Query psy4746
Match_columns 314
No_of_seqs 246 out of 1537
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 16:35:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03192 Voltage-dependent pot 100.0 1.6E-41 3.4E-46 344.7 16.9 231 80-314 50-298 (823)
2 KOG0498|consensus 100.0 2.2E-40 4.8E-45 320.7 19.3 232 81-314 67-342 (727)
3 KOG0499|consensus 100.0 4.7E-39 1E-43 296.0 17.1 232 82-314 218-450 (815)
4 KOG0501|consensus 100.0 5.3E-39 1.1E-43 295.2 14.9 227 81-314 207-471 (971)
5 KOG0500|consensus 100.0 1.1E-38 2.4E-43 289.2 9.4 214 99-314 4-230 (536)
6 KOG0500|consensus 99.9 3.6E-23 7.7E-28 188.6 1.7 152 10-179 202-363 (536)
7 KOG0499|consensus 99.8 1.1E-21 2.5E-26 181.7 6.0 155 11-179 423-583 (815)
8 KOG3713|consensus 99.8 5.5E-18 1.2E-22 155.8 11.9 170 122-312 238-423 (477)
9 KOG1545|consensus 99.5 5.6E-15 1.2E-19 130.4 1.9 166 125-312 254-439 (507)
10 KOG4390|consensus 99.4 3.4E-14 7.4E-19 126.6 1.4 266 21-312 110-402 (632)
11 PF00520 Ion_trans: Ion transp 99.4 2.5E-13 5.4E-18 114.6 4.7 173 129-313 2-198 (200)
12 KOG1419|consensus 99.3 6.1E-12 1.3E-16 116.9 7.0 182 123-313 124-316 (654)
13 PF07885 Ion_trans_2: Ion chan 99.1 3.2E-10 6.8E-15 81.8 8.2 69 234-313 2-71 (79)
14 KOG0498|consensus 98.7 3.8E-09 8.2E-14 104.0 1.1 165 5-181 309-477 (727)
15 KOG1420|consensus 98.7 5.8E-09 1.3E-13 97.8 2.0 110 198-312 222-334 (1103)
16 PF08412 Ion_trans_N: Ion tran 98.6 2E-08 4.4E-13 70.9 3.1 56 60-118 18-73 (77)
17 PRK10537 voltage-gated potassi 98.6 4.7E-07 1E-11 84.6 10.4 48 266-313 167-215 (393)
18 PLN03192 Voltage-dependent pot 98.0 2.2E-06 4.7E-11 88.2 1.1 154 10-178 270-429 (823)
19 PF01007 IRK: Inward rectifier 97.8 0.00016 3.4E-09 66.3 10.4 87 227-313 38-133 (336)
20 KOG1418|consensus 97.1 0.00026 5.6E-09 66.8 2.4 47 267-313 115-162 (433)
21 KOG3684|consensus 96.6 0.0059 1.3E-07 56.8 6.9 75 233-313 258-334 (489)
22 KOG0501|consensus 96.2 0.0057 1.2E-07 58.6 4.5 80 10-89 443-526 (971)
23 KOG4404|consensus 96.1 0.0051 1.1E-07 54.8 3.1 46 267-312 186-240 (350)
24 KOG2302|consensus 95.7 0.043 9.4E-07 55.8 8.0 85 83-178 1106-1200(1956)
25 KOG3827|consensus 95.6 0.06 1.3E-06 49.3 8.2 89 225-313 64-161 (400)
26 KOG3193|consensus 94.6 0.034 7.4E-07 53.0 3.7 125 172-306 127-257 (1087)
27 KOG4404|consensus 93.9 0.0047 1E-07 55.1 -3.3 39 267-305 80-119 (350)
28 KOG2301|consensus 93.6 0.26 5.6E-06 53.8 8.2 141 95-249 843-984 (1592)
29 KOG1418|consensus 93.1 0.011 2.3E-07 55.8 -2.7 46 267-312 242-296 (433)
30 KOG2301|consensus 89.0 1.7 3.6E-05 47.8 8.5 96 127-237 476-575 (1592)
31 PF00060 Lig_chan: Ligand-gate 80.4 1 2.2E-05 35.6 1.7 49 265-313 42-90 (148)
32 PF00520 Ion_trans: Ion transp 65.7 19 0.00041 29.3 6.0 53 196-250 67-123 (200)
33 TIGR00934 2a38euk potassium up 54.1 70 0.0015 33.0 8.4 70 221-290 445-514 (800)
34 KOG2302|consensus 42.6 64 0.0014 34.1 6.1 77 94-181 81-159 (1956)
35 TIGR00933 2a38 potassium uptak 41.3 1.1E+02 0.0025 28.6 7.5 41 266-306 230-273 (390)
36 PF07077 DUF1345: Protein of u 39.0 2E+02 0.0043 23.9 7.7 51 263-313 128-179 (180)
37 PF13314 DUF4083: Domain of un 33.2 54 0.0012 21.7 2.7 37 26-62 18-57 (58)
38 KOG1054|consensus 32.7 27 0.00058 34.5 1.7 43 267-309 595-637 (897)
39 PRK10750 potassium transporter 29.6 1.2E+02 0.0025 29.6 5.6 43 264-306 301-346 (483)
40 TIGR00870 trp transient-recept 28.1 3.5E+02 0.0075 27.8 9.1 27 224-250 504-531 (743)
41 KOG3713|consensus 26.4 1.6E+02 0.0034 28.5 5.6 19 195-213 314-332 (477)
42 COG2443 Sss1 Preprotein transl 24.0 71 0.0015 21.8 2.1 32 9-41 25-56 (65)
43 KOG4440|consensus 23.7 2.7E+02 0.0059 28.0 6.7 76 234-309 576-656 (993)
44 TIGR00934 2a38euk potassium up 23.6 2E+02 0.0043 29.8 6.1 74 230-307 586-662 (800)
45 PF06019 Phage_30_8: Phage GP3 23.5 6.6 0.00014 29.5 -3.2 31 8-38 39-78 (123)
46 TIGR00933 2a38 potassium uptak 23.1 6.3E+02 0.014 23.6 9.6 44 266-309 127-177 (390)
47 PRK09400 secE preprotein trans 22.2 79 0.0017 21.2 2.1 33 8-41 23-55 (61)
48 TIGR00327 secE_euk_arch protei 21.6 84 0.0018 21.1 2.1 33 8-41 19-51 (61)
49 PF02386 TrkH: Cation transpor 20.5 3.8E+02 0.0083 24.6 7.1 38 268-305 295-339 (354)
No 1
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.6e-41 Score=344.67 Aligned_cols=231 Identities=23% Similarity=0.399 Sum_probs=198.2
Q ss_pred cceeecCCcchhHHHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEecC--CeEE
Q psy4746 80 TWEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDD--GFWI 157 (314)
Q Consensus 80 ~~~~i~p~s~~~~~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~--g~iv 157 (314)
.+++|+|.|++++.||.++++.++|+++++|++++|..... ...+..+|.++|++|++|+++ +|+++|+++ +.+|
T Consensus 50 ~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~--~~~~~~~d~i~~~~F~iDi~l-~f~~ay~d~~~~~lV 126 (823)
T PLN03192 50 DGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASP--KRGLEIADNVVDLFFAVDIVL-TFFVAYIDPRTQLLV 126 (823)
T ss_pred CCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCCC--CCCeeeHHHHHHHHHHHHHHh-heeEEEEeCCCcEEE
Confidence 35599999999999999999999999999999999964322 224668899999999999997 899999974 4799
Q ss_pred echHHHHHHHHhcccchhhhcccchhHHHHHhhccc------cceeeehhhhhHhHHHHHHHHHHHhhhh-HHHHHHHHH
Q psy4746 158 KDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFE------CTFLRLPRLIKIQTFWEFCNHFDSVLAS-PYVVRVART 230 (314)
Q Consensus 158 ~~~~~i~~~Yi~~~~f~~Dlis~lP~~~~~~~~~~~------~~~lrl~rllr~~r~~~~~~~l~~~~~~-~~~~~l~~l 230 (314)
.|+++|+++|+++ ||++|++|++|++.+....... ..++|++|++|+.|+.++++++++.... ...++++|+
T Consensus 127 ~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kl 205 (823)
T PLN03192 127 RDRKKIAVRYLST-WFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARL 205 (823)
T ss_pred eCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999998 9999999999999875433221 1466777888888888888888876553 346799999
Q ss_pred HHHHHHHHHHHHHHhHHhHhhccCCCCccccc--------CchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHH
Q psy4746 231 LTYMIYLVHLNACAYYEISVREGLGINSWVYD--------GKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSW 301 (314)
Q Consensus 231 ~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~--------~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~ 301 (314)
++.+++++||+||+||+++.....++++|+.. +++.+|+.|+|||++||||||| |++|.|..|+++++++|
T Consensus 206 i~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~m 285 (823)
T PLN03192 206 LSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYM 285 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHH
Confidence 99999999999999999997655556789853 5688999999999999999995 99999999999999999
Q ss_pred HHHHHHhhhhccC
Q psy4746 302 LLGVFVFAVLIGQ 314 (314)
Q Consensus 302 l~G~~~~a~iiG~ 314 (314)
++|++++|+++|+
T Consensus 286 l~g~~~~a~~ig~ 298 (823)
T PLN03192 286 LFNLGLTAYLIGN 298 (823)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999985
No 2
>KOG0498|consensus
Probab=100.00 E-value=2.2e-40 Score=320.74 Aligned_cols=232 Identities=22% Similarity=0.360 Sum_probs=196.0
Q ss_pred ceeecCCcchhHHHHHHHHHHHHHHhhheeeeeeecccccC-------CchhhhhHHHHHHHHHHHHHhhccceeEEec-
Q psy4746 81 WEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRS-------NLITWFVFDYVMDVIYILDLLLIKPRLIYLD- 152 (314)
Q Consensus 81 ~~~i~p~s~~~~~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~-------~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~- 152 (314)
.++++|+|+++..||.++++.++|++++.|+.++|.....+ ....+.+++.+.|+.|++||++ +|+|+|..
