RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4741
(62 letters)
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 80.3 bits (198), Expect = 5e-20
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 1 MGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAI 58
MG+QW GM LM FR +I D+ +PLGL + ++ S D DDI++SFV++
Sbjct: 499 MGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVLDDIVSSFVSL 556
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 79.9 bits (198), Expect = 5e-20
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 1 MGSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAI 58
MG+QW GM LM FR +I D +P GL + +++ S D +TFDDI++SFV++
Sbjct: 501 MGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSL 558
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 4e-09
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 2 GSQWPGMARELMWFAPFRQAIFE-CDRVYRP-LGLDIVKIITSDDPTT 47
GSQ GM +L + Q ++ D ++ G I+ I+ ++P
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI-NNPVN 1671
Score = 31.6 bits (71), Expect = 0.009
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 19/75 (25%)
Query: 6 PGMARELMWFA-----PFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILN----SFV 56
+ +L+ F+ + + ++V+ GL+I++ + + T D L S
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVF-TQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 57 AI---------VTCH 62
I VT
Sbjct: 240 LIGVIQLAHYVVTAK 254
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 45.7 bits (109), Expect = 6e-08
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 2 GSQWPGMARELM-WFAPFRQAIFECDRVYRPL 32
G+QW GMAR+L+ F +I +C+R P
Sbjct: 561 GAQWQGMARDLLRESQVFADSIRDCERALAPH 592
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 45.7 bits (109), Expect = 7e-08
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 2 GSQWPGMARELM-WFAPFRQAIFECDRVYRPL 32
GSQW GM EL+ F I CD P+
Sbjct: 542 GSQWAGMGAELLSSSPVFAGKIRACDESMAPM 573
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta
hydrolase-like core; 2.00A {Streptomyces coelicolor}
SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Length = 317
Score = 34.8 bits (81), Expect = 5e-04
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 2 GSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDD 44
G+Q PG + + + +GLD+ T D
Sbjct: 11 GAQTPGFLTDWLALPGAADRVAAWSDA---IGLDLAHFGTKAD 50
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase;
malonyl-COA:ACP transacylase, , nucleophili fatty acids
biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB:
2qj3_A
Length = 303
Score = 32.9 bits (76), Expect = 0.002
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 2 GSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDD 44
GSQ GM + I + LD+ ++ T+
Sbjct: 11 GSQTEGMLSPWLQLPGAADQIAAWSKA---ADLDLARLGTTAS 50
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 31.5 bits (72), Expect = 0.007
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 2 GSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDD 44
GSQ GM L F F + D V LG I + D
Sbjct: 15 GSQAKGMGGAL--FDRFADLTAQADAV---LGYSIRALCVDDP 52
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid
synthase, lipid synthesis, mitochondrion transfer
transferase; HET: AE4; 1.55A {Homo sapiens}
Length = 339
Score = 31.1 bits (71), Expect = 0.011
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 2 GSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKII 40
GSQ GM R L+ + R+ RV LG D++++
Sbjct: 35 GSQVVGMGRGLLNYPRVRELYAAARRV---LGYDLLELS 70
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 30.9 bits (71), Expect = 0.013
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 2 GSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDD 44
GSQ GM R L F F D V LG I + D
Sbjct: 10 GSQAKGMGRAL--FDAFPALTARADGV---LGYSIRALCQDDP 47
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 30.4 bits (69), Expect = 0.020
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 2 GSQWPGMARELMWFAP-FRQAIFECDRVYRPL 32
G +PG A + + + D
Sbjct: 100 GLLFPGQAAPVHADRGALGHLLGDADAGTGSD 131
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B}
Length = 318
Score = 30.2 bits (69), Expect = 0.022
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 2 GSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKII 40
GSQ GM A R+ + E LG DI K+I
Sbjct: 19 GSQSVGMLNAFADVAVVRETLDEASDA---LGQDIGKLI 54
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT,
transferase; 2.50A {Helicobacter pylori}
Length = 321
Score = 29.0 bits (66), Expect = 0.050
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 2 GSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKII 40
GSQ GM + + +F L +D+ K +
Sbjct: 23 GSQCIGMGKSFYEGHTLAKELFERASNA---LKVDMKKTL 59
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
acid synthesis, malonyl-COA: acyl carrier protein TRAN
(MCAT), FABD; 1.46A {Staphylococcus aureus}
Length = 316
Score = 29.0 bits (66), Expect = 0.051
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 2 GSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKII 40
G+Q GMA++L I + L DI++ +
Sbjct: 20 GAQKVGMAQDLFNNNDQATEILTSAAKT---LDFDILETM 56
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural
genomics, protein structure initiative; 2.10A
{Clostridium perfringens}
Length = 336
Score = 29.0 bits (66), Expect = 0.064
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 2 GSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKII 40
G+Q+ GM +E + +F LG+D+ ++
Sbjct: 12 GAQYVGMGKEFFDNFEESKEVFKRSSEA---LGIDMEELC 48
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty
