Query psy4746
Match_columns 314
No_of_seqs 246 out of 1537
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 16:35:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orq_C Potassium channel; volt 99.9 1.5E-23 5.3E-28 180.7 12.9 198 93-314 9-213 (223)
2 2r9r_B Paddle chimera voltage 99.8 3.5E-20 1.2E-24 177.7 8.0 213 80-313 168-422 (514)
3 3beh_A MLL3241 protein; transm 99.8 2.1E-20 7.3E-25 171.9 4.3 201 84-313 3-208 (355)
4 2a9h_A Voltage-gated potassium 99.7 1.8E-16 6E-21 128.0 10.1 116 172-313 15-131 (155)
5 2ih3_C Voltage-gated potassium 99.6 5E-15 1.7E-19 114.9 10.6 48 266-313 60-108 (122)
6 4h33_A LMO2059 protein; bilaye 99.4 2.4E-12 8.1E-17 101.8 8.9 47 267-313 43-90 (137)
7 3rvy_A ION transport protein; 99.3 1.4E-13 4.6E-18 122.6 1.0 195 92-313 30-233 (285)
8 3eff_K Voltage-gated potassium 99.3 5.7E-12 2E-16 100.0 9.4 79 227-313 8-87 (139)
9 2k1e_A Water soluble analogue 99.3 3.7E-12 1.3E-16 95.7 5.1 79 227-313 8-87 (103)
10 3vou_A ION transport 2 domain 99.3 2.3E-11 8E-16 97.5 10.0 73 227-313 26-99 (148)
11 2q67_A Potassium channel prote 99.3 5.6E-11 1.9E-15 90.8 11.2 47 267-313 49-96 (114)
12 3ldc_A Calcium-gated potassium 99.2 1.6E-11 5.5E-16 88.1 7.6 47 267-313 28-75 (82)
13 3ouf_A Potassium channel prote 99.2 4E-11 1.4E-15 88.9 9.6 72 228-313 7-79 (97)
14 1xl4_A Inward rectifier potass 99.0 6.5E-10 2.2E-14 99.1 8.8 75 231-313 54-129 (301)
15 1p7b_A Integral membrane chann 99.0 8.3E-10 2.9E-14 99.5 7.2 76 230-313 67-143 (333)
16 3pjs_K KCSA, voltage-gated pot 98.9 2.1E-12 7.1E-17 105.6 -9.5 49 266-314 66-115 (166)
17 2qks_A KIR3.1-prokaryotic KIR 98.9 9.1E-09 3.1E-13 92.3 10.4 47 267-313 78-125 (321)
18 4gx0_A TRKA domain protein; me 98.8 1.4E-08 4.7E-13 98.7 8.8 80 224-313 17-98 (565)
19 4dxw_A Navrh, ION transport pr 98.7 5.6E-08 1.9E-12 83.3 10.6 169 93-286 13-185 (229)
20 3sya_A G protein-activated inw 98.7 2.9E-08 9.9E-13 89.3 8.7 85 229-313 48-140 (340)
21 3spc_A Inward-rectifier K+ cha 98.6 1.1E-07 3.7E-12 85.6 9.4 86 228-313 49-143 (343)
22 3um7_A Potassium channel subfa 98.6 3.8E-08 1.3E-12 87.5 5.6 47 267-313 115-162 (309)
23 3ukm_A Potassium channel subfa 98.5 1.1E-07 3.7E-12 83.3 5.6 47 267-313 93-140 (280)
24 3um7_A Potassium channel subfa 98.4 4.6E-07 1.6E-11 80.5 7.8 47 267-313 224-277 (309)
25 3ukm_A Potassium channel subfa 98.4 1.5E-06 5E-11 76.1 9.4 46 268-313 202-255 (280)
26 1lnq_A MTHK channels, potassiu 98.2 1.4E-07 4.9E-12 85.4 0.2 47 267-313 45-92 (336)
27 2kyh_A KVAP, voltage-gated pot 97.9 8.7E-06 3E-10 64.6 4.7 102 93-211 22-123 (147)
28 1ors_C Potassium channel; volt 97.8 1E-05 3.5E-10 63.0 3.7 101 93-210 7-107 (132)
29 3ukn_A Novel protein similar t 96.7 0.00035 1.2E-08 58.3 1.1 47 36-82 1-47 (212)
30 2ptm_A Hyperpolarization-activ 95.3 0.0046 1.6E-07 50.8 1.2 43 40-82 1-43 (198)
31 3vou_A ION transport 2 domain 94.9 0.029 9.8E-07 44.1 4.8 63 10-72 72-148 (148)
32 3bpz_A Potassium/sodium hyperp 94.7 0.0085 2.9E-07 49.3 1.2 43 40-82 2-44 (202)
33 4h33_A LMO2059 protein; bilaye 88.8 0.13 4.6E-06 39.7 1.3 32 10-41 63-94 (137)
34 3kg2_A Glutamate receptor 2; I 77.8 1.5 5E-05 43.7 3.8 46 267-312 563-608 (823)
35 2a9h_A Voltage-gated potassium 61.4 3.7 0.00013 32.1 2.0 36 10-45 104-143 (155)
36 2ih3_C Voltage-gated potassium 55.1 6.3 0.00022 29.3 2.3 34 10-43 81-118 (122)
37 3eff_K Voltage-gated potassium 55.0 4.3 0.00015 30.9 1.3 32 10-41 60-95 (139)
38 3pjs_K KCSA, voltage-gated pot 50.7 2.4 8.3E-05 33.5 -0.8 37 10-46 87-127 (166)
39 2q67_A Potassium channel prote 43.4 9.5 0.00032 28.0 1.6 24 10-33 69-92 (114)
40 3pjz_A Potassium uptake protei 33.5 76 0.0026 29.6 6.4 43 264-306 303-348 (494)
41 1orq_C Potassium channel; volt 33.2 48 0.0016 26.9 4.6 12 240-251 166-177 (223)
42 2k1e_A Water soluble analogue 28.7 28 0.00095 24.7 2.0 26 10-35 60-85 (103)
43 1ors_C Potassium channel; volt 27.6 25 0.00085 26.3 1.7 23 195-217 95-117 (132)
44 3beh_A MLL3241 protein; transm 25.9 44 0.0015 29.3 3.3 33 9-41 180-216 (355)
45 3mp7_B Preprotein translocase 22.8 52 0.0018 21.1 2.3 33 8-41 21-53 (61)
46 3ldc_A Calcium-gated potassium 20.6 68 0.0023 21.5 2.7 24 10-33 48-71 (82)
No 1
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.90 E-value=1.5e-23 Score=180.66 Aligned_cols=198 Identities=19% Similarity=0.245 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhccc
Q psy4746 93 SWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQ 172 (314)
Q Consensus 93 ~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~~ 172 (314)
.||.++.+.++++.+........+ .+++....+..+|.+++.+|.+|+++ ++.++. .+++|+++
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~-~~~~~~~~l~~~d~~~~~iF~~e~~l-r~~~~~------------~~~~y~~~-- 72 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQ-LSGEYLVRLYLVDLILVIILWADYAY-RAYKSG------------DPAGYVKK-- 72 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHH-HTTCTTTHHHHHHHHHHHHHHHHHHH-HHHTTS------------CHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhHHHHHHHHHHHHHHHHHHH-HHcccc------------cHHHHHHH--
Confidence 478888888888888766543222 22334556778999999999999997 566531 14799986
Q ss_pred chhhhcccchhHHHHHh-hccc-cceeeehhhhhHhHHHHHHHHH---HHhh-hhHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy4746 173 YKNDLLSLMPFDLLYFV-FGFE-CTFLRLPRLIKIQTFWEFCNHF---DSVL-ASPYVVRVARTLTYMIYLVHLNACAYY 246 (314)
Q Consensus 173 f~~Dlis~lP~~~~~~~-~~~~-~~~lrl~rllr~~r~~~~~~~l---~~~~-~~~~~~~l~~l~~~~l~~~H~~aC~~~ 246 (314)
+++|+++++|++..... .+.+ .+.+|.+|++|+.|+.+..+.. .+.. ..-...++..++..+++..|+.||+++
T Consensus 73 ~iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (223)
T 1orq_C 73 TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIY 152 (223)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999876531 1110 1345555555555555543321 1111 111112466677777888999999998
Q ss_pred HhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhccC
Q psy4746 247 EISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ 314 (314)
Q Consensus 247 ~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG~ 314 (314)
.+... ++++ +...|.+|+||+++||||+|| |++|.|+.|++++++.|++|++++|+.+|+
T Consensus 153 ~~e~~---~~~~-----~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~ 213 (223)
T 1orq_C 153 IVEYP---DPNS-----SIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGT 213 (223)
T ss_dssp HTTSS---STTC-----SCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC---CcCC-----CcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 76442 1222 236899999999999999995 999999999999999999999999999873