T Consensus 67 ~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL-~Frtayv~~ 145 (727)
T KOG0498|consen 67 KWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVL-NFRTAYVDP 145 (727)
T ss_pred ceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHH-hheEEEECC
Confidence 34999999999999999999999999999999999865421 2245678999999999999998 99999997
Q ss_pred CC-eEEechHHHHHHHHhcccchhhhcccchhHHHHHhhc------cc-----cceeeehhhhhHhHHHHHHHHHHHhhh
Q psy4746 153 DG-FWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFG------FE-----CTFLRLPRLIKIQTFWEFCNHFDSVLA 220 (314)
Q Consensus 153 ~g-~iv~~~~~i~~~Yi~~~~f~~Dlis~lP~~~~~~~~~------~~-----~~~lrl~rllr~~r~~~~~~~l~~~~~ 220 (314)
++ ++|.||++|+++|+++ ||++|++|++|++.+..+.. .. ..++.+.|+.|+.|+.+.++++++...
T Consensus 146 ~s~elV~dpk~IA~rYl~t-wFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~ 224 (727)
T KOG0498|consen 146 SSYELVDDPKKIAKRYLKT-WFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTG 224 (727)
T ss_pred CCceeeeCHHHHHHHHHhh-hHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34 5999999999999998 99999999999999976533 11 145667777788888888888887654
Q ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHhHHhHhhcc--CCCC-ccccc-----------------CchhHHHHHHHHHHH
Q psy4746 221 S---PYVVRVARTLTYMIYLVHLNACAYYEISVREG--LGIN-SWVYD-----------------GKGNAYIRCFYFATK 277 (314)
Q Consensus 221 ~---~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~--~~~~-~W~~~-----------------~~~~~Y~~s~ywa~~ 277 (314)
. ..+.-..++++..++++||.||+||+++..+. ...+ +|... +++.+|++|+||+++
T Consensus 225 ~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~ 304 (727)
T KOG0498|consen 225 FVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLS 304 (727)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHHhh
Confidence 2 22344779999999999999999999998665 2334 77652 346799999999999
Q ss_pred HhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhccC
Q psy4746 278 TATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ 314 (314)
Q Consensus 278 t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG~ 314 (314)
||||+|| |.+|.|..|++|+|++|++|.++||++|||
T Consensus 305 tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGN 342 (727)
T KOG0498|consen 305 TLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGN 342 (727)
T ss_pred HhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhh
Confidence 9999995 999999999999999999999999999998
No 3
>KOG0499|consensus
Probab=100.00 E-value=4.7e-39 Score=296.01 Aligned_cols=232 Identities=47% Similarity=0.978 Sum_probs=224.5
Q ss_pred eeecCCc-chhHHHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEech
Q psy4746 82 EQQHTLG-YWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDS 160 (314)
Q Consensus 82 ~~i~p~s-~~~~~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~ 160 (314)
..+||+. +++..|.+++.++..||++.+|++.+|++.+.++...|.+.|+.||+++++|+++.+-+..|..+|.+|.+.
T Consensus 218 ~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~k 297 (815)
T KOG0499|consen 218 NSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDK 297 (815)
T ss_pred cccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEec
Confidence 4789998 899999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHHhcccchhhhcccchhHHHHHhhccccceeeehhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy4746 161 KLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHL 240 (314)
Q Consensus 161 ~~i~~~Yi~~~~f~~Dlis~lP~~~~~~~~~~~~~~lrl~rllr~~r~~~~~~~l~~~~~~~~~~~l~~l~~~~l~~~H~ 240 (314)
+..++||+++..|.+|++|++|++++++.+|.+ +++|++|++|+-.+++++..++..+.+++++|+++...++++++|+
T Consensus 298 ndtrk~Yl~sr~FklDllsiLPldllY~~~G~~-p~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHi 376 (815)
T KOG0499|consen 298 NDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFN-PMWRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHI 376 (815)
T ss_pred hHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccc-hhhhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhh
Confidence 999999999988999999999999999999987 5669999999999999999999999999999999999999999999
Q ss_pred HHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCCCCCCCChhhHHHHHHHHHHHHHHhhhhccC
Q psy4746 241 NACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ 314 (314)
Q Consensus 241 ~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~di~p~t~~E~~~~i~~~l~G~~~~a~iiG~ 314 (314)
.||+||+.+.+++.+.+.|++++.+..|++|+|||+.|++|+|+...|+|..|.+|..+--+.|+++||.+||+
T Consensus 377 nacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQ 450 (815)
T KOG0499|consen 377 NACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIGGLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQ 450 (815)
T ss_pred hHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
No 4
>KOG0501|consensus
Probab=100.00 E-value=5.3e-39 Score=295.19 Aligned_cols=227 Identities=24% Similarity=0.481 Sum_probs=189.9
Q ss_pred ceeecCCcchhHHHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEe-cCCeEEec
Q psy4746 81 WEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYL-DDGFWIKD 159 (314)
Q Consensus 81 ~~~i~p~s~~~~~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~-~~g~iv~~ 159 (314)
.+++-.++.++-+||+++++..+|.++.+|+.++|......+ ..|..+|-+.|++|++||+| +|+|.|. |+|+++.|
T Consensus 207 PHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~-vs~lvvDSiVDVIF~vDIvL-NFHTTFVGPgGEVvsd 284 (971)
T KOG0501|consen 207 PHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNN-VSWLVVDSIVDVIFFVDIVL-NFHTTFVGPGGEVVSD 284 (971)
T ss_pred CeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCc-eeEEEecchhhhhhhhhhhh-hcceeeecCCCceecC
Confidence 457888999999999999999999999999999998665433 35778999999999999998 8999998 58999999
Q ss_pred hHHHHHHHHhcccchhhhcccchhHHHHHhhcccc------ceeeehhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4746 160 SKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFEC------TFLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTY 233 (314)
Q Consensus 160 ~~~i~~~Yi~~~~f~~Dlis~lP~~~~~~~~~~~~------~~lrl~rllr~~r~~~~~~~l~~~~~~~~~~~l~~l~~~ 233 (314)
|+.|+.+|+|+ ||++|++|++|+|++...-..+. +.|++.||||+-|+ .++++.+..+. ...++.++..
T Consensus 285 PkvIRmNYlKs-WFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRV---aRKLD~YlEYG-AA~LvLLlC~ 359 (971)
T KOG0501|consen 285 PKVIRMNYLKS-WFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRV---ARKLDHYLEYG-AAVLVLLLCV 359 (971)
T ss_pred hhHHhHHHHHH-HHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh-HHHHHHHHHH
Confidence 99999999999 99999999999999875433332 45566666666555 45555555543 4456667777
Q ss_pred HHHHHHHHHHHhHHhHhhccC-------CCCccccc-----------------------CchhHHHHHHHHHHHHhhccC
Q psy4746 234 MIYLVHLNACAYYEISVREGL-------GINSWVYD-----------------------GKGNAYIRCFYFATKTATSIG 283 (314)
Q Consensus 234 ~l~~~H~~aC~~~~i~~~~~~-------~~~~W~~~-----------------------~~~~~Y~~s~ywa~~t~ttvG 283 (314)
+.+++||.||+||.||.++.. ..++|+.+ +....|+.|+||.++.|||||
T Consensus 360 y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvG 439 (971)
T KOG0501|consen 360 YGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVG 439 (971)
T ss_pred HHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhccc
Confidence 889999999999999996543 24689741 234689999999999999999
Q ss_pred -CCCCCCChhhHHHHHHHHHHHHHHhhhhccC
Q psy4746 284 -KNPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ 314 (314)
Q Consensus 284 -~di~p~t~~E~~~~i~~~l~G~~~~a~iiG~ 314 (314)
|+|.|.|+.|++|++++|++|.++||.++||
T Consensus 440 FGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~ 471 (971)
T KOG0501|consen 440 FGNIAPNTDNEKIFGVCMMIIGALLYATIFGH 471 (971)
T ss_pred ccccCCCccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999999996
No 5
>KOG0500|consensus
Probab=100.00 E-value=1.1e-38 Score=289.23 Aligned_cols=214 Identities=36% Similarity=0.709 Sum_probs=199.5
Q ss_pred HHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhcccchhhhc
Q psy4746 99 TLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLL 178 (314)
Q Consensus 99 ~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~~f~~Dli 178 (314)
.+.++||++.++.+.+|+.....+...|..+|+.+|.+|++|+++ +.+++|+++|..|+|-++.++||.++..|.+|++
T Consensus 4 s~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v-~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l 82 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIV-RSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVL 82 (536)
T ss_pred EEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhh
Confidence 456789999999999998777777778999999999999999986 8999999999999999999999999989999999
Q ss_pred ccchhHHHHHhhccccceeeehhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhccCCCCc
Q psy4746 179 SLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINS 258 (314)
Q Consensus 179 s~lP~~~~~~~~~~~~~~lrl~rllr~~r~~~~~~~l~~~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~~ 258 (314)
|++|+|++.+..++. .+.|++|++|+.|+++++++-++++.+|+++|+.+++.+.++++||.||++|+++...+.+.++
T Consensus 83 ~liP~D~l~~~~~~~-~~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~ 161 (536)
T KOG0500|consen 83 SLIPLDLLLFKDGSA-SLERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDD 161 (536)
T ss_pred hhcchhHHhhcCCcc-hHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccc
Confidence 999999998766655 6888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC-------------chhHHHHHHHHHHHHhhccCCCCCCCChhhHHHHHHHHHHHHHHhhhhccC
Q psy4746 259 WVYDG-------------KGNAYIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ 314 (314)
Q Consensus 259 W~~~~-------------~~~~Y~~s~ywa~~t~ttvG~di~p~t~~E~~~~i~~~l~G~~~~a~iiG~ 314 (314)
|+++. -.++|+.|+|||..|+||+|.-+.|.|+.|..|.++-.++|+++||.++||
T Consensus 162 wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~ 230 (536)
T KOG0500|consen 162 WVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGN 230 (536)
T ss_pred cccCCccCccccccchhHHHHHHHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhcc
Confidence 99852 247999999999999999999899999999999999999999999999997
No 6
>KOG0500|consensus
Probab=99.86 E-value=3.6e-23 Score=188.55 Aligned_cols=152 Identities=15% Similarity=0.277 Sum_probs=126.9
Q ss_pred hcccchhhhHHHHhhhhhhHh----hhhcchhHHHHhhhChHHHHHhHHHHHHHhHHhCCCchhhhcccccccccceeec
Q psy4746 10 LTSVNNWELSTCYQRWLTPFH----YCSQIRDIIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQH 85 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~----~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~w~~~~~~~i~ 85 (314)
-+|+|+.||+|+++++|+||+ |+||++|+++|+|+++++||++||++|.||+.+++|+.+|.|+.+|++|.|..-.
