Query psy4747
Match_columns 414
No_of_seqs 234 out of 1783
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:36:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i53_A Cyclin K; cell cycle, t 100.0 3E-48 1E-52 373.0 23.2 244 39-283 11-254 (258)
2 3rgf_B Cyclin-C; protein kinas 100.0 2.7E-48 9.1E-53 379.5 15.9 267 20-311 2-273 (285)
3 2ivx_A Cyclin-T2; transcriptio 100.0 1.3E-45 4.6E-50 354.7 22.5 236 40-283 2-243 (257)
4 2pk2_A Cyclin-T1, protein TAT; 100.0 3.1E-44 1.1E-48 361.0 14.1 238 38-283 7-250 (358)
5 1zp2_A RNA polymerase II holoe 100.0 9E-43 3.1E-47 331.0 15.7 224 36-287 3-227 (235)
6 1jkw_A Cyclin H; cell cycle, c 100.0 1.6E-39 5.5E-44 322.6 18.7 229 35-281 3-262 (323)
7 3g33_B CCND3 protein; Ser/Thr 100.0 4.7E-37 1.6E-41 302.8 18.1 213 55-285 57-272 (306)
8 1g3n_C V-cyclin; cyclin-depend 100.0 1.6E-35 5.4E-40 284.8 16.1 221 44-281 24-249 (257)
9 2b9r_A Human cyclin B1; cell c 100.0 2.8E-35 9.4E-40 285.1 16.7 221 33-282 2-227 (269)
10 2cch_B Cyclin A2, cyclin-A; co 100.0 2.2E-35 7.6E-40 284.3 14.6 221 36-282 5-230 (260)
11 2w96_A G1/S-specific cyclin-D1 100.0 8.8E-35 3E-39 281.7 18.5 210 59-285 47-262 (271)
12 2f2c_A Cyclin homolog, V-cycli 100.0 6.1E-34 2.1E-38 273.3 18.1 219 45-281 26-249 (254)
13 1f5q_B Gamma herpesvirus cycli 100.0 3.5E-32 1.2E-36 261.0 18.6 210 48-281 31-243 (252)
14 1c9b_A General transcription f 100.0 5.5E-31 1.9E-35 245.0 19.1 187 68-281 4-190 (207)
15 1w98_B Cyclin E, G1/S-specific 100.0 6.3E-31 2.2E-35 256.3 15.1 195 61-283 42-245 (283)
16 1ais_B TFB TFIIB, protein (tra 99.9 1.7E-26 5.9E-31 213.4 19.5 185 68-279 8-194 (200)
17 3k7a_M Transcription initiatio 99.9 1E-24 3.6E-29 218.1 8.1 183 70-279 127-321 (345)
18 4bbr_M Transcription initiatio 99.8 3.5E-19 1.2E-23 177.8 8.1 184 70-280 127-322 (345)
19 1ais_B TFB TFIIB, protein (tra 97.9 2.2E-05 7.6E-10 71.5 8.6 90 73-175 109-198 (200)
20 2pmi_B PHO85 cyclin PHO80, ami 97.7 0.00014 4.6E-09 70.3 10.4 102 73-188 78-183 (293)
21 1c9b_A General transcription f 97.4 0.00034 1.2E-08 64.0 7.9 86 73-171 103-188 (207)
22 3k7a_M Transcription initiatio 95.0 0.004 1.4E-07 61.6 0.0 67 73-139 236-302 (345)
23 4bbr_M Transcription initiatio 94.9 0.0046 1.6E-07 61.3 0.0 68 73-140 236-303 (345)
24 3h4c_A Transcription factor TF 93.4 1.2 4.3E-05 40.4 12.6 147 72-235 15-169 (260)
25 1zp2_A RNA polymerase II holoe 93.4 0.52 1.8E-05 43.5 10.8 92 180-279 32-126 (235)
26 2b9r_A Human cyclin B1; cell c 92.4 0.65 2.2E-05 43.8 10.0 88 181-279 43-130 (269)
27 3rgf_B Cyclin-C; protein kinas 92.0 0.75 2.6E-05 43.8 10.1 94 180-279 47-149 (285)
28 1g3n_C V-cyclin; cyclin-depend 90.9 0.78 2.7E-05 42.9 8.8 88 181-279 56-143 (257)
29 2cch_B Cyclin A2, cyclin-A; co 90.9 0.62 2.1E-05 43.6 8.1 88 181-279 44-131 (260)
30 2f2c_A Cyclin homolog, V-cycli 90.8 0.92 3.2E-05 42.3 9.1 90 180-280 56-145 (254)
31 2w96_A G1/S-specific cyclin-D1 90.7 1.3 4.5E-05 41.6 10.3 88 181-279 62-149 (271)
32 3g33_B CCND3 protein; Ser/Thr 90.4 0.95 3.3E-05 43.6 9.1 89 181-280 76-164 (306)
33 1w98_B Cyclin E, G1/S-specific 90.0 1.1 3.6E-05 42.7 9.0 88 181-279 55-143 (283)
34 2ivx_A Cyclin-T2; transcriptio 89.0 1.1 3.8E-05 41.7 8.1 56 180-239 35-90 (257)
35 2i53_A Cyclin K; cell cycle, t 88.4 1.4 4.8E-05 40.9 8.4 56 180-239 45-100 (258)
36 1jkw_A Cyclin H; cell cycle, c 88.4 1.2 4.2E-05 43.2 8.2 56 181-240 62-119 (323)
37 2pk2_A Cyclin-T1, protein TAT; 87.0 1.2 4.1E-05 43.9 7.3 57 179-239 41-97 (358)
38 1f5q_B Gamma herpesvirus cycli 86.5 2.5 8.7E-05 39.5 8.9 88 181-279 54-141 (252)
39 4ell_A Retinoblastoma-associat 74.4 5.9 0.0002 39.8 7.1 69 72-140 282-353 (411)
40 3m03_A ORC6, origin recognitio 73.2 4 0.00014 32.6 4.4 61 76-137 6-71 (95)
41 2r7g_A PP110, retinoblastoma-a 72.4 6.7 0.00023 38.5 6.8 69 73-141 219-290 (347)
42 4elj_A Retinoblastoma-associat 65.3 9.2 0.00031 40.7 6.4 64 76-140 8-76 (656)
43 2qdj_A Retinoblastoma-associat 63.0 7.6 0.00026 37.4 4.9 64 76-139 6-73 (304)
44 4elj_A Retinoblastoma-associat 62.2 16 0.00055 38.8 7.6 70 72-141 527-599 (656)
45 2r7g_A PP110, retinoblastoma-a 59.6 44 0.0015 32.7 9.7 86 153-241 165-279 (347)
46 2pmi_B PHO85 cyclin PHO80, ami 53.8 68 0.0023 30.6 9.7 89 178-279 76-167 (293)
47 3m03_A ORC6, origin recognitio 48.4 99 0.0034 24.4 8.5 70 200-279 18-92 (95)
48 4ell_A Retinoblastoma-associat 25.4 1.9E+02 0.0064 28.9 8.0 43 199-241 299-343 (411)
49 2wh0_Q Pkcev3, protein kinase 20.5 72 0.0025 19.2 2.3 17 157-173 13-29 (31)
No 1
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3e-48 Score=372.98 Aligned_cols=244 Identities=72% Similarity=1.279 Sum_probs=227.6
Q ss_pred ccccCCcCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhh
Q psy4747 39 TMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCC 118 (414)
Q Consensus 39 ~~~~W~ft~eeL~~~pS~~~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~AC 118 (414)
...+|||+++|++++||+.+|++.+.|..+|..+++||.++|.+|+|+++|+++|++|||||+.++++++.++++||+||
T Consensus 11 ~~~~w~~~~~el~~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ac 90 (258)
T 2i53_A 11 TKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACC 90 (258)
T ss_dssp CSSSCCCCGGGGGGCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred hccCCccCHHHHHhCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCCCCCHHHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCCChhHHH
Q psy4747 119 LFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLE 198 (414)
Q Consensus 119 LfLA~K~EE~p~~l~~lv~v~~~~~~~~~~~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~~~~~~~ 198 (414)
||||||+||.++++++|+++++.++.++.|..++++.+++|++||+.||++|+|++.+++|++||.+|++.++.+.+..+
T Consensus 91 L~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~ 170 (258)
T 2i53_A 91 LFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQ 170 (258)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHH
T ss_pred HHHHHccccccccHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHH
Confidence 99999999999999999999887777767766666678999999999999999999999999999999999998876566
Q ss_pred HHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhcCCCHHHHHHHHHHHHHHH
Q psy4747 199 KMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLY 278 (414)
Q Consensus 199 ~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~~vt~~~l~~~~~~il~ly 278 (414)
++.+.|++++++++.++.++.|+|+.||+|||++|++++|.++++|.... ....||+.|..++++++|.+|+++|+++|
T Consensus 171 ~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~-~~~~W~~~~~~~~~~~~l~~~~~~il~ly 249 (258)
T 2i53_A 171 KLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKP-MYRRWWEQFVQDVPVDVLEDICHQILDLY 249 (258)
T ss_dssp HHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSC-CSSCGGGGTSSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCC-CcccHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998652 45689999988999999999999999999
Q ss_pred hhccc
Q psy4747 279 SQSQQ 283 (414)
Q Consensus 279 ~~~~~ 283 (414)
.+.+.
T Consensus 250 ~~~~~ 254 (258)
T 2i53_A 250 SQGKQ 254 (258)
T ss_dssp SSSCC
T ss_pred hcccc
Confidence 87643
No 2
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.7e-48 Score=379.50 Aligned_cols=267 Identities=27% Similarity=0.417 Sum_probs=229.0
Q ss_pred CcCCCcccccchhhhhcccccccCCcCHHHHhcCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy4747 20 GVKGNSVLFEHQICLIESVTMPYWYFDKKDIRNSPS-FREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFH 98 (414)
Q Consensus 20 ~~~~~~~~~~~~~~~~~s~~~~~W~ft~eeL~~~pS-~~~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fd 98 (414)
++.+||| +|+|..+|+|+++||.+.++ ..++++.++|.++|..+++||.++|.+|+|+++|+++|++|||
T Consensus 2 ~m~~~~w---------~Ss~~~~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~ 72 (285)
T 3rgf_B 2 AMAGNFW---------QSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFK 72 (285)
T ss_dssp TTTTCGG---------GSHHHHHHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred Cccchhh---------cccccCCcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3567888 78899999999999977655 6789999999999999999999999999999999999999999
Q ss_pred HHhhcCccccCCceehhhhhhhhhccccCCCC-CHHHHHHHHhhhcccc-c--ccccCCCcHHHHHHHHHHHHHHcCCcc
Q psy4747 99 RFYMYHSFKTFPRYVTASCCLFLAGKVEETPK-KCKDVIKTARMLVDDK-K--FKTFGDDPREEVMTLERILLQTIKFDL 174 (414)
Q Consensus 99 RF~~~~si~~~~l~lVa~ACLfLA~K~EE~p~-~l~~lv~v~~~~~~~~-~--~~~~~~~~k~~Il~~E~~IL~~L~FdL 174 (414)
|||+++++.++++++||+||||||||+||+++ .+++|+.++..+.... . +...+...+++|++||+.||++|||+|
T Consensus 73 RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l 152 (285)
T 3rgf_B 73 RFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCL 152 (285)
T ss_dssp HHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCe
Confidence 99999999999999999999999999999987 6899998876542110 0 011112358999999999999999999
Q ss_pred cccCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccch
Q psy4747 175 QVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRW 254 (414)
Q Consensus 175 ~v~~P~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W 254 (414)
.+++|++||.+|++.++.+. ++.+.||+++++++.+++|+.|+|+.||+||||+|++++|.+. ..|
T Consensus 153 ~v~~P~~fL~~~~~~l~~~~----~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~----------~~W 218 (285)
T 3rgf_B 153 IVYHPYRPLLQYVQDMGQED----MLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA----------RQW 218 (285)
T ss_dssp CCCCSHHHHHHHHHHHTCHH----HHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC----------HHH
T ss_pred EeCChHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh----------hhH
Confidence 99999999999999998754 7899999999999999999999999999999999999988643 479
Q ss_pred hhHhhcCCCHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy4747 255 WEMFVEDMTMDLLEDICHQVLDLYSQSQQQASQQDSPPQTQPEPSTKPPPQSHLPPS 311 (414)
Q Consensus 255 ~~~~~~~vt~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 311 (414)
|+.| ++++++|.+|+++|+++|.++...+++.+.+....|.++++++|+.++++.
