BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4744
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 133/247 (53%), Gaps = 3/247 (1%)
Query: 26 KLQTITKFDQTFFSLHSRLANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTNSC 85
KL+ +++FD +FF +HS+ AN +DP +R +E +EAI+D GINP SL G+++ V+
Sbjct: 53 KLKDLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWVGVS 112
Query: 86 ISD-DESLGCDERLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAV 144
SD E+L D + ++ R ++ANR+++ FD KGPS TID + + + L+ A
Sbjct: 113 SSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAY 172
Query: 145 QDISEGRVDTAIVGVXXXXXXXXXXXXFQGLNRLSPDGKTRSFDHLANGYARSEGIVVLL 204
Q I G A+VG F L LS DG RSFD GY R+E +V +L
Sbjct: 173 QAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAVVAVL 232
Query: 205 LQRSETALRSYGEVLHAESRFYGSLERPFVGFNQASLVE-FFTNFYQKARVNPGQVDFLE 263
L + A R Y +L+A + GS E+ V F + E + Y A +P ++++E
Sbjct: 233 LTKKSLARRVYATILNAGTNTDGSKEQ-GVTFPSGDVQEQLIRSLYAPAGPDPESLEYIE 291
Query: 264 ADGSAIK 270
A G+ K
Sbjct: 292 AHGTGTK 298
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 135/249 (54%), Gaps = 3/249 (1%)
Query: 24 ASKLQTITKFDQTFFSLHSRLANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTN 83
+ KL+ +++FD +FF +H + A+ +DP +R +E +EAI+D GINP SL G+++ V+
Sbjct: 53 SGKLKDLSRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTGVWVG 112
Query: 84 SCISD-DESLGCDERLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQ 142
S+ E+L D + ++ R ++ANR+++ FD +GPS +D + + + L+
Sbjct: 113 VSGSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQN 172
Query: 143 AVQDISEGRVDTAIVGVXXXXXXXXXXXXFQGLNRLSPDGKTRSFDHLANGYARSEGIVV 202
A Q I G+ AIVG F L LSP+G ++FD NGY RSEG+V
Sbjct: 173 AYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVA 232
Query: 203 LLLQRSETALRSYGEVLHAESRFYGSLERPFVGFNQASLVE-FFTNFYQKARVNPGQVDF 261
+LL + A R Y +L+A + G E+ V F + E + YQ A V P ++
Sbjct: 233 VLLTKKSLARRVYATILNAGTNTDGFKEQ-GVTFPSGDIQEQLIRSLYQSAGVAPESFEY 291
Query: 262 LEADGSAIK 270
+EA G+ K
Sbjct: 292 IEAHGTGTK 300
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 87.8 bits (216), Expect = 6e-18, Method: Composition-based stats.
Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 6/190 (3%)
Query: 33 FDQTFFSLHSRLANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTNSC---ISDD 89
FD FF + R A +DP R +E +E + +AGI+P SL G+ + V+ +D
Sbjct: 77 FDAEFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRGTATGVFLGVAKFGYGED 136
Query: 90 ESLGCDERLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISE 149
+ D + + + + RI+Y L+GPS ++D + + + L AV+ + +
Sbjct: 137 TAAAED---VEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRK 193
Query: 150 GRVDTAIVGVXXXXXXXXXXXXFQGLNRLSPDGKTRSFDHLANGYARSEGIVVLLLQRSE 209
G A+VG F L+ DG++++F A+G+ SEG+ ++LL+R
Sbjct: 194 GESSMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGFGFSEGVTLVLLERLS 253
Query: 210 TALRSYGEVL 219
A R+ EVL
Sbjct: 254 EARRNGHEVL 263
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 107/256 (41%), Gaps = 20/256 (7%)
Query: 27 LQTITKFDQTFFSLHSRLANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTNSCI 86
L FD FF + R A DP R +E +EA+ AG +P SL GS + V+T