T Consensus 202 P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~ 281 (536)
T KOG0500|consen 202 PPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKK 281 (536)
T ss_pred CCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc
Confidence 379999999999999999999 7999999999999999999999999999999999999999999999999998665
Q ss_pred CCcchhHHHHHHHHHHHHHHhhheeeeeeecc------cccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEec
Q psy4746 86 TLGYWYISWLCLVTLSYLYNCFVIPLRVTFPY------QTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKD 159 (314)
Q Consensus 86 p~s~~~~~Wd~~~~~~~i~~~~~~p~~i~f~~------~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~ 159 (314)
-.++-... -.+|-++.-+. ++..+++.++ .||.-|+.|++++..+..|.|+|++|++
T Consensus 282 ~~DEeevl-------------~~LP~kL~aeIA~nvh~dTLkkV~iF~----~ce~~lL~elVLklk~qvfSPgDyICrK 344 (536)
T KOG0500|consen 282 IVDEEEVL-------------KLLPDKLKAEIAINVHLDTLKKVRIFQ----DCEAGLLVELVLKLKPQVFSPGDYICRK 344 (536)
T ss_pred cccHHHHH-------------HhCCHHHHhHhHHHHHHHHHHhhhHHH----hcchhHHHHHHHHhcceeeCCCCeEEec
Confidence 55544311 12343322222 2223344444 7999999999999899999999999999
Q ss_pred hHHHHHHHHhcccchhhhcc
Q psy4746 160 SKLTRIQYRRKLQYKNDLLS 179 (314)
Q Consensus 160 ~~~i~~~Yi~~~~f~~Dlis 179 (314)
++..++||+.+ .+.+.+++
T Consensus 345 GdvgkEMyIVk-~G~L~Vv~ 363 (536)
T KOG0500|consen 345 GDVGKEMYIVK-EGKLAVVA 363 (536)
T ss_pred CcccceEEEEE-ccEEEEEe
Confidence 99999999998 88887775
No 7
>KOG0499|consensus
Probab=99.84 E-value=1.1e-21 Score=181.65 Aligned_cols=155 Identities=24% Similarity=0.428 Sum_probs=129.6
Q ss_pred cccchhhhHHHHhhhhhhHh----hhhcchhHHHHhhhChHHHHHhHHHHHHHhHHhCCCchhhhcccccccccceeecC
Q psy4746 11 TSVNNWELSTCYQRWLTPFH----YCSQIRDIIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQHT 86 (314)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~----~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~w~~~~~~~i~p 86 (314)
.|.|-.||+|++.+|+.||+ .+|||||+|+++++++++||++||.+.+||+++++|++.|+|++.||.|.|...+.
T Consensus 423 ~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~ 502 (815)
T KOG0499|consen 423 EPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRM 502 (815)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhcc
Confidence 58999999999999999999 59999999999999999999999999999999999999999999999999998777
Q ss_pred CcchhHHHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHH--HHHHHHHHHHhhccceeEEecCCeEEechHHHH
Q psy4746 87 LGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDY--VMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTR 164 (314)
Q Consensus 87 ~s~~~~~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~--~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~ 164 (314)
.++-..+ -.+|..+..+.....+......+++ .||-.++.|++++...+.|.|+|.+|++++.++
T Consensus 503 LDEs~ll-------------~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGk 569 (815)
T KOG0499|consen 503 LDESDLL-------------KTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGK 569 (815)
T ss_pred ccHHHHH-------------HhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccc
Confidence 6665422 1344433333222223333333333 699999999999999999999999999999999
Q ss_pred HHHHhcccchhhhcc
Q psy4746 165 IQYRRKLQYKNDLLS 179 (314)
Q Consensus 165 ~~Yi~~~~f~~Dlis 179 (314)
+||+.+ .+.+.+++
T Consensus 570 EMYIIk-~GqvQVlG 583 (815)
T KOG0499|consen 570 EMYIIK-HGQVQVLG 583 (815)
T ss_pred eeEEee-cceEEEec
Confidence 999998 88888875
No 8
>KOG3713|consensus
Probab=99.75 E-value=5.5e-18 Score=155.80 Aligned_cols=170 Identities=18% Similarity=0.226 Sum_probs=118.7
Q ss_pred CchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhcccchhhhcccchhHHHHHh--hccc-c----
Q psy4746 122 NLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFV--FGFE-C---- 194 (314)
Q Consensus 122 ~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~~f~~Dlis~lP~~~~~~~--~~~~-~---- 194 (314)
..+.+..+|.+|-+.|.+|++++ +.. . .-+.++++++--++|++|++||++-... .+.+ .
T Consensus 238 ~~p~l~~vE~vCi~WFT~E~llR-~~~----------~--P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~ 304 (477)
T KOG3713|consen 238 PHPILTYVETVCIAWFTFEYLLR-FLV----------A--PNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELE 304 (477)
T ss_pred CCCchHHHHHHHHHHHHHHHHHH-HHc----------C--chHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHh
Confidence 34457789999999999999874 322 1 1257889988899999999999865432 2211 1
Q ss_pred ---ceeeehhhhhHhHHHHH---HHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhccCCCCcccccCchh
Q psy4746 195 ---TFLRLPRLIKIQTFWEF---CNHFDSVL--ASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGN 266 (314)
Q Consensus 195 ---~~lrl~rllr~~r~~~~---~~~l~~~~--~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~ 266 (314)
..+|++|++|+.|+++. ..-++..- -....-++.-+++.+.+.+-.+|.+-|++...+...+ .+
T Consensus 305 ~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~--------Ft 376 (477)
T KOG3713|consen 305 NAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTK--------FT 376 (477)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--------Cc
Confidence 23444444444444443 32333221 1223445566666667777788888887777554221 35
Q ss_pred HHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhc
Q psy4746 267 AYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLI 312 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~ii 312 (314)
..-.|+|||++||||||| |++|.|..+++++..+++.|+++.|..|
T Consensus 377 SIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPI 423 (477)
T KOG3713|consen 377 SIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPI 423 (477)
T ss_pred cccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcch
Confidence 566889999999999996 9999999999999999999999999875
No 9
>KOG1545|consensus
Probab=99.50 E-value=5.6e-15 Score=130.41 Aligned_cols=166 Identities=16% Similarity=0.247 Sum_probs=106.9
Q ss_pred hhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhcccchhhhcccchhHHHHHh-----hccc------
Q psy4746 125 TWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFV-----FGFE------ 193 (314)
Q Consensus 125 ~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~~f~~Dlis~lP~~~~~~~-----~~~~------ 193 (314)
.+.+++..|-++|..|+++ +|..+-. | .-+.++-.-++|++|++|+.+-... .|..
T Consensus 254 PFFiVEt~CIiWFtfEllv-Rf~aCPs---------K---~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqa 320 (507)
T KOG1545|consen 254 PFFIVETLCIIWFTFELLV-RFFACPS---------K---ATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQA 320 (507)
T ss_pred chHhHHHHHHHHHhHHHHH-HHhcCcc---------H---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhh
Confidence 5678999999999999987 4443211 1 2233333459999999999664321 1111
Q ss_pred --cceeeehhhhhHhHHHHHHH------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhccCCCCcccccCch
Q psy4746 194 --CTFLRLPRLIKIQTFWEFCN------HFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKG 265 (314)
Q Consensus 194 --~~~lrl~rllr~~r~~~~~~------~l~~~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~ 265 (314)
...||++||.|++|+++..+ .+.+-. ....-++..|++.+++..-+++..-|.... ..++|- .