T Consensus 219 ~~~~--~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 273 (285)
T 3rgf_B 219 FAEL--SVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQG 273 (285)
T ss_dssp HHTS--CSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCCCCCCC-------
T ss_pred HHHH--CCCHHHHHHHHHHHHHHHHhcccCchhhhHHHHHHhCCCCCCCCCCCCCCC
Confidence 9998 899999999999999999999998888777777777777775555544444
No 3
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1.3e-45 Score=354.70 Aligned_cols=236 Identities=31% Similarity=0.591 Sum_probs=212.1
Q ss_pred cccCCcCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhh
Q psy4747 40 MPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCL 119 (414)
Q Consensus 40 ~~~W~ft~eeL~~~pS~~~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACL 119 (414)
.++|||+++||+++||+.+|++.+.|..+|..+++||.++|.+|+|+++|+++|++|||||++++++.++++++||+|||
T Consensus 2 ~~~w~~t~e~l~~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL 81 (257)
T 2ivx_A 2 SSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTAL 81 (257)
T ss_dssp CGGGSCCHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred CCCeeecHHHHHhChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCCHHHHHHHHhhhccccccc-----ccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCCCh
Q psy4747 120 FLAGKVEETPKKCKDVIKTARMLVDDKKFK-----TFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDK 194 (414)
Q Consensus 120 fLA~K~EE~p~~l~~lv~v~~~~~~~~~~~-----~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~~~ 194 (414)
|||||+||.++++++|+++++.+..+.... ..+...+++|++||+.||++|+|+|.+++|+.||.+|++.++.+.
T Consensus 82 ~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~ 161 (257)
T 2ivx_A 82 FLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASK 161 (257)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCH
T ss_pred HHHhccccCCcCHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCc
Confidence 999999999999999999987655432100 000113899999999999999999999999999999999998765
Q ss_pred hHHHHHHHHHHHHHHhhh-cCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhcCCCHHHHHHHHHH
Q psy4747 195 TKLEKMLQMAWTFVNDSL-CTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQ 273 (414)
Q Consensus 195 ~~~~~v~~~A~~ll~dsl-~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~~vt~~~l~~~~~~ 273 (414)
++.+.||+++++++ .+++|+.|+|+.||+||||+|+.++|.++|+.. .+..||+.|..++++++|.+|+++
T Consensus 162 ----~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~----~~~~W~~~~~~~~~~~~l~~~~~~ 233 (257)
T 2ivx_A 162 ----DLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVST----DGKHWWEYVDPTVTLELLDELTHE 233 (257)
T ss_dssp ----HHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCT----TCCCGGGGTCSSCCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCC----CCchHHHHhCCCCCHHHHHHHHHH
Confidence 68899999999998 488999999999999999999999998887643 345899999888999999999999
Q ss_pred HHHHHhhccc
Q psy4747 274 VLDLYSQSQQ 283 (414)
Q Consensus 274 il~ly~~~~~ 283 (414)
|+++|++...
T Consensus 234 i~~~~~~~~~ 243 (257)
T 2ivx_A 234 FLQILEKTPN 243 (257)
T ss_dssp HHHHHHTSHH
T ss_pred HHHHHHhChH
Confidence 9999987643
No 4
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=3.1e-44 Score=361.03 Aligned_cols=238 Identities=33% Similarity=0.604 Sum_probs=212.2
Q ss_pred cccccCCcCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhh
Q psy4747 38 VTMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASC 117 (414)
Q Consensus 38 ~~~~~W~ft~eeL~~~pS~~~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~A 117 (414)
.+..+|||+++||+++||+.+|++.+.|..+|..+++||.+++.+|+|+++|+++|++||||||+++++.++++++|++|
T Consensus 7 ~~~~~wlft~eeL~~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~a 86 (358)
T 2pk2_A 7 NNNKRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPA 86 (358)
T ss_dssp -CCSSSSCCSHHHHTCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHH
T ss_pred CCCCCceeCHHHHHhChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCCCCCHHHHHHHHhhhccccccc-----ccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCC
Q psy4747 118 CLFLAGKVEETPKKCKDVIKTARMLVDDKKFK-----TFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKG 192 (414)
Q Consensus 118 CLfLA~K~EE~p~~l~~lv~v~~~~~~~~~~~-----~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~ 192 (414)
|||||||+||.++++++|+++++.+..+.... ..+...+++|++||+.||++|+|+|.+++|+.||.+|++.++.
T Consensus 87 cLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~ 166 (358)
T 2pk2_A 87 ALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRA 166 (358)
T ss_dssp HHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTC
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCC
Confidence 99999999999999999998887654321100 0001237899999999999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHhhh-cCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhcCCCHHHHHHHH
Q psy4747 193 DKTKLEKMLQMAWTFVNDSL-CTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDIC 271 (414)
Q Consensus 193 ~~~~~~~v~~~A~~ll~dsl-~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~~vt~~~l~~~~ 271 (414)
+. ++.+.||+|+++++ .+++|+.|+|+.||+||||+|+.+++.++|+.. .+..||+.|..++++++|.+|+
T Consensus 167 ~~----~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~----~~~~W~~~~~~~vt~~~l~~i~ 238 (358)
T 2pk2_A 167 SK----DLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVST----DGKHWWEYVDATVTLELLDELT 238 (358)
T ss_dssp CH----HHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCS----SSCCTTTTSCSSCCHHHHHHHH
T ss_pred CH----HHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCc----cccchHHHHhccCCHHHHHHHH
Confidence 65 68999999999998 478899999999999999999999998887532 2458999998889999999999
Q ss_pred HHHHHHHhhccc
Q psy4747 272 HQVLDLYSQSQQ 283 (414)
Q Consensus 272 ~~il~ly~~~~~ 283 (414)
++|+++|+....
T Consensus 239 ~~il~~y~~~~~ 250 (358)
T 2pk2_A 239 HEFLQILEKTPN 250 (358)
T ss_dssp HHHHHHTTTCTT
T ss_pred HHHHHHHHhCcc
Confidence 999999987654
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-43 Score=331.03 Aligned_cols=224 Identities=20% Similarity=0.296 Sum_probs=199.9
Q ss_pred cccccccCCcCHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccc-CCceeh
Q psy4747 36 ESVTMPYWYFDKKDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKT-FPRYVT 114 (414)
Q Consensus 36 ~s~~~~~W~ft~eeL~~~pS~~~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~-~~l~lV 114 (414)
+|+|.++|+|+++||.++|+..++ + |..+++||.++|.+|+|++.|+++|++|||||++++++++ +++++|
T Consensus 3 ~Ss~~~~w~ft~~~l~~~~~~~~~-----~---R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv 74 (235)
T 1zp2_A 3 ASSQLTQLFLSTDLESLEPTCLSK-----D---TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEAL 74 (235)
T ss_dssp CCGGGTGGGSCSSCTTSSCCCSCH-----H---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHH
T ss_pred ccCCCCCCccCHHHHHHCCcchhH-----H---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHH
Confidence 689999999999999988775532 2 9999999999999999999999999999999999999999 999999
Q ss_pred hhhhhhhhccccCCCCCHHHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCCCh
Q psy4747 115 ASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDK 194 (414)
Q Consensus 115 a~ACLfLA~K~EE~p~~l~~lv~v~~~~~~~~~~~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~~~ 194 (414)
|+||||||||+||.+++++||+.++++++.+ .+ ...+++|++||+.||++|+|++.+++|+.||.+|++.++.+.
T Consensus 75 ~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~-~~----~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~ 149 (235)
T 1zp2_A 75 VATCIYLSCKVEECPVHIRTICNEANDLWSL-KV----KLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQ 149 (235)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHTTCCC-SS----CCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHhccccCcccHHHHHHHHHHHccc-hh----hccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCH
Confidence 9999999999999999999999998765432 11 235899999999999999999999999999999999887665
Q ss_pred hHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhcCCCHHHHHHHHHHH
Q psy4747 195 TKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQV 274 (414)
Q Consensus 195 ~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~~vt~~~l~~~~~~i 274 (414)
++.+.|++++++++.++.++.|+|+.||+||||+|++++|.+.|.| ..||+ ++++++|.+|+++|
T Consensus 150 ----~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~-------~~~~~----~~~~~~i~~~~~~i 214 (235)
T 1zp2_A 150 ----KQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKL-------LDLIK----STDAFKVILCVQRI 214 (235)
T ss_dssp ----HHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHHH-------HHHCC----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCCC-------cchhh----cCCHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999998765533 25665 67999999999999
Q ss_pred HHHHhhcccccCC
Q psy4747 275 LDLYSQSQQQASQ 287 (414)
Q Consensus 275 l~ly~~~~~~~~~ 287 (414)
+++|..++...++
T Consensus 215 ~~ly~~~~~~~~~ 227 (235)
T 1zp2_A 215 ISIYYFEDIEAAA 227 (235)
T ss_dssp HHHHTSSSHHHHT
T ss_pred HHHHhhCCcCchh
Confidence 9999998775544
No 6
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=1.6e-39 Score=322.64 Aligned_cols=229 Identities=19% Similarity=0.294 Sum_probs=190.1
Q ss_pred hcccccccCCcCH-HHHhcC-------------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHH
Q psy4747 35 IESVTMPYWYFDK-KDIRNS-------------------PSFREGIDYETEQRYRREGARFIIDCGTKMD--LGYNTMAT 92 (414)
Q Consensus 35 ~~s~~~~~W~ft~-eeL~~~-------------------pS~~~gis~e~E~~~R~~~v~~I~~v~~~Lk--L~~~t~~t 92 (414)
-+|+|.++|+|++ ++|... ++..+|++.++|..+|..+++||.++|.+|+ |++.|+++
T Consensus 3 ~~Stq~~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~t 82 (323)
T 1jkw_A 3 HNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGT 82 (323)
T ss_dssp --------CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHH
T ss_pred CCCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 3799999999986 677422 4667899999999999999999999999999 99999999
Q ss_pred HHHHHHHHhhcCccccCCceehhhhhhhhhccccCCCCCHHHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHcCC
Q psy4747 93 GVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKF 172 (414)
Q Consensus 93 Ai~~fdRF~~~~si~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~~~~~~~~~~~~~~~~~k~~Il~~E~~IL~~L~F 172 (414)
|++||||||+++++.++++++||+||||||||+||.++++++|+.++.. .+... ...+++|++||+.||++|+|
T Consensus 83 A~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~--~p~~~----~~~~~~Il~~E~~iL~~L~f 156 (323)
T 1jkw_A 83 ACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRE--SPLGQ----EKALEQILEYELLLIQQLNF 156 (323)
T ss_dssp HHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSS--CHHHH----HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcc--Chhhh----HHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999865321 00000 01378999999999999999
Q ss_pred cccccCHHHHHHHHHHHcC-----CChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccc
Q psy4747 173 DLQVDHPYSFLLKYAKSLK-----GDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGR 247 (414)
Q Consensus 173 dL~v~~P~~~L~~~l~~l~-----~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~ 247 (414)
+|.+++|++||.+|+..++ ... .+.+.+.||+++++++.++.|+.|+|++||+||||+|+..+|.+++.
