BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4748
(136 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|383855900|ref|XP_003703448.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Megachile rotundata]
Length = 125
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 76/128 (59%), Gaps = 30/128 (23%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FCS CG+ILPL KGDVKCY CK ++G + F +
Sbjct: 16 FCSDCGSILPLLGEKGDVKCYACKRTWGPE--------------------------AFGD 49
Query: 73 IKAEYTIHFN---TVEKEKQKDKTEI-ADGPIVERKCKRCNNDTMSYATLQLRSADEGQT 128
+ YTIHFN E KQKD E A+GP+VERKC +C ND MSYATLQLRSADEGQT
Sbjct: 50 MYMNYTIHFNKKDAYESSKQKDDDEDEAEGPVVERKCPQCQNDKMSYATLQLRSADEGQT 109
Query: 129 IFFTCTKC 136
+F+TCTKC
Sbjct: 110 VFYTCTKC 117
>gi|380030611|ref|XP_003698937.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Apis
florea]
Length = 123
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 73/127 (57%), Gaps = 29/127 (22%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FCS CG+ILPL KG+V CY CK +G + F +
Sbjct: 15 FCSDCGSILPLLGDKGNVTCYACKRVWGPE--------------------------AFGD 48
Query: 73 IKAEYTIHFNTVEK---EKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+ YTIHFN KQ D+ E A+GPIVERKC +C ND MSYATLQLRSADEGQT+
Sbjct: 49 MSMSYTIHFNKTNVYTLSKQNDEKEEAEGPIVERKCPQCQNDKMSYATLQLRSADEGQTV 108
Query: 130 FFTCTKC 136
F+TCTKC
Sbjct: 109 FYTCTKC 115
>gi|328778973|ref|XP_003249576.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like,
partial [Apis mellifera]
Length = 110
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 73/127 (57%), Gaps = 29/127 (22%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FCS CG+ILPL KG+V CY CK +G + F +
Sbjct: 2 FCSDCGSILPLLGDKGNVTCYACKRIWGPE--------------------------AFGD 35
Query: 73 IKAEYTIHFNTVEK---EKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+ YTIHFN KQ D+ E A+GPIVERKC +C ND MSYATLQLRSADEGQT+
Sbjct: 36 MSMSYTIHFNKTNVYALSKQNDEKEEAEGPIVERKCPQCQNDKMSYATLQLRSADEGQTV 95
Query: 130 FFTCTKC 136
F+TCTKC
Sbjct: 96 FYTCTKC 102
>gi|357617341|gb|EHJ70731.1| transcription-associated zinc ribbon protein [Danaus plexippus]
Length = 120
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 73/138 (52%), Gaps = 28/138 (20%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFK 60
M G F + FC+KCG+ILPL G VKCY CK SY PD
Sbjct: 1 MADTGPFTTSTAFCAKCGSILPLLQEFGSVKCYACKASYD----------PD-------- 42
Query: 61 GHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEI--ADGPIVERKCKRCNNDTMSYATL 118
+ IK YTIHFNTV + +GP+VERKC +C ND MSYATL
Sbjct: 43 --------SYSNIKFNYTIHFNTVSALSNDKILHMDNPEGPVVERKCPKCGNDRMSYATL 94
Query: 119 QLRSADEGQTIFFTCTKC 136
QLRSADEGQT+F+TC C
Sbjct: 95 QLRSADEGQTVFYTCISC 112
>gi|321470559|gb|EFX81535.1| hypothetical protein DAPPUDRAFT_303407 [Daphnia pulex]
Length = 122
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 78/140 (55%), Gaps = 30/140 (21%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFK 60
M + FN + +FC +CG ILP+ G V C VCK
Sbjct: 1 MAAITQFNCDPQFCPRCGAILPILGTAGGVMCIVCK------------------------ 36
Query: 61 GHFNLFLAVFEEIKAEYTIHFNT----VEKEKQKDKTEIADGPIVERKCKRCNNDTMSYA 116
F + + V EE++ +Y I FN +E+++ K DGP+VERKC +C N+TMSYA
Sbjct: 37 --FEIDIQVMEEVRVDYNIDFNKRSDYIEEQQLKSAQSKTDGPLVERKCSKCGNETMSYA 94
Query: 117 TLQLRSADEGQTIFFTCTKC 136
+LQLRSADEGQTIF+TCTKC
Sbjct: 95 SLQLRSADEGQTIFYTCTKC 114
>gi|312379327|gb|EFR25638.1| hypothetical protein AND_26701 [Anopheles darlingi]
Length = 114
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 79/141 (56%), Gaps = 33/141 (23%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFK 60
M++ G N + FC CG+ILPL DV C+ C++
Sbjct: 1 MSNSG--NTDPGFCPNCGSILPLLRMARDVTCFSCQS----------------------- 35
Query: 61 GHFNLFLAVFEEIKAEYTIHFNTVEKEK--QKDKTE---IADGPIVERKCKRCNNDTMSY 115
N + F ++ EYTIHFN+ E +K Q +KT ADGPIV R+C +C ND MSY
Sbjct: 36 ---NFDASAFGTMEVEYTIHFNSYENKKSDQAEKTAGEGAADGPIVNRQCPKCGNDQMSY 92
Query: 116 ATLQLRSADEGQTIFFTCTKC 136
ATLQLRSADEGQT+FFTCTKC
Sbjct: 93 ATLQLRSADEGQTVFFTCTKC 113
>gi|350407595|ref|XP_003488137.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Bombus
impatiens]
Length = 123
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 75/137 (54%), Gaps = 32/137 (23%)
Query: 5 GYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFN 64