T Consensus 321 MSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl-~aSmrElgLLIFFlfIgviLFsSavYFAEa---de~~S~-----F 391 (507)
T KOG1545|consen 321 MSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTL-RASMRELGLLIFFLFIGVILFSSAVYFAEA---DEPESH-----F 391 (507)
T ss_pred hhHHHHHHHHHHHHhhheeeccccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhceeeeeec---CCCccC-----C
Confidence 14677777777777665332 222222 233445555555555555555544443222 112222 2
Q ss_pred hHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhc
Q psy4746 266 NAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLI 312 (314)
Q Consensus 266 ~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~ii 312 (314)
...-+|||||++||||||| |+.|.|..++++..+|.+.|++..|..+
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPV 439 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPV 439 (507)
T ss_pred CcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccc
Confidence 4455899999999999996 9999999999999999999999888654
No 10
>KOG4390|consensus
Probab=99.42 E-value=3.4e-14 Score=126.61 Aligned_cols=266 Identities=15% Similarity=0.220 Sum_probs=152.7
Q ss_pred HHhhhhhhHhhhhcchhHHHHh------hhChHHHHHhHHHH-HHHhHHhCCCchhhhcccccccccceeecCCcc----
Q psy4746 21 CYQRWLTPFHYCSQIRDIIATA------TKGQTEYRKLMDET-LDYLRRLNVPPRIRERVKQWFSFTWEQQHTLGY---- 89 (314)
Q Consensus 21 ~~~~~~~~~~~~g~i~~~i~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~w~~~~~~~i~p~s~---- 89 (314)
|+..|.-...+.|-+.++|++- ++.|++-++.+|+. .+.-..-..|..+.-|.+.|.. .-+|...
T Consensus 110 Ci~AyDeELaF~Gl~PeligDCCyEeYkDrkrENaERL~dd~~~e~ag~~~~p~~ls~rq~mWrA----FENPHTst~AL 185 (632)
T KOG4390|consen 110 CISAYDEELAFYGLVPELIGDCCYEEYKDRKRENAERLQDDEDAENAGGPALPAGLSLRQRMWRA----FENPHTSTAAL 185 (632)
T ss_pred HHHHhhhhhhHhcccHHHHhhhhhHHHhhhhhhhHHHhhchhhhhhcCCCCCcccchHHHHHHHH----hcCCCcchhhh
Confidence 3444555556788889999873 22222222222211 1111112234434445555632 2344332
Q ss_pred -hhHHHHHHHHHHHHHHhhhe-eeeeeecc-----cccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHH
Q psy4746 90 -WYISWLCLVTLSYLYNCFVI-PLRVTFPY-----QTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKL 162 (314)
Q Consensus 90 -~~~~Wd~~~~~~~i~~~~~~-p~~i~f~~-----~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~ 162 (314)
+++.--+++.+.++-|.+.+ |..-.=.. -.+.+...++.+|..|-++|..|.+|+.+. .|.
T Consensus 186 VFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EYlLRL~a-----------APs- 253 (632)
T KOG4390|consen 186 VFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEYLLRLFA-----------APS- 253 (632)
T ss_pred hhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEeeHHHHHHHHc-----------Cch-
Confidence 33333455555555555432 33211110 011233346678889999999999886433 222
Q ss_pred HHHHHHhcccchhhhcccchhHHHHHhhcccc--------ceeeehhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4746 163 TRIQYRRKLQYKNDLLSLMPFDLLYFVFGFEC--------TFLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYM 234 (314)
Q Consensus 163 i~~~Yi~~~~f~~Dlis~lP~~~~~~~~~~~~--------~~lrl~rllr~~r~~~~~~~l~~~~~~~~~~~l~~l~~~~ 234 (314)
+-+++++-.-++|+++++|+++-......+. +.+|++|++|+.|-.+-++.+..-. .+-.-++.-+++.+
T Consensus 254 -R~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLRILGYTL-KSCASELGFLlFSL 331 (632)
T KOG4390|consen 254 -RYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTL-KSCASELGFLLFSL 331 (632)
T ss_pred -HHHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeecccccccchhhhhH-HHHHHHHhHHHHHH
Confidence 4566777667999999999965432222111 3344444444444333333333222 22334566667777
Q ss_pred HHHHHHHHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhc
Q psy4746 235 IYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLI 312 (314)
Q Consensus 235 l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~ii 312 (314)
.+.+-.+|-+.|+...... . ......-.|||+.++||||.|| |++|.|.++++|..+|.+.|+++.|..+
T Consensus 332 tMAIIIFATvMfYAEKg~~--a------t~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPV 402 (632)
T KOG4390|consen 332 TMAIIIFATVMFYAEKGSS--A------TKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPV 402 (632)
T ss_pred HHHHHHHHHHHHhhhcccc--c------cccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccc
Confidence 7777778887776554322 1 1224456899999999999996 9999999999999999999999988754
No 11
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.39 E-value=2.5e-13 Score=114.58 Aligned_cols=173 Identities=17% Similarity=0.302 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhcccchhhhcccchhHHHHHhh--ccc-----cceeeehh
Q psy4746 129 FDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVF--GFE-----CTFLRLPR 201 (314)
Q Consensus 129 i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~~f~~Dlis~lP~~~~~~~~--~~~-----~~~lrl~r 201 (314)
+|.+++.+|.+|+++ ++.+.... +++|++++|..+|+++++|........ +.. .+.+|++|
T Consensus 2 ~~~~~~~~f~~e~~l-~~~~~~~~-----------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (200)
T PF00520_consen 2 LEIIFDVIFILEIVL-RFFALGFK-----------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLR 69 (200)
T ss_dssp HHHHHHHHHHHHHHH-HHHTCCCG------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH-HHHHhccH-----------HHHHhcChhhcccccccccccccccccccccccccceEEEEEeec
Confidence 678999999999997 44432221 789999988889999999996554321 111 12333333
Q ss_pred hhhHhHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhccCCCCc-------ccc-cCchhHHHHH
Q psy4746 202 LIKIQTFWEFCNHFDSVLA--SPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINS-------WVY-DGKGNAYIRC 271 (314)
Q Consensus 202 llr~~r~~~~~~~l~~~~~--~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~~-------W~~-~~~~~~Y~~s 271 (314)
++|+.|+.+..+.+..... ....-++.+.+..++++.|..||+++.+.......... ... ++..+.|..|
T Consensus 70 ~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s 149 (200)
T PF00520_consen 70 LLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGES 149 (200)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhheeccccccccccccccccccccccccccccccc
Confidence 3333333333332222221 23456778888889999999999999887754422111 111 1235789999
Q ss_pred HHHHHHHhhccCC-CCCCC-----ChhhHHHH-HHHHHHHHHHhhhhcc
Q psy4746 272 FYFATKTATSIGK-NPRPT-----NEMEYVFM-TVSWLLGVFVFAVLIG 313 (314)
Q Consensus 272 ~ywa~~t~ttvG~-di~p~-----t~~E~~~~-i~~~l~G~~~~a~iiG 313 (314)
+||++.++|+.|+ |..|. +..|.++. ++..+.+.++++.++|
T Consensus 150 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nllia 198 (200)
T PF00520_consen 150 LYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIA 198 (200)
T ss_dssp HHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHh
Confidence 9999999999994 88776 88999999 6667777788888876
No 12
>KOG1419|consensus
Probab=99.28 E-value=6.1e-12 Score=116.88 Aligned_cols=182 Identities=15% Similarity=0.191 Sum_probs=109.5
Q ss_pred chhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhcccchhhhcccchhHHHHHhhccc-----ccee
Q psy4746 123 LITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFE-----CTFL 197 (314)
Q Consensus 123 ~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~~f~~Dlis~lP~~~~~~~~~~~-----~~~l 197 (314)
....+++|++.-++|.+|++.+.-..+.-.. ..++.++-+|.+++-.++|++.++-- +..+..+.. .+.+
T Consensus 124 ~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~r----YrG~~GRLrFarkp~cvIDiivi~As-i~vl~~g~qG~vfatSal 198 (654)
T KOG1419|consen 124 SGILYILEIVMIVFFGLEFIVRLWSAGCCCR----YRGWYGRLRFARKPFCVIDIIVIIAS-IAVLAAGSQGNVFATSAL 198 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccc----cccceeeEEeecCCceEEEEeeeeee-eeEEEecCccceeehhhh
Confidence 3456788999999999999874332222110 13455677888887889998854322 222223321 1445
Q ss_pred eehhhhhHhHHHHHHHH-----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhccCCCCcccccCchhHHHHHH
Q psy4746 198 RLPRLIKIQTFWEFCNH-----FDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCF 272 (314)
Q Consensus 198 rl~rllr~~r~~~~~~~-----l~~~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ 272 (314)
|-+|++.+.|+++.-.+ +.......+--+++.....-++..-..+-+-|+... ...+++ .++....|-+|+
T Consensus 199 rslRFlQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEK-d~~~e~---~n~~F~TyADAL 274 (654)
T KOG1419|consen 199 RSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEK-DAQGEG---TNDEFPTYADAL 274 (654)
T ss_pred hhhHHHHHHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccc---ccccchhHHHHH
Confidence 66666655555442211 111111222233433333333333333333333322 211110 123458999999
Q ss_pred HHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 273 YFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 273 ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
||.++|+||+|| |.+|+|..+++.+.++.++|+.+||..-|
T Consensus 275 WWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAG 316 (654)
T KOG1419|consen 275 WWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAG 316 (654)
T ss_pred HhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccc
Confidence 999999999996 99999999999999999999999998655
No 13
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.12 E-value=3.2e-10 Score=81.81 Aligned_cols=69 Identities=26% Similarity=0.536 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccC-CCCCCCChhhHHHHHHHHHHHHHHhhhhc
Q psy4746 234 MIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIG-KNPRPTNEMEYVFMTVSWLLGVFVFAVLI 312 (314)
Q Consensus 234 ~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG-~di~p~t~~E~~~~i~~~l~G~~~~a~ii 312 (314)
+++..+..|+.++.+.. + .+ ...|.+|+||+++|+||+| ||+.|+++.+|+++++.+++|..+++..+
T Consensus 2 ~~~~~l~~~~~~~~~~~--~--~~-------~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~ 70 (79)
T PF07885_consen 2 ILLLVLAFGAIFFYISE--G--SE-------KWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFL 70 (79)
T ss_dssp HHHHHHHHHHHHHHHTT--S--SS-------TTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeHHHHHHHHHHH--h--cc-------cCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHH
Confidence 45667778888887711 1 11 2468999999999999999 59999999999999999999999999877
Q ss_pred c
Q psy4746 313 G 313 (314)
Q Consensus 313 G 313 (314)
|
T Consensus 71 ~ 71 (79)
T PF07885_consen 71 S 71 (79)
T ss_dssp H
T ss_pred H
Confidence 5
No 14
>KOG0498|consensus
Probab=98.70 E-value=3.8e-09 Score=104.00 Aligned_cols=165 Identities=12% Similarity=0.080 Sum_probs=116.9
Q ss_pred cccchhcccchhhhHHHHhhhhhhHh----hhhcchhHHHHhhhChHHHHHhHHHHHHHhHHhCCCchhhhccccccccc
Q psy4746 5 HEQHCLTSVNNWELSTCYQRWLTPFH----YCSQIRDIIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFT 80 (314)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~w~~~~ 80 (314)
-.|.-.+|+++-|.+|.+..++.|.+ ++|||...++.+..+..+|+.++.+++++|+++++|+++++|+++++++.