T Consensus 157 ~l~v~~P~~~L~~~l~~l~~~~~~~~~--~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~---- 230 (323)
T 1jkw_A 157 HLIVHNPYRPFEGFLIDLKTRYPILEN--PEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMES---- 230 (323)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHCTTCCC--HHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTT----
T ss_pred cEEcCChHHHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHH----
Confidence 9999999999999998762 221 23688999999999999999999999999999999999999987654
Q ss_pred cccccchhhH-hh---cCCCHHHHHHHHHHHHHHHhhc
Q psy4747 248 NSKHLRWWEM-FV---EDMTMDLLEDICHQVLDLYSQS 281 (414)
Q Consensus 248 l~~~~~W~~~-~~---~~vt~~~l~~~~~~il~ly~~~ 281 (414)
|+.. |. .+++.++|.+++++|..+|...
T Consensus 231 ------w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~ 262 (323)
T 1jkw_A 231 ------YLSESLMLKENRTCLSQLLDIMKSMRNLVKKY 262 (323)
T ss_dssp ------HHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTC
T ss_pred ------HHHHHhccccccccHHHHHHHHHHHHHHHHcc
Confidence 5543 22 2568999999999999999875
No 7
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-37 Score=302.80 Aligned_cols=213 Identities=16% Similarity=0.158 Sum_probs=185.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhhhhhccccCC-CCCHH
Q psy4747 55 SFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEET-PKKCK 133 (414)
Q Consensus 55 S~~~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACLfLA~K~EE~-p~~l~ 133 (414)
+..++++.+.+..+|..+++||.+++.+|+|+++|+++|++|||||++++++.+.++++||+||||||||+||. +++++
T Consensus 57 ~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~ 136 (306)
T 3g33_B 57 SYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIE 136 (306)
T ss_dssp CCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTT
T ss_pred HHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHH
Confidence 34466788888899999999999999999999999999999999999999999999999999999999999998 77999
Q ss_pred HHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhc
Q psy4747 134 DVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLC 213 (414)
Q Consensus 134 ~lv~v~~~~~~~~~~~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~ 213 (414)
+++.++.+.++ +++|++||+.||++|+|+|.+++|++||.+|++.++...+....+.+.|++|+++++.
T Consensus 137 ~l~~~~~~~~~-----------~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~ 205 (306)
T 3g33_B 137 KLCIYTDHAVS-----------PRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCAT 205 (306)
T ss_dssp HHHHHTTTSSC-----------HHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCcc-----------HHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHh
Confidence 99988755443 7999999999999999999999999999999999987665555678899999999999
Q ss_pred CcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhh--cCCCHHHHHHHHHHHHHHHhhccccc
Q psy4747 214 TTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFV--EDMTMDLLEDICHQVLDLYSQSQQQA 285 (414)
Q Consensus 214 t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~--~~vt~~~l~~~~~~il~ly~~~~~~~ 285 (414)
++.++.|+||.||+|||++|+..++.. +.|. ..|++.+. .++++++|.+|++.|.++|.+.....
T Consensus 206 d~~~l~~~PS~IAaAai~lA~~~l~~~-~~w~------~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l~~~ 272 (306)
T 3g33_B 206 DYTFAMYPPSMIATGSIGAAVQGLGAC-SMSG------DELTELLAGITGTEVDCLRACQEQIEAALRESLREA 272 (306)
T ss_dssp CGGGTTSCHHHHHHHHHHHHHHTCC----CCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC----
T ss_pred hhhhccCCHHHHHHHHHHHHHHHhcCC-CCch------hhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998843 3332 35766553 39999999999999999999865544
No 8
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.6e-35 Score=284.84 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=188.6
Q ss_pred CcCHHHHhcCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhhhh
Q psy4747 44 YFDKKDIRNSPSFR--EGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFL 121 (414)
Q Consensus 44 ~ft~eeL~~~pS~~--~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACLfL 121 (414)
++.+.|.+..|+.. .+.+.+.+..+|..+++||.+++.+++|+++|+++|++|||||++++++.+.+++++|+|||||
T Consensus 24 ~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~i 103 (257)
T 1g3n_C 24 NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLV 103 (257)
T ss_dssp HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 56666666655421 2345566778999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCC-CCCHHHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCCChhHHHHH
Q psy4747 122 AGKVEET-PKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKM 200 (414)
Q Consensus 122 A~K~EE~-p~~l~~lv~v~~~~~~~~~~~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~~~~~~~~v 200 (414)
|||+||. ++++++++.++.+.++ +++|++||+.||++|+|++.+++|++||.+|++.++.+.+....+
T Consensus 104 A~K~eE~~~p~~~d~~~~~~~~~~-----------~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~ 172 (257)
T 1g3n_C 104 ASKLRSLTPISTSSLCYAAADSFS-----------RQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFW 172 (257)
T ss_dssp HHHHHCSSCCCHHHHHHHTTTCSC-----------HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHH
T ss_pred HHHHccccCCCHHHHHHHHCCCCC-----------HHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHH
Confidence 9999998 8999999988754333 799999999999999999999999999999999998776544567
Q ss_pred HHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhh--cCCCHHHHHHHHHHHHHHH
Q psy4747 201 LQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFV--EDMTMDLLEDICHQVLDLY 278 (414)
Q Consensus 201 ~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~--~~vt~~~l~~~~~~il~ly 278 (414)
.+.|++++++++.+..++.|+||.||+|||++|+..+|.+.+ .....|++.+. .++++++|.+|++.|.+++
T Consensus 173 ~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~------~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 173 HHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQD------THSGGVVPQLASILGCDVSVLQAAVEQILTSV 246 (257)
T ss_dssp HHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----------CHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcc------cchhhHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999998875321 01235776554 3899999999999999999
Q ss_pred hhc
Q psy4747 279 SQS 281 (414)
Q Consensus 279 ~~~ 281 (414)
+..
T Consensus 247 ~~~ 249 (257)
T 1g3n_C 247 SDF 249 (257)
T ss_dssp HHC
T ss_pred HHC
Confidence 864
No 9
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=2.8e-35 Score=285.09 Aligned_cols=221 Identities=19% Similarity=0.198 Sum_probs=188.4
Q ss_pred hhhcccccccCCcCHHHHhcCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCC
Q psy4747 33 CLIESVTMPYWYFDKKDIRNSP--SFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFP 110 (414)
Q Consensus 33 ~~~~s~~~~~W~ft~eeL~~~p--S~~~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~ 110 (414)
++.+|..++.-++...|.+..| +..++ + +.+.++|..+++||.+++.+++|+++|+++|++|||||+++.++.+.+
T Consensus 2 ~~~eY~~di~~~l~~~E~~~~~~~~y~~~-q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~ 79 (269)
T 2b9r_A 2 LSSEYVKDIYAYLRQLEAAQAVRPKYLLG-R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKM 79 (269)
T ss_dssp -----CCTTTTTHHHHHHTTCCCTTTTSS-S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGG
T ss_pred ChHHHHHHHHHHHHHHHHhhCCCcccccC-C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4557788887777777765543 33333 3 667789999999999999999999999999999999999999999999
Q ss_pred ceehhhhhhhhhccccCC-CCCHHHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHH
Q psy4747 111 RYVTASCCLFLAGKVEET-PKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKS 189 (414)
Q Consensus 111 l~lVa~ACLfLA~K~EE~-p~~l~~lv~v~~~~~~~~~~~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~ 189 (414)
++++|+||||||||+||. +++++|++.++.+.+ .+++|++||+.||++|+|++.+++|++||.+|++.
T Consensus 80 lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~-----------~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~ 148 (269)
T 2b9r_A 80 LQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTY-----------TKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKI 148 (269)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSS-----------CHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHhcccccCccHHHHHHHhcCCC-----------CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHh
Confidence 999999999999999999 889999998865433 28999999999999999999999999999999998
Q ss_pred cCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHh--hcCCCHHHH
Q psy4747 190 LKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMF--VEDMTMDLL 267 (414)
Q Consensus 190 l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~--~~~vt~~~l 267 (414)
++.+. ++...|++++++++.+..++.|+|+.||+|||++|+.++|.+ .|+..+ ..|+++++|
T Consensus 149 ~~~~~----~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~------------~w~~~l~~~tg~~~~~l 212 (269)
T 2b9r_A 149 GEVDV----EQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG------------EWTPTLQHYLSYTEESL 212 (269)
T ss_dssp SCCCH----HHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC------------CSCTTHHHHSCCCSSTT
T ss_pred cCCCH----HHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC------------CCCHHHHHHHCCCHHHH
Confidence 88765 688899999999999999999999999999999999998753 344432 248999999
Q ss_pred HHHHHHHHHHHhhcc
Q psy4747 268 EDICHQVLDLYSQSQ 282 (414)
Q Consensus 268 ~~~~~~il~ly~~~~ 282 (414)
.+|++.|.+++....