No 2
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.80 E-value=3.5e-20 Score=177.69 Aligned_cols=213 Identities=13% Similarity=0.163 Sum_probs=137.4
Q ss_pred cceee-cCCc-chhHHHHHHHHHHHHHHhhheeeeee--eccc-----------------------ccCCchhhhhHHHH
Q psy4746 80 TWEQQ-HTLG-YWYISWLCLVTLSYLYNCFVIPLRVT--FPYQ-----------------------TRSNLITWFVFDYV 132 (314)
Q Consensus 80 ~~~~i-~p~s-~~~~~Wd~~~~~~~i~~~~~~p~~i~--f~~~-----------------------~~~~~~~~~~i~~~ 132 (314)
.|..+ +|.| ...+.++.+++++++.+.+...+.-. +... .......+..+|.+
T Consensus 168 lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i 247 (514)
T 2r9r_B 168 VWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETL 247 (514)
T ss_dssp HHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhHHHHHHHH
Confidence 34444 4654 56788898888888888877654321 1110 00123356789999
Q ss_pred HHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhcccchhhhcccchhHHHHHhhcc--------c-c---ceeeeh
Q psy4746 133 MDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQYKNDLLSLMPFDLLYFVFGF--------E-C---TFLRLP 200 (314)
Q Consensus 133 ~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~~f~~Dlis~lP~~~~~~~~~~--------~-~---~~lrl~ 200 (314)
+.++|.+|+++ ++.+. + .+++|++++|.++|+++++|+.+....... . . +.+|++
T Consensus 248 ~~~iFtiE~il-R~~~~--~----------~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRll 314 (514)
T 2r9r_B 248 CIIWFSFEFLV-RFFAC--P----------SKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIM 314 (514)
T ss_dssp HHHHHHHHHHH-HHHHS--S----------CSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHhC--C----------cHHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHH
Confidence 99999999998 44432 0 125899998899999999999765433110 0 1 233333
Q ss_pred hhhhHhHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHH
Q psy4746 201 RLIKIQTFWEFCNHFDSVLA--SPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKT 278 (314)
Q Consensus 201 rllr~~r~~~~~~~l~~~~~--~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t 278 (314)
|++|++|+.+....++.... ....-.+..+++.+++..+++||+.|.... ..+ +++...|..|+||+++|
T Consensus 315 RvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~---~~~-----~~~F~s~~~a~y~~~vT 386 (514)
T 2r9r_B 315 RILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEA---DER-----DSQFPSIPDAFWWAVVS 386 (514)
T ss_dssp GGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCT-----TCSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeec---cCC-----CccccchhhhhheeeeE
Confidence 33333333332222222111 111223444555556667778887775522 111 22337799999999999
Q ss_pred hhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 279 ATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 279 ~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
|||+|| |+.|.|..++++++++|++|.+++++.+|
T Consensus 387 ~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~ia 422 (514)
T 2r9r_B 387 MTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVP 422 (514)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred EEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHH
Confidence 999995 99999999999999999999999999876
No 3
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.79 E-value=2.1e-20 Score=171.91 Aligned_cols=201 Identities=15% Similarity=0.090 Sum_probs=123.0
Q ss_pred ecCCcchhHHHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHH
Q psy4746 84 QHTLGYWYISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLT 163 (314)
Q Consensus 84 i~p~s~~~~~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i 163 (314)
.+|+|+.. +.++.+.++.+.+.+... ..+.........+..++.++-..|.+|++++ +... ++
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r-~~~~--~~---------- 65 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAAL-TIPDMSGRSRLALAALLAVIWGAYLLQLAAT-LLKR--RA---------- 65 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHH-TSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCC--CS----------
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHH-cccchhhhHHHHHHHHHhHHHHHHHHHHHHh-cccc--cc----------
Confidence 46777765 445555555555544433 1221111111123334444445688999863 2210 00
Q ss_pred HHHHHhcccchhhhccc-chhHHHHHhhccccceeeehhhhhHhHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy4746 164 RIQYRRKLQYKNDLLSL-MPFDLLYFVFGFECTFLRLPRLIKIQTFWE---FCNHFDSVLASPYVVRVARTLTYMIYLVH 239 (314)
Q Consensus 164 ~~~Yi~~~~f~~Dlis~-lP~~~~~~~~~~~~~~lrl~rllr~~r~~~---~~~~l~~~~~~~~~~~l~~l~~~~l~~~H 239 (314)
+..|.++++.++|++++ +|+.... ..+.+.+|++|++|+.|+.+ ..+.+..... ...-++..++..++++.|
T Consensus 66 ~~~~~~~~~~i~Dl~~i~~p~~~~~---~~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~-~~~~~l~~~~~~~~~~~~ 141 (355)
T 3beh_A 66 GVVRDRTPKIAIDVLAVLVPLAAFL---LDGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLA-NEARNLIGVTTLFGVVLF 141 (355)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHH---SCCSGGGGGGGGGGGSHHHHTCSSHHHHHHHHH-HTHHHHHHHHHHHHHHHH
T ss_pred cceeccCcchHHHHHHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 11344556889999998 6986643 22223344444444444443 3334333222 123455666777788899
Q ss_pred HHHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 240 LNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 240 ~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
+.||+++.+....+ ++....|.+|+||+++||||+|| |++|.|+.|+++++++|++|.+++|+.+|
T Consensus 142 ~~a~~~~~~e~~~~--------~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~ 208 (355)
T 3beh_A 142 AVALAAYVIERDIQ--------PEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAG 208 (355)
T ss_dssp HHHHHHHHHHTTTC--------HHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCC--------CcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998865321 12236799999999999999995 99999999999999999999999999987
No 4
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.67 E-value=1.8e-16 Score=127.98 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=58.2
Q ss_pred cchhhhcccchhHHHHHhhccccceeeehhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhHhh
Q psy4746 172 QYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVR 251 (314)
Q Consensus 172 ~f~~Dlis~lP~~~~~~~~~~~~~~lrl~rllr~~r~~~~~~~l~~~~~~~~~~~l~~l~~~~l~~~H~~aC~~~~i~~~ 251 (314)
+.++|+++++|+ +|.+|++|++|++ +.+. .... ..... ...++.+++..-..|++++.+...
T Consensus 15 ~~~~dli~~lp~-------------lr~lRllRi~ril-l~r~-~~~l-~~~~~--~~~~~~~~~~i~~~a~~~~~~E~~ 76 (155)
