RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4744
(270 letters)
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 249
Score = 110 bits (276), Expect = 7e-30
Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 13/179 (7%)
Query: 48 LDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTNSCISD--------DESLGCDERLT 99
LD V+ + A+ DAG+ P+ L + I L
Sbjct: 68 LDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRI 127
Query: 100 TNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIVGV 159
+ F++ + + + IA + GPS T+ + G + L A++ I G D + G
Sbjct: 128 SPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGG 187
Query: 160 SNLLLNANLNSLFQGLNRLS-----PDGKTRSFDHLANGYARSEGIVVLLLQRSETALR 213
+ + F + LS P+ +R F +G+ EG VL+L+ E A +
Sbjct: 188 TEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLVLEAYEHAKK 246
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 102 bits (255), Expect = 8e-27
Identities = 37/203 (18%), Positives = 78/203 (38%), Gaps = 13/203 (6%)
Query: 24 ASKLQTITKFDQTFFSLHSRLANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTN 83
A+K + K + + +D ++ I +A+ D+G+ +
Sbjct: 45 ATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIG 104
Query: 84 SCISDDES--------LGCDERLTTNFWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTG 135
S I + R + F++ + + ++A + ++ L+GPS +I + T
Sbjct: 105 SGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTS 164
Query: 136 GIEVLRQAVQDISEGRVDTAIVGVSNLLLNANLNSLFQGLNRLS-----PDGKTRSFDHL 190
G+ + A + I+ G D + G + F LS P +R +D
Sbjct: 165 GVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKE 224
Query: 191 ANGYARSEGIVVLLLQRSETALR 213
+G+ +G +L+L+ E A +
Sbjct: 225 RDGFVLGDGAGMLVLEEYEHAKK 247
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 256
Score = 97.7 bits (242), Expect = 6e-25
Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 12/177 (6%)
Query: 49 DPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTNSCISDDESLGCDERLTTN------- 101
D + EA+ A ++ ++L V S I + +
Sbjct: 77 DNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVK 136
Query: 102 -FWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIVGVS 160
L + + + +A F G +I+ + + + + A + I G D +VG +
Sbjct: 137 PMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGT 196
Query: 161 NLLLNANLNSLFQGLNRLS----PDGKTRSFDHLANGYARSEGIVVLLLQRSETALR 213
+ + FQ L LS P + FD NG+ EG +L+L+ E A +
Sbjct: 197 EASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEK 253
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 91.2 bits (225), Expect = 1e-22
Identities = 38/203 (18%), Positives = 68/203 (33%), Gaps = 13/203 (6%)
Query: 24 ASKLQTITKFDQTFFSLHSRLANVLDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTN 83
A + K L + A +D + +AI DA + L V
Sbjct: 45 ACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADEIGVLIG 104
Query: 84 SCISDDESLGCDERLTTN--------FWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTG 135
+ I + L + + + F + + + + A KGP+ +
Sbjct: 105 TGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAA 164
Query: 136 GIEVLRQAVQDISEGRVDTAIVGVSNLLLNANLNSLFQGLNRLS-----PDGKTRSFDHL 190
G + A + + G I G + + + F LS P +R FD
Sbjct: 165 GSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKD 224
Query: 191 ANGYARSEGIVVLLLQRSETALR 213
+G+ EG +L+L+ E+AL
Sbjct: 225 RDGFVMGEGSGILILEELESALA 247
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 75.4 bits (184), Expect = 1e-16
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 102 FWLLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIVGVSN 161
F++ + + + ++ + +GP+ + G + A + I G D + G +
Sbjct: 148 FFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTE 207
Query: 162 LLLNANLNSLFQGLNRLS------PDGKTRSFDHLANGYARSEGIVVLLLQRSETALR 213
++A + F LS P +R FD +G+ EG V++L+ E A R
Sbjct: 208 SSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKR 265
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 61.1 bits (147), Expect = 1e-11
Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 8/154 (5%)
Query: 65 DAGINPKSLAGSNSSVYTNSCISDDESLGCDERLTTNFWLLAHVRCLLANRIAYLFDLKG 124
G+ S GS + + + + + ++ +A F + G
Sbjct: 98 RVGLIAGSGGGSPRFQVFGADAMRGPR---GLKAVGPYVVTKAMASGVSACLATPFKIHG 154
Query: 125 PSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIVGVSNLLLNANLNSLFQG-----LNRLS 179
+++I ++ + AV+ I G+ D G L +
Sbjct: 155 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDT 214
Query: 180 PDGKTRSFDHLANGYARSEGIVVLLLQRSETALR 213
P+ +R++D +G+ + G +++++ E AL
Sbjct: 215 PEKASRTYDAHRDGFVIAGGGGMVVVEELEHALA 248
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 51.0 bits (121), Expect = 2e-08
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 180 PDGKTRSFDHLANGYARSEGIVVLLLQRSETALR 213