T Consensus 213 ~~~~~~l~~~~~~~~ 227 (269)
T 2b9r_A 213 LPVMQHLAKNVVMVN 227 (269)
T ss_dssp TTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987653
No 10
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=2.2e-35 Score=284.25 Aligned_cols=221 Identities=19% Similarity=0.251 Sum_probs=189.2
Q ss_pred cccccccCCcCHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceeh
Q psy4747 36 ESVTMPYWYFDKKDIRNSPSF-REGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVT 114 (414)
Q Consensus 36 ~s~~~~~W~ft~eeL~~~pS~-~~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lV 114 (414)
+|..++.-++.+.|.+..|+. ....+.+.+..+|..+++||.+++..++|+++|+++|++|||||+++.++.+.+++++
T Consensus 5 eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv 84 (260)
T 2cch_B 5 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLV 84 (260)
T ss_dssp TTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHH
Confidence 555566556666666655531 1122455677899999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccccCC-CCCHHHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCCC
Q psy4747 115 ASCCLFLAGKVEET-PKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGD 193 (414)
Q Consensus 115 a~ACLfLA~K~EE~-p~~l~~lv~v~~~~~~~~~~~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~~ 193 (414)
|+||||||||+||. +++++|++.++.+.+ .+++|++||+.||++|+|++.+++|++||.+|++.++.+
T Consensus 85 ~~acl~iA~K~ee~~~~~~~d~~~i~~~~~-----------~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~ 153 (260)
T 2cch_B 85 GTAAMLLASKFEEIYPPEVAEFVYITDDTY-----------TKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA 153 (260)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHTTSSS-----------CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHcCCc-----------CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCC
Confidence 99999999999999 899999998875433 289999999999999999999999999999999999865
Q ss_pred hhHHHHHHHHHHHHHHhhhcCcc-cCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhh--cCCCHHHHHHH
Q psy4747 194 KTKLEKMLQMAWTFVNDSLCTTL-CLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFV--EDMTMDLLEDI 270 (414)
Q Consensus 194 ~~~~~~v~~~A~~ll~dsl~t~l-~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~--~~vt~~~l~~~ 270 (414)
.. ++...|++++++++.+.. ++.|+|+.||+|||++|+..++. + .|++.+. .|+++++|.+|
T Consensus 154 ~~---~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~--~----------~w~~~l~~~~g~~~~~i~~~ 218 (260)
T 2cch_B 154 NC---KVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG--Q----------SWPESLIRKTGYTLESLKPC 218 (260)
T ss_dssp CH---HHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS--C----------CSCHHHHHHHCCCHHHHHHH
T ss_pred hH---HHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC--C----------cchHHHHHHhCcCHHHHHHH
Confidence 42 588999999999998887 99999999999999999998763 2 4665443 48999999999
Q ss_pred HHHHHHHHhhcc
Q psy4747 271 CHQVLDLYSQSQ 282 (414)
Q Consensus 271 ~~~il~ly~~~~ 282 (414)
++.|.++|....
T Consensus 219 ~~~l~~~~~~~~ 230 (260)
T 2cch_B 219 LMDLHQTYLKAP 230 (260)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHhcC
Confidence 999999998754
No 11
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=8.8e-35 Score=281.69 Aligned_cols=210 Identities=17% Similarity=0.231 Sum_probs=181.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhhhhhccccCC-CCCHHHHHH
Q psy4747 59 GIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEET-PKKCKDVIK 137 (414)
Q Consensus 59 gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACLfLA~K~EE~-p~~l~~lv~ 137 (414)
+.+.+....+|..+++||.+++.+++++.+|+++|++|||||+++.++.+.++++||+||||||||+||. |+++++++.
T Consensus 47 ~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~ 126 (271)
T 2w96_A 47 CVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCI 126 (271)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred hcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 4455567789999999999999999999999999999999999999999999999999999999999999 999999998
Q ss_pred HHhhhcccccccccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCccc
Q psy4747 138 TARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLC 217 (414)
Q Consensus 138 v~~~~~~~~~~~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~ 217 (414)
++.+.++ +++|++||+.||++|+|++.+++|++||.+|++.++.+.+....+.+.|++++++++.+..+
T Consensus 127 ~~~~~~~-----------~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~ 195 (271)
T 2w96_A 127 YTDNSIR-----------PEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKF 195 (271)
T ss_dssp HTTTSSC-----------HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred HhcCCCC-----------HHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhh
Confidence 7654332 89999999999999999999999999999999999887654445677899999999988899
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcc---cccccccccccchhhHhh--cCCCHHHHHHHHHHHHHHHhhccccc
Q psy4747 218 LQWEPEIIAVALMYLAGKLSKFEV---VDWIGRNSKHLRWWEMFV--EDMTMDLLEDICHQVLDLYSQSQQQA 285 (414)
Q Consensus 218 l~y~Ps~IAaA~I~lA~~~~~~~~---p~~~~~l~~~~~W~~~~~--~~vt~~~l~~~~~~il~ly~~~~~~~ 285 (414)
+.|+||.||+|||++|+..++.+. +.|. ..|.+.+. .++++++|.+|+++|.++|+.+...+
T Consensus 196 ~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~------~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~~~~~ 262 (271)
T 2w96_A 196 ISNPPSMVAAGSVVAAVQGLNLRSPNNFLSY------YRLTRFLSRVIKCDPDCLRACQEQIEALLESSLRQA 262 (271)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHSTTSCGGG------TTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTTTTSS
T ss_pred hccCHHHHHHHHHHHHHHHhCcCCCCCCCcH------HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999886422 2222 12333343 39999999999999999999765433
No 12
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=6.1e-34 Score=273.30 Aligned_cols=219 Identities=14% Similarity=0.141 Sum_probs=180.7
Q ss_pred cCHHHHhcCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhhhhh
Q psy4747 45 FDKKDIRNSPS--FREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLA 122 (414)
Q Consensus 45 ft~eeL~~~pS--~~~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACLfLA 122 (414)
+...|....|+ ..++.+.+.+..+|..+++||.+++.+++|+.+|+++|++|+|||++++++.+.+++++|+||||||
T Consensus 26 l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA 105 (254)
T 2f2c_A 26 NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIG 105 (254)
T ss_dssp HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHH
Confidence 33344444443 2234566777889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC-CCCHHHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCCChhHHHHHH
Q psy4747 123 GKVEET-PKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKML 201 (414)
Q Consensus 123 ~K~EE~-p~~l~~lv~v~~~~~~~~~~~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~~~~~~~~v~ 201 (414)
||+||. ++++++++.++.+.++ +++|++||+.||++|+|++.+++|++||.+|++.++.+.+....+.
T Consensus 106 ~K~eE~~~p~~~d~~~~~~~~~~-----------~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~ 174 (254)
T 2f2c_A 106 SKIRTVKPMTVSKLTYLSCDCFT-----------NLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLY 174 (254)
T ss_dssp HHHHCSSCCCHHHHSTTC---CC-----------HHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHH
T ss_pred HHhcccCCCCHHHHHHHhCCCCC-----------HHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHH
Confidence 999997 8899999876544332 7999999999999999999999999999999999988765555677
Q ss_pred HHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhh--cCCCHHHHHHHHHHHHHHHh
Q psy4747 202 QMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFV--EDMTMDLLEDICHQVLDLYS 279 (414)
Q Consensus 202 ~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~--~~vt~~~l~~~~~~il~ly~ 279 (414)
+.|++++++++.+..++.|+||.||+|||++|....+...-.|. .|.+.+. .++++++|.+|++.|.+++.
T Consensus 175 ~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~-------~~~~~l~~~tg~~~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 175 EAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWT-------CYLEDLSSILNFSTNTVRTVKDQVSEAFS 247 (254)
T ss_dssp HHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTH-------HHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChH-------HHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999997522100010 1122222 38999999999999999987
Q ss_pred hc
Q psy4747 280 QS 281 (414)
Q Consensus 280 ~~ 281 (414)
.-
T Consensus 248 ~~ 249 (254)
T 2f2c_A 248 LY 249 (254)
T ss_dssp TC
T ss_pred hC
Confidence 54
No 13
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.5e-32 Score=261.05 Aligned_cols=210 Identities=15% Similarity=0.158 Sum_probs=176.1
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhhhhhccccC
Q psy4747 48 KDIRNSPSFREGIDYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEE 127 (414)
Q Consensus 48 eeL~~~pS~~~gis~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACLfLA~K~EE 127 (414)
.|.+..| .+.+.+....+|..+++||.+++..++|.++|+++|++|+|||++++.+.+.++++||+||||||+|+||
T Consensus 31 ~E~~~~p---~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE 107 (252)
T 1f5q_B 31 HDARMVG---VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRA 107 (252)
T ss_dssp HHHHHSS---SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCc---CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 3334445 4556777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCHHHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q psy4747 128 T-PKKCKDVIKTARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWT 206 (414)
Q Consensus 128 ~-p~~l~~lv~v~~~~~~~~~~~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~~~~~~~~v~~~A~~ 206 (414)
. +.++++++.++.+.++ +++|++||+.||++|+|++.+++|++||.+|++.++.+.+....+...|++
T Consensus 108 ~~p~~~~~l~~~~~~~yt-----------~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~ 176 (252)
T 1f5q_B 108 YMPIKATQLAYLCGGATT-----------ADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRP 176 (252)
T ss_dssp SSCCCHHHHHHHHCTTCC-----------HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCCCC-----------HHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 8 8899999988765443 799999999999999999999999999999999998776555567889999
Q ss_pred HHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhh--cCCCHHHHHHHHHHHHHHHhhc
Q psy4747 207 FVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFV--EDMTMDLLEDICHQVLDLYSQS 281 (414)
Q Consensus 207 ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~--~~vt~~~l~~~~~~il~ly~~~ 281 (414)
+++.++.++.++.|+||.||+||+.++. +...+ | ...|.+.+. .+++.++|.+|++.|.+++..-
T Consensus 177 ~l~~~l~d~~~l~~~PS~iAaaa~~~~l---~~~~~-~------~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~ 243 (252)
T 1f5q_B 177 KIFCALCDGRSAMKRPVLITLACMHLTM---NQKYD-Y------YENRIDGVCKSLYITKEELHQCCDLVDIAIVSF 243 (252)
T ss_dssp HHHHHHHCHHHHTSCHHHHHHHHHHHHH---TTTCH-H------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhchhhhccCHHHHHHHHHHHHh---ccCCC-c------hhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999954443 22111 1 012222222 3899999999999999887553
No 14
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.97 E-value=5.5e-31 Score=245.04 Aligned_cols=187 Identities=16% Similarity=0.216 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhhhhhccccCCCCCHHHHHHHHhhhccccc
Q psy4747 68 YRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKK 147 (414)
Q Consensus 68 ~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~~~~~~~~~ 147 (414)
.+..+.++|.++|.+|+|++.|+++|++||+||+.++++++.+++.|++||||+|||+||.|++++||+.+++ .