T Consensus 309 vG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~k 388 (727)
T KOG0498|consen 309 VGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYK 388 (727)
T ss_pred ccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 34566799999999999999999998 79999999999999999999999999999999999999999999999887
Q ss_pred ceeecCCcchhHHHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEech
Q psy4746 81 WEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDS 160 (314)
Q Consensus 81 ~~~i~p~s~~~~~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~ 160 (314)
|..-+.-+.-...=++.--+-.=+. -.++++. ..+++.+. .+|--++--++.+...+.|.|++++++++
T Consensus 389 w~~t~Gvdee~lL~~LP~~LR~dI~-----~hL~~~l--v~~vpLF~----~md~~~L~al~~rlk~~~f~pge~iireG 457 (727)
T KOG0498|consen 389 WLATRGVDEEELLQSLPKDLRRDIK-----RHLCLDL--VRKVPLFA----GMDDGLLDALCSRLKPEYFTPGEYIIREG 457 (727)
T ss_pred HhhccCcCHHHHHHhCCHHHHHHHH-----HHHhHHH--HhhCchhh----cCCHHHHHHHHHHhhhhccCCCCeEEecC
Confidence 7653333322211111100000000 0000110 11233333 45666666677644444455688999999
Q ss_pred HHHHHHHHhcccchhhhcccc
Q psy4746 161 KLTRIQYRRKLQYKNDLLSLM 181 (314)
Q Consensus 161 ~~i~~~Yi~~~~f~~Dlis~l 181 (314)
+...++|+.- .+.+|.+..-
T Consensus 458 d~v~~myFI~-rG~le~~~~~ 477 (727)
T KOG0498|consen 458 DPVTDMYFIV-RGSLESITTD 477 (727)
T ss_pred CccceeEEEE-eeeEEEEEcc
Confidence 9999999987 8888887654
No 15
>KOG1420|consensus
Probab=98.69 E-value=5.8e-09 Score=97.76 Aligned_cols=110 Identities=18% Similarity=0.364 Sum_probs=69.9
Q ss_pred eehhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhccCCCCcccc--cCchhHHHHHHHHH
Q psy4746 198 RLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVY--DGKGNAYIRCFYFA 275 (314)
Q Consensus 198 rl~rllr~~r~~~~~~~l~~~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~--~~~~~~Y~~s~ywa 275 (314)
|++|-+|+..+.+..+.++-. +.++.+|+.+++..+..+ .+.|..+.-+.+.. .+.|-. ++..-.|..|.|+.
T Consensus 222 rflralrlmtvpdilqylnil-ktsssirl~qlvsifisv-wltaag~ihllens---gdp~~~f~n~hrltyw~cvyfl 296 (1103)
T KOG1420|consen 222 RFLRALRLMTVPDILQYLNIL-KTSSSIRLVQLVSIFISV-WLTAAGFIHLLENS---GDPWENFQNNHRLTYWECVYFL 296 (1103)
T ss_pred HHHHHHHhccHHHHHHHHHHH-hccchhhHHHHHHHHHHH-HHhhcceeehhhcC---CChhHhccCcccchhhheeeee
Confidence 344444444443333333322 334567888877644433 33333332222222 233421 22335799999999
Q ss_pred HHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhc
Q psy4746 276 TKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLI 312 (314)
Q Consensus 276 ~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~ii 312 (314)
++||+|||| |+..+|..++.|.+++++.|..+||--+
T Consensus 297 ~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyv 334 (1103)
T KOG1420|consen 297 MVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYV 334 (1103)
T ss_pred EEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhh
Confidence 999999996 9999999999999999999999998643
No 16
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.64 E-value=2e-08 Score=70.86 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=44.5
Q ss_pred hHHhCCCchhhhcccccccccceeecCCcchhHHHHHHHHHHHHHHhhheeeeeeeccc
Q psy4746 60 LRRLNVPPRIRERVKQWFSFTWEQQHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQ 118 (314)
Q Consensus 60 ~~~~~~~~~~~~r~~~w~~~~~~~i~p~s~~~~~Wd~~~~~~~i~~~~~~p~~i~f~~~ 118 (314)
.++.+.-+.+++|+++ ..+++|||+|.++.+||+++++.++++++++|+.++|..+
T Consensus 18 f~S~~ai~~E~~R~~~---~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d 73 (77)
T PF08412_consen 18 FGSKKAIEKEKERQRS---SGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSD 73 (77)
T ss_pred HccHHHHHHHHHHHhc---CCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecC
Confidence 3444444455566654 3456999999999999999999999999999999999754
No 17
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.55 E-value=4.7e-07 Score=84.64 Aligned_cols=48 Identities=29% Similarity=0.509 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 266 NAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 266 ~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
..+.+|+||+++|+||+|| |+.|.|..++++++++++.|+.++++.++
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is 215 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSIS 215 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577999999999999995 99999999999999999999999988654
No 18
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=97.97 E-value=2.2e-06 Score=88.19 Aligned_cols=154 Identities=13% Similarity=0.227 Sum_probs=100.4
Q ss_pred hcccchhhhHHHHhhhhhhHh----hhhcchhHHHHhhhChHHHHHhHHHHHHHhHHhCCCchhhhcccccccccceeec
Q psy4746 10 LTSVNNWELSTCYQRWLTPFH----YCSQIRDIIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQH 85 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~----~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~w~~~~~~~i~ 85 (314)
++|+|..|.+|+++.+++|++ ++|+|.+++.+.++.+.+|+++++...+||+++++|+++|+|+++++.+.|..-.
T Consensus 270 i~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~ 349 (823)
T PLN03192 270 LHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAES 349 (823)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcc
Confidence 579999999999999999988 6999999999999999999999999999999999999999999998766443110
Q ss_pred CCcchhHHHHHHHHHHH-HHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEe-cCCeEEechHHH
Q psy4746 86 TLGYWYISWLCLVTLSY-LYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYL-DDGFWIKDSKLT 163 (314)
Q Consensus 86 p~s~~~~~Wd~~~~~~~-i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~-~~g~iv~~~~~i 163 (314)
.+.....=++.-.+.. +..-...+. ....+.+. .++.-++.+++. .....++ +++.++.+++..
T Consensus 350 -~~~~~~l~~Lp~~Lr~~i~~~l~~~~--------l~~~~lF~----~~s~~~l~~L~~-~~~~~~~~pge~I~~qge~~ 415 (823)
T PLN03192 350 -LNQQQLIDQLPKSICKSICQHLFLPV--------VEKVYLFK----GVSREILLLLVT-KMKAEYIPPREDVIMQNEAP 415 (823)
T ss_pred -ccHHHHHHHcCHHHHHHHHHHHHHHH--------HhhCcchh----cCCHHHHHHHHH-hhheeeeCCCCEEEECCCCC
Confidence 1111100000000000 000000000 00111121 345566677765 4555555 466777887777
Q ss_pred HHHHHhcccchhhhc
Q psy4746 164 RIQYRRKLQYKNDLL 178 (314)
Q Consensus 164 ~~~Yi~~~~f~~Dli 178 (314)
...|+.. .+.++++
T Consensus 416 ~~lY~I~-~G~V~i~ 429 (823)
T PLN03192 416 DDVYIVV-SGEVEII 429 (823)
T ss_pred ceEEEEE-ecEEEEE
Confidence 7788866 6677665
No 19
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.82 E-value=0.00016 Score=66.26 Aligned_cols=87 Identities=23% Similarity=0.372 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHhhccC-C----CCcccc-cCchhHHHHHHHHHHHHhhccCC-C--CCCCChhhHHHH
Q psy4746 227 VARTLTYMIYLVHLNACAYYEISVREGL-G----INSWVY-DGKGNAYIRCFYFATKTATSIGK-N--PRPTNEMEYVFM 297 (314)
Q Consensus 227 l~~l~~~~l~~~H~~aC~~~~i~~~~~~-~----~~~W~~-~~~~~~Y~~s~ywa~~t~ttvG~-d--i~p~t~~E~~~~ 297 (314)
++-+++..++..-.+|++||+++...+. . +++|.. -.....+..+|+||+.|+||+|| . ++|......+..