G F FCS CG+ILPL KG+VKCY CK +G +
Sbjct: 6 GSFISTPGFCSDCGSILPLLGDKGNVKCYACKRVWGPE---------------------- 43
Query: 65 LFLAVFEEIKAEYTIHFNT-----VEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQ 119
F ++ YTI FN KEK D E A+GPIVERKC +C ND MSYATLQ
Sbjct: 44 ----AFGDMAMSYTIEFNKKNVYGSSKEKN-DVMEEAEGPIVERKCPQCQNDKMSYATLQ 98
Query: 120 LRSADEGQTIFFTCTKC 136
LRSADEGQT+F+TCTKC
Sbjct: 99 LRSADEGQTVFYTCTKC 115
>gi|340717534|ref|XP_003397236.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Bombus
terrestris]
Length = 123
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 75/137 (54%), Gaps = 32/137 (23%)
Query: 5 GYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFN 64
G F FCS CG+ILPL +G+VKCY CK +G +
Sbjct: 6 GSFISTPGFCSDCGSILPLLGDRGNVKCYACKRVWGPE---------------------- 43
Query: 65 LFLAVFEEIKAEYTIHFNT-----VEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQ 119
F ++ YTI FN KEK D E A+GPIVERKC +C ND MSYATLQ
Sbjct: 44 ----AFGDMAMSYTIEFNKKNVYGSSKEKN-DAMEEAEGPIVERKCPQCQNDKMSYATLQ 98
Query: 120 LRSADEGQTIFFTCTKC 136
LRSADEGQT+F+TCTKC
Sbjct: 99 LRSADEGQTVFYTCTKC 115
>gi|157126224|ref|XP_001660857.1| DNA-directed RNA polymerase I, 12kD-subunit, putative [Aedes
aegypti]
gi|108873328|gb|EAT37553.1| AAEL010468-PA [Aedes aegypti]
Length = 124
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 73/134 (54%), Gaps = 31/134 (23%)
Query: 8 NVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFL 67
+V FC+ CG+ILPL G V CY C Y
Sbjct: 9 SVTPGFCADCGSILPLMRMTGTVHCYNCHKVYNE-------------------------- 42
Query: 68 AVFEEIKAEYTIHFNTVEKEK---QKD--KTEIADGPIVERKCKRCNNDTMSYATLQLRS 122
F ++ YTIHFN+ E +K Q+D K + ADGPIV RKC +C ND MSYATLQLRS
Sbjct: 43 GAFGTMEVAYTIHFNSYENKKAGQQQDRQKADAADGPIVSRKCPKCGNDKMSYATLQLRS 102
Query: 123 ADEGQTIFFTCTKC 136
ADEGQT+FFTCTKC
Sbjct: 103 ADEGQTVFFTCTKC 116
>gi|157126222|ref|XP_001660856.1| DNA-directed RNA polymerase I, 12kD-subunit, putative [Aedes
aegypti]
gi|108873327|gb|EAT37552.1| AAEL010468-PB [Aedes aegypti]
Length = 121
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 73/134 (54%), Gaps = 31/134 (23%)
Query: 8 NVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFL 67
+V FC+ CG+ILPL G V CY C Y
Sbjct: 6 SVTPGFCADCGSILPLMRMTGTVHCYNCHKVYNE-------------------------- 39
Query: 68 AVFEEIKAEYTIHFNTVEKEK---QKD--KTEIADGPIVERKCKRCNNDTMSYATLQLRS 122
F ++ YTIHFN+ E +K Q+D K + ADGPIV RKC +C ND MSYATLQLRS
Sbjct: 40 GAFGTMEVAYTIHFNSYENKKAGQQQDRQKADAADGPIVSRKCPKCGNDKMSYATLQLRS 99
Query: 123 ADEGQTIFFTCTKC 136
ADEGQT+FFTCTKC
Sbjct: 100 ADEGQTVFFTCTKC 113
>gi|195112999|ref|XP_002001059.1| GI22183 [Drosophila mojavensis]
gi|193917653|gb|EDW16520.1| GI22183 [Drosophila mojavensis]
Length = 121
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 74/136 (54%), Gaps = 32/136 (23%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
FN FC CG+ILP KG+V CY CK + PD+ +
Sbjct: 4 FNNRPGFCPSCGSILPPLQVKGNVFCYNCKQEFS----------PDVYIGET-------- 45
Query: 67 LAVFEEIKAEYTIHFNTVEKEK------QKDKTEIADGPIVERKCKRCNNDTMSYATLQL 120
+EYTIHFN+ + K QK + ADGP+VERKC +C ND MSYATLQL
Sbjct: 46 --------SEYTIHFNSFDPRKISKKVTQKSEAAEADGPVVERKCPKCGNDKMSYATLQL 97
Query: 121 RSADEGQTIFFTCTKC 136
RSADEGQT+FFTC KC
Sbjct: 98 RSADEGQTVFFTCLKC 113
>gi|195391074|ref|XP_002054188.1| GJ24301 [Drosophila virilis]
gi|194152274|gb|EDW67708.1| GJ24301 [Drosophila virilis]
Length = 121
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 73/136 (53%), Gaps = 32/136 (23%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
FN FC CG+ILP KG+V CY CK + PD
Sbjct: 4 FNNRPGFCPSCGSILPPLQVKGNVFCYNCKQEFS----------PD-------------- 39
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDK------TEIADGPIVERKCKRCNNDTMSYATLQL 120
V+ +EYTIHFN+ + K K T ADGP+VERKC +C ND MSYATLQL
Sbjct: 40 --VYSGETSEYTIHFNSYDPSKLSKKGNRETDTAEADGPVVERKCPKCGNDKMSYATLQL 97
Query: 121 RSADEGQTIFFTCTKC 136
RSADEGQT+FFTC KC
Sbjct: 98 RSADEGQTVFFTCLKC 113
>gi|170048120|ref|XP_001851544.1| RpI12 [Culex quinquefasciatus]
gi|167870300|gb|EDS33683.1| RpI12 [Culex quinquefasciatus]
Length = 129
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 71/137 (51%), Gaps = 39/137 (28%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CG+ILPL G+V CY C SY AVF
Sbjct: 11 FCPDCGSILPLLRMSGNVTCYNCHNSYSE--------------------------AVFGT 44