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~--~---- 77 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR--I---- 77 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS--S----
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC--C----
Confidence 3567889999999999999999999999999999999999999999999999999999999999999998764 1
Q ss_pred ccccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHH
Q psy4747 148 FKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAV 227 (414)
Q Consensus 148 ~~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAa 227 (414)
.+++|.++|+.||+.|+|++.+.+|+.||.+|++.++.+. ++.+.|+.++++++.++++++|+|+.||+
T Consensus 78 -------~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~----~~~~~A~~i~~~~~~~~l~~g~~P~~IAa 146 (207)
T 1c9b_A 78 -------SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK----QVQMAATHIARKAVELDLVPGRSPISVAA 146 (207)
T ss_dssp -------CHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHTTCSTTCCHHHHHH
T ss_pred -------CHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHcCccCCCChHHHHH
Confidence 2689999999999999999999999999999999999876 68899999999999999999999999999
Q ss_pred HHHHHHHHhcCCcccccccccccccchhhHhhcCCCHHHHHHHHHHHHHHHhhc
Q psy4747 228 ALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYSQS 281 (414)
Q Consensus 228 A~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~~vt~~~l~~~~~~il~ly~~~ 281 (414)
||||+|++++|.+.+. ..|++.. ++++.+|.++.++|.+.....
T Consensus 147 AaiylA~~~~~~~~~~--------~~i~~~~--~v~~~tI~~~~~~l~~~l~~~ 190 (207)
T 1c9b_A 147 AAIYMASQASAEKRTQ--------KEIGDIA--GVADVTIRQSYRLIYPRAPDL 190 (207)
T ss_dssp HHHHHHHHTSSSCCCH--------HHHHHHH--TCCHHHHHHHHHHHGGGHHHH
T ss_pred HHHHHHHHHHCCCCCH--------HHHHHHh--CCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999865421 3677777 999999999999998765543
No 15
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=6.3e-31 Score=256.34 Aligned_cols=195 Identities=14% Similarity=0.171 Sum_probs=166.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-CccccCCceehhhhhhhhhccccCC-CCCHHHHHHH
Q psy4747 61 DYETEQRYRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMY-HSFKTFPRYVTASCCLFLAGKVEET-PKKCKDVIKT 138 (414)
Q Consensus 61 s~e~E~~~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~-~si~~~~l~lVa~ACLfLA~K~EE~-p~~l~~lv~v 138 (414)
+.+....+|..+++||.+++.++++..+|+++|++|||||+++ .++.+.+++++|+||||||||+||. ++++++++.+
T Consensus 42 q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i 121 (283)
T 1w98_B 42 HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYV 121 (283)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 3455667999999999999999999999999999999999998 6899999999999999999999998 8899999987
Q ss_pred HhhhcccccccccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHcCCChhH-------HHHHHHHHHHHHHhh
Q psy4747 139 ARMLVDDKKFKTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAKSLKGDKTK-------LEKMLQMAWTFVNDS 211 (414)
Q Consensus 139 ~~~~~~~~~~~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~~l~~~~~~-------~~~v~~~A~~ll~ds 211 (414)
+.+.+ .+++|++||+.||++|+|++.+++|++||.+|++.++.+... .......+.++++.+
T Consensus 122 ~~~~~-----------~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llels 190 (283)
T 1w98_B 122 TDGAC-----------SGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLC 190 (283)
T ss_dssp TTTSS-----------CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHH
T ss_pred HcCCC-----------CHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHH
Confidence 64432 289999999999999999999999999999999987654321 012334577899999
Q ss_pred hcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhcCCCHHHHHHHHHHHHHHHhhccc
Q psy4747 212 LCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYSQSQQ 283 (414)
Q Consensus 212 l~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~~vt~~~l~~~~~~il~ly~~~~~ 283 (414)
+.+..++.|+||.||+|||++|+. . ..|.... |+++++|.+|++.|..++...+.
T Consensus 191 l~d~~~l~~~PS~iAaAai~la~~---------~------~~l~~~t--g~~~~~i~~c~~~l~~~~~~~~~ 245 (283)
T 1w98_B 191 VLDVDCLEFPYGILAASALYHFSS---------S------ELMQKVS--GYQWCDIENCVKWMVPFAMVIRE 245 (283)
T ss_dssp HHSGGGGGSCHHHHHHHHHHHTSC---------H------HHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhcCCHHHHHHHHHHHHHC---------h------HHHHHHh--CCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999852 1 1344443 89999999999999999887643
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.95 E-value=1.7e-26 Score=213.45 Aligned_cols=185 Identities=12% Similarity=0.137 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhhhhhccccCCCCCHHHHHHHHhhhccccc
Q psy4747 68 YRREGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKK 147 (414)
Q Consensus 68 ~R~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~~~~~~~~~ 147 (414)
....+.++|.++|.+|+|++.+..+|..||+||+..+.+.+.+...+++||||+|||.||.|++++||..++.
T Consensus 8 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~------- 80 (200)
T 1ais_B 8 NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR------- 80 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHC-------
Confidence 3468899999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred ccccCCCcHHHHHHHHHHHHHHcCCcccc--cCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHH
Q psy4747 148 FKTFGDDPREEVMTLERILLQTIKFDLQV--DHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEII 225 (414)
Q Consensus 148 ~~~~~~~~k~~Il~~E~~IL~~L~FdL~v--~~P~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~I 225 (414)
-.+++|.++|+.|++.|||++.. .+|+.||.+|++.++.+. ++.+.||.+++++..+.++.+++|+.|
T Consensus 81 ------v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~----~v~~~A~~i~~~~~~~~~~~gr~P~~i 150 (200)
T 1ais_B 81 ------VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE----KVRRRAIEILDEAYKRGLTSGKSPAGL 150 (200)
T ss_dssp ------SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH----HHHHHHHHHHHHHHHTTCCTTSCHHHH
T ss_pred ------CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHcCcccCCCHHHH
Confidence 13689999999999999999999 999999999999999876 689999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccccccccccccchhhHhhcCCCHHHHHHHHHHHHHHHh
Q psy4747 226 AVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYS 279 (414)
Q Consensus 226 AaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~~vt~~~l~~~~~~il~ly~ 279 (414)
|+||||+|++++|.... . +++.+.. ++++.+|.++.++|.+...
T Consensus 151 AaAaly~A~~~~~~~~t--~------~ei~~~~--~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 151 VAAALYIASLLEGEKRT--Q------REVAEVA--RVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHHHHTTCCCC--H------HHHHHHH--TCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCC--H------HHHHHHh--CCCHHHHHHHHHHHHHHcC
Confidence 99999999999986532 1 2344444 8999999999999988665
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1e-24 Score=218.05 Aligned_cols=183 Identities=9% Similarity=0.029 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhhhhhccccCCCCCHHHHHHHHhhhccccccc
Q psy4747 70 REGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFK 149 (414)
Q Consensus 70 ~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~~~~~~~~~~~ 149 (414)
..+...|.++|..|+|+..++.+|..||+||+..+.+++.+...|++||||+|||.|+.|++++||+.++.
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~--------- 197 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH--------- 197 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS---------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC---------
Confidence 46678999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ccCCCcHHHHHHHHHHHHHHcC------------CcccccCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCccc
Q psy4747 150 TFGDDPREEVMTLERILLQTIK------------FDLQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLC 217 (414)
Q Consensus 150 ~~~~~~k~~Il~~E~~IL~~L~------------FdL~v~~P~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~ 217 (414)
..+++|.++++.|++.|+ |++.+.+|+.||.+|++.|+.+. ++.+.||.+++++..+.++
T Consensus 198 ----v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~----~v~~~A~~i~~~~~~~~l~ 269 (345)
T 3k7a_M 198 ----VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM----QVTTSAEYTAKKCKEIKEI 269 (345)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCC--------------------------------------------------------
T ss_pred ----CCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhchh
Confidence 126899999999999999 99999999999999999999875 7999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhcCCCHHHHHHHHHHHHHHHh
Q psy4747 218 LQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYS 279 (414)
Q Consensus 218 l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~~vt~~~l~~~~~~il~ly~ 279 (414)
.+++|+.||+||||+|+.++|.+.+. ..|.+.. ++++.+|.+..++|.+.+.
T Consensus 270 ~Gr~P~~IAaAaIylAa~~~~~~~t~--------~eIa~~~--~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 270 AGKSPITIAVVSIYLNILLFQIPITA--------AKVGQTL--QVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp --------------------------------------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCCCH--------HHHHHHH--CCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875432 3566666 8999999999999988664
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.77 E-value=3.5e-19 Score=177.85 Aligned_cols=184 Identities=9% Similarity=0.023 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhhhhhccccCCCCCHHHHHHHHhhhccccccc
Q psy4747 70 REGARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFK 149 (414)
Q Consensus 70 ~~~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~~~~~~~~~~~ 149 (414)
..+...|.++|..|+|+..+..+|..||++++..+.+++.+...|++||||+|||.++.|++++||..++..
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v-------- 198 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV-------- 198 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCC--------
Confidence 456778999999999999999999999999999999999999999999999999999999999999998741
Q ss_pred ccCCCcHHHHHHHHHHHHHHcCCc------------ccccCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCccc
Q psy4747 150 TFGDDPREEVMTLERILLQTIKFD------------LQVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLC 217 (414)
Q Consensus 150 ~~~~~~k~~Il~~E~~IL~~L~Fd------------L~v~~P~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~ 217 (414)
.+++|.+..+.|++.|+.. +...+|..||.+|+..|+.+. ++.+.|+.+++.+....+.
T Consensus 199 -----~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~----~v~~~A~~i~~~~~~~~i~ 269 (345)
T 4bbr_M 199 -----KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM----QVTTSAEYTAKKCKEIKEI 269 (345)
T ss_dssp -----CTTHHHHHHHHHHHCC-----------------------------------------------------------
T ss_pred -----CHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH----HHHHHHHHHHHHHHhcccc
Confidence 2678999999999999974 777899999999999999876 6899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhcCCCHHHHHHHHHHHHHHHhh
Q psy4747 218 LQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQVLDLYSQ 280 (414)
Q Consensus 218 l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~~vt~~~l~~~~~~il~ly~~ 280 (414)
.+.+|..||+||||+|+.++|.+..+.. --+.. ++++..|....++|.+....
T Consensus 270 ~GR~P~~IAAAaIylAa~l~g~~~t~~e--------Ia~v~--~Vse~TIr~rykel~~~~~~ 322 (345)
T 4bbr_M 270 AGKSPITIAVVSIYLNILLFQIPITAAK--------VGQTL--QVTEGTIKSGYKILYEHRDK 322 (345)
T ss_dssp ---------------------------------------------------------------
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCCHHH--------HHHHH--CCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987654311 11122 78888998888888765443
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.94 E-value=2.2e-05 Score=71.53 Aligned_cols=90 Identities=12% Similarity=0.187 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhhhhhccccCCCCCHHHHHHHHhhhcccccccccC
Q psy4747 73 ARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFG 152 (414)
Q Consensus 73 v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~~~~~~~~~~~~~~ 152 (414)
.++|.+++..|+++.++...|..++++.....-+.++.+..|++||||+||+..+.++..++|..++..