T Consensus 38 l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~ 117 (336)
T PF01007_consen 38 LLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLV 117 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcchhHHHH
Confidence 3344455667777889999999875432 1 122221 12346899999999999999995 4 688888999999
Q ss_pred HHHHHHHHHHhhhhcc
Q psy4746 298 TVSWLLGVFVFAVLIG 313 (314)
Q Consensus 298 i~~~l~G~~~~a~iiG 313 (314)
.+-+++|.++.|.++|
T Consensus 118 ~~q~~~g~l~~a~~~G 133 (336)
T PF01007_consen 118 TIQSLVGLLLDAFMTG 133 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999887
No 20
>KOG1418|consensus
Probab=97.11 E-value=0.00026 Score=66.81 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 267 AYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
-+..|+|+|.+++||+|| ++.|.|..+|+++++..++|+-++..+++
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~ 162 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILA 162 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHH
Confidence 478999999999999995 99999999999999999999988876654
No 21
>KOG3684|consensus
Probab=96.61 E-value=0.0059 Score=56.84 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhHHhHhh-ccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhh
Q psy4746 233 YMIYLVHLNACAYYEISVR-EGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAV 310 (314)
Q Consensus 233 ~~l~~~H~~aC~~~~i~~~-~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~ 310 (314)
..+.+.-|+...|-+--+. +.... +....|+.|+|....|+.++|| |++|.|.-++..++++-++|+++-|.
T Consensus 258 ~vftl~~Wii~sW~~~~cER~~~~~------~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sal 331 (489)
T KOG3684|consen 258 LVFTLSLWIIASWMLRQCERYHDSQ------DVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSL 331 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcch------hhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHH
Confidence 3455666666666554332 22111 1336799999999999999996 99999999999999999999999888
Q ss_pred hcc
Q psy4746 311 LIG 313 (314)
Q Consensus 311 iiG 313 (314)
++.
T Consensus 332 lvA 334 (489)
T KOG3684|consen 332 LVA 334 (489)
T ss_pred HHH
Confidence 763
No 22
>KOG0501|consensus
Probab=96.24 E-value=0.0057 Score=58.57 Aligned_cols=80 Identities=16% Similarity=0.291 Sum_probs=70.3
Q ss_pred hcccchhhhHHHHhhhhhhHh----hhhcchhHHHHhhhChHHHHHhHHHHHHHhHHhCCCchhhhcccccccccceeec
Q psy4746 10 LTSVNNWELSTCYQRWLTPFH----YCSQIRDIIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQH 85 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~----~~g~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~w~~~~~~~i~ 85 (314)
..|+||.|=+|.++.|++|.+ |.|++..+++.|.++...|.+..+.+.++++-+.+|+.+.+|+-.+.-..|.+-+
T Consensus 443 iA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtk 522 (971)
T KOG0501|consen 443 IAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTK 522 (971)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhc
Confidence 468999999999999999998 8999999999999999999999999999999999999999999876545555544
Q ss_pred CCcc
Q psy4746 86 TLGY 89 (314)
Q Consensus 86 p~s~ 89 (314)
.-+.
T Consensus 523 GiDT 526 (971)
T KOG0501|consen 523 GIDT 526 (971)
T ss_pred CcCH
Confidence 4443
No 23
>KOG4404|consensus
Probab=96.06 E-value=0.0051 Score=54.83 Aligned_cols=46 Identities=30% Similarity=0.486 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhccC-CCCCCC-------ChhhH-HHHHHHHHHHHHHhhhhc
Q psy4746 267 AYIRCFYFATKTATSIG-KNPRPT-------NEMEY-VFMTVSWLLGVFVFAVLI 312 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG-~di~p~-------t~~E~-~~~i~~~l~G~~~~a~ii 312 (314)
.|.+|+|+.++|+||+| ||.+|- +..++ .++.+.+++|..+++..+
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~ 240 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALL 240 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHH
Confidence 49999999999999999 897763 33444 566778889988887654
No 24
>KOG2302|consensus
Probab=95.68 E-value=0.043 Score=55.75 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=52.1
Q ss_pred eecCCcchh---------HHHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHH-HHHHHHHHHHHhhccceeEEec
Q psy4746 83 QQHTLGYWY---------ISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFD-YVMDVIYILDLLLIKPRLIYLD 152 (314)
Q Consensus 83 ~i~p~s~~~---------~~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~-~~~d~~f~~Divl~~~~t~y~~ 152 (314)
.+.|+++++ +..|.++++.++.|++.+..+- +.......-..+..++ ++...+|+.|+.++--..+.+
T Consensus 1106 lF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialer-p~i~~~s~EriFltlsnyIFtaIfV~Em~lKVVALGl~- 1183 (1956)
T KOG2302|consen 1106 LFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALER-PAIVEGSTERIFLTLSNYIFTAIFVVEMTLKVVALGLY- 1183 (1956)
T ss_pred hcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcc-cccccCcceEEEEEecchHHHHHHHHHHHHHHHhhhhc-
Confidence 788999876 4677788888888888775432 2221111112233343 788899999998742222222
Q ss_pred CCeEEechHHHHHHHHhcccchhhhc
Q psy4746 153 DGFWIKDSKLTRIQYRRKLQYKNDLL 178 (314)
Q Consensus 153 ~g~iv~~~~~i~~~Yi~~~~f~~Dli 178 (314)
.+-..|+++.|-.+|.+
T Consensus 1184 ---------fge~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1184 ---------FGEQAYLRSSWNVLDGF 1200 (1956)
T ss_pred ---------cchHHHHHHHHHhhhHH
Confidence 12467888778777754
No 25
>KOG3827|consensus
Probab=95.63 E-value=0.06 Score=49.31 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHhhccCC-----CCcccc-cCchhHHHHHHHHHHHHhhccCC---CCCCCChhhHH
Q psy4746 225 VRVARTLTYMIYLVHLNACAYYEISVREGLG-----INSWVY-DGKGNAYIRCFYFATKTATSIGK---NPRPTNEMEYV 295 (314)
Q Consensus 225 ~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~-----~~~W~~-~~~~~~Y~~s~ywa~~t~ttvG~---di~p~t~~E~~ 295 (314)
..++-+...+++..-++|++||+|+...+.- +.+|.. -........||-||+-|=||+|| -++..=+.-.+
T Consensus 64 ~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ 143 (400)
T KOG3827|consen 64 WMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIF 143 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHH
Confidence 3344444455555666899999999876541 122322 12236788999999999999996 35666677778
Q ss_pred HHHHHHHHHHHHhhhhcc
Q psy4746 296 FMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 296 ~~i~~~l~G~~~~a~iiG 313 (314)
..++-+++|+++-|+++|
T Consensus 144 ll~~Q~I~g~ii~afm~G 161 (400)
T KOG3827|consen 144 LLVLQSILGVIINAFMVG 161 (400)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888899999999999987
No 26
>KOG3193|consensus
Probab=94.62 E-value=0.034 Score=52.99 Aligned_cols=125 Identities=17% Similarity=0.282 Sum_probs=64.2
Q ss_pred cchhhhcccchhHHHHHhhccccceeeehhhhhHhHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy4746 172 QYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFW----EFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYE 247 (314)
Q Consensus 172 ~f~~Dlis~lP~~~~~~~~~~~~~~lrl~rllr~~r~~----~~~~~l~~~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~ 247 (314)
.|.++++..+|+.+-.++... ..+.++-++...--- ..++.+.+... ..-..+.-.++++.-..+|+-+-
T Consensus 127 hfllelitsfpfii~ifipsl--tylyvpvflncwlakgalqammndl~r~~~----~s~sal~~ql~ll~s~l~clift 200 (1087)
T KOG3193|consen 127 HFLLELITSFPFIISIFIPSL--TYLYVPVFLNCWLAKGALQAMMNDLNRKSF----ISSSALFRQLLLLFSVLACLIFT 200 (1087)
T ss_pred HHHHHHhhcccceeeeecccc--ceeechhhhhhhhhhhHHHHhhhhHhHHhh----hhHHHHHHHHHHHHHHHHHHHHh
Confidence 788899999998553322221 244444444433211 12233332221 11122222334444555665543
Q ss_pred -hHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHH
Q psy4746 248 -ISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVF 306 (314)
Q Consensus 248 -i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~ 306 (314)
++..+..+.. ....-....|+|++++|++|||| |-.|.-....+..++++-+..+
T Consensus 201 ~~c~i~h~qra----~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~ 257 (1087)
T KOG3193|consen 201 GMCSIEHLQRA----RGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALG 257 (1087)
T ss_pred hhhhHHHHHHc----cCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHh
Confidence 2222221100 00012245789999999999995 9999888777766655544443
No 27
>KOG4404|consensus
Probab=93.91 E-value=0.0047 Score=55.06 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHH
Q psy4746 267 AYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGV 305 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~ 305 (314)
++.-|||||.+.+||+|| .-+|.|+.+++|+++-.++|+
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gi 119 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGI 119 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcC
Confidence 688899999999999995 789999999999999999985
No 28
>KOG2301|consensus
Probab=93.59 E-value=0.26 Score=53.78 Aligned_cols=141 Identities=9% Similarity=0.064 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhcccch
Q psy4746 95 LCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYK 174 (314)
Q Consensus 95 d~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~~f~ 174 (314)
+.++...++.+....+..-....+.......+...|++...+|.+|++++ ++.++-. -|.++.|.+
T Consensus 843 ~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK-----------~ia~Gf~---~y~rn~w~~ 908 (1592)
T KOG2301|consen 843 EAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLK-----------WIAYGFF---FYFRNAWNW 908 (1592)
T ss_pred HHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHH-----------HHHhHHH---HHHhhHHhh
Confidence 45555555555554443322222222233455688899999999999873 3333333 399999999
Q ss_pred hhhcccchhHHHHHhhccccceeeehhhhhHhHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q psy4746 175 NDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLA-SPYVVRVARTLTYMIYLVHLNACAYYEIS 249 (314)
Q Consensus 175 ~Dlis~lP~~~~~~~~~~~~~~lrl~rllr~~r~~~~~~~l~~~~~-~~~~~~l~~l~~~~l~~~H~~aC~~~~i~ 249 (314)
+|++-..--.+-......+....|.+|.+|..|.++..++.+..-. ....+.-++.++..+++.+.+=+++-.+|
T Consensus 909 lDf~Vv~vslisl~~~~~~~~~ik~lr~lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~g 984 (1592)
T KOG2301|consen 909 LDFVVVIVSLISLIASLKILSLIKSLRILRALRPLRALSRFPGMRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMG 984 (1592)
T ss_pred hhHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987654332222221222345666666666666666666554211 22234444444444444444444433333
No 29
>KOG1418|consensus
Probab=93.11 E-value=0.011 Score=55.82 Aligned_cols=46 Identities=26% Similarity=0.481 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhccC-CCCCCCChhhH--------HHHHHHHHHHHHHhhhhc
Q psy4746 267 AYIRCFYFATKTATSIG-KNPRPTNEMEY--------VFMTVSWLLGVFVFAVLI 312 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG-~di~p~t~~E~--------~~~i~~~l~G~~~~a~ii 312 (314)
-|+.|+|++++++||+| ||+.|.+...+ ....+..++|....+...