Query: 73 IKAEYTIHFNTVEKEKQKDKTEI-------------ADGPIVERKCKRCNNDTMSYATLQ 119
++ EYT+HFN+ E +K + A+GPIV RKC +C ND MSYATLQ
Sbjct: 45 MEVEYTVHFNSYENKKSDRARQGKRRKAGGGGDDDEAEGPIVSRKCPKCGNDKMSYATLQ 104
Query: 120 LRSADEGQTIFFTCTKC 136
LRSADEGQT+FFTCTKC
Sbjct: 105 LRSADEGQTVFFTCTKC 121
>gi|112982786|ref|NP_001037548.1| transcription-associated zinc ribbon protein [Bombyx mori]
gi|89521458|gb|ABD76573.1| transcription-associated zinc ribbon protein [Bombyx mori]
Length = 120
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 77/138 (55%), Gaps = 28/138 (20%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFK 60
M++E + + FC++CG+ILPL G VKCY CK Y
Sbjct: 1 MSTESPLSTSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADN----------------- 43
Query: 61 GHFNLFLAVFEEIKAEYTIHFNTVEKEKQKD--KTEIADGPIVERKCKRCNNDTMSYATL 118
+ ++K +YTIHFNT+ ++ T+ +GP+VERKC +C D MSYATL
Sbjct: 44 ---------YSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRMSYATL 94
Query: 119 QLRSADEGQTIFFTCTKC 136
QLRSADEGQT+F+TC KC
Sbjct: 95 QLRSADEGQTVFYTCIKC 112
>gi|17738105|ref|NP_524439.1| RpI12 [Drosophila melanogaster]
gi|7300774|gb|AAF55918.1| RpI12 [Drosophila melanogaster]
gi|216587887|gb|ACJ73151.1| GM14478p [Drosophila melanogaster]
Length = 120
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 75/129 (58%), Gaps = 31/129 (24%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CG+ILP KG+V CY CK +E QP V+
Sbjct: 10 FCPSCGSILPELQVKGNVICYNCK-----KEFQP---------------------DVYSG 43
Query: 73 IKAEYTIHFNTVEKEK-----QKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQ 127
K+E+TIHFNT + K +++ ADGP+VERKC +CN+D MSYATLQLRSADEGQ
Sbjct: 44 EKSEFTIHFNTYDPSKVFNRTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQ 103
Query: 128 TIFFTCTKC 136
T+FFTC KC
Sbjct: 104 TVFFTCLKC 112
>gi|195453150|ref|XP_002073660.1| GK13021 [Drosophila willistoni]
gi|194169745|gb|EDW84646.1| GK13021 [Drosophila willistoni]
Length = 121
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 74/136 (54%), Gaps = 32/136 (23%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
FN FC CG+ILP KG+V CY CK L
Sbjct: 4 FNNCPGFCPSCGSILPPLQVKGNVICYNCKEE--------------------------LL 37
Query: 67 LAVFEEIKAEYTIHFNTVE------KEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQL 120
V+ K+E+TI FNT + + K++ ++ ADGP+VERKC +C ND MSYATLQL
Sbjct: 38 PEVYSGEKSEFTIQFNTYDPSKVFNRAKRESESSEADGPVVERKCPKCGNDKMSYATLQL 97
Query: 121 RSADEGQTIFFTCTKC 136
RSADEGQT+FFTC KC
Sbjct: 98 RSADEGQTVFFTCLKC 113
>gi|195330831|ref|XP_002032106.1| GM23695 [Drosophila sechellia]
gi|194121049|gb|EDW43092.1| GM23695 [Drosophila sechellia]
Length = 120
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 74/129 (57%), Gaps = 31/129 (24%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CG+ILP KG+V C CK QE QP V+
Sbjct: 10 FCPSCGSILPELQVKGNVICCNCK-----QEFQP---------------------DVYSG 43
Query: 73 IKAEYTIHFNTVEKEK-----QKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQ 127
K+E+TIHFNT + K +++ ADGP+VERKC +CN+D MSYATLQLRSADEGQ
Sbjct: 44 EKSEFTIHFNTYDPSKVFNRTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQ 103
Query: 128 TIFFTCTKC 136
T+FFTC KC
Sbjct: 104 TVFFTCLKC 112
>gi|195572682|ref|XP_002104324.1| GD18505 [Drosophila simulans]
gi|194200251|gb|EDX13827.1| GD18505 [Drosophila simulans]
Length = 120
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 74/129 (57%), Gaps = 31/129 (24%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CG+ILP KG+V C CK QE QP V+
Sbjct: 10 FCPSCGSILPELQVKGNVFCCNCK-----QEFQP---------------------DVYSG 43
Query: 73 IKAEYTIHFNTVEKEK-----QKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQ 127
K+E+TIHFNT + K +++ ADGP+VERKC +CN+D MSYATLQLRSADEGQ
Sbjct: 44 EKSEFTIHFNTYDPSKVFNRTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQ 103
Query: 128 TIFFTCTKC 136
T+FFTC KC
Sbjct: 104 TVFFTCLKC 112
>gi|195502361|ref|XP_002098190.1| GE24089 [Drosophila yakuba]
gi|194184291|gb|EDW97902.1| GE24089 [Drosophila yakuba]
Length = 120
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 74/129 (57%), Gaps = 31/129 (24%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CG+ILP KG+V C C+ QE QP V+
Sbjct: 10 FCPSCGSILPELQVKGNVICCNCR-----QEFQP---------------------DVYSG 43