acid/phospholipid metabolism, transferase; HET: MSE;
1.50A {Coxiella burnetii}
Length = 316
Score = 28.6 bits (65), Expect = 0.084
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 2 GSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKII 40
GSQ GM EL P F + L D+ ++
Sbjct: 16 GSQHLGMLAELGLQQPIVLETFQQASSA---LAYDLWALV 52
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural
genomics center for infectious disease, S bartonella,
CAT-scratch disease; 1.60A {Bartonella henselae}
Length = 318
Score = 28.6 bits (65), Expect = 0.085
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 2 GSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKII 40
GSQ GM + L + +F E D L + II
Sbjct: 15 GSQLIGMGKVLTEQFVAARMVFEEVDDA---LSEKLSDII 51
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase;
acyltransferase; 1.50A {Escherichia coli} SCOP:
c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A*
3h0p_A 3hjv_A*
Length = 309
Score = 28.2 bits (64), Expect = 0.100
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 2 GSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKII 40
GSQ GM ++ P + F E LG D+ +
Sbjct: 12 GSQTVGMLADMAASYPIVEETFAEASAA---LGYDLWALT 48
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD,
xanthomonas oryzae PV. ORYZ KACC10331, transferase;
1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Length = 314
Score = 28.2 bits (64), Expect = 0.11
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 2 GSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKII 40
GSQ GM EL P + F E G+D+ +
Sbjct: 14 GSQSLGMLAELSELHPQIRETFAEASEG---AGVDLWALS 50
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 28.1 bits (62), Expect = 0.13
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 2 GSQWPGMARELMWFAPFRQAIFE-CDRVYRP-LGLDIVKII 40
GSQ GM +L +P + +++ D+ +R G I+ I+
Sbjct: 1680 GSQEQGMGMDLYATSPVAKEVWDRADKHFRENYGFSIIDIV 1720
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis,
malonyl-COA, acyl carrier protein TRAN (MCAT), FABD,
acyltransferase; 2.10A {Streptococcus pneumoniae}
Length = 307
Score = 27.5 bits (62), Expect = 0.20
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 2 GSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKII 40
G+Q+ GM R+ P + DR + LG D+ +I
Sbjct: 12 GAQYLGMGRDFYDQYPIVKETI--DRASQVLGYDLRYLI 48
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase,
structural genomics, NPPSFA; 2.10A {Thermus
thermophilus}
Length = 305
Score = 25.2 bits (56), Expect = 1.2
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 2 GSQWPGMARELMWFAPFRQAIF-ECDRVYRPLGLDIVKII 40
GS GM R L +P + + + L ++K++
Sbjct: 10 GSHRVGMGRALYEASPAAKEVLDRAEAA---LP-GLLKLM 45
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 24.8 bits (55), Expect = 2.0
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 5 WPGMARELMWFAPFRQA 21
W + L W P+++
Sbjct: 39 WGEQGKILDWITPYQKV 55
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 24.6 bits (53), Expect = 2.4
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 3 SQWPGMARELMWFAPFRQAIFECDRVYR 30
S W +LM P +F DR +R
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFR 235
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 24.6 bits (53), Expect = 2.7
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 3 SQWPGMARELMWFAPFRQAIFECDRVYR 30
S W +LM P +F DR +R
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFR 235
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 24.2 bits (52), Expect = 3.0
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 3 SQWPGMARELMWFAPFRQAIFECDRVYR 30
S W +LM P +F DR +R
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFR 235
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 24.2 bits (52), Expect = 3.3
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 3 SQWPGMARELMWFAPFRQAIFECDRVYR 30
S W +LM P +F DR +R
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFR 235
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 23.9 bits (52), Expect = 3.8
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 30 RPLGLDIVKIITSDDPTTFDDILNSFVAIVTC 61
+ G DIVKI T+ D+ F
Sbjct: 144 QQTGADIVKIATT--AVDIADVARMFHITSKA 173
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA,
protein degradation, structural genomics, NPPSFA; HET:
MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB:
2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A*
2z3p_A*
Length = 256
Score = 23.5 bits (50), Expect = 5.3
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 5 WPGMARELMWFAPFRQAIFECDRV 28
W ++W++P +A+ + +
Sbjct: 66 WFSPGDPILWWSPDPRAVLWPESL 89
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine,
antifolate resistance, oxidoreductase, transferase; HET:
CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A*
3qgt_A*
Length = 608
Score = 23.7 bits (51), Expect = 5.5
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 20 QAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFV 56
+ +ECD + + + +II+ D T ++ F+
Sbjct: 188 NSTYECDVFFPEINENEYQIISVSDVYTSNNTTLDFI 224
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 23.0 bits (49), Expect = 9.2
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 12 LMWFAPFRQAIFECDRVYRPLG 33
+ + + E RV +P G
Sbjct: 114 WHLVPDWPKVLAEAIRVLKPGG 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.143 0.482
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,053,513
Number of extensions: 48756
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 32
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.4 bits)