T 2a9h_A 15 EGRGRLIKHMPP-------------MLSGLLARLVKLL-LGRH-GSAL-HWRAA--GAATVLLVIVLLAGSYLAVLAERG 76 (155)
T ss_dssp ----------------------------------------------CC-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHH-------------HHHHHHHHHHHHH-HHHH-HHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 568999999997 3444444444443 1111 1111 11111 112222333334455555555432
Q ss_pred ccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 252 EGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 252 ~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
. +++....|.+|+||+++|+||+|| |++|.|..+++++++++++|+.++|+++|
T Consensus 77 ~--------~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~ 131 (155)
T 2a9h_A 77 A--------PGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFA 131 (155)
T ss_dssp S--------SCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--------CCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122336799999999999999995 99999999999999999999999999886
No 5
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.60 E-value=5e-15 Score=114.92 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 266 NAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 266 ~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
..|.+|+||+++|+||+|| |++|.|+.|++++++.+++|+.++|+.+|
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~ 108 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTA 108 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999995 99999999999999999999999999887
No 6
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.35 E-value=2.4e-12 Score=101.80 Aligned_cols=47 Identities=19% Similarity=0.443 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 267 AYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
.|.+|+||+++|+||||| |++|.|+.|++++++.+++|++++|+++|
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~ 90 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITS 90 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999995 99999999999999999999999999876
No 7
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.34 E-value=1.4e-13 Score=122.64 Aligned_cols=195 Identities=10% Similarity=0.082 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhcc
Q psy4746 92 ISWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKL 171 (314)
Q Consensus 92 ~~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~ 171 (314)
..++.++.+.++.+.+.+...- .+.........+..+|.++-.+|.+|++++. .. .+ ++|++++
T Consensus 30 ~~f~~~i~~li~l~~i~~~~~~-~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl-~~----------~~----~~y~~~~ 93 (285)
T 3rvy_A 30 SFFTKFIIYLIVLNGITMGLET-SKTFMQSFGVYTTLFNQIVITIFTIEIILRI-YV----------HR----ISFFKDP 93 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CTTHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HT----------TG----GGGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CcccchHHHHHHHHHHHHHHHHHHHHHHHHH-HH----------Hh----HHHHcCC
Confidence 3567777777777776654332 1111112334566889999999999999742 21 22 5799998
Q ss_pred cchhhhcccchhHHHHHhhccccceeeehhhhhHhHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q psy4746 172 QYKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLA--SPYVVRVARTLTYMIYLVHLNACAYYEIS 249 (314)
Q Consensus 172 ~f~~Dlis~lP~~~~~~~~~~~~~~lrl~rllr~~r~~~~~~~l~~~~~--~~~~~~l~~l~~~~l~~~H~~aC~~~~i~ 249 (314)
|.++|+++.+|...- .....+.+|++|++|+.|+.+..+.++.... ....-.+...++.++++.-.+|++-+.+-
T Consensus 94 wn~~Dl~~v~~~~i~---~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f 170 (285)
T 3rvy_A 94 WSLFDFFVVAISLVP---TSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLF 170 (285)
T ss_dssp HHHHHHHHHHHHHSC---SSSSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988876432 1122245666666666666654444433221 11111223333333333333343322221
Q ss_pred hhccCCCCcccccCchhHHHHHHHHHHHHhhccC-C-CCC-CCChhh----HHHHHHHHHHHHHHhhhhcc
Q psy4746 250 VREGLGINSWVYDGKGNAYIRCFYFATKTATSIG-K-NPR-PTNEME----YVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 250 ~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG-~-di~-p~t~~E----~~~~i~~~l~G~~~~a~iiG 313 (314)
. +.. ++..+.+..|+||++.|+||+| + |+. |.+... +.+.+++++.|.++.+.++|
T Consensus 171 ~--~~~------~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~a 233 (285)
T 3rvy_A 171 G--ERF------PEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVA 233 (285)
T ss_dssp T--TTC------HHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--ccc------ccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHH
Confidence 1 111 1234778999999999999999 6 875 777654 88889999999999888765
No 8
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.32 E-value=5.7e-12 Score=99.99 Aligned_cols=79 Identities=14% Similarity=0.228 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHH
Q psy4746 227 VARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGV 305 (314)
Q Consensus 227 l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~ 305 (314)
++..++.++...+..|++++.+....+ ++ ....|.+|+||+++|+||||| |++|.|..+++++++.+++|+
T Consensus 8 ~~~~~~~~~~~~~~~a~~~~~~e~~~~-~~-------~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~ 79 (139)
T 3eff_K 8 AGAATVLLVIVLLAGSYLAVLAERGAP-GA-------QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGI 79 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCT-TC-------CCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-Cc-------ccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHH
Confidence 444455556666667777766544221 11 224699999999999999995 999999999999999999999
Q ss_pred HHhhhhcc
Q psy4746 306 FVFAVLIG 313 (314)
Q Consensus 306 ~~~a~iiG 313 (314)
.++|+.+|
T Consensus 80 ~~~~~~~~ 87 (139)
T 3eff_K 80 TSFGLVTA 87 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 9
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.26 E-value=3.7e-12 Score=95.65 Aligned_cols=79 Identities=15% Similarity=0.157 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHH
Q psy4746 227 VARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGV 305 (314)
Q Consensus 227 l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~ 305 (314)
++..+..++.+....|++++.+....+ ++....|.+|+||+++|+||+|| |++|.|..+|+++++.+++|+
T Consensus 8 ~l~~~~~~~~~~~~~a~~~~~~E~~~~--------~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~ 79 (103)
