RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4744
(270 letters)
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 181 bits (460), Expect = 6e-52
Identities = 87/243 (35%), Positives = 136/243 (55%), Gaps = 1/243 (0%)
Query: 26 KLQTITKFDQTFFSLHSRLANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTNSC 85
KL+ +++FD +FF +HS+ AN +DP +R +E +EAI+D GINP SL G+++ V+
Sbjct: 53 KLKDLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWVGVS 112
Query: 86 ISD-DESLGCDERLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAV 144
SD E+L D + ++ R ++ANR+++ FD KGPS TID + + + L+ A
Sbjct: 113 SSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAY 172
Query: 145 QDISEGRVDTAIVGVSNLLLNANLNSLFQGLNRLSPDGKTRSFDHLANGYARSEGIVVLL 204
Q I G A+VG N+LL N + F L LS DG RSFD GY R+E +V +L
Sbjct: 173 QAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGTCRSFDAEGTGYCRAEAVVAVL 232
Query: 205 LQRSETALRSYGEVLHAESRFYGSLERPFVGFNQASLVEFFTNFYQKARVNPGQVDFLEA 264
L + A R Y +L+A + GS E+ + + + Y A +P ++++EA
Sbjct: 233 LTKKSLARRVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLEYIEA 292
Query: 265 DGS 267
G+
Sbjct: 293 HGT 295
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 147 bits (374), Expect = 2e-40
Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 47/265 (17%)
Query: 26 KLQTITKFDQTFFSLHSRLANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTNSC 85
KL+ +++FD +FF +H + A+ +DP +R +E +EAI+D GINP SL G+++ V+
Sbjct: 55 KLKDLSRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRGTHTGVWVGVS 114
Query: 86 ISD-DESLGCDERLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTID----NSWTGGIEVL 140
S+ E+L D + ++ R ++ANR+++ FD +GPS +D +S L
Sbjct: 115 GSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMA----L 170
Query: 141 RQAVQDISEGRVDTAIVGVSNLLLNANLNSLFQGLNRLSPDGKTRSFDHLANGYARSEGI 200
+ A Q I G+ AIVG N+LL N + F L LSP+G ++FD NGY RSEG+
Sbjct: 171 QNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGV 230
Query: 201 VVLLLQRSETALRSYGEVLHAESRFYGSLERPFVGFNQ---ASLVEFFTN---------- 247
V +LL + A R Y +L+A G N
Sbjct: 231 VAVLLTKKSLARRVYATILNA-------------GTNTDGFKE------QGVTFPSGDIQ 271
Query: 248 ------FYQKARVNPGQVDFLEADG 266
YQ A V P +++EA G
Sbjct: 272 EQLIRSLYQSAGVAPESFEYIEAHG 296
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 110 bits (278), Expect = 1e-27
Identities = 66/250 (26%), Positives = 113/250 (45%), Gaps = 17/250 (6%)
Query: 27 LQTITKFDQTFFSLHSRLANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTNSCI 86
L FD FF + R A +DP R +E +E + +AGI+P SL G+ + V+
Sbjct: 71 LDDAAGFDAEFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLRGTATGVFLGVAK 130
Query: 87 SDDESLGCDERLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQD 146
+ + + + RI+Y L+GPS ++D + + + L AV+
Sbjct: 131 FGYGEDTAAAEDVEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVES 190
Query: 147 ISEGRVDTAIVGVSNLLLNANLNSLFQGLNRLSPDGKTRSFDHLANGYARSEGIVVLLLQ 206
+ +G A+VG + ++ + F L+ DG++++F A+G+ SEG+ ++LL+
Sbjct: 191 LRKGESSMAVVGGAAVMATPGVFVDFSRQRALAADGRSKAFGAGADGFGFSEGVTLVLLE 250
Query: 207 RSETALRSYGEVLHAESRFYGS----------LERPFVGFNQASLVEFFTNFYQKARVNP 256
R A R+ EVL A R GS L P + + + + + P
Sbjct: 251 RLSEARRNGHEVL-AVVR--GSALNQDGASNGLSAPSGPAQRRVIRQALES----CGLEP 303
Query: 257 GQVDFLEADG 266
G VD +EA G
Sbjct: 304 GDVDAVEAHG 313
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 109 bits (275), Expect = 3e-27
Identities = 70/251 (27%), Positives = 107/251 (42%), Gaps = 18/251 (7%)
Query: 27 LQTITKFDQTFFSLHSRLANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTNSCI 86
L FD FF + R A +DP R +E +EA+ AG +P SL GS + V+T
Sbjct: 92 LAAAGDFDAGFFGISPREALAMDPQQRIMLEISWEALERAGHDPVSLRGSATGVFTGVGT 151
Query: 87 SD-DESLGCDERLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQ 145
D + + + R+AY L+GP+ T+D + + G+ L A++
Sbjct: 152 VDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGLEGPAMTVDTACSSGLTALHLAME 211
Query: 146 DISEGRVDTAIVGVSNLLLNANLNSLFQGLNRLSPDGKTRSFDHLANGYARSEGIVVLLL 205
+ A+ G ++ + + F+ L+ DG+ + F A+G+ +EG VL+L
