RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4741
         (62 letters)



>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
          malonyl-CoA ACP transacylase FabD {Streptomyces
          coelicolor A3(2) [TaxId: 100226]}
          Length = 253

 Score = 49.9 bits (118), Expect = 8e-10
 Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 2  GSQWPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVTC 61
          G+Q PG   + +        +         +GLD+    T  D     D   +   +V  
Sbjct: 11 GAQTPGFLTDWLALPGAADRVAAWSDA---IGLDLAHFGTKADADEIRDTSVAQPLLVAA 67

Query: 62 H 62
           
Sbjct: 68 G 68


>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
          malonyl-CoA ACP transacylase FabD {Escherichia coli
          [TaxId: 562]}
          Length = 235

 Score = 43.7 bits (102), Expect = 1e-07
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 2  GSQWPGMARELM-WFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFVAIVT 60
          GSQ  GM  ++   +    +   E       LG D+  +         +    +  A++T
Sbjct: 10 GSQTVGMLADMAASYPIVEETFAEASAA---LGYDLWALTQQGPAEELNKTWQTQPALLT 66


>d1ryja_ d.15.3.2 (A:) Hypothetical protein MTH1743 {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 70

 Score = 24.1 bits (52), Expect = 0.73
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 35 DIVKIITSDDPTTFDDILN 53
          D  KI+ S  P    D+L 
Sbjct: 13 DGKKILESGAPRRIKDVLG 31


>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase
           {Loblolly pine (Pinus taeda) [TaxId: 3352]}
          Length = 307

 Score = 22.4 bits (46), Expect = 5.5
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 5   WPGMARELMWFAPFRQAIFECDRVYRPLGLDIVKIITSDDPTTFDDILNSFV 56
              +A     F    Q  FE      P G++  ++      TT D+ L++FV
Sbjct: 260 NISIAISHSIFVKGDQTNFEIG----PAGVEASQLYPDVKYTTVDEYLSNFV 307


>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate
          dehydrogenase (IMPDH) {Chinese hamster (Cricetulus
          griseus) [TaxId: 10029]}
          Length = 378

 Score = 22.0 bits (46), Expect = 6.4
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 33 GLDIVKIITSDDPTTFDDIL 52
          GL   ++    D  T++D L
Sbjct: 1  GLTAQQLFNCGDGLTYNDFL 20


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.143    0.482 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 262,518
Number of extensions: 9733
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 8
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)