T 2k1e_A 8 AQKAEEELQKVLEEASKKAVEAERGAP--------GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGI 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTST--------TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCC--------CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHH
Confidence 344455556666777888877654321 12235688999999999999995 999999999999999999999
Q ss_pred HHhhhhcc
Q psy4746 306 FVFAVLIG 313 (314)
Q Consensus 306 ~~~a~iiG 313 (314)
.++|+.+|
T Consensus 80 ~~~~~~~~ 87 (103)
T 2k1e_A 80 EVFALVTA 87 (103)
T ss_dssp HHHHHTHH
T ss_pred HHHHHHHH
Confidence 99999876
No 10
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.26 E-value=2.3e-11 Score=97.47 Aligned_cols=73 Identities=19% Similarity=0.336 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHH
Q psy4746 227 VARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGV 305 (314)
Q Consensus 227 l~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~ 305 (314)
.+..++.++++.++.|++.|...+ .| .|.+|+||+++|+||+|| |++|.|..+++++++.+++|+
T Consensus 26 ~~~~~~~~~~~~~~~g~~~~~~~e-------~~-------~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~ 91 (148)
T 3vou_A 26 EFQVLFVLTFLTLTSGTIFYSTVE-------GL-------RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGI 91 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-------CC-------CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------CC-------CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHH
Confidence 345555566777778887775322 13 489999999999999995 999999999999999999999
Q ss_pred HHhhhhcc
Q psy4746 306 FVFAVLIG 313 (314)
Q Consensus 306 ~~~a~iiG 313 (314)
+++++.+|
T Consensus 92 ~~~~~~~~ 99 (148)
T 3vou_A 92 GLVFGFIH 99 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 11
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.25 E-value=5.6e-11 Score=90.79 Aligned_cols=47 Identities=23% Similarity=0.411 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 267 AYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
.|.+|+||+++|+||+|| |++|.|+.+++++++.+++|+.++++.+|
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~ 96 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIH 96 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999995 99999999999999999999999999876
No 12
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.25 E-value=1.6e-11 Score=88.11 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 267 AYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
.|.+|+||+++|+||+|| |++|.|+.+|+++++.+++|..++++.+|
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~ 75 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVE 75 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999995 99999999999999999999999999876
No 13
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.24 E-value=4e-11 Score=88.88 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHH
Q psy4746 228 ARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVF 306 (314)
Q Consensus 228 ~~l~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~ 306 (314)
++..+.++++....+++.|...+ +| .|.+|+||+++|+||+|| |++|.|..+|+++++.+++|+.
T Consensus 7 ~~~~~~~~~~~~~~g~~~~~~~e-------~~-------~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~ 72 (97)
T 3ouf_A 7 FQVLFVLTILTLISGTIFYSTVE-------GL-------RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIG 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-------CC-------CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------CC-------CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHH
Confidence 34445555666666776665332 13 489999999999999995 9999999999999999999999
Q ss_pred Hhhhhcc
Q psy4746 307 VFAVLIG 313 (314)
Q Consensus 307 ~~a~iiG 313 (314)
++++.+|
T Consensus 73 ~~~~~i~ 79 (97)
T 3ouf_A 73 LVFGFIH 79 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 14
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.02 E-value=6.5e-10 Score=99.07 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhh
Q psy4746 231 LTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFA 309 (314)
Q Consensus 231 ~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a 309 (314)
+...+++...+|++|+.++.. .++ +....|..|+|||++|+||+|| |++|.+..+++++++.+++|++++|
T Consensus 54 ~~~~~~~~l~fa~ly~~~~~~--~~~------~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a 125 (301)
T 1xl4_A 54 TGLYLVTNALFALAYLACGDV--IEN------ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLA 125 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTCSC--STT------SCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccc--cCC------CCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 333445567788887766421 111 1235689999999999999995 9999999999999999999999999
Q ss_pred hhcc
Q psy4746 310 VLIG 313 (314)
Q Consensus 310 ~iiG 313 (314)
+.+|
T Consensus 126 ~~~g 129 (301)
T 1xl4_A 126 VAAS 129 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 15
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.96 E-value=8.3e-10 Score=99.47 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHhHHhHhhccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHh
Q psy4746 230 TLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVF 308 (314)
Q Consensus 230 l~~~~l~~~H~~aC~~~~i~~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~ 308 (314)
++..++++...+|++|+..+... + +.....|..|+|||++|+||+|| |++|.+..+++++++.+++|++++
T Consensus 67 ~~~~~l~~~l~fally~~e~~~~---~-----~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~ 138 (333)
T 1p7b_A 67 LAALFVVNNTLFALLYQLGDAPI---A-----NQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGI 138 (333)
T ss_dssp HHHHHHHHHHHHHTTTSSSSSCC---C-----CSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccc---c-----CCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 33334555667777776543211 0 01124578999999999999995 999999999999999999999999
Q ss_pred hhhcc
Q psy4746 309 AVLIG 313 (314)
Q Consensus 309 a~iiG 313 (314)
|+++|
T Consensus 139 a~~ig 143 (333)
T 1p7b_A 139 ALSTG 143 (333)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99887
No 16
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.95 E-value=2.1e-12 Score=105.61 Aligned_cols=49 Identities=20% Similarity=0.389 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhccC
Q psy4746 266 NAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIGQ 314 (314)
Q Consensus 266 ~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG~ 314 (314)
..|.+|+||+++|+||||| |++|.|..+++++++.+++|++++|+++|.