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 48899999999999999 69999998866 577778888887776543
No 30
>KOG2301|consensus
Probab=89.04 E-value=1.7 Score=47.83 Aligned_cols=96 Identities=15% Similarity=0.222 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhcccchhhhcccchhHHHHHhhccc--cceeeehhhhh
Q psy4746 127 FVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGFE--CTFLRLPRLIK 204 (314)
Q Consensus 127 ~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~~f~~Dlis~lP~~~~~~~~~~~--~~~lrl~rllr 204 (314)
..-+.+.-.+|..|+.++. -...-..|+.+++.++|.+-+. +.+........ .+++|..|++|
T Consensus 476 ~~~~~vF~~lF~~Em~~ki--------------~al~~~~yF~~~~n~fD~~iv~-l~~~~~~~~~~~g~svLr~frllR 540 (1592)
T KOG2301|consen 476 YLGNVVFTGLFTVEMILKI--------------YALGPRNYFRRGWNIFDLIIVL-LSLLELLLKNVYGLSVLRSFRLLR 540 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHcCcHHHHhhhcchheEEEEe-hhhHHhcccchHHHHHHHHHHHHH
Confidence 3455667788889988742 1223457888878999988777 55543331111 26788888888
Q ss_pred HhHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHH
Q psy4746 205 IQTFWEFCNHFDSVLA--SPYVVRVARTLTYMIYL 237 (314)
Q Consensus 205 ~~r~~~~~~~l~~~~~--~~~~~~l~~l~~~~l~~ 237 (314)
++|+.+....++...+ ..+...+..|.+.+++.
T Consensus 541 Ifkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~ 575 (1592)
T KOG2301|consen 541 IFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIF 575 (1592)
T ss_pred HHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888776555554432 12233444444444333
No 31
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=80.42 E-value=1 Score=35.63 Aligned_cols=49 Identities=16% Similarity=0.341 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 265 GNAYIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 265 ~~~Y~~s~ywa~~t~ttvG~di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
......++++++.+++.-|.+..|++...|++.++..+++.++.+.-.|
T Consensus 42 ~~~~~~~~~~~~~~~~~q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta 90 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQQGSSIRPRSWSGRILLAFWWLFSLILIASYTA 90 (148)
T ss_dssp HHHHHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999888887644589999999999999999999888776543
No 32
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=65.67 E-value=19 Score=29.31 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=32.6
Q ss_pred eeeehhhhhHhHHHH----HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhHh
Q psy4746 196 FLRLPRLIKIQTFWE----FCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISV 250 (314)
Q Consensus 196 ~lrl~rllr~~r~~~----~~~~l~~~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~ 250 (314)
.+|+.|++|+.|..+ ..+.+.+ ..+...++..++..++...++.++..+.-..
T Consensus 67 ~l~~~R~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~ 123 (200)
T PF00520_consen 67 LLRLLRLLRLLRRFRSLRRLLRALIR--SFPDLFKFILLLFIVLLFFACIGYQLFGGSD 123 (200)
T ss_dssp HHHHHHHHHHHHTTTSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred eecccccccccccccccccccccccc--ccccccccccccccccccccchhheeccccc
Confidence 344444444444433 2233332 2334778888888888888888888888654
No 33
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=54.14 E-value=70 Score=32.99 Aligned_cols=70 Identities=7% Similarity=-0.029 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCCCCCCCC
Q psy4746 221 SPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGKNPRPTN 290 (314)
Q Consensus 221 ~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~di~p~t 290 (314)
+..+--+.+.+...++..|++|++....-.........-+.+........|+|-|+++....|-++.|.+
T Consensus 445 YRaLk~L~~Iv~~Y~~~~~llG~i~l~~wi~~~~~~~~~l~~~gin~~W~aiFhAVSAFnNAGFsL~~dS 514 (800)
T TIGR00934 445 YRALKCLCSIVLVYFLGFNILGFVLLLPWINHVKTYSEVVRSKGVSPTWWGFFTAMSAFANLGLTLTPES 514 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHhhcCccHHHHHHHHHHHHHhcCCCCcCCCc
Confidence 4444556777777888999999887654443211111112222234556889999999988887777754
No 34
>KOG2302|consensus
Probab=42.62 E-value=64 Score=34.11 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhheeeeeeeccc--ccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhcc
Q psy4746 94 WLCLVTLSYLYNCFVIPLRVTFPYQ--TRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKL 171 (314)
Q Consensus 94 Wd~~~~~~~i~~~~~~p~~i~f~~~--~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~ 171 (314)
.+.+.++.++.|++.+-..---+.. ..+.-.+++.+|-++-+.|.+|++++.-- -+--++|-|+-..
T Consensus 81 fe~vsmlvillncvtlgmfrpced~~c~s~rc~ilqafddfifaffavemv~kmva-----------lgifgkkcylgdt 149 (1956)
T KOG2302|consen 81 FECVSMLVILLNCVTLGMFRPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVA-----------LGIFGKKCYLGDT 149 (1956)
T ss_pred HHHHHHHHHHHhhhhhcccccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-----------HhhccccccccCc
Confidence 3777888888888876432111111 11233456777888888999999985322 2333466787655
Q ss_pred cchhhhcccc
Q psy4746 172 QYKNDLLSLM 181 (314)
Q Consensus 172 ~f~~Dlis~l 181 (314)
|-.+|+.-.+
T Consensus 150 wnrldffiv~ 159 (1956)
T KOG2302|consen 150 WNRLDFFIVM 159 (1956)
T ss_pred hhhhhhhhee
Confidence 7777776544
No 35
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=41.29 E-value=1.1e+02 Score=28.64 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhhccCC---CCCCCChhhHHHHHHHHHHHHH
Q psy4746 266 NAYIRCFYFATKTATSIGK---NPRPTNEMEYVFMTVSWLLGVF 306 (314)
Q Consensus 266 ~~Y~~s~ywa~~t~ttvG~---di~p~t~~E~~~~i~~~l~G~~ 306 (314)
.....+.+.++++.+|.|. |..--++.-+++.++.|++|..
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~ 273 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGC 273 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCC
Confidence 5677888999999999994 6666667778888899999854
No 36
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=39.00 E-value=2e+02 Score=23.94 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=41.7
Q ss_pred CchhHHHHHHHHHHHHhhccC-CCCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 263 GKGNAYIRCFYFATKTATSIG-KNPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 263 ~~~~~Y~~s~ywa~~t~ttvG-~di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
++.-.|.+=+|+|++.-||-+ .|..+.+..-|-....=.+++-++.+.+++
T Consensus 128 ~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 128 DWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344679999999999988888 599999999988888877777777766653
No 37
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=33.16 E-value=54 Score=21.68 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=25.9
Q ss_pred hhhHhhhhcchhHHHHhhhChHH---HHHhHHHHHHHhHH
Q psy4746 26 LTPFHYCSQIRDIIATATKGQTE---YRKLMDETLDYLRR 62 (314)
Q Consensus 26 ~~~~~~~g~i~~~i~~~~~~~~~---~~~~~~~~~~~~~~ 62 (314)
+.|+.+-|-||.+..+.++.+.. .++|.|++-+.+++
T Consensus 18 l~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 18 LFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHcc
Confidence 33555667899999987776554 57788887776654
No 38
>KOG1054|consensus
Probab=32.67 E-value=27 Score=34.47 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCChhhHHHHHHHHHHHHHHhh
Q psy4746 267 AYIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFA 309 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG~di~p~t~~E~~~~i~~~l~G~~~~a 309 (314)
--..|+||++..+.--|-||.|.+.++|+...+.-++..++.+
T Consensus 595 gifNsLWFsLgAFMQQG~DI~PRslSGRIvggvWWFFTlIIiS 637 (897)
T KOG1054|consen 595 GIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIIS 637 (897)
T ss_pred hhhHHHHHHHHHHHhcCCCCCccccccceeccchhhhhhhhhh
Confidence 3568999999999888889999999999999887777766654
No 39
>PRK10750 potassium transporter; Provisional
Probab=29.64 E-value=1.2e+02 Score=29.63 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHHHhhccCC---CCCCCChhhHHHHHHHHHHHHH
Q psy4746 264 KGNAYIRCFYFATKTATSIGK---NPRPTNEMEYVFMTVSWLLGVF 306 (314)
Q Consensus 264 ~~~~Y~~s~ywa~~t~ttvG~---di~p~t~~E~~~~i~~~l~G~~ 306 (314)
..++..+|++-+++.+||.|. |..--++.-+.+.++.|++|.+
T Consensus 301 ~~~~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~ 346 (483)
T PRK10750 301 ALMTLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGC 346 (483)
T ss_pred HHHHHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCC
Confidence 347888999999998999995 5555556667788888888854
No 40
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=28.06 E-value=3.5e+02 Score=27.76 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=19.5
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhHHhHh
Q psy4746 224 VV-RVARTLTYMIYLVHLNACAYYEISV 250 (314)
Q Consensus 224 ~~-~l~~l~~~~l~~~H~~aC~~~~i~~ 250 (314)
+. .++++++.++++.--+||..+.+..