Sbjct: 92 LAAAGDFDAGFFGISPREALAXDPQQRIXLEISWEALERAGHDPVSLRGSATGVFTGVGT 151
Query: 87 SD-----DESLGCDERLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLR 141
D DE+ DE L + + + R+AY L+GP+ T+D + + G+ L
Sbjct: 152 VDYGPRPDEA--PDEVL--GYVGTGTASSVASGRVAYCLGLEGPAXTVDTACSSGLTALH 207
Query: 142 QAVQDISEGRVDTAIVGVXXXXXXXXXXXXFQGLNRLSPDGKTRSFDHLANGYARSEGIV 201
A + + A+ G F+ L+ DG+ + F A+G+ +EG
Sbjct: 208 LAXESLRRDECGLALAGGVTVXSSPGAFTEFRSQGGLAADGRCKPFSKAADGFGLAEGAG 267
Query: 202 VLLLQRSETALRSYGEVLHA-------ESRFYGSLERPFVGFNQASLVEFFTNFYQKARV 254
VL+LQR A R VL + L P Q + N A V
Sbjct: 268 VLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALEN----AGV 323
Query: 255 NPGQVDFLEADGSAIK 270
G VD++EA G+ +
Sbjct: 324 RAGDVDYVEAHGTGTR 339
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/269 (19%), Positives = 105/269 (39%), Gaps = 24/269 (8%)
Query: 25 SKLQTITKFDQTFFSLHSRLANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTNS 84
S++ FD R + +D + + EA +G++P +L + V S
Sbjct: 47 SQVAAEADFDPVAEGFGPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGS 106
Query: 85 CISDDESLGCDERLTTN---------FWLLAH-----VRCLLANRIAYLFDLKGPSFTID 130
++ SL + L ++ WL H V ++ +A+ +GP +
Sbjct: 107 AVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVS 166
Query: 131 NSWTGGIEVLRQAVQDISEGRVDTAIVGVXXXXXXXXXXXXFQGLNRLS-----PDGKTR 185
T G++ + AV+ I EG D G F + + P+ +R
Sbjct: 167 TGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASR 226
Query: 186 SFDHLANGYARSEGIVVLLLQRSETALRSYGEVLHAESRFYGSLERPF----VGFNQASL 241
FD +G+ +EG + +L+ ++AL + G +HAE Y + + + + +
Sbjct: 227 PFDGTRDGFVLAEGAAMFVLEDYDSAL-ARGARIHAEISGYATRCNAYHMTGLKADGREM 285
Query: 242 VEFFTNFYQKARVNPGQVDFLEADGSAIK 270
E ++R + +D++ A GS +
Sbjct: 286 AETIRVALDESRTDATDIDYINAHGSGTR 314
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 97 RLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAI 156
R + F++ + + ++A + ++ L+GPS +I + T G+ + A + I+ G D +
Sbjct: 142 RKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIAYGDADVMV 201
Query: 157 VGVXXXXXXXXXXXXFQGLNRLS-----PDGKTRSFDHLANGYARSEGIVVLLLQRSETA 211
G F LS P +R +D +G+ +G +L+L+ E A
Sbjct: 202 AGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHA 261
Query: 212 LRSYGEVLHAESRFYG 227
+ G ++AE +G
Sbjct: 262 -KKRGAKIYAELVGFG 276
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 97 RLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAI 156
R + F++ + + ++A + ++ L+GPS +I + T G+ + A + I+ G D +
Sbjct: 142 RKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMV 201
Query: 157 VGVXXXXXXXXXXXXFQGLNRLS-----PDGKTRSFDHLANGYARSEGIVVLLLQRSETA 211
G F LS P +R +D +G+ +G +L+L+ E A
Sbjct: 202 AGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHA 261
Query: 212 LRSYGEVLHAESRFYG 227
+ G ++AE +G
Sbjct: 262 -KKRGAKIYAELVGFG 276
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 97 RLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAI 156
R + F++ + + ++A + ++ L+GPS +I + T G+ + A + I+ G D +
Sbjct: 142 RKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMV 201
Query: 157 VGVXXXXXXXXXXXXFQGLNRLS-----PDGKTRSFDHLANGYARSEGIVVLLLQRSETA 211