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~v----------- 177 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARV----------- 177 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCC-----------
Confidence 378999999999999999999999999998888889999999999999999999999999999988642
Q ss_pred CCcHHHHHHHHHHHHHHcCCccc
Q psy4747 153 DDPREEVMTLERILLQTIKFDLQ 175 (414)
Q Consensus 153 ~~~k~~Il~~E~~IL~~L~FdL~ 175 (414)
...+|.+.-..|.+.||.++.
T Consensus 178 --s~~ti~~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 178 --TEVTVRNRYKELVEKLKIKVP 198 (200)
T ss_dssp --CHHHHHHHHHHHHHHHTCCCC
T ss_pred --CHHHHHHHHHHHHHHcCCCCC
Confidence 257889999999999997663
No 20
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.73 E-value=0.00014 Score=70.31 Aligned_cols=102 Identities=11% Similarity=0.028 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCc---cccCCceehhhhhhhhhccccCC-CCCHHHHHHHHhhhcccccc
Q psy4747 73 ARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHS---FKTFPRYVTASCCLFLAGKVEET-PKKCKDVIKTARMLVDDKKF 148 (414)
Q Consensus 73 v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~s---i~~~~l~lVa~ACLfLA~K~EE~-p~~l~~lv~v~~~~~~~~~~ 148 (414)
.+||.++.+.-+++..++-.|++|++|+..+.. +.....+-+.++||.+|+|+-|. ...-+...++.
T Consensus 78 ~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--------- 148 (293)
T 2pmi_B 78 FNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--------- 148 (293)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH---------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc---------
Confidence 458889999999999999999999999987542 34567888999999999998765 33444444442
Q ss_pred cccCCCcHHHHHHHHHHHHHHcCCcccccCHHHHHHHHHH
Q psy4747 149 KTFGDDPREEVMTLERILLQTIKFDLQVDHPYSFLLKYAK 188 (414)
Q Consensus 149 ~~~~~~~k~~Il~~E~~IL~~L~FdL~v~~P~~~L~~~l~ 188 (414)
....+++-.||+.+|..|+|+|.+.. ..|...+..
T Consensus 149 ----Gisl~ELN~LE~eFL~lLdf~L~V~~-ee~~~cy~E 183 (293)
T 2pmi_B 149 ----GVRCHELNILENDFLKRVNYRIIPRD-HNITLCSIE 183 (293)
T ss_dssp ----TSCHHHHHHHHHHHHHTTTTCCSCCT-THHHHHHHH
T ss_pred ----CcCHHHHHHHHHHHHHHcCCceeeCH-HHHHHHHHH
Confidence 12368999999999999999998764 344433333
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.40 E-value=0.00034 Score=64.01 Aligned_cols=86 Identities=8% Similarity=0.091 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhhhhhccccCCCCCHHHHHHHHhhhcccccccccC
Q psy4747 73 ARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKFKTFG 152 (414)
Q Consensus 73 v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~~~~~~~~~~~~~~ 152 (414)
.++|.+++..|+++.++..+|..++++-+...-+.++.+..||+||||+||+..+.++..+++..++..
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v----------- 171 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV----------- 171 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCC-----------
Confidence 578999999999999999999999999998777889999999999999999999999999998877532
Q ss_pred CCcHHHHHHHHHHHHHHcC
Q psy4747 153 DDPREEVMTLERILLQTIK 171 (414)
Q Consensus 153 ~~~k~~Il~~E~~IL~~L~ 171 (414)
...+|.+.-+.|++.++
T Consensus 172 --~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 172 --ADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp --CHHHHHHHHHHHGGGHH
T ss_pred --CHHHHHHHHHHHHHHHH
Confidence 24566666666666554
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.004 Score=61.61 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhhhhhccccCCCCCHHHHHHHH
Q psy4747 73 ARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTA 139 (414)
Q Consensus 73 v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~ 139 (414)
.++|.+++..|+|+.++..+|..|+++.....-..++.+..||+||||||++..+..+..+++..++
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~ 302 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTL 302 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4678899999999999999999999999887777889999999999999999988777777776654
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=94.89 E-value=0.0046 Score=61.28 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCccccCCceehhhhhhhhhccccCCCCCHHHHHHHHh
Q psy4747 73 ARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTAR 140 (414)
Q Consensus 73 v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~si~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~~ 140 (414)
.++|.++|..|+|+.++...|..++++.....-..+..+.-|++||||+||+..+..++.++|..++.
T Consensus 236 ~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~ 303 (345)
T 4bbr_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQ 303 (345)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHC
Confidence 46899999999999999999999999998877778889999999999999999988888888777653
No 24
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=93.42 E-value=1.2 Score=40.41 Aligned_cols=147 Identities=13% Similarity=0.061 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCc---cccCCceehhhhhhhhhccccCCCCCHHHHHHHHhhhcccccc
Q psy4747 72 GARFIIDCGTKMDLGYNTMATGVVFFHRFYMYHS---FKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARMLVDDKKF 148 (414)
Q Consensus 72 ~v~~I~~v~~~LkL~~~t~~tAi~~fdRF~~~~s---i~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~~~~~~~~~~ 148 (414)
+.+-|..+.++-+++..++.-|+.+-+.|...+. .+--..+.|++||+.||+---..|+.+.++.-+= ..+.+
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~lD-~sL~D--- 90 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCLD-SSLGD--- 90 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHC-TTCCC---
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHHh-hhhhH---
Confidence 4556789999999999999999999999986543 3334678999999999998888899998876542 22221
Q ss_pred cccCCCcHHHHHHHHHHHHHHcCCcc-----cccCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHH
Q psy4747 149 KTFGDDPREEVMTLERILLQTIKFDL-----QVDHPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPE 223 (414)
Q Consensus 149 ~~~~~~~k~~Il~~E~~IL~~L~FdL-----~v~~P~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps 223 (414)
|-.--..|++.++..= .-.-.-..|.+|+..++..-..+ .-.+..++...-+-...-.+.--
T Consensus 91 ----------velrr~Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s~Y---~p~C~rL~~ai~~ve~LA~~~~~ 157 (260)
T 3h4c_A 91 ----------VELRRADIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVSLY---LPHCKRLLTALGRVEALAGLTVA 157 (260)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH---HHHHHHHHHHHHTCGGGTTCCHH
T ss_pred ----------HHHHHHHHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchhhh---hhHHHHHHHHHHHHHHHhhhhHH
Confidence 1111123444444421 11112235666777777755322 22344444443333333344433
Q ss_pred HHHHHHHHHHHH
Q psy4747 224 IIAVALMYLAGK 235 (414)
Q Consensus 224 ~IAaA~I~lA~~ 235 (414)
.--.-++.+|+.
T Consensus 158 drii~AlLLArT 169 (260)
T 3h4c_A 158 DRVTTALLLART 169 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 333344566665
No 25
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=93.40 E-value=0.52 Score=43.46 Aligned_cols=92 Identities=12% Similarity=0.236 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCC-CCHHHHHHHHHHHHHHhcCCccccccccccc--ccchhh
Q psy4747 180 YSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQ-WEPEIIAVALMYLAGKLSKFEVVDWIGRNSK--HLRWWE 256 (414)
Q Consensus 180 ~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~-y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~--~~~W~~ 256 (414)
.++|..+...++... .+...|..++...+.....-. +.+..||+||||+|+++-+...+ ...... ..-|-+
T Consensus 32 ~~~i~~v~~~l~L~~----~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~--l~d~~~~~~~~~~~ 105 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQ----RVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVH--IRTICNEANDLWSL 105 (235)
T ss_dssp HHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCccc--HHHHHHHHHHHccc
Confidence 457888888888877 688888888888877777777 99999999999999999875332 100000 000000
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHh
Q psy4747 257 MFVEDMTMDLLEDICHQVLDLYS 279 (414)
Q Consensus 257 ~~~~~vt~~~l~~~~~~il~ly~ 279 (414)
.+ .++.++|.++-..|++...
T Consensus 106 ~~--~~~~~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 106 KV--KLSRSNISEIEFEIISVLD 126 (235)
T ss_dssp SS--CCCHHHHHHHHHHHHHHTT
T ss_pred hh--hccHHHHHHHHHHHHHHCC
Confidence 11 4688899888888877654
No 26
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=92.35 E-value=0.65 Score=43.80 Aligned_cols=88 Identities=9% Similarity=0.121 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhc
Q psy4747 181 SFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVE 260 (414)
Q Consensus 181 ~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~ 260 (414)
++|......++... +...+|..+++..+.....-......||+||+++|++..+...|... +.-.....
T Consensus 43 ~wl~~v~~~~~l~~----~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~-------d~~~~~~~ 111 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQ----ETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIG-------DFAFVTDN 111 (269)
T ss_dssp HHHHHHHHHTTCCH----HHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHH-------HHHHHTCS
T ss_pred HHHHHHHHHhCCCH----HHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHH-------HHHHHhcC
Confidence 46667777777765 67788888888877766677788999999999999999876444211 11111112
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q psy4747 261 DMTMDLLEDICHQVLDLYS 279 (414)
Q Consensus 261 ~vt~~~l~~~~~~il~ly~ 279 (414)
.++.++|.++-..|++..+
T Consensus 112 ~~~~~eI~~mE~~IL~~L~ 130 (269)
T 2b9r_A 112 TYTKHQIRQMEMKILRALN 130 (269)
T ss_dssp SSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 4788888888877777544
No 27
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=92.03 E-value=0.75 Score=43.82 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCccccccccccc-cc------
Q psy4747 180 YSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSK-HL------ 252 (414)
Q Consensus 180 ~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~-~~------ 252 (414)
.++|......++... .+...|..++...+....+-.+.+..||+|||++|+++-+...+........ ..
T Consensus 47 ~~~I~~v~~~l~L~~----~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~ 122 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQ----QVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF 122 (285)
T ss_dssp HHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccc
Confidence 356777777888877 6888898888888887888899999999999999999987654321000000 00
Q ss_pred --chhhHhhcCCCHHHHHHHHHHHHHHHh
Q psy4747 253 --RWWEMFVEDMTMDLLEDICHQVLDLYS 279 (414)
Q Consensus 253 --~W~~~~~~~vt~~~l~~~~~~il~ly~ 279 (414)
.+-+.+ .++.++|.++-..|++...
T Consensus 123 ~~~~~~~~--~~~~~~Il~~E~~iL~~L~ 149 (285)
T 3rgf_B 123 SYAFPKEF--PYRMNHILECEFYLLELMD 149 (285)
T ss_dssp TTTCCSCC--CCCHHHHHHHHHHHHHHTT
T ss_pred cccCchhh--HHHHHHHHHHHHHHHHHcC
Confidence 000001 2567888888777777544
No 28
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=90.91 E-value=0.78 Score=42.86 Aligned_cols=88 Identities=10% Similarity=0.126 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhc
Q psy4747 181 SFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVE 260 (414)
Q Consensus 181 ~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~ 260 (414)
++|......++... +...+|..++...+.....-......||+||+++|+++.....|... +.-.....