P+ +R FD +G+ +EG + +L+ ++AL
Sbjct: 3 PEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALA 36
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 50.8 bits (120), Expect = 3e-08
Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 14/145 (9%)
Query: 50 PLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTNSCISDDESLGCDERLTTNFWLLAHV- 108
+ + EA +G++P +L + V S ++ SL + L ++ V
Sbjct: 70 RASQFAVACAREAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVD 129
Query: 109 -------------RCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTA 155
++ +A+ +GP + T G++ + AV+ I EG D
Sbjct: 130 AAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVM 189
Query: 156 IVGVSNLLLNANLNSLFQGLNRLSP 180
G ++ + + + F + +
Sbjct: 190 FAGAADTPITPIVVACFDAIRATTA 214
>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 194
Score = 49.6 bits (117), Expect = 5e-08
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 180 PDGKTRSFDHLANGYARSEGIVVLLLQRSETALR 213
PD FD A GY EG +L+L+ S A
Sbjct: 2 PDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEA 35
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 29.5 bits (66), Expect = 0.27
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 104 LLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISE 149
L V L+ L + G ++ ++ +VL AV+ IS+
Sbjct: 144 LAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVLAGAVRGISD 189
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 29.5 bits (66), Expect = 0.33
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 104 LLAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISE 149
L L+ L + + ++ +++ EVL VQ I++
Sbjct: 144 LRESCDTLIVIPNDRLLQMGDAAVSLMDAFRSADEVLLNGVQGITD 189
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 28.0 bits (62), Expect = 0.96
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 107 HVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISE 149
HV L+ L + I +++ E L Q V+ ISE
Sbjct: 146 HVDTLIKISNNKLMEELPRDVKIKDAFLKADETLHQGVKGISE 188
>d3caoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio africanus
[TaxId: 873]}
Length = 103
Score = 25.9 bits (56), Expect = 2.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 217 EVLHAESRFYGSLERPFVGFN 237
++ H + +G LERP FN
Sbjct: 3 DMTHVPTDAFGKLERPAAVFN 23
>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640
{Mycobacterium leprae [TaxId: 1769]}
Length = 297
Score = 26.3 bits (57), Expect = 3.9
Identities = 31/193 (16%), Positives = 53/193 (27%), Gaps = 25/193 (12%)
Query: 48 LDPLVRCFIEPCFEAILDAGINPKSLAGSNSSVYTNSCISDDESLGCDERLTTNF---WL 104
D + + +G +S Y + D+ + L
Sbjct: 78 FDTYFNNAVIDGIRQFVILA------SGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTL 131
Query: 105 LAHVRCLLANRIAYLFDLKGPSFTIDNSWTGGIEVLRQAVQDISEGRVDTAIV--GVSNL 162
H A+R DL W LR A D S TA + G+
Sbjct: 132 AEHGVTPTADRREVPIDL-------RQDW---PPALRSAGFDPSAR---TAWLAEGLLMY 178
Query: 163 LLNANLNSLFQGLNRLSPDGKTRSFDHLANGYARSEGIVVLLLQRSETALRSYGEVLHAE 222
L + LF + LS G + + + + + L R + + + + +
Sbjct: 179 LPATAQDGLFTEIGGLSAVGSRIAVET-SPLHGDEWREQMQLRFRRVSDALGFEQAVDVQ 237
Query: 223 SRFYGSLERPFVG 235
Y R V
Sbjct: 238 ELIYHDENRAVVA 250
>d1wv3a1 b.26.1.4 (A:1-78) Protein EssC {Staphylococcus aureus
[TaxId: 1280]}
Length = 78
Score = 24.7 bits (53), Expect = 4.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 206 QRSETALRSYGEVLHAESRFYGSLERPFVGFNQ 238
+R++ L+S GEV+H E G+ + N+
Sbjct: 29 ERADITLKSLGEVIHLEQNNQGTWQANHTSINK 61
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus
aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Length = 106
Score = 24.8 bits (54), Expect = 5.7
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 197 SEGIVVLLLQRSETALRSYGEVLHAESRF 225
S V ++R+ + Y + L +F
Sbjct: 47 SRQAVYDNIRRTGDLVEDYEKKLELYQKF 75
>d2fhfa4 b.71.1.1 (A:966-1083) Pullulanase PulA {Klebsiella
pneumoniae [TaxId: 573]}
Length = 118
Score = 24.7 bits (54), Expect = 6.7
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 28 QTITKFDQTFFSLHSRLANVLDPLVR 53
+T+ F T L + D +
Sbjct: 55 RTLQDFAGTSLQLSAIQQAAGDRSLA 80
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus
pyogenes [TaxId: 1314]}
Length = 106
Score = 24.0 bits (52), Expect = 9.9
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 186 SFDHLANGYARSEGIVVLLLQRSETALRSYGEVLHAESRF 225
S +A+ + S V ++R+E L +Y LH S +
Sbjct: 34 SLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHMYSDY 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.400
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 962,627
Number of extensions: 41814
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 22
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)