G F LS P +R +D +G+ +G +L+L+ E A
Sbjct: 202 AGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHA 261
Query: 212 LRSYGEVLHAESRFYG 227
+ G ++AE +G
Sbjct: 262 -KKRGAKIYAELVGFG 276
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 97 RLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAI 156
R + F++ + + ++A + ++ L+GPS +I + T G+ + A + I+ G D +
Sbjct: 142 RKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARIIAYGDADVMV 201
Query: 157 VGVXXXXXXXXXXXXFQGLNRLS-----PDGKTRSFDHLANGYARSEGIVVLLLQRSETA 211
G F LS P +R +D +G+ +G +L+L+ E A
Sbjct: 202 AGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHA 261
Query: 212 LRSYGEVLHAESRFYG 227
+ G ++AE +G
Sbjct: 262 -KKRGAKIYAELVGFG 276
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 97 RLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAI 156
R + F++ + + ++A + ++ L+GPS +I + T G+ + A + I+ G D +
Sbjct: 127 RKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMV 186
Query: 157 VGVXXXXXXXXXXXXFQGLNRLS-----PDGKTRSFDHLANGYARSEGIVVLLLQRSETA 211
G F LS P +R +D +G+ +G +L+L+ E A
Sbjct: 187 AGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHA 246
Query: 212 LRSYGEVLHAESRFYG 227
+ G ++AE +G
Sbjct: 247 -KKRGAKIYAELVGFG 261
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 91/249 (36%), Gaps = 24/249 (9%)
Query: 40 LHSRLANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYT-NSCISDD-------ES 91
+ RL DP R + A+ DA +P+SL + V T N+C D +
Sbjct: 68 IPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKL 127
Query: 92 LGCDERLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGR 151
+ + + A + +I+ ++GPS + GG++ L A + I G
Sbjct: 128 WSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRGT 187
Query: 152 VDTAIVGVXXXXXXXXXXXXFQGLNRLS----PDGKTRSFDHLANGYARSEGIVVLLLQR 207
GV R+S PD FD A GY EG +L+L+
Sbjct: 188 PLVVSGGVDSALDPWGWVSQIAS-GRISTATDPDRAYLPFDERAAGYVPGEGGAILVLED 246
Query: 208 SETALR-----SYGEVLHAESRFYGSLERPFVGFNQASLVEFFTNF-YQKARVNPGQVDF 261
S A +YGE+ S F P G + + +E A P VD
Sbjct: 247 SAAAEARGRHDAYGELAGCASTF-----DPAPGSGRPAGLERAIRLALNDAGTGPEDVDV 301
Query: 262 LEADGSAIK 270
+ ADG+ +
Sbjct: 302 VFADGAGVP 310
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 15/184 (8%)
Query: 97 RLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAI 156
R + F++ + L + ++ + L+GP+ ++ + + G + A + I+ G D +
Sbjct: 138 RRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHAIGDAARLIALGDADVML 197
Query: 157 VGVXXXXXXXXXXXXFQGLNRLS------PDGKTRSFDHLANGYARSEGIVVLLLQRSET 210
G F LS P+ +R +D +G+ EG +++L+ E
Sbjct: 198 AGGTESPINRISLAGFSACRALSTCRNDDPERASRPYDVDRDGFVMGEGAAIVVLEELEH 257
Query: 211 ALRSYGEVLHAESRFYG------SLERPFVGFNQASLVEFFTNFYQKARVNPGQVDFLEA 264
A + G ++AE YG + P A ++A+VN ++D++ A
Sbjct: 258 A-KKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQ--RSMMAALKRAQVNVSELDYINA 314
Query: 265 DGSA 268
G++
Sbjct: 315 HGTS 318
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 114/292 (39%), Gaps = 38/292 (13%)
Query: 11 NCPIKIKSSHNTPASKLQTITKFDQTFFSLHSRLANVLD-PLVRCFIE------------ 57
N P + +S T + ITKFD + F +H+ A + D P + F++
Sbjct: 38 NTPEEFWNSLATGKIGIGGITKFDHSDFDVHN-AAEIQDFPFDKYFVKKDTNRFDNYSLY 96