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~ 115 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAA 115 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999995 999999999999999999999999999874
No 17
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.87 E-value=9.1e-09 Score=92.35 Aligned_cols=47 Identities=19% Similarity=0.397 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 267 AYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
.|..|+|||++||||||| |+.|.+..+++++++.+++|++++|+++|
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g 125 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATG 125 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999995 99999999999999999999999999887
No 18
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.77 E-value=1.4e-08 Score=98.67 Aligned_cols=80 Identities=13% Similarity=0.331 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHh-hccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHH
Q psy4746 224 VVRVARTLTYMIYLVHLNACAYYEISV-REGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSW 301 (314)
Q Consensus 224 ~~~l~~l~~~~l~~~H~~aC~~~~i~~-~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~ 301 (314)
..++...++.++++.+..+|+|+++.. .++ ..| .|..|+||+++|+||+|| |++|.|..+++++++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~-------~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~ 86 (565)
T 4gx0_A 17 LKVLLLYCAFLLVMLLAYASIFRYLMWHLEG---RAY-------SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVT 86 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-------CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCC-------chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHH
Confidence 445666677777778888888877654 333 223 478999999999999995 99999999999999999
Q ss_pred HHHHHHhhhhcc
Q psy4746 302 LLGVFVFAVLIG 313 (314)
Q Consensus 302 l~G~~~~a~iiG 313 (314)
++|++++++.+|
T Consensus 87 ~~g~~~~~~~~~ 98 (565)
T 4gx0_A 87 VSGVIFLDIILP 98 (565)
T ss_dssp HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 19
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.73 E-value=5.6e-08 Score=83.34 Aligned_cols=169 Identities=11% Similarity=0.044 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhccc
Q psy4746 93 SWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQ 172 (314)
Q Consensus 93 ~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~~ 172 (314)
.+|.++.+.++.+.+....+- .+ ..++....+..+|.++-.+|.+|++++. .. . ..+++|++++|
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~-~~-~~~~~~~~l~~~e~~~~~iF~~E~~lri-~~----------~--~~~~~y~~~~w 77 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATT-YE-LDPLFLETIHLLDYGITIFFVIEILIRF-IG----------E--KQKADFFKSGW 77 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCC-SS-SCHHHHHHHHHHHHHHHHHHHHHHHHHH-HC---------------------CHH
T ss_pred hHHHHHHHHHHHHHHHHHHcc-CC-CChHHHHHHHHHHHHHHHHHHHHHHHHH-HH----------c--CchhHHhcCCc
Confidence 457777788888877765432 11 1222233456788999999999999842 21 1 12568999989
Q ss_pred chhhhcccchhHHHHHhhccccceeeehhhhhHhHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHH-hHHhH
Q psy4746 173 YKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEFCNHFDSVLA--SPYVVRVARTLTYMIYLVHLNACA-YYEIS 249 (314)
Q Consensus 173 f~~Dlis~lP~~~~~~~~~~~~~~lrl~rllr~~r~~~~~~~l~~~~~--~~~~~~l~~l~~~~l~~~H~~aC~-~~~i~ 249 (314)
.++|++..+|...-. ..+...+.+|+.|++|+.|+.+..+.++.... ....-.+..+...++++.-..|.+ ....+
T Consensus 78 ni~D~~~v~~~~i~~-~~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~ 156 (229)
T 4dxw_A 78 NIFDTVIVAISLIPI-PNNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFG 156 (229)
T ss_dssp HHHHHHHHHHTTCC---------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhc-CccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999977665542211 11111134566666666666665555543322 122233444444444444444443 22222
Q ss_pred hhccCCCCcccccCchhHHHHHHHHHHHHhhccCC-CC
Q psy4746 250 VREGLGINSWVYDGKGNAYIRCFYFATKTATSIGK-NP 286 (314)
Q Consensus 250 ~~~~~~~~~W~~~~~~~~Y~~s~ywa~~t~ttvG~-di 286 (314)
. .+++ ..+....|++|...++||.|. |+
T Consensus 157 ~---~~~~------~F~~~~~a~~~lf~~~t~~~w~~i 185 (229)
T 4dxw_A 157 N---DDPS------RWGDLGISLITLFQVLTLSSWETV 185 (229)
T ss_dssp T---TSCT------TTSSHHHHHHHHHHHHTTSSTHHH
T ss_pred c---CCcc------cccCHHHHHHHHHHHHccCCHHHH
Confidence 2 1222 347789999999999999995 65
No 20
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.72 E-value=2.9e-08 Score=89.30 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhHhhccC----CCCcccc-cCchhHHHHHHHHHHHHhhccCC-CCCCC--ChhhHHHHHHH
Q psy4746 229 RTLTYMIYLVHLNACAYYEISVREGL----GINSWVY-DGKGNAYIRCFYFATKTATSIGK-NPRPT--NEMEYVFMTVS 300 (314)
Q Consensus 229 ~l~~~~l~~~H~~aC~~~~i~~~~~~----~~~~W~~-~~~~~~Y~~s~ywa~~t~ttvG~-di~p~--t~~E~~~~i~~ 300 (314)
-++..+++..-.+|++|++++...+. ++++|.. -.....+..|+|||++|+||+|| |+.|. +...++++.+.