T Consensus 56 dwl~ev~~~~~l~~----etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~-------d~~~~~~~ 124 (257)
T 1g3n_C 56 TWMFSVCQEYNLEP----NVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTS-------SLCYAAAD 124 (257)
T ss_dssp HHHHHHHHHTTCCH----HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHH-------HHHHHTTT
T ss_pred HHHHHHHHHhCCCc----cHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHH-------HHHHHHCC
Confidence 45666666677665 57778888888777666666677889999999999998876444211 11111222
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q psy4747 261 DMTMDLLEDICHQVLDLYS 279 (414)
Q Consensus 261 ~vt~~~l~~~~~~il~ly~ 279 (414)
.++.++|.++-..|++..+
T Consensus 125 ~~~~~~i~~mE~~iL~~L~ 143 (257)
T 1g3n_C 125 SFSRQELIDQEKELLEKLA 143 (257)
T ss_dssp CSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCC
Confidence 5899999999888888655
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=90.89 E-value=0.62 Score=43.62 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhc
Q psy4747 181 SFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVE 260 (414)
Q Consensus 181 ~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~ 260 (414)
++|......++... +...+|..+++..+.....-......||+||+++|+++.+...|... +.-.....
T Consensus 44 dwl~~v~~~~~l~~----~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~-------d~~~i~~~ 112 (260)
T 2cch_B 44 DWLVEVGEEYKLQN----ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA-------EFVYITDD 112 (260)
T ss_dssp HHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHH-------HHHHHTTS
T ss_pred HHHHHHHHHhCCCH----HHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHH-------HHHHHHcC
Confidence 45555555666555 45566666666655444444556788999999999999886444311 11112222
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q psy4747 261 DMTMDLLEDICHQVLDLYS 279 (414)
Q Consensus 261 ~vt~~~l~~~~~~il~ly~ 279 (414)
.++.++|.++-..|++...
T Consensus 113 ~~~~~~i~~mE~~iL~~L~ 131 (260)
T 2cch_B 113 TYTKKQVLRMEHLVLKVLT 131 (260)
T ss_dssp SSCHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHcC
Confidence 4789999998888887654
No 30
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=90.79 E-value=0.92 Score=42.28 Aligned_cols=90 Identities=12% Similarity=0.148 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhh
Q psy4747 180 YSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFV 259 (414)
Q Consensus 180 ~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~ 259 (414)
.++|......++... +...+|..+++..+.....-......||+||+++|+++.....|... +.-....
T Consensus 56 vdwl~~v~~~~~l~~----etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~-------d~~~~~~ 124 (254)
T 2f2c_A 56 LTWMHLLCESFELDK----SVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVS-------KLTYLSC 124 (254)
T ss_dssp HHHHHHHHHHTTCCT----THHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHH-------HHSTTC-
T ss_pred HHHHHHHHHHHCCCc----hHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHH-------HHHHHhC
Confidence 346666677777766 57788888888887776777888999999999999999775444211 1111111
Q ss_pred cCCCHHHHHHHHHHHHHHHhh
Q psy4747 260 EDMTMDLLEDICHQVLDLYSQ 280 (414)
Q Consensus 260 ~~vt~~~l~~~~~~il~ly~~ 280 (414)
..++.++|.++-..|++..+-
T Consensus 125 ~~~~~~~i~~mE~~IL~~L~~ 145 (254)
T 2f2c_A 125 DCFTNLELINQEKDILEALKW 145 (254)
T ss_dssp --CCHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCCC
Confidence 257899999999888886653
No 31
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=90.74 E-value=1.3 Score=41.60 Aligned_cols=88 Identities=9% Similarity=0.155 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhc
Q psy4747 181 SFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVE 260 (414)
Q Consensus 181 ~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~ 260 (414)
++|......++... +...+|..+++..+.....-......||+||+++|+++.+...+... ..-.....
T Consensus 62 ~wl~~v~~~~~l~~----~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~-------~~~~~~~~ 130 (271)
T 2w96_A 62 TWMLEVCEEQKCEE----EVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAE-------KLCIYTDN 130 (271)
T ss_dssp HHHHHHHHHTTCCT----THHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHH-------HHHHHTTT
T ss_pred HHHHHHHHHHCCch----hHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHH-------HHHHHhcC
Confidence 45555666666655 46678888888777666667788999999999999999876332211 11111112
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q psy4747 261 DMTMDLLEDICHQVLDLYS 279 (414)
Q Consensus 261 ~vt~~~l~~~~~~il~ly~ 279 (414)
.++.++|.++-..|++...
T Consensus 131 ~~~~~eI~~mE~~IL~~L~ 149 (271)
T 2w96_A 131 SIRPEELLQMELLLVNKLK 149 (271)
T ss_dssp SSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCC
Confidence 5789999998888887655
No 32
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=90.40 E-value=0.95 Score=43.64 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhc
Q psy4747 181 SFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVE 260 (414)
Q Consensus 181 ~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~ 260 (414)
++|......++... ++..+|..++...+....+-......||++|+++|+++-....+... ..-.....
T Consensus 76 dwl~ev~~~~~l~~----~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~-------~l~~~~~~ 144 (306)
T 3g33_B 76 YWMLEVCEEQRCEE----EVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIE-------KLCIYTDH 144 (306)
T ss_dssp HHHHHHHHHTTCCT----THHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTT-------HHHHHTTT
T ss_pred HHHHHHHHHhCCcH----hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHH-------HHHHHhcc
Confidence 45666666677766 46667777777777666667788999999999999998765433211 22222222
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q psy4747 261 DMTMDLLEDICHQVLDLYSQ 280 (414)
Q Consensus 261 ~vt~~~l~~~~~~il~ly~~ 280 (414)
.++.++|.++-..|++...-
T Consensus 145 ~~~~~~i~~mE~~IL~~L~f 164 (306)
T 3g33_B 145 AVSPRQLRDWEVLVLGKLKW 164 (306)
T ss_dssp SSCHHHHHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHHHHHHHcCC
Confidence 57899999999888886554
No 33
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=90.01 E-value=1.1 Score=42.69 Aligned_cols=88 Identities=11% Similarity=0.162 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcC-cccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhh
Q psy4747 181 SFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCT-TLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFV 259 (414)
Q Consensus 181 ~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t-~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~ 259 (414)
++|......++... +...+|..+++..+.. ...-......||+||+++|+++.+...|... +.-....
T Consensus 55 ~wl~~v~~~~~l~~----~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~-------~~~~i~~ 123 (283)
T 1w98_B 55 DWLMEVCEVYKLHR----ETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLH-------QFAYVTD 123 (283)
T ss_dssp HHHHHHHHHTTCBH----HHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHH-------HHHHTTT
T ss_pred HHHHHHHHHhCCCc----cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHH-------HHHHHHc
Confidence 45555666666655 5677777777776654 3456778899999999999999876444311 1111122
Q ss_pred cCCCHHHHHHHHHHHHHHHh
Q psy4747 260 EDMTMDLLEDICHQVLDLYS 279 (414)
Q Consensus 260 ~~vt~~~l~~~~~~il~ly~ 279 (414)
..++.++|.++-..|++..+
T Consensus 124 ~~~~~~ei~~mE~~IL~~L~ 143 (283)
T 1w98_B 124 GACSGDEILTMELMIMKALK 143 (283)
T ss_dssp TSSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHcC
Confidence 25789999999888888655
No 34
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=89.02 E-value=1.1 Score=41.66 Aligned_cols=56 Identities=13% Similarity=0.243 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCC
Q psy4747 180 YSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKF 239 (414)
Q Consensus 180 ~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~ 239 (414)
.++|......++... .+...|..++...+....+-.+.+..||+||+++|+++-+.
T Consensus 35 ~~~i~~v~~~l~l~~----~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~ 90 (257)
T 2ivx_A 35 ANLIQEMGQRLNVSQ----LTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ 90 (257)
T ss_dssp HHHHHHHHHHTTCCH----HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCcH----HHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC
Confidence 467888888888877 68889999999888878888999999999999999999876
No 35
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=88.42 E-value=1.4 Score=40.89 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=48.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCC
Q psy4747 180 YSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKF 239 (414)
Q Consensus 180 ~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~ 239 (414)
.++|......++... .+...|..++...+....+-.+.+..||+||+++|+++.+.
T Consensus 45 ~~~i~~v~~~l~l~~----~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~ 100 (258)
T 2i53_A 45 ARFIFDVGTRLGLHY----DTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEET 100 (258)
T ss_dssp HHHHHHHHHHTTCCH----HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCh----HHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccc
Confidence 457888888888876 68889999999888777788899999999999999999875
No 36
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=88.39 E-value=1.2 Score=43.16 Aligned_cols=56 Identities=20% Similarity=0.395 Sum_probs=47.7
Q ss_pred HHHHHHHHHcC--CChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCc
Q psy4747 181 SFLLKYAKSLK--GDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFE 240 (414)
Q Consensus 181 ~~L~~~l~~l~--~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~ 240 (414)
.+|..+...++ ... .+...|..++...+....+..+.+..||+||||+|+++-+..
T Consensus 62 ~~I~ev~~~l~~~Lp~----~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~ 119 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPR----SVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFN 119 (323)
T ss_dssp HHHHHHHHHCTTTCCH----HHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCH----HHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCC
Confidence 35677777787 666 688899999999888888889999999999999999998764
No 37
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=87.02 E-value=1.2 Score=43.94 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCC
Q psy4747 179 PYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKF 239 (414)
Q Consensus 179 P~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~ 239 (414)
-.++|..+...++... .+..+|..++...+....+-.+.+..||+||||+|+++.+.
T Consensus 41 ~v~wI~ev~~~l~L~~----~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~ 97 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQ----LTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ 97 (358)
T ss_dssp HHHHHHHHHTTTTCCH----HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC
Confidence 3456777777777776 68889999999888878888999999999999999998876
No 38
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=86.51 E-value=2.5 Score=39.48 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhcCcccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhc
Q psy4747 181 SFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLCTTLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVE 260 (414)
Q Consensus 181 ~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~ 260 (414)
++|......++... +...+|..+++..+.....-......||++|+++|+++-....|... ..-.....