Query: 58 ---PCFEAILDAGINPKSLAGSNSSVYTNSCIS-----DDESLGCDERLTTNFWLLAHVR 109
EA+ A ++ ++L V S I +D+ L E+ + +
Sbjct: 97 ALYAAQEAVNHANLDVEALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPK 156
Query: 110 CL---LANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIVGVXXXXXXX 166
L + +A F G +I+ + + + + A + I G D +VG
Sbjct: 157 ALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITP 216
Query: 167 XXXXXFQGLNRLS----PDGKTRSFDHLANGYARSEGIVVLLLQRSETALRSYGEVLHAE 222
FQ L LS P + FD NG+ EG +L+L+ E A + G + AE
Sbjct: 217 FAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKR-GATILAE 275
Query: 223 SRFYGS------LERPFVGFNQASLVEFFTNFYQKARVNPGQVDFLEADGSA 268
YG+ + P A ++ ++A ++P QV ++ A G++
Sbjct: 276 VVGYGNTCDAYHMTSPHPEGQGA--IKAIKLALEEAEISPEQVAYVNAHGTS 325
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 113/292 (38%), Gaps = 38/292 (13%)
Query: 11 NCPIKIKSSHNTPASKLQTITKFDQTFFSLHSRLANVLD-PLVRCFIE------------ 57
N P + +S T + ITKFD + F +H+ A + D P + F++
Sbjct: 38 NTPAEFWNSLATGKIGIGGITKFDHSDFDVHNA-AEIQDFPFDKYFVKKDTNRFDNYSLY 96
Query: 58 ---PCFEAILDAGINPKSLAGSNSSVYTNSCIS-----DDESLGCDERLTTNFWLLAHVR 109
EA+ A ++ +L V S I +D+ L E+ + +
Sbjct: 97 ALYAAQEAVNHANLDVAALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPK 156
Query: 110 CL---LANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIVGVXXXXXXX 166
L + +A F G +I+ + + + + A + I G D +VG
Sbjct: 157 ALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITP 216
Query: 167 XXXXXFQGLNRLS----PDGKTRSFDHLANGYARSEGIVVLLLQRSETALRSYGEVLHAE 222
FQ L LS P + FD NG+ EG +L+L+ E A + G + AE
Sbjct: 217 FAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKR-GATILAE 275
Query: 223 SRFYGS------LERPFVGFNQASLVEFFTNFYQKARVNPGQVDFLEADGSA 268
YG+ + P A ++ ++A ++P QV ++ A G++
Sbjct: 276 VVGYGNTCDAYHMTSPHPEGQGA--IKAIKLALEEAEISPEQVAYVNAHGTS 325
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 114/292 (39%), Gaps = 38/292 (13%)
Query: 11 NCPIKIKSSHNTPASKLQTITKFDQTFFSLHSRLANVLD-PLVRCFIE------------ 57
N P + +S T + ITKFD + F +H+ A + D P + F++
Sbjct: 39 NTPEEFWNSLATGKIGIGGITKFDHSDFDVHN-AAEIQDFPFDKYFVKKDTNRFDNYSLY 97
Query: 58 ---PCFEAILDAGINPKSLAGSNSSVYTNSCIS-----DDESLGCDERLTTNFWLLAHVR 109
EA+ A ++ ++L V S I +D+ L E+ + +
Sbjct: 98 ALYAAQEAVNHANLDVEALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPK 157
Query: 110 CL---LANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIVGVXXXXXXX 166
L + +A F G +I+ + + + + A + I G D +VG
Sbjct: 158 ALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITP 217
Query: 167 XXXXXFQGLNRLS----PDGKTRSFDHLANGYARSEGIVVLLLQRSETALRSYGEVLHAE 222
FQ L LS P + FD NG+ EG +L+L+ E A + G + AE
Sbjct: 218 FAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKR-GATILAE 276
Query: 223 SRFYGS------LERPFVGFNQASLVEFFTNFYQKARVNPGQVDFLEADGSA 268
YG+ + P A ++ ++A ++P QV ++ A G++
Sbjct: 277 VVGYGNTCDAYHMTSPHPEGQGA--IKAIKLALEEAEISPEQVAYVNAAGTS 326
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 79/197 (40%), Gaps = 17/197 (8%)
Query: 86 ISDDESLGCDERL--TTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQA 143
I + L C++RL + F++ + + + ++ + +GP+ + G + A