Sbjct: 212 SLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLAADGRCKPFSKAADGFGLAEGAGVLVL 271
Query: 206 QRSETALRSYGEVLHAESRFYGS----------LERPFVGFNQASLVEFFTNFYQKARVN 255
QR A R VL A R GS L P Q + N A V
Sbjct: 272 QRLSAARREGRPVL-AVLR--GSAVNQDGASNGLTAPSGPAQQRVIRRALEN----AGVR 324
Query: 256 PGQVDFLEADG 266
G VD++EA G
Sbjct: 325 AGDVDYVEAHG 335
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 52.6 bits (126), Expect = 5e-08
Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 29/193 (15%)
Query: 61 EAILDAGINP-----KSLAGSNSSVYTNSCISDDESLGCDERLTTNFWLLAHVR------ 109
EA + +GI K + S + S + +L + + + V+
Sbjct: 1022 EAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSAL---RGMFKDRFKDEPVQNDILQE 1078
Query: 110 CLLAN----RIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIVG----VSN 161
+ L GP T + +E + V+ I G+ IVG
Sbjct: 1079 SFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQE 1138
Query: 162 LLLN--ANLNSLFQGLNRL----SPDGKTRSFDHLANGYARSEGIVVLLLQRSETALRSY 215
N+ + L +P +R NG+ ++G + ++ +++ AL+
Sbjct: 1139 EGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKM- 1197
Query: 216 GEVLHAESRFYGS 228
G ++ +
Sbjct: 1198 GVPIYGIVAMAAT 1210
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 3e-06
Identities = 49/276 (17%), Positives = 86/276 (31%), Gaps = 95/276 (34%)
Query: 18 SSHNTPASKLQTITKF-----DQTFFSLHSRLANVLDPLVRCFIEPCFEAILDAGINPKS 72
++ + P + + + KF S + VL+ + F E C+ L G + +
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-ENCY---L-EGNDIHA 103
Query: 73 LAGSNSSVYTNSCISDDESLGCDERLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNS 132
LA +D +L + L N+ + A ++A R P NS
Sbjct: 104 LAAKLLQ-------ENDTTLVKTKELIKNY-ITA---RIMAKR---------PFDKKSNS 143
Query: 133 WTGGIEVLRQAVQDISEGRVDTAIVGVSNLLLNANLNSLF--QGLNRLSPDGKTRSFDHL 190
L +AV + G NA L ++F QG N F+ L
Sbjct: 144 ------ALFRAVGE-----------G------NAQLVAIFGGQG-NTDDY------FEEL 173
Query: 191 ANGYARSEGIVVLLLQRSETALRSYGEVLHAESRFYGS-------LER------------ 231
+ Y +V L++ S L + + LE
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 232 -----PFVGFNQASLVEFFTNFYQKARV---NPGQV 259
P +G Q ++ A++ PG++
Sbjct: 234 IPISCPLIGVIQ------LAHYVVTAKLLGFTPGEL 263
Score = 33.1 bits (75), Expect = 0.10
Identities = 33/218 (15%), Positives = 60/218 (27%), Gaps = 84/218 (38%)
Query: 55 FIEPCFEAILDAGINPKSL---AGSNSSVYTNSCISDDESLGCDERLTTNFWLLAHVRCL 111
+ FE I+D + + + +S+ YT S+ L T L
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR--SEKGLL----SATQF----TQP-AL 1736
Query: 112 LANRIAYLFDLKGPSFTIDNSWTGG---------------------IEVLRQ-------A 143
A DLK ++ G +EV+ A
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 144 VQDISEGRVDTAIVGV------------------------SNLLLN-ANLNSLFQGLNRL 178
V GR + ++ + + L+ N N
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN--------- 1847
Query: 179 SPD------GKTRSFDHLAN--GYARSEGIVVLLLQRS 208
+ G R+ D + N + + + I ++ LQ+S
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Score = 29.6 bits (66), Expect = 1.3
Identities = 39/207 (18%), Positives = 65/207 (31%), Gaps = 61/207 (29%)
Query: 93 GCDERLTT----NFWLLA--HVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQ---- 142
G D T+ + W A H + I + + TI G + +R+
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG-KRIRENYSA 1690
Query: 143 -AVQDISEGRVDTAIVGVSNLLLNANLNSL-FQGLNRLSPDG---KTRSFDH---LANGY 194
+ I +G++ T + +N + S F+ G T F
Sbjct: 1691 MIFETIVDGKLKTEKI---FKEINEHSTSYTFRS-----EKGLLSAT-QFTQPALTLMEK 1741
Query: 195 A-----RSEGIVVLLLQR-------S--E-TALRSYGEVLHAES-------RFYGSLERP 232
A +S+G++ S E AL S +V+ ES R G +
Sbjct: 1742 AAFEDLKSKGLI----PADATFAGHSLGEYAALASLADVMSIESLVEVVFYR--GMTMQ- 1794
Query: 233 FVGFNQASLVEFFTNFYQKARVNPGQV 259
E + Y +NPG+V
Sbjct: 1795 ----VAVPRDELGRSNYGMIAINPGRV 1817
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 42/284 (14%), Positives = 79/284 (27%), Gaps = 66/284 (23%)
Query: 2 EFNTGVARRNCPI---KIKSSHNTPASKLQTITKFDQTFFSLHSRLANVLDPLVRCFI-- 56
+F V R N IK+ P+ + + RL N + +
