RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4746
(314 letters)
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 39.7 bits (93), Expect = 2e-05
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 229 RTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIG-KNPR 287
R L ++ ++ ++ I +G ++ Y+ T ++G +
Sbjct: 4 RILLLVLAVIIYGTAGFHFI---------------EGESWTVSLYWTFVTIATVGYGDYS 48
Query: 288 PTNEMEYVFMTVSWLLGVFVFAVLIGQ 314
P+ + F +LG+ FAV + +
Sbjct: 49 PSTPLGMYFTVTLIVLGIGTFAVAVER 75
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 36.9 bits (84), Expect = 0.001
Identities = 5/50 (10%), Positives = 21/50 (42%)
Query: 46 QTEYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQHTLGYWYISWL 95
+ +Y++ + Y+ +P R+++ ++ ++ + + L
Sbjct: 4 RRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGEL 53
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal
domain {Leishmania mexicana [TaxId: 5665]}
Length = 258
Score = 33.0 bits (75), Expect = 0.037
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 15/98 (15%)
Query: 203 IKIQTFWEFCNHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYD 262
KI+ N + S ++ VAR + + +I +
Sbjct: 138 CKIENHQGVQNIDSIIEESDGIM-VARGDLGV-EIPAEKVVVAQKILIS----------- 184
Query: 263 GKGNAYIRCFYFATKTATSIGKNPRPT-NEMEYVFMTV 299
K N + AT+ S+ NPRPT E+ V V
Sbjct: 185 -KCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAV 221
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 31.5 bits (71), Expect = 0.040
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 215 FDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCFYF 274
+ L + V A + L A Y ++ + + ++ F+F
Sbjct: 17 YYWALKVSWPVFFASLAALFVVNNTLFALLYQLG--------DAPIANQSPPGFVGAFFF 68
Query: 275 ATKTATSIG-KNPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313
+ +T ++G + P + T+ +G+ A+ G
Sbjct: 69 SVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTG 108
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 28.4 bits (63), Expect = 0.41
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 268 YIRCFYFATKTATSIG-KNPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313
Y R +++ +TAT++G + P V + G+ F ++
Sbjct: 41 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTA 87
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 28.0 bits (62), Expect = 0.73
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 213 NHFDSVLASPYVVRVARTLTYMIYLVHLNACAYYEISVREGLGINSWVYDGKGNAYIRCF 272
+H+ +L + V + + L A AY + + + ++ F
Sbjct: 14 DHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDV--------IENARPGSFTDAF 65
Query: 273 YFATKTATSIG-KNPRPTNEMEYVFMTVSWLLGVFVFAVLIG 313
+F+ +T +IG P + +T+ L G+ AV
Sbjct: 66 FFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAAS 107
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 27.1 bits (60), Expect = 0.94
Identities = 6/46 (13%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 50 RKLMDETLDYLRR--LNVPPRIRERVKQ--WFSFTWEQQHTLGYWY 91
R+++++ ++ + E K F+F ++ +Y
Sbjct: 28 RRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYY 73
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine
max), isozyme L1 [TaxId: 3847]}
Length = 143
Score = 26.3 bits (58), Expect = 2.9
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 257 NSWVYDGKGNAYIRCFYFATKT 278
NSWVY+ K +R F FA T
Sbjct: 122 NSWVYNTKLYKSVRIF-FANHT 142
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 265
Score = 26.9 bits (59), Expect = 3.3
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 264 KGNAYIRCFYFATKTATSIGKNPRPTN-EMEYVFMTV 299
K N + AT+ S+ NPRPT E+ V +
Sbjct: 185 KSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAI 221
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 26.8 bits (59), Expect = 4.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 44 KGQTEYRKLMDETLDYLRRLNVPPRIRERVKQWF 77
K EY++L+D+ + LR L R+ E +++
Sbjct: 444 KLLDEYKELLDQIAELLRILGSADRLMEVIREEL 477
>d2b1xa2 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase alpha
subunit, C-domain {Rhodococcus sp. ncimb12038 [TaxId:
92694]}
Length = 279
Score = 26.3 bits (57), Expect = 5.4
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Query: 48 EYRKLMDETLDYLRRLNVPPRIRERVKQWFSFTWEQQHTLGYWYISWLCLVTLSYLYNCF 107
E+ L + ++ L R P E+V+ + + I +
Sbjct: 102 EFMGLPENIVEELERRLTP----EQVEIFRPTAFIHGTVFPNLSIGNFLMGKDHLSAPTA 157
Query: 108 VIPLRVTFPYQTRSNLITWFVF 129
+ LR+ P + F
Sbjct: 158 FLTLRLWHPLGPDKMEVMSFFL 179
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal
domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 282
Score = 26.2 bits (57), Expect = 5.5
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 247 EISVREGLGINSWVYDGKGNAYIRCFYFATKTATSIGKNPRPTN-EMEYVFMTV 299
EI + + + N + AT+ S+ K PRPT E V V
Sbjct: 186 EIPAEKVFLAQKMIIG-RCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAV 238
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.330 0.143 0.477
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,303,806
Number of extensions: 63057
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 18
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.4 bits)