Query: 73 IKAEYTIHFNTVEKEK-----QKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQ 127
K+E+TIHFNT + K +++ ADGP+VERKC +CN+D MSYATLQLRSADEGQ
Sbjct: 44 EKSEFTIHFNTYDPSKVFNRTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQ 103
Query: 128 TIFFTCTKC 136
T+FFTC KC
Sbjct: 104 TVFFTCLKC 112
>gi|194904228|ref|XP_001981026.1| GG22692 [Drosophila erecta]
gi|194916194|ref|XP_001982968.1| GG11044 [Drosophila erecta]
gi|190647834|gb|EDV45162.1| GG11044 [Drosophila erecta]
gi|190652729|gb|EDV49984.1| GG22692 [Drosophila erecta]
Length = 120
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 74/129 (57%), Gaps = 31/129 (24%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CG+ILP KG+V C C+ QE QP V+
Sbjct: 10 FCPSCGSILPELQVKGNVICCNCR-----QEFQP---------------------DVYSG 43
Query: 73 IKAEYTIHFNTVEKEK-----QKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQ 127
K+E+TIHFNT + K +++ ADGP+VERKC +CN+D MSYATLQLRSADEGQ
Sbjct: 44 EKSEFTIHFNTYDPSKVFSRTKRESEADADGPVVERKCPKCNHDKMSYATLQLRSADEGQ 103
Query: 128 TIFFTCTKC 136
T+FFTC KC
Sbjct: 104 TVFFTCLKC 112
>gi|156548360|ref|XP_001603724.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Nasonia vitripennis]
Length = 125
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 73/134 (54%), Gaps = 30/134 (22%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F FC CG+ILPL +G V CY CK +G +
Sbjct: 10 FTTTPGFCPDCGSILPLLGDRGGVTCYACKRVWGPE------------------------ 45
Query: 67 LAVFEEIKAEYTIHFNT----VEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRS 122
VF E+ YT++FN ++ D E ADGPIV+R+C +CNND MSYATLQLRS
Sbjct: 46 --VFGEMAMTYTVNFNNKDTYASAKQDDDDEEEADGPIVDRRCPQCNNDKMSYATLQLRS 103
Query: 123 ADEGQTIFFTCTKC 136
ADEGQT+F+TCTKC
Sbjct: 104 ADEGQTVFYTCTKC 117
>gi|158291066|ref|XP_312581.4| AGAP002375-PA [Anopheles gambiae str. PEST]
gi|157018196|gb|EAA07851.5| AGAP002375-PA [Anopheles gambiae str. PEST]
Length = 114
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 72/132 (54%), Gaps = 30/132 (22%)
Query: 9 VESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLA 68
++ FC CG+ILP V CY C++ + A
Sbjct: 1 MDPGFCPDCGSILPPLKNSNRVSCYGCQSEFDA--------------------------A 34
Query: 69 VFEEIKAEYTIHFNTVEKEK--QKDKTEI--ADGPIVERKCKRCNNDTMSYATLQLRSAD 124
F ++ EYTIHFN+ +K Q D+ E A+GPIV R+C +C ND MSYATLQLRSAD
Sbjct: 35 AFGTMETEYTIHFNSYANKKSDQADRAEGEEAEGPIVNRQCPKCGNDQMSYATLQLRSAD 94
Query: 125 EGQTIFFTCTKC 136
EGQT+FFTCTKC
Sbjct: 95 EGQTVFFTCTKC 106
>gi|307194438|gb|EFN76736.1| DNA-directed RNA polymerase I subunit RPA12 [Harpegnathos saltator]
Length = 124
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 73/134 (54%), Gaps = 30/134 (22%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + FC CG+ILPL KG V CY CK + ++
Sbjct: 9 FVTKPGFCPDCGSILPLLGDKGGVTCYACKKEWSSE------------------------ 44
Query: 67 LAVFEEIKAEYTIHFN---TVEKEKQKDKT-EIADGPIVERKCKRCNNDTMSYATLQLRS 122
VF ++ T+HFN T + K D + A+GP+VER+C +C ND MSYATLQLRS
Sbjct: 45 --VFGDMIMTLTLHFNSKHTYKSAKDADSNKDDAEGPVVERRCPQCQNDKMSYATLQLRS 102
Query: 123 ADEGQTIFFTCTKC 136
ADEGQT+F+TCTKC
Sbjct: 103 ADEGQTVFYTCTKC 116
>gi|194740930|ref|XP_001952942.1| GF17465 [Drosophila ananassae]
gi|190626001|gb|EDV41525.1| GF17465 [Drosophila ananassae]
Length = 121
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 75/136 (55%), Gaps = 32/136 (23%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
FN FC CG+ILP KG+V CY CK + PD
Sbjct: 4 FNNCPGFCPSCGSILPTLQVKGNVMCYNCKKEF----------LPD-------------- 39
Query: 67 LAVFEEIKAEYTIHFNTVE------KEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQL 120
V+ K ++ I FNT + + K++ ++ ADGP+VERKC +CN+D MSYATLQL
Sbjct: 40 --VYSGEKTDFIIQFNTYDPSKVFNRTKRESESSEADGPVVERKCPKCNHDKMSYATLQL 97
Query: 121 RSADEGQTIFFTCTKC 136
RSADEGQT+FFTC KC
Sbjct: 98 RSADEGQTVFFTCLKC 113
>gi|195055055|ref|XP_001994438.1| GH16255 [Drosophila grimshawi]
gi|193892201|gb|EDV91067.1| GH16255 [Drosophila grimshawi]
Length = 120
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 76/135 (56%), Gaps = 31/135 (22%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
FN + FC CG+ILP KG+V C+ CK + PD+ +
Sbjct: 4 FNNRAGFCPSCGSILPPLQVKGNVFCFNCKQEFS----------PDVYIGE--------- 44
Query: 67 LAVFEEIKAEYTIHFNT-----VEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLR 121
K+EYTI+FN+ + K+ ++ ADGP+VERKC +C ++ MSYATLQLR