T Consensus 504 i~~dl~~F~~i~~v~l~aF~~~~~~l~~ 531 (743)
T TIGR00870 504 ILGDILRFLFIYAVVLFGFACGLNQLYQ 531 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 6777777777777777888777754
No 41
>KOG3713|consensus
Probab=26.38 E-value=1.6e+02 Score=28.50 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=11.5
Q ss_pred ceeeehhhhhHhHHHHHHH
Q psy4746 195 TFLRLPRLIKIQTFWEFCN 213 (314)
Q Consensus 195 ~~lrl~rllr~~r~~~~~~ 213 (314)
+++|++|++|+-|-+.-++
T Consensus 314 R~lRI~RI~KLaRhS~GLr 332 (477)
T KOG3713|consen 314 RVLRILRIFKLARHSTGLR 332 (477)
T ss_pred HHHHHHHHHHHHhhhHHHH
Confidence 4566667777766654333
No 42
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=23.96 E-value=71 Score=21.78 Aligned_cols=32 Identities=16% Similarity=-0.222 Sum_probs=25.2
Q ss_pred hhcccchhhhHHHHhhhhhhHhhhhcchhHHHH
Q psy4746 9 CLTSVNNWELSTCYQRWLTPFHYCSQIRDIIAT 41 (314)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~i~~ 41 (314)
|-.|+. .||+-..-.-.+|++++|-++-+|.-
T Consensus 25 arKP~~-eEy~~~aKi~~~Gi~liG~IGfiI~l 56 (65)
T COG2443 25 ARKPDW-EEYSKIAKITGLGILLIGIIGFIIYL 56 (65)
T ss_pred HhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566765 58999998899999988888777643
No 43
>KOG4440|consensus
Probab=23.75 E-value=2.7e+02 Score=28.00 Aligned_cols=76 Identities=16% Similarity=0.096 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhHHhHhhccCCC----CcccccCchhHHHHHHHHHHHHhhccC-CCCCCCChhhHHHHHHHHHHHHHHh
Q psy4746 234 MIYLVHLNACAYYEISVREGLGI----NSWVYDGKGNAYIRCFYFATKTATSIG-KNPRPTNEMEYVFMTVSWLLGVFVF 308 (314)
Q Consensus 234 ~l~~~H~~aC~~~~i~~~~~~~~----~~W~~~~~~~~Y~~s~ywa~~t~ttvG-~di~p~t~~E~~~~i~~~l~G~~~~ 308 (314)
+++..|+.|...|.+-....++. ++=-.++..-....|+||+-..+..-| +.=+|.+-+-++..++..=+..++.
T Consensus 576 v~~SVhvVal~lYlLDrfSPFgRFk~~ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiV 655 (993)
T KOG4440|consen 576 VGLSVHVVALMLYLLDRFSPFGRFKVNDSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIV 655 (993)
T ss_pred HHHHHHHHHHHHHHHHhcCcccceeeccCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeee
Confidence 56778999999888776544421 111112233457788898888887777 6669998877777766554444443
Q ss_pred h
Q psy4746 309 A 309 (314)
Q Consensus 309 a 309 (314)
|
T Consensus 656 A 656 (993)
T KOG4440|consen 656 A 656 (993)
T ss_pred h
Confidence 3
No 44
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=23.65 E-value=2e+02 Score=29.83 Aligned_cols=74 Identities=11% Similarity=0.018 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccC-C--CCCCCChhhHHHHHHHHHHHHH
Q psy4746 230 TLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIG-K--NPRPTNEMEYVFMTVSWLLGVF 306 (314)
Q Consensus 230 l~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG-~--di~p~t~~E~~~~i~~~l~G~~ 306 (314)
+++...++.-..+.+.+++.+... ..--.-+..++-+.|++-|+++ =|-| . |+.-.+++-.++.+++|++|+.
T Consensus 586 ill~tt~iL~~ig~ilf~lLE~nn---~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~ 661 (800)
T TIGR00934 586 WLFFTLVGLNAIDLILFIILDWGS---SVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVL 661 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCc---cccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccC
Confidence 444444444455555555554321 1111224568999999999987 5567 4 7778888999999999999975
Q ss_pred H
Q psy4746 307 V 307 (314)
Q Consensus 307 ~ 307 (314)
=
T Consensus 662 P 662 (800)
T TIGR00934 662 P 662 (800)
T ss_pred C
Confidence 4
No 45
>PF06019 Phage_30_8: Phage GP30.8 protein; InterPro: IPR009258 This entry is represented by Bacteriophage T4, Gp30.8; it is a family of uncharacterised viral proteins.
Probab=23.49 E-value=6.6 Score=29.53 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=26.6
Q ss_pred chhcc---cchhhhHHHHhhhhhhHh------hhhcchhH
Q psy4746 8 HCLTS---VNNWELSTCYQRWLTPFH------YCSQIRDI 38 (314)
Q Consensus 8 ~~~~~---~~~~~~~~~~~~~~~~~~------~~g~i~~~ 38 (314)
+|.|| ++|+++-.++.+++.|.. +.|.||+-
T Consensus 39 ~cmTpeGpsdDF~~~I~l~nfFtg~~Y~Lkt~i~GkIr~~ 78 (123)
T PF06019_consen 39 ACMTPEGPSDDFCWTIMLENFFTGDIYRLKTVIVGKIRSK 78 (123)
T ss_pred EEECCCCCCCCEEEEEEEeecccccEEEEeeEEEEEEecc
Confidence 78887 799999999999999987 79999653
No 46
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=23.08 E-value=6.3e+02 Score=23.64 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCC-------hhhHHHHHHHHHHHHHHhh
Q psy4746 266 NAYIRCFYFATKTATSIGKNPRPTN-------EMEYVFMTVSWLLGVFVFA 309 (314)
Q Consensus 266 ~~Y~~s~ywa~~t~ttvG~di~p~t-------~~E~~~~i~~~l~G~~~~a 309 (314)
....+|++-|+++++|-|-++.+.+ ..-.+..++.|++|..=|+
T Consensus 127 ~~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~ 177 (390)
T TIGR00933 127 MPLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFT 177 (390)
T ss_pred hHHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHH
Confidence 4567999999999999995554442 2233556666777655443
No 47
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=22.19 E-value=79 Score=21.23 Aligned_cols=33 Identities=12% Similarity=-0.186 Sum_probs=25.4
Q ss_pred chhcccchhhhHHHHhhhhhhHhhhhcchhHHHH
Q psy4746 8 HCLTSVNNWELSTCYQRWLTPFHYCSQIRDIIAT 41 (314)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~i~~ 41 (314)
.|-.|.+ .||.-....-.+|.+++|-++-++.-
T Consensus 23 ~~~KPd~-~Ef~~ia~~~~iG~~i~G~iGf~Ikl 55 (61)
T PRK09400 23 VARKPTR-EEFLLVAKVTGLGILLIGLIGFIIYL 55 (61)
T ss_pred HhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667755 48999998888999988887766643
No 48
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=21.56 E-value=84 Score=21.14 Aligned_cols=33 Identities=15% Similarity=-0.043 Sum_probs=25.5
Q ss_pred chhcccchhhhHHHHhhhhhhHhhhhcchhHHHH
Q psy4746 8 HCLTSVNNWELSTCYQRWLTPFHYCSQIRDIIAT 41 (314)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~i~~ 41 (314)
.|-.|.++ ||.-....-.+|.+++|-++-+|.-
T Consensus 19 ~~~KPd~~-Ef~~iak~t~iG~~i~G~IGf~Ikl 51 (61)
T TIGR00327 19 VCKKPDLE-EYLKVAKVTGIGIIIVGIIGYIIKI 51 (61)
T ss_pred HhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677665 8988888888888888887776654
No 49
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=20.46 E-value=3.8e+02 Score=24.62 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhccC-C-CC-CC-CChh---hHHHHHHHHHHHH
Q psy4746 268 YIRCFYFATKTATSIG-K-NP-RP-TNEM---EYVFMTVSWLLGV 305 (314)
Q Consensus 268 Y~~s~ywa~~t~ttvG-~-di-~p-~t~~---E~~~~i~~~l~G~ 305 (314)
..++++=+++.+.||| . ++ +| .+.. .+++.++.|++|-
T Consensus 295 ~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~GR 339 (354)
T PF02386_consen 295 FFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLGR 339 (354)
T ss_dssp -HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHhC
Confidence 5789999999999999 4 55 44 3444 9999999999994
Done!