T Consensus 48 if~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~ 127 (340)
T 3sya_A 48 IFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQ 127 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHH
Confidence 33444455566789999998754432 1223322 12245688999999999999995 99996 68899999999
Q ss_pred HHHHHHHhhhhcc
Q psy4746 301 WLLGVFVFAVLIG 313 (314)
Q Consensus 301 ~l~G~~~~a~iiG 313 (314)
+++|.++.|..+|
T Consensus 128 ~l~G~~l~a~~~g 140 (340)
T 3sya_A 128 SVLGSIVNAFMVG 140 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 21
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.62 E-value=1.1e-07 Score=85.65 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHhhccC-----CCCccccc-CchhHHHHHHHHHHHHhhccCC-CCCC--CChhhHHHHH
Q psy4746 228 ARTLTYMIYLVHLNACAYYEISVREGL-----GINSWVYD-GKGNAYIRCFYFATKTATSIGK-NPRP--TNEMEYVFMT 298 (314)
Q Consensus 228 ~~l~~~~l~~~H~~aC~~~~i~~~~~~-----~~~~W~~~-~~~~~Y~~s~ywa~~t~ttvG~-di~p--~t~~E~~~~i 298 (314)
+-++..+++..-.+|.+|++++..++. ++++|..- .....+..|+|||+.|+||+|| |+.| .++..++++.
T Consensus 49 l~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~ 128 (343)
T 3spc_A 49 LLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVV 128 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHH
Confidence 334445566677788899988765432 12345321 1246789999999999999995 8875 5899999999
Q ss_pred HHHHHHHHHhhhhcc
Q psy4746 299 VSWLLGVFVFAVLIG 313 (314)
Q Consensus 299 ~~~l~G~~~~a~iiG 313 (314)
+.+++|.++.|..+|
T Consensus 129 ~~~l~G~~l~a~~~g 143 (343)
T 3spc_A 129 VQSIVGCIIDSFMIG 143 (343)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999876
No 22
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.60 E-value=3.8e-08 Score=87.49 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 267 AYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
.|..|+||+++|+||||| |++|.|..+|+++++.+++|+.+++++++
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~ 162 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLA 162 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 699999999999999995 99999999999999999999999998875
No 23
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.49 E-value=1.1e-07 Score=83.30 Aligned_cols=47 Identities=13% Similarity=0.337 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 267 AYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
.|..|+||+++|+||+|| |++|.|+.+|+++++.+++|+.++++.++
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~ 140 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLT 140 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999995 99999999999999999999999988765
No 24
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.42 E-value=4.6e-07 Score=80.50 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhccCC-CCCCCChhhH------HHHHHHHHHHHHHhhhhcc
Q psy4746 267 AYIRCFYFATKTATSIGK-NPRPTNEMEY------VFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG~-di~p~t~~E~------~~~i~~~l~G~~~~a~iiG 313 (314)
.|.+|+||+++|+||||| |++|.++.++ +++++.+++|+.++|+++|
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~ 277 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLT 277 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999995 9999999987 5999999999999999875
No 25
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.36 E-value=1.5e-06 Score=76.12 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhccCC-CCCCCChh-------hHHHHHHHHHHHHHHhhhhcc
Q psy4746 268 YIRCFYFATKTATSIGK-NPRPTNEM-------EYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 268 Y~~s~ywa~~t~ttvG~-di~p~t~~-------E~~~~i~~~l~G~~~~a~iiG 313 (314)
|.+|+||+++|+||||| |+.|.++. .++++++.+++|.+++|++++
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~ 255 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLE 255 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999995 99999985 499999999999999999875
No 26
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.24 E-value=1.4e-07 Score=85.43 Aligned_cols=47 Identities=21% Similarity=0.424 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHhhhhcc
Q psy4746 267 AYIRCFYFATKTATSIGK-NPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG~-di~p~t~~E~~~~i~~~l~G~~~~a~iiG 313 (314)
.|..|+||+++|+||+|| |++|.|..+++++++.+++|+.++++.+|
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~ 92 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVE 92 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHH
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999995 99999999999999999999999998876
No 27
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.92 E-value=8.7e-06 Score=64.57 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhccc
Q psy4746 93 SWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQ 172 (314)
Q Consensus 93 ~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~~ 172 (314)
.||..+.+.++.+.+.+-.....+.. .+..+.+..+|..|-.+|.+|++++ +..+ .-+++|+++
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i~-~~~~~~~~~id~~~~~iF~~Ey~lR-l~~a------------~~k~~f~~~-- 85 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQLS-GEYLVRLYLVDLILVIILWADYAYR-AYKS------------GDPAGYVKK-- 85 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------------TCHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhc-hhHHHHHHHHHHHHHHHHHHHHHHH-HHHC------------CcHHHHHHH--
Confidence 35666666666666555443322221 1233456788999999999999874 3321 124678886
Q ss_pred chhhhcccchhHHHHHhhccccceeeehhhhhHhHHHHH
Q psy4746 173 YKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWEF 211 (314)
Q Consensus 173 f~~Dlis~lP~~~~~~~~~~~~~~lrl~rllr~~r~~~~ 211 (314)
.++|++|++|+...... +...+.+|++|++|+.|+.+.