Sbjct: 45 -------KSEYTINFNSYDPSELNKKVHRESETEADGPVVERKCPKCGHEKMSYATLQLR 97
Query: 122 SADEGQTIFFTCTKC 136
SADEGQT+FFTC KC
Sbjct: 98 SADEGQTVFFTCLKC 112
>gi|91093050|ref|XP_967369.1| PREDICTED: similar to RpI12 CG13418-PA [Tribolium castaneum]
gi|270002663|gb|EEZ99110.1| hypothetical protein TcasGA2_TC005003 [Tribolium castaneum]
Length = 125
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 74/143 (51%), Gaps = 33/143 (23%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFK 60
M++ F FC CG+ILP G VKCY C+ ++ +
Sbjct: 1 MSTGPNFESIEGFCPDCGSILPPLKQTGGVKCYACERNFPSD------------------ 42
Query: 61 GHFNLFLAVFEEIKAEYTIHFNT-------VEKEKQKDKTEIADGPIVERKCKRCNNDTM 113
VF KA Y IHFN+ + K+ K E DGP+V+RKC +C +D M
Sbjct: 43 --------VFRGTKASYVIHFNSRDYKTHSMNKQNNKKDEEEDDGPVVDRKCAKCGHDKM 94
Query: 114 SYATLQLRSADEGQTIFFTCTKC 136
+YAT+QLRSADEGQT+F+TCTKC
Sbjct: 95 TYATVQLRSADEGQTVFYTCTKC 117
>gi|125773775|ref|XP_001358146.1| GA12270 [Drosophila pseudoobscura pseudoobscura]
gi|195143603|ref|XP_002012787.1| GL23744 [Drosophila persimilis]
gi|54637881|gb|EAL27283.1| GA12270 [Drosophila pseudoobscura pseudoobscura]
gi|194101730|gb|EDW23773.1| GL23744 [Drosophila persimilis]
Length = 121
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 72/136 (52%), Gaps = 32/136 (23%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
FN FC CG+ILP KG+V C+ C H
Sbjct: 4 FNNCPGFCPSCGSILPPLQVKGNVICHNC--------------------------HQEFL 37
Query: 67 LAVFEEIKAEYTIHFNTVE------KEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQL 120
V+ K EY+I FNT + + K++ ++ ADGP+VERKC +C +D MSYATLQL
Sbjct: 38 PDVYGGEKTEYSIQFNTYDPSKVFNRTKRESESSEADGPVVERKCPKCGHDKMSYATLQL 97
Query: 121 RSADEGQTIFFTCTKC 136
RSADEGQT+FFTC KC
Sbjct: 98 RSADEGQTVFFTCLKC 113
>gi|332030035|gb|EGI69860.1| DNA-directed RNA polymerase I subunit RPA12 [Acromyrmex echinatior]
Length = 137
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 74/129 (57%), Gaps = 31/129 (24%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CG+ILPL KG V CY CK + + VF +
Sbjct: 15 FCPDCGSILPLLGEKGGVTCYTCKREWDAE--------------------------VFGD 48
Query: 73 IKAEYTIHFNTVE-----KEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQ 127
+K +TIHFNT + KE++ D + ADGP VER+C +C ND MSYATLQLRSADEGQ
Sbjct: 49 MKMTHTIHFNTKDTYVSVKEEEDDSEDDADGPTVERECPQCYNDKMSYATLQLRSADEGQ 108
Query: 128 TIFFTCTKC 136
T+FFTCTKC
Sbjct: 109 TVFFTCTKC 117
>gi|242005494|ref|XP_002423600.1| DNA-directed RNA polymerase I subunit, putative [Pediculus humanus
corporis]
gi|212506748|gb|EEB10862.1| DNA-directed RNA polymerase I subunit, putative [Pediculus humanus
corporis]
Length = 124
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 72/135 (53%), Gaps = 31/135 (22%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F E FC CG+ILP+ D VKC++CK YG +
Sbjct: 8 FEGEKGFCWNCGSILPMLDDSAVVKCFMCKFEYGPE------------------------ 43
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKD-----KTEIADGPIVERKCKRCNNDTMSYATLQLR 121
F +++ Y I F + K+ + K + +GP+VERKC +C ND MSYATLQLR
Sbjct: 44 --AFGAMESHYQIKFRSPYGYKETENFNQRKMQKNEGPVVERKCSKCGNDIMSYATLQLR 101
Query: 122 SADEGQTIFFTCTKC 136
SADEGQT+F+TCTKC
Sbjct: 102 SADEGQTVFYTCTKC 116
>gi|307166898|gb|EFN60802.1| DNA-directed RNA polymerase I subunit RPA12 [Camponotus floridanus]
Length = 117
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 72/135 (53%), Gaps = 31/135 (22%)
Query: 7 FNVESEFCSKCGTILPLFDFKGD-VKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNL 65
F S FC CG+ILPL D D V C+ CK + +
Sbjct: 1 FITASGFCPDCGSILPLLDESKDTVVCFACKREWNAE----------------------- 37
Query: 66 FLAVFEEIKAEYTIHFNT----VEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLR 121
F ++K +TIHFN+ + + D + ADGPIVER C +C ND MSYATLQLR
Sbjct: 38 ---TFGDMKMTHTIHFNSKNTYISAREADDSDDDADGPIVERACPQCKNDKMSYATLQLR 94
Query: 122 SADEGQTIFFTCTKC 136
SADEGQT+F+TCTKC
Sbjct: 95 SADEGQTVFYTCTKC 109
>gi|193652746|ref|XP_001942824.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Acyrthosiphon pisum]
gi|328705318|ref|XP_003242762.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Acyrthosiphon pisum]
Length = 121
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 71/124 (57%), Gaps = 21/124 (16%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+KCG+ILP + +KCY CKT +G P + G + +N+ L E+
