BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4746
         (314 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
           Thermotoga Maritima
          Length = 385

 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 255 GINSWVYDGKGNAYI 269
           G  SW+YD KGNAY+
Sbjct: 17  GKGSWIYDEKGNAYL 31


>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
           2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
           1.40 A Resolution
 pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
           2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
           1.40 A Resolution
          Length = 397

 Score = 27.7 bits (60), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 255 GINSWVYDGKGNAYI 269
           G  SW+YD KGNAY+
Sbjct: 29  GKGSWIYDEKGNAYL 43


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.143    0.477 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,666,796
Number of Sequences: 62578
Number of extensions: 391042
Number of successful extensions: 948
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 2
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.3 bits)