Sbjct: 130 IVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 189
Query: 144 VQDISEGRVDTAIVGVXXXXXXXXXXXXFQGLNRLS------PDGKTRSFDHLANGYARS 197
+ I G D + G F LS P +R FD +G+
Sbjct: 190 TRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIG 249
Query: 198 EGIVVLLLQRSETALRSYGEVLHAESRFYG------SLERPFVGFNQASLVEFFTNFYQK 251
EG V++L+ E A R G ++AE YG + +P A L T ++
Sbjct: 250 EGSGVIVLEEYEHAKRR-GAKIYAELCGYGMSGDAHHITQPPEDGKGAVLA--MTRALRQ 306
Query: 252 ARVNPGQVDFLEADGSA 268
+ + P Q+D++ A ++
Sbjct: 307 SGLCPNQIDYVNAHATS 323
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 95/262 (36%), Gaps = 18/262 (6%)
Query: 23 PASKLQTITKFDQTFFSLHSRLANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYT 82
P + FD + L + A D I A+ D+G+ + V+
Sbjct: 47 PVKIAAELKDFDVEKY-LEKKEARKXDRFTHYAIASAEXAVQDSGLVIDDSNANRVGVWI 105
Query: 83 NSCISDDES--------LGCDERLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWT 134
S I E+ L R + F++ + + +++ F KG + T +
Sbjct: 106 GSGIGGXETFETQYEIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACA 165
Query: 135 GGIEVLRQAVQDISEGRVDTAIVGVXXXXXXXXXXXXFQGLNRLS--PDGKT--RSFDHL 190
+ A + I G D I G F LS PD +T R FD
Sbjct: 166 TATNSIGDAFKVIERGDADAXITGGAEAPITKXSLAGFTANKALSLNPDPETACRPFDKD 225
Query: 191 ANGYARSEGIVVLLLQRSETALRSYGEVLHAESRFYGSLERPF----VGFNQASLVEFFT 246
+G+ EG +++L+ E A ++ G ++AE YG+ + N
Sbjct: 226 RDGFIIGEGAGIVILEEYEHA-KARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXK 284
Query: 247 NFYQKARVNPGQVDFLEADGSA 268
A + P +VD++ A G++
Sbjct: 285 XAIDDAGLTPDKVDYINAHGTS 306
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 19/149 (12%)
Query: 136 GIEVLRQAVQDISEGRVDTAIVGVXXXXXXXXXXXXFQGL------NRLSPDGKTRSFDH 189
G E + +A Q I G D AI G F + N P G R FD
Sbjct: 190 GAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDR 249
Query: 190 LANGYARSEGIVVLLLQRSETALRSYGEVLHAESRFYGS--------LERPFVGFNQASL 241
+G+ EG +LL++ E A +L +R G+ + P +A
Sbjct: 250 DRDGFVFGEGGALLLIETEEHAKARGANIL---ARIMGASITSDGFHMVAPDPNGERAG- 305
Query: 242 VEFFTNFYQKARVNPGQVDFLEADGSAIK 270
T Q A + PG +D + A + +
Sbjct: 306 -HAITRAIQLAGLAPGDIDHVNAHATGTQ 333
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 123 KGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIVGVXXXXXXXXXXXXFQGLNRLS--- 179
KGP+ + G + A + + G I G F LS
Sbjct: 157 KGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRN 216
Query: 180 --PDGKTRSFDHLANGYARSEGIVVLLLQRSETAL----RSYGEVL 219
P +R FD +G+ EG +L+L+ E+AL + YGE++
Sbjct: 217 DDPLHASRPFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMV 262
>pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli
pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked
With Ferrous Ions
pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
Length = 319
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 86 ISDDESLGCDERLTTNFWLLAHV 108
ISDD+ L RLT+NFWL V
Sbjct: 14 ISDDKDLEVWNRLTSNFWLPEKV 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,470,411
Number of Sequences: 62578
Number of extensions: 272762
Number of successful extensions: 645
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 24
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)