T Consensus 86 ~iiDllailP~~~~~~~-~~~lr~lRvlRllRv~Rllrl 123 (147)
T 2kyh_A 86 TLYEIPALVPAGLLALI-EGHLAGLGLFRLVRLLRFLRI 123 (147)
T ss_dssp STTTHHHHCCHHHHHHH-HHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHH
Confidence 48999999999754322 221234444444444444443
No 28
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.83 E-value=1e-05 Score=63.01 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhhheeeeeeecccccCCchhhhhHHHHHHHHHHHHHhhccceeEEecCCeEEechHHHHHHHHhccc
Q psy4746 93 SWLCLVTLSYLYNCFVIPLRVTFPYQTRSNLITWFVFDYVMDVIYILDLLLIKPRLIYLDDGFWIKDSKLTRIQYRRKLQ 172 (314)
Q Consensus 93 ~Wd~~~~~~~i~~~~~~p~~i~f~~~~~~~~~~~~~i~~~~d~~f~~Divl~~~~t~y~~~g~iv~~~~~i~~~Yi~~~~ 172 (314)
.+|.++.+.++.+....-..- .+...++....+..+|.++..+|.+|++++. ..+ + .+++|++ +
T Consensus 7 ~f~~~i~~lIlls~~~~~~et-~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl-~~~--~----------~~~~y~~--~ 70 (132)
T 1ors_C 7 LVELGVSYAALLSVIVVVVEY-TMQLSGEYLVRLYLVDLILVIILWADYAYRA-YKS--G----------DPAGYVK--K 70 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH-HHT--T----------STTTTTT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC--C----------CHHHHHH--H
Confidence 457777777777666554331 1111122234566889999999999999843 221 1 1357887 7
Q ss_pred chhhhcccchhHHHHHhhccccceeeehhhhhHhHHHH
Q psy4746 173 YKNDLLSLMPFDLLYFVFGFECTFLRLPRLIKIQTFWE 210 (314)
Q Consensus 173 f~~Dlis~lP~~~~~~~~~~~~~~lrl~rllr~~r~~~ 210 (314)
.++|+++++|+...... +...+.+|++|++|+.|+.+
T Consensus 71 niiDllailp~~~~~~~-~~~l~~lr~lRllRv~Rvlk 107 (132)
T 1ors_C 71 TLYEIPALVPAGLLALI-EGHLAGLGLFRLVRLLRFLR 107 (132)
T ss_dssp CGGGTGGGSCHHHHHHH-HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHH
Confidence 89999999998754432 21113344444444444443
No 29
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=96.74 E-value=0.00035 Score=58.31 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=34.6
Q ss_pred hhHHHHhhhChHHHHHhHHHHHHHhHHhCCCchhhhcccccccccce
Q psy4746 36 RDIIATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWE 82 (314)
Q Consensus 36 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~w~~~~~~ 82 (314)
|++++++++++..|+++++.+.+||+.+++|+.+++|++.|++|.|.
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~ 47 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWS 47 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999988775
No 30
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=95.32 E-value=0.0046 Score=50.76 Aligned_cols=43 Identities=12% Similarity=0.545 Sum_probs=38.0
Q ss_pred HHhhhChHHHHHhHHHHHHHhHHhCCCchhhhcccccccccce
Q psy4746 40 ATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWE 82 (314)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~w~~~~~~ 82 (314)
+++++++.+|+++++.+.+||+.+++|+.+++|++.++++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~ 43 (198)
T 2ptm_A 1 GAMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR 43 (198)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 5788999999999999999999999999999999999988775
No 31
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=94.95 E-value=0.029 Score=44.09 Aligned_cols=63 Identities=6% Similarity=0.024 Sum_probs=41.5
Q ss_pred hcccchhhhHHHHhhhhhhHhh----hhcchh------HHHH----hhhChHHHHHhHHHHHHHhHHhCCCchhhhc
Q psy4746 10 LTSVNNWELSTCYQRWLTPFHY----CSQIRD------IIAT----ATKGQTEYRKLMDETLDYLRRLNVPPRIRER 72 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~----~g~i~~------~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 72 (314)
.+|.|+.+.++++.-.++|+.+ +|++.+ ..+. .++.+.+.++++++.++++++++.|+++++|
T Consensus 72 ~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 72 FSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 5799999999999999999984 333332 2222 2344455567788889999999999988775
No 32
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=94.71 E-value=0.0085 Score=49.30 Aligned_cols=43 Identities=9% Similarity=0.451 Sum_probs=38.0
Q ss_pred HHhhhChHHHHHhHHHHHHHhHHhCCCchhhhcccccccccce
Q psy4746 40 ATATKGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWE 82 (314)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~w~~~~~~ 82 (314)
+++++++..|+++++.+.+||+.+++|+.+++|++.++++.|.
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~ 44 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ 44 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999999999999988775
No 33
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=88.77 E-value=0.13 Score=39.67 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=25.3
Q ss_pred hcccchhhhHHHHhhhhhhHhhhhcchhHHHH
Q psy4746 10 LTSVNNWELSTCYQRWLTPFHYCSQIRDIIAT 41 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~i~~ 41 (314)
.+|.|+.|.++++.-.++|+.+.|-+-+.+++
T Consensus 63 i~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~ 94 (137)
T 4h33_A 63 IVPVTPIGRILASIMMLFGIAFIGMITSTITN 94 (137)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999965544444443
No 34
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=77.84 E-value=1.5 Score=43.74 Aligned_cols=46 Identities=11% Similarity=0.279 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCChhhHHHHHHHHHHHHHHhhhhc
Q psy4746 267 AYIRCFYFATKTATSIGKNPRPTNEMEYVFMTVSWLLGVFVFAVLI 312 (314)
Q Consensus 267 ~Y~~s~ywa~~t~ttvG~di~p~t~~E~~~~i~~~l~G~~~~a~ii 312 (314)
....++++++.+++..|.+..|.+...|++.+++++++.++.+.-.
T Consensus 563 ~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yt 608 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYT 608 (823)
T ss_dssp HHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHH
Confidence 3668999999999888888999999999999999999988877644
No 35
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=61.44 E-value=3.7 Score=32.11 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=27.6
Q ss_pred hcccchhhhHHHHhhhhhhHhh----hhcchhHHHHhhhC
Q psy4746 10 LTSVNNWELSTCYQRWLTPFHY----CSQIRDIIATATKG 45 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~----~g~i~~~i~~~~~~ 45 (314)
.+|.|+.+.++++...++|+.+ +|.+.+.+.+..+.
T Consensus 104 i~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~ 143 (155)
T 2a9h_A 104 LYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQE 143 (155)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999994 55666666654443
No 36
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=55.06 E-value=6.3 Score=29.30 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=27.0
Q ss_pred hcccchhhhHHHHhhhhhhHhh----hhcchhHHHHhh
Q psy4746 10 LTSVNNWELSTCYQRWLTPFHY----CSQIRDIIATAT 43 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~----~g~i~~~i~~~~ 43 (314)
.+|.|+.+.++++.-.+.|+.+ +|++.+.+.+..