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRM-------YIEQRDRLYNDNQVFAKYNVSR 133
Query: 57 EPCFEAILDA--GINPKS------LAGSNSSVYTNSCISDDESLGCDERLTTN-FWL-LA 106
+ + A + P + GS + + ++ FWL L
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ---CKMDFKIFWLNLK 190
Query: 107 HVRC---LLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIVGVSNLL 163
+ +L L L + ID +WT + I + + LL
Sbjct: 191 NCNSPETVLEM----LQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQA-----ELRRLL 238
Query: 164 LNANL-NSLFQGLNRLSPDGKT-RSFDHLANGYARSEGIVVLLLQRSETALRSYGEVLHA 221
+ N L L + + K +F+ +LL R + + L A
Sbjct: 239 KSKPYENCLLV-LLNVQ-NAKAWNAFNL---------SCKILLTTRF----KQVTDFLSA 283
Query: 222 ESRFYGSLERPFVGFNQASLVEFFTNFY---------QKARVNP 256
+ + SL+ + + + + NP
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 35.7 bits (82), Expect = 0.016
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 11/126 (8%)
Query: 113 ANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIVG----VSNLL----- 163
A L GP T + +E + V+ I G+ IVG
Sbjct: 1285 AWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFG 1344
Query: 164 -LNANLNSLFQGLNRLSPDGKTRSFDHLANGYARSEGIVVLLLQRSETALRSYGEVLHAE 222
+ A N+L + + +P +R NG+ ++G + ++ +++ AL+ G ++
Sbjct: 1345 NMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKM-GVPIYGI 1403
Query: 223 SRFYGS 228
+
Sbjct: 1404 VAMAAT 1409
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 34.1 bits (78), Expect = 0.049
Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 15/128 (11%)
Query: 113 ANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIVGVSNLLLN------- 165
A L GP T + +E L I +G+ +VG +
Sbjct: 1260 AWVNMLLLSSTGPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFA 1319
Query: 166 -----ANLNSLFQGLNRLSPDGKTRSFDHLANGYARSEGIVVLLLQRSETALRSYGEVLH 220
+N F R P +R NG+ S+G V ++ ++ AL G ++
Sbjct: 1320 NMGATSNAKEEF-ARGR-EPGEMSRPTSTTRNGFMESQGCGVQVIMTAQLALEM-GVPIY 1376
Query: 221 AESRFYGS 228
+
Sbjct: 1377 GIVAMTST 1384
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 45 ANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSV 80
A+ +PL CF E +E L+ N + V
Sbjct: 1 ADDRNPLAECFQENDYEEFLEIARNGLKATSNPKHV 36
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 28.2 bits (64), Expect = 2.7
Identities = 39/183 (21%), Positives = 60/183 (32%), Gaps = 34/183 (18%)
Query: 61 EAILDAGINPKSLAGSNSSVYTNSCISDDESLGCDERLTTNFWLLAHVRC-------LLA 113
A+ DA +P+SL + V T + R W
Sbjct: 89 WALQDAKADPESLTDYDMGVVTANACG---GFDFTHREFRKLWSEGPKSVSVYESFAWFY 145
Query: 114 N----RIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIVG-----VSNLLL 164
+I+ ++GPS + GG++ L A + I G + G +
Sbjct: 146 AVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGW 204
Query: 165 NANLNSLFQGLNRLS----PDGKTRSFDHLANGYARSEGIVVLLLQRSETALRS-----Y 215
+ R+S PD FD A GY EG +L+L+ S A Y
Sbjct: 205 VS-----QIASGRISTATDPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAY 259
Query: 216 GEV 218
GE+
Sbjct: 260 GEL 262
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 27.9 bits (63), Expect = 3.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 42 SRLANVLDPLVRCFIEPCFEAILDAGINPK 71
++L ++++ LV IE A+ DAG++
Sbjct: 303 AKLESLVEDLVNRSIELLKVALQDAGLSVS 332
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 27.6 bits (62), Expect = 4.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 42 SRLANVLDPLVRCFIEPCFEAILDAGINPK 71
++L ++++ LV IEP A+ DAG++
Sbjct: 303 AKLESLVEDLVNRSIEPLKVALQDAGLSVS 332
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 26.8 bits (60), Expect = 8.5
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 134 TGGIEVLRQAVQDISEGRVDTAIVGVSNLLLNANLNSLFQG 174
G + L+ AV G +VG + + G
Sbjct: 273 AGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILG 313
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.400
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,024,798
Number of extensions: 230865
Number of successful extensions: 507
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 26
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)