T Consensus 54 dWl~ev~~~~~l~~----eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~-------~l~~~~~~ 122 (252)
T 1f5q_B 54 TWMFCVCKDLRQDN----NVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKAT-------QLAYLCGG 122 (252)
T ss_dssp HHHHHHHHHTTCCT----THHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHH-------HHHHHHCT
T ss_pred HHHHHHHHHcCCCh----HHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHH-------HHHHHhCC
Confidence 34555555566555 45666666666665544455566788999999999998876443211 11111223
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q psy4747 261 DMTMDLLEDICHQVLDLYS 279 (414)
Q Consensus 261 ~vt~~~l~~~~~~il~ly~ 279 (414)
.++.++|.++-..|++..+
T Consensus 123 ~yt~~~i~~mE~~IL~~L~ 141 (252)
T 1f5q_B 123 ATTADKLLTLEVKSLDTLS 141 (252)
T ss_dssp TCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCC
Confidence 6899999999888888654
No 39
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=74.43 E-value=5.9 Score=39.79 Aligned_cols=69 Identities=9% Similarity=-0.012 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHhhc--CccccCCceehhhhhhhhhccccCCCCCHHHHHHHHh
Q psy4747 72 GARFIIDCGTKMDLGY-NTMATGVVFFHRFYMY--HSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTAR 140 (414)
Q Consensus 72 ~v~~I~~v~~~LkL~~-~t~~tAi~~fdRF~~~--~si~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~~ 140 (414)
+..=|.++|.+|++.. +....-..+|+..+.. .-+++.++.-+.++|+|.-||+.....+.++|+..++
T Consensus 282 Aa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr 353 (411)
T 4ell_A 282 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 353 (411)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 3455889999998764 4545555666666644 3467788888999999999999998999999998754
No 40
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=73.20 E-value=4 Score=32.59 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=44.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhcCc-----cccCCceehhhhhhhhhccccCCCCCHHHHHH
Q psy4747 76 IIDCGTKMDLGYNTMATGVVFFHRFYMYHS-----FKTFPRYVTASCCLFLAGKVEETPKKCKDVIK 137 (414)
Q Consensus 76 I~~v~~~LkL~~~t~~tAi~~fdRF~~~~s-----i~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~ 137 (414)
|.++|..|++.. +...|-.++++|=..-. -.+.+.-..+++|+|.|||.-.....=..++.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~ 71 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVA 71 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHH
Confidence 678999999987 77788899999974422 11344556789999999999877544444443
No 41
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=72.43 E-value=6.7 Score=38.54 Aligned_cols=69 Identities=9% Similarity=-0.029 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHhhc--CccccCCceehhhhhhhhhccccCCCCCHHHHHHHHhh
Q psy4747 73 ARFIIDCGTKMDLGY-NTMATGVVFFHRFYMY--HSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARM 141 (414)
Q Consensus 73 v~~I~~v~~~LkL~~-~t~~tAi~~fdRF~~~--~si~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~~~ 141 (414)
..=|.++|.+|++.. +.......+|+..+.. .-+.+.++.-+.++|+|.-||+.....+.++|+..+..
T Consensus 219 ~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr~ 290 (347)
T 2r7g_A 219 YLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 290 (347)
T ss_dssp HHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 445889999998765 4556677777777754 34677888889999999999999988999999987543
No 42
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=65.27 E-value=9.2 Score=40.69 Aligned_cols=64 Identities=6% Similarity=0.014 Sum_probs=45.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhc-----CccccCCceehhhhhhhhhccccCCCCCHHHHHHHHh
Q psy4747 76 IIDCGTKMDLGYNTMATGVVFFHRFYMY-----HSFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTAR 140 (414)
Q Consensus 76 I~~v~~~LkL~~~t~~tAi~~fdRF~~~-----~si~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~~ 140 (414)
..++|+.|++...|..-|...|...... .++.+...+..++ .++.||++|+.-.++.++++.+.
T Consensus 8 f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC-~ly~~~~~~gn~vsLt~lLr~~~ 76 (656)
T 4elj_A 8 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC-IFIAAVDLDEMSFTFTELQKNIE 76 (656)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHH-HHHHHHHTTCCCSCHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhh-hheeeeeccCCeeeHHHHHHHhc
Confidence 4588999999999999999999998843 2334444444433 36666666777888888887763
No 43
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=62.99 E-value=7.6 Score=37.42 Aligned_cols=64 Identities=8% Similarity=0.043 Sum_probs=45.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhcCc---cccCCceehhhhhhhhhccccCC-CCCHHHHHHHH
Q psy4747 76 IIDCGTKMDLGYNTMATGVVFFHRFYMYHS---FKTFPRYVTASCCLFLAGKVEET-PKKCKDVIKTA 139 (414)
Q Consensus 76 I~~v~~~LkL~~~t~~tAi~~fdRF~~~~s---i~~~~l~lVa~ACLfLA~K~EE~-p~~l~~lv~v~ 139 (414)
..++|+.|++...|...|..+|++.-.... -...+-+..-.||||+||+..|. ..++.++++.+
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 457899999999999999999999776411 12223444566779999976655 67888888776
No 44
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=62.18 E-value=16 Score=38.80 Aligned_cols=70 Identities=9% Similarity=-0.031 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhhcC--ccccCCceehhhhhhhhhccccCCCCCHHHHHHHHhh
Q psy4747 72 GARFIIDCGTKMDLG-YNTMATGVVFFHRFYMYH--SFKTFPRYVTASCCLFLAGKVEETPKKCKDVIKTARM 141 (414)
Q Consensus 72 ~v~~I~~v~~~LkL~-~~t~~tAi~~fdRF~~~~--si~~~~l~lVa~ACLfLA~K~EE~p~~l~~lv~v~~~ 141 (414)
+..-|.++|.+|++. .........+|+..+..+ -+.+.++.-+.++|+|.-||+.....+.++|+..++.
T Consensus 527 Aa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr~ 599 (656)
T 4elj_A 527 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 599 (656)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHHh
Confidence 346688999999876 456667777788877543 4667788889999999999999989999999987543
No 45
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=59.56 E-value=44 Score=32.71 Aligned_cols=86 Identities=14% Similarity=0.232 Sum_probs=61.6
Q ss_pred CCcHHHHHHHHHHHHHHcCCcccccC---------------------------HHHHHHHHHHHcCCChhHHHHHHHHHH
Q psy4747 153 DDPREEVMTLERILLQTIKFDLQVDH---------------------------PYSFLLKYAKSLKGDKTKLEKMLQMAW 205 (414)
Q Consensus 153 ~~~k~~Il~~E~~IL~~L~FdL~v~~---------------------------P~~~L~~~l~~l~~~~~~~~~v~~~A~ 205 (414)
.+.++.+..+|..||+.|-|.-..+. ...-|..++..++.... ++.+.+|
T Consensus 165 relvkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~---~~~~~iW 241 (347)
T 2r7g_A 165 REMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHP---ELEHIIW 241 (347)
T ss_dssp HHHHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCT---THHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCch---HHHHHHH
Confidence 45688999999999999999765431 01112333344443321 4667888
Q ss_pred HHHHhhh--cCcccCCCCHHHHHHHHHHHHHHhcCCcc
Q psy4747 206 TFVNDSL--CTTLCLQWEPEIIAVALMYLAGKLSKFEV 241 (414)
Q Consensus 206 ~ll~dsl--~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~ 241 (414)
.+.+.++ .+.++....-.+|-++|||..+++.+.++
T Consensus 242 t~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~ 279 (347)
T 2r7g_A 242 TLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDL 279 (347)
T ss_dssp HHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCC
Confidence 8888777 46788889999999999999999988643
No 46
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=53.82 E-value=68 Score=30.58 Aligned_cols=89 Identities=8% Similarity=0.027 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhhhc--Ccc-cCCCCHHHHHHHHHHHHHHhcCCcccccccccccccch
Q psy4747 178 HPYSFLLKYAKSLKGDKTKLEKMLQMAWTFVNDSLC--TTL-CLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRW 254 (414)
Q Consensus 178 ~P~~~L~~~l~~l~~~~~~~~~v~~~A~~ll~dsl~--t~l-~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W 254 (414)
.-++||.++.+...... .+.-.|..+++.... ..+ .-.....-+-++|+.+|.++++-.. -.++.|
T Consensus 76 SI~~Yl~RI~k~t~ls~----~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~-------ysN~~w 144 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEH----CVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSF-------STNAHY 144 (293)
T ss_dssp CHHHHHHHHHHTTTCCH----HHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSC-------CCHHHH
T ss_pred cHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccc-------cChhHh
Confidence 56789999888877765 344445455554332 122 2356789999999999999886321 123466
Q ss_pred hhHhhcCCCHHHHHHHHHHHHHHHh
Q psy4747 255 WEMFVEDMTMDLLEDICHQVLDLYS 279 (414)
Q Consensus 255 ~~~~~~~vt~~~l~~~~~~il~ly~ 279 (414)
-+.- |++.++|..+-.++|.+.+
T Consensus 145 AkVg--Gisl~ELN~LE~eFL~lLd 167 (293)
T 2pmi_B 145 AKVG--GVRCHELNILENDFLKRVN 167 (293)
T ss_dssp HHHH--TSCHHHHHHHHHHHHHTTT
T ss_pred hhcc--CcCHHHHHHHHHHHHHHcC
Confidence 6653 8999999999999888644
No 47
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=48.43 E-value=99 Score=24.41 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhhcC-----cccCCCCHHHHHHHHHHHHHHhcCCcccccccccccccchhhHhhcCCCHHHHHHHHHHH
Q psy4747 200 MLQMAWTFVNDSLCT-----TLCLQWEPEIIAVALMYLAGKLSKFEVVDWIGRNSKHLRWWEMFVEDMTMDLLEDICHQV 274 (414)
Q Consensus 200 v~~~A~~ll~dsl~t-----~l~l~y~Ps~IAaA~I~lA~~~~~~~~p~~~~~l~~~~~W~~~~~~~vt~~~l~~~~~~i 274 (414)
+...|..+|+.--.. ...+.++=.+-++||+|.|++.+++.+.. .-.-.++ ++...+...++..+
T Consensus 18 ~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK---------~KL~~~s-~lk~~~f~~l~~~~ 87 (95)
T 3m03_A 18 AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDK---------NKMVATS-GVKKAIFDRLCKQL 87 (95)
T ss_dssp GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCH---------HHHHHTT-CBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCH---------HHHHHHH-CCCHHHHHHHHHHH
Confidence 445555555533211 12456666778899999999999886642 1111122 78888998888888
Q ss_pred HHHHh
Q psy4747 275 LDLYS 279 (414)
Q Consensus 275 l~ly~ 279 (414)
-++-.
T Consensus 88 e~~~~ 92 (95)
T 3m03_A 88 EKIGQ 92 (95)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 76654
No 48
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=25.39 E-value=1.9e+02 Score=28.88 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhh--cCcccCCCCHHHHHHHHHHHHHHhcCCcc
Q psy4747 199 KMLQMAWTFVNDSL--CTTLCLQWEPEIIAVALMYLAGKLSKFEV 241 (414)
Q Consensus 199 ~v~~~A~~ll~dsl--~t~l~l~y~Ps~IAaA~I~lA~~~~~~~~ 241 (414)
++....|.+.+-++ .+.++....=.+|-++|||.-+++.+.++
T Consensus 299 ~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~ 343 (411)
T 4ell_A 299 ELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDL 343 (411)
T ss_dssp THHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCC
Confidence 46677888888776 46788888999999999999999987643
No 49
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=20.48 E-value=72 Score=19.24 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHcCCc
Q psy4747 157 EEVMTLERILLQTIKFD 173 (414)
Q Consensus 157 ~~Il~~E~~IL~~L~Fd 173 (414)
++|.++|..|-++|.||
T Consensus 13 qeikelennirkalsfd 29 (31)
T 2wh0_Q 13 QEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 68999999999999997
Done!