Sbjct: 11 FCTKCGSILPSLSMEEFIKCYSCKTVFG-----PEIYGNAV-------AEYNIILNSVED 58
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
I N V+ E K+ + DGPI ER+C C ++ MSYA +QLRSADEGQT+F+T
Sbjct: 59 ID-------NVVKTENNKNDAD--DGPIAERRCGLCGHNQMSYAAVQLRSADEGQTVFYT 109
Query: 133 CTKC 136
C KC
Sbjct: 110 CLKC 113
>gi|196000120|ref|XP_002109928.1| hypothetical protein TRIADDRAFT_53335 [Trichoplax adhaerens]
gi|190588052|gb|EDV28094.1| hypothetical protein TRIADDRAFT_53335 [Trichoplax adhaerens]
Length = 120
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 29/133 (21%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F E+ FC +CG+I+P + C VC +
Sbjct: 5 FICETGFCPRCGSIMPSPSSAQTINCIVCNN--------------------------QIS 38
Query: 67 LAVFEEIKAEYTIHFNTVEK---EKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSA 123
+ + ++ + TI FN + +K KD T+ A GPI+ERKC++C N++M+Y T Q RSA
Sbjct: 39 IDSYLGVETKSTITFNAIRSKGVQKIKDDTQHAKGPIIERKCEKCGNNSMTYYTQQTRSA 98
Query: 124 DEGQTIFFTCTKC 136
DEGQT+F++CTKC
Sbjct: 99 DEGQTVFYSCTKC 111
>gi|290561092|gb|ADD37948.1| DNA-directed RNA polymerase I subunit RPA12 [Lepeophtheirus
salmonis]
Length = 120
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 65/134 (48%), Gaps = 23/134 (17%)
Query: 3 SEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGH 62
+ F+ + FCS CG+ILP KG + C C G++ L L +I + F
Sbjct: 2 ASATFSSDPSFCSDCGSILPNVPSKGHLCCSAC----GSKADISLFLDKEISYSIEFNKR 57
Query: 63 FNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRS 122
E++ T+ N ++ E P VER C C + MSYA LQLRS
Sbjct: 58 --------EDLAVARTVGVNDLQSE-----------PTVERTCSNCGHGLMSYAALQLRS 98
Query: 123 ADEGQTIFFTCTKC 136
ADEGQT+FFTC KC
Sbjct: 99 ADEGQTVFFTCLKC 112
>gi|322780803|gb|EFZ10032.1| hypothetical protein SINV_03004 [Solenopsis invicta]
Length = 72
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 50/67 (74%), Gaps = 7/67 (10%)
Query: 77 YTIHFNT-------VEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+TI FNT V ++ +D + A+GPIVER+C +C ND MSYATLQLRSADEGQT+
Sbjct: 5 HTIFFNTKHTYASSVSVKEGEDSEDDAEGPIVERQCPQCQNDKMSYATLQLRSADEGQTV 64
Query: 130 FFTCTKC 136
F+TCTKC
Sbjct: 65 FYTCTKC 71
>gi|391332671|ref|XP_003740755.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Metaseiulus occidentalis]
Length = 127
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 24/131 (18%)
Query: 6 YFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNL 65
YF+ E EFCS CG+ILPL D V C +C TS + ++ F G
Sbjct: 13 YFSGELEFCSVCGSILPLADATKFVVCRLCSTS---------------IPIENFHGMETK 57
Query: 66 FLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADE 125
+ V+ + + ++ QKD + GP V+R C +C + M+YATLQ RSADE
Sbjct: 58 SVVVYNDRET-------ALKGAVQKDDGVV--GPTVDRVCVKCGREGMTYATLQTRSADE 108
Query: 126 GQTIFFTCTKC 136
GQTIF++C C
Sbjct: 109 GQTIFYSCPDC 119
>gi|410928702|ref|XP_003977739.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Takifugu rubripes]
Length = 118
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 31/134 (23%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + FC +CG ILPL + V+C C F++
Sbjct: 4 FAADLNFCPECGNILPLPGLQDTVRCPRCS--------------------------FSIP 37
Query: 67 LAVFEEIKAEYTIHFNTVEKE----KQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRS 122
+A F + T+ N +E+ + KD +E+ GP+++R+C RCN + M Y T Q+RS
Sbjct: 38 VAEFNGQQIRSTVVLNPIERSAVILEDKDDSELK-GPVIDRRCLRCNKEGMVYHTRQMRS 96
Query: 123 ADEGQTIFFTCTKC 136
ADEGQT+FFTC C
Sbjct: 97 ADEGQTVFFTCIHC 110
>gi|318056068|ref|NP_001188185.1| DNA-directed RNA polymerase I subunit rpa12 [Ictalurus punctatus]
gi|308323879|gb|ADO29075.1| DNA-directed RNA polymerase I subunit rpa12 [Ictalurus punctatus]
Length = 133
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 68/132 (51%), Gaps = 28/132 (21%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + FC +CG ILP+ + + C C S QE F G+
Sbjct: 4 FKGDINFCPECGNILPIPELHDFITCPRCAFSIPVQE---------------FSGYM--- 45
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIAD--GPIVERKCKRCNNDTMSYATLQLRSAD 124
IK+ ++ FN++EK ++E ++ GPI++RKC RCN + M Y T Q+RSAD
Sbjct: 46 ------IKS--SVVFNSLEKSSSAVESEDSELKGPIIDRKCSRCNKEGMVYHTRQMRSAD 97
Query: 125 EGQTIFFTCTKC 136
EGQT+FFTC C
Sbjct: 98 EGQTVFFTCIHC 109
>gi|47210619|emb|CAF93250.1| unnamed protein product [Tetraodon nigroviridis]