T Consensus 81 i~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 81 LYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999994 556666665543
No 37
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=54.97 E-value=4.3 Score=30.89 Aligned_cols=32 Identities=9% Similarity=0.084 Sum_probs=25.1
Q ss_pred hcccchhhhHHHHhhhhhhHhh----hhcchhHHHH
Q psy4746 10 LTSVNNWELSTCYQRWLTPFHY----CSQIRDIIAT 41 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~----~g~i~~~i~~ 41 (314)
.+|.|+.+-++++.-.++|+.+ +|.+.+.+.+
T Consensus 60 ~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 60 LYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred CcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999883 5555554444
No 38
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=50.66 E-value=2.4 Score=33.52 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=28.4
Q ss_pred hcccchhhhHHHHhhhhhhHh----hhhcchhHHHHhhhCh
Q psy4746 10 LTSVNNWELSTCYQRWLTPFH----YCSQIRDIIATATKGQ 46 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~----~~g~i~~~i~~~~~~~ 46 (314)
.+|.|+.+.++++.-.++|+. .+|.+.+.+.+..+.+
T Consensus 87 i~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 127 (166)
T 3pjs_K 87 LYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQ 127 (166)
T ss_dssp SCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHH
T ss_pred CCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999988 4666666666544433
No 39
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=43.37 E-value=9.5 Score=27.96 Aligned_cols=24 Identities=0% Similarity=-0.108 Sum_probs=20.8
Q ss_pred hcccchhhhHHHHhhhhhhHhhhh
Q psy4746 10 LTSVNNWELSTCYQRWLTPFHYCS 33 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~g 33 (314)
..|.|+.+.++++.-.++|+.+++
T Consensus 69 i~P~t~~gr~~~~~~~~~G~~~~~ 92 (114)
T 2q67_A 69 FSPQTDFGKIFTILYIFIGIGLVF 92 (114)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHhHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999543
No 40
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=33.51 E-value=76 Score=29.64 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=34.6
Q ss_pred chhHHHHHHHHHHHHhhccCC---CCCCCChhhHHHHHHHHHHHHH
Q psy4746 264 KGNAYIRCFYFATKTATSIGK---NPRPTNEMEYVFMTVSWLLGVF 306 (314)
Q Consensus 264 ~~~~Y~~s~ywa~~t~ttvG~---di~p~t~~E~~~~i~~~l~G~~ 306 (314)
..++...|++-+++..||.|+ |...-++.-..+.++.|++|.+
T Consensus 303 ~~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~ 348 (494)
T 3pjz_A 303 PYDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGC 348 (494)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCC
Confidence 457888999999999999994 7776677777888888888753
No 41
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=33.16 E-value=48 Score=26.87 Aligned_cols=12 Identities=0% Similarity=0.207 Sum_probs=7.4
Q ss_pred HHHHHhHHhHhh
Q psy4746 240 LNACAYYEISVR 251 (314)
Q Consensus 240 ~~aC~~~~i~~~ 251 (314)
+..++|+.+...
T Consensus 166 ~~~s~y~~~~t~ 177 (223)
T 1orq_C 166 VFDALWWAVVTA 177 (223)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhHHHhHHhHH
Confidence 455777776543
No 42
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=28.68 E-value=28 Score=24.72 Aligned_cols=26 Identities=8% Similarity=-0.120 Sum_probs=21.9
Q ss_pred hcccchhhhHHHHhhhhhhHhhhhcc
Q psy4746 10 LTSVNNWELSTCYQRWLTPFHYCSQI 35 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~g~i 35 (314)
.+|.++.+.++++.-.++|+.+.+-.
T Consensus 60 i~P~t~~gr~~~~~~~l~G~~~~~~~ 85 (103)
T 2k1e_A 60 RYPVTEEGRKVAEQVMKAGIEVFALV 85 (103)
T ss_dssp SCCCSSSCTHHHHHHHHHHHHHHHHT
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999965433
No 43
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=27.61 E-value=25 Score=26.32 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=14.2
Q ss_pred ceeeehhhhhHhHHHHHHHHHHH
Q psy4746 195 TFLRLPRLIKIQTFWEFCNHFDS 217 (314)
Q Consensus 195 ~~lrl~rllr~~r~~~~~~~l~~ 217 (314)
+.+|+.|++|+.|+.++...++.
T Consensus 95 r~lRllRv~Rvlkl~r~~~~l~~ 117 (132)
T 1ors_C 95 GLFRLVRLLRFLRILLIISRGSK 117 (132)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 45666666666666666555443
No 44
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=25.94 E-value=44 Score=29.30 Aligned_cols=33 Identities=0% Similarity=-0.268 Sum_probs=25.6
Q ss_pred hhcccchhhhHHHHhhhhhhHhh----hhcchhHHHH
Q psy4746 9 CLTSVNNWELSTCYQRWLTPFHY----CSQIRDIIAT 41 (314)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~----~g~i~~~i~~ 41 (314)
-.+|+|+.|.++++..++.|+.+ +|.+.+...+
T Consensus 180 d~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 180 DTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999984 5555544443
No 45
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=22.83 E-value=52 Score=21.15 Aligned_cols=33 Identities=6% Similarity=-0.216 Sum_probs=25.5
Q ss_pred chhcccchhhhHHHHhhhhhhHhhhhcchhHHHH
Q psy4746 8 HCLTSVNNWELSTCYQRWLTPFHYCSQIRDIIAT 41 (314)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~i~~ 41 (314)
.|-.|.++ ||.-....-.+|++++|-++-++.-
T Consensus 21 ~~~KPd~~-Ef~~iak~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 21 VTKKPNWA-TYKRAAKITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp HSCCCCTT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778665 8988888888899988877766654
No 46
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=20.63 E-value=68 Score=21.54 Aligned_cols=24 Identities=0% Similarity=-0.155 Sum_probs=20.9
Q ss_pred hcccchhhhHHHHhhhhhhHhhhh
Q psy4746 10 LTSVNNWELSTCYQRWLTPFHYCS 33 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~g 33 (314)
..|.|+.+.++++.-.+.|+...+
T Consensus 48 i~P~t~~~r~~~~~~~~~G~~~~~ 71 (82)
T 3ldc_A 48 YSPHTPLGMYFTCTLIVLGIGTFA 71 (82)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHH
Confidence 579999999999999999998544
Done!