96 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=23.4
Q ss_pred HHHHHHHHhc---CHHHHHHHHHHHHhhccCCCCHHHhh
Q psy4741 5 WPGMARELMW---FAPFRQAIFECDRVYRPLGLDIVKII 40 (62)
Q Consensus 5 ~~gMg~~L~~---~p~f~~~~~~~~~~l~~~g~~l~~~l 40 (62)
-|.-+++-++ ..+|.+.-++|...+...|.++...|
T Consensus 28 Dp~yarQt~Ea~lsavyS~~Kd~~c~~l~skg~~i~pfl 66 (165)
T 1gzs_B 28 DPAYASQTREAILSAVYSKNKDQCCNLLISKGINIAPFL 66 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCchHHH
Confidence 3444555554 46677778888888777677765554
No 43
>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A
Probab=21.48 E-value=47 Score=18.00 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=21.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhcc
Q psy4741 6 PGMARELMWFAPFRQAIFECDRVYRP 31 (62)
Q Consensus 6 ~gMg~~L~~~p~f~~~~~~~~~~l~~ 31 (62)
+...++.+.+|-|+++++..+.+|+.
T Consensus 72 ~e~L~~~l~SPQF~Qal~~fs~AL~s 97 (155)
T 2kqz_A 72 ADEIQNTLTSPQFQQALGMFSAALAS 97 (155)
T ss_dssp HHHHHSSCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 44555666699999999999999976
Done!