Length = 147
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 28/132 (21%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + FC +CG ILP + V+C C F++
Sbjct: 16 FTSDLNFCPECGNILPPPGLQDTVRCPRCS--------------------------FSIP 49
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIAD--GPIVERKCKRCNNDTMSYATLQLRSAD 124
+A F+ + T+ N EK + E +D GP+++R+C RCN + M Y T Q+RSAD
Sbjct: 50 VAEFDGQQIRSTVVLNPAEKSAAVVEEEDSDLQGPVIDRRCVRCNKEGMVYHTRQMRSAD 109
Query: 125 EGQTIFFTCTKC 136
EGQT+FFTC C
Sbjct: 110 EGQTVFFTCVHC 121
>gi|405945747|gb|EKC17458.1| DNA-directed RNA polymerase I subunit RPA12 [Crassostrea gigas]
Length = 113
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 27/131 (20%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + EFC CGTILPL V C +C QE
Sbjct: 8 FVTDLEFCPTCGTILPLPGMDDYVTCKLCGYKIHVQE----------------------- 44
Query: 67 LAVFEEIKAEYTIHFNTVEK-EKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADE 125
F+ +K +I FN E + ++ E + GP+ +RKC +C ++ MSY T Q RSADE
Sbjct: 45 ---FDGVKITSSIVFNRPETLQTNAEEGETSSGPLADRKCSKCGHEKMSYTTRQTRSADE 101
Query: 126 GQTIFFTCTKC 136
GQT+FFTC C
Sbjct: 102 GQTVFFTCLNC 112
>gi|225709336|gb|ACO10514.1| DNA-directed RNA polymerase I subunit RPA12 [Caligus rogercresseyi]
Length = 120
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 64/139 (46%), Gaps = 30/139 (21%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFK 60
MTS F + FCS CG+ILP +G + C C G++ L +I
Sbjct: 1 MTSRA-FTSDPSFCSDCGSILPDVPSRGPLHCVAC----GSEADVSQFLDKEIT------ 49
Query: 61 GHFNLFLAVFEEIKAEYTIHFNTVEK---EKQKDKTEIADGPIVERKCKRCNNDTMSYAT 117
YTI FN E ++ ++ + P VER C C MSYA
Sbjct: 50 ----------------YTIEFNKREDLDVARRVNEDNSSSEPTVERTCPNCGYSKMSYAA 93
Query: 118 LQLRSADEGQTIFFTCTKC 136
LQLRSADEGQT+FFTC KC
Sbjct: 94 LQLRSADEGQTVFFTCLKC 112
>gi|443704238|gb|ELU01383.1| hypothetical protein CAPTEDRAFT_211837 [Capitella teleta]
Length = 115
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 27/126 (21%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC +C ILPL D + V C+ CK F + + F+
Sbjct: 8 EFCPECAAILPLPDKREFVTCFCCK--------------------------FTIPIKDFD 41
Query: 72 EIKAEYTIHFNTVEKEKQKDKTE-IADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
I+ + I FN + + +E A GP V+R+C +C ND M+YAT Q RSADEGQT+F
Sbjct: 42 GIEIKSKIIFNKRKTKNAGLSSEDQAAGPTVDRQCAKCGNDGMTYATRQTRSADEGQTVF 101
Query: 131 FTCTKC 136
++C KC
Sbjct: 102 YSCPKC 107
>gi|427786081|gb|JAA58492.1| Putative dna-directed rna polymerase i [Rhipicephalus pulchellus]
Length = 122
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 23/130 (17%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F +FC +CGT+LPL + V+C C + ++ F G
Sbjct: 8 FLSAPDFCKRCGTVLPLPGHEDYVECKKCGAR---------------IDVRNFHGLETFS 52
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF + KA K+ GP+V+RKC RC ++ M+YATLQ RSADEG
Sbjct: 53 RVVFNDRKAAL--------KKAAPVSAAKPAGPLVDRKCSRCGHEGMTYATLQTRSADEG 104
Query: 127 QTIFFTCTKC 136
QTIF++C +C
Sbjct: 105 QTIFYSCPEC 114
>gi|156372965|ref|XP_001629305.1| predicted protein [Nematostella vectensis]
gi|156216302|gb|EDO37242.1| predicted protein [Nematostella vectensis]
Length = 109
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 30/133 (22%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG+ILPL + V C +C F
Sbjct: 2 FECDPDFCPVCGSILPLPGLEDVVSCKLCD--------------------------FQRD 35
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQ---KDKTEIADGPIVERKCKRCNNDTMSYATLQLRSA 123
A FEE++ FN V+KEK+ K + GP+V+RKC C ++ M+Y T Q RSA
Sbjct: 36 TAEFEEVEIHSKKRFN-VDKEKRTTDDRKNDDTSGPMVDRKCPNCGHEGMTYMTRQTRSA 94
Query: 124 DEGQTIFFTCTKC 136
DEGQT+F+ CT C
Sbjct: 95 DEGQTVFYICTDC 107
>gi|410958118|ref|XP_003985667.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Felis
catus]
Length = 123
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 28/136 (20%)
Query: 3 SEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGH 62
S +F + +FC CG+ILPL + V C C
Sbjct: 6 SRSHFQSDLDFCPDCGSILPLPGVEDTVTCIRCG-------------------------- 39
Query: 63 FNLFLAVFEE--IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQL 120
F++ + FE+ ++ + H D+ GP+V+R+C RC ++ M+Y T Q+
Sbjct: 40 FSVDVRDFEQKVVRTTFVFHKVGTAVPVAADEGPEFQGPVVDRRCSRCGHEGMAYHTRQM 99
Query: 121 RSADEGQTIFFTCTKC 136
RSADEGQT+F+TCT C
Sbjct: 100 RSADEGQTVFYTCTSC 115
>gi|345796976|ref|XP_545465.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Canis lupus
familiaris]
Length = 123
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 24/134 (17%)
Query: 3 SEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGH 62
S F + +FC CG++LPL + V C C +G + ++ F+G
Sbjct: 6 SGSRFQSDLDFCPDCGSVLPLPGAQDAVTCVRC--GFG-------------VPVRDFEGK 50
Query: 63 FNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRS 122
VF ++ T +++ E+ GP+V+R+C RC ++ M+Y T Q+RS
Sbjct: 51 VVRTRIVFNQV--------GTAVPAPVQEEPEL-QGPVVDRRCSRCGHEGMAYHTRQMRS 101
Query: 123 ADEGQTIFFTCTKC 136
ADEGQT+F+TCT C
Sbjct: 102 ADEGQTVFYTCTSC 115
>gi|390461348|ref|XP_002746345.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Callithrix
jacchus]
Length = 153
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FCS+CG++LPL + V C C + + ++ F+G
Sbjct: 40 FQSDLDFCSECGSVLPLPGAQDTVTCTRCGFN---------------INVRDFEGKVVKT 84
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + +VE+ + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 85 SVVFHQLGTAMPV---SVEEGPE------FQGPVVDRRCSRCGHEGMAYHTRQMRSADEG 135
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 136 QTVFYTCTNC 145
>gi|241643366|ref|XP_002411049.1| DNA-directed RNA polymerase I, putative [Ixodes scapularis]
gi|215503680|gb|EEC13174.1| DNA-directed RNA polymerase I, putative [Ixodes scapularis]
Length = 121
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 23/136 (16%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFK 60
M S F +++FC CG++LPL + V C C + ++ F
Sbjct: 1 MESSSCFASDTDFCKNCGSVLPLPGLEDFVVCRRCDAR---------------IDVRNFD 45
Query: 61 GHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQL 120
G F + K K+ + GP+V+RKC RC ++ M+YATLQ
Sbjct: 46 GLETTSKVTFNDRKVAL--------KKTSSASSAKPAGPLVDRKCSRCGHEGMTYATLQT 97
Query: 121 RSADEGQTIFFTCTKC 136
RSADEGQTIF++C +C
Sbjct: 98 RSADEGQTIFYSCPEC 113
>gi|355561482|gb|EHH18114.1| Zinc ribbon domain-containing protein 1 [Macaca mulatta]
gi|380789199|gb|AFE66475.1| DNA-directed RNA polymerase I subunit RPA12 [Macaca mulatta]
Length = 126
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FCS CG++LPL + V C C + + ++ F+G
Sbjct: 13 FQSDLDFCSDCGSVLPLPGAQDTVTCTRCGFN---------------INVRDFEGKVVKT 57
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + +VE+ + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 58 SVVFHQLGTAMPM---SVEEGPE------CQGPVVDRRCPRCGHEGMAYHTRQMRSADEG 108
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 109 QTVFYTCTNC 118
>gi|7657709|ref|NP_055411.1| DNA-directed RNA polymerase I subunit RPA12 [Homo sapiens]
gi|25777707|ref|NP_740753.1| DNA-directed RNA polymerase I subunit RPA12 [Homo sapiens]
gi|115392099|ref|NP_001065276.1| DNA-directed RNA polymerase I subunit RPA12 [Pan troglodytes]
gi|397519265|ref|XP_003829787.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Pan
paniscus]
gi|71649339|sp|Q9P1U0.1|RPA12_HUMAN RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|110287947|sp|Q1XHV8.1|RPA12_PANTR RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|7212805|gb|AAF40469.1|AF024617_1 transcription-associated zinc ribbon protein [Homo sapiens]
gi|12275847|gb|AAG50159.1|AF230337_1 nuclear RNA polymerase I small specific subunit Rpa12 [Homo
sapiens]
gi|12275850|gb|AAG50160.1|AF230338_1 nuclear RNA polymerase I small specific subunit Rpa12 [Homo
sapiens]
gi|15012007|gb|AAH10898.1| Zinc ribbon domain containing 1 [Homo sapiens]
gi|29792038|gb|AAH50608.1| Zinc ribbon domain containing 1 [Homo sapiens]
gi|48146335|emb|CAG33390.1| ZNRD1 [Homo sapiens]
gi|86197925|dbj|BAE78600.1| zinc ribbon domain containing, 1 [Homo sapiens]
gi|90960920|dbj|BAE92809.1| zinc ribbon domain containing, 1 [Pan troglodytes]
gi|90960924|dbj|BAE92812.1| zinc ribbon domain containing, 1 [Pan troglodytes]
gi|119623655|gb|EAX03250.1| zinc ribbon domain containing, 1, isoform CRA_a [Homo sapiens]
gi|119623656|gb|EAX03251.1| zinc ribbon domain containing, 1, isoform CRA_a [Homo sapiens]
gi|119623657|gb|EAX03252.1| zinc ribbon domain containing, 1, isoform CRA_a [Homo sapiens]
gi|167773175|gb|ABZ92022.1| zinc ribbon domain containing 1 [synthetic construct]
gi|410214642|gb|JAA04540.1| zinc ribbon domain containing 1 [Pan troglodytes]
gi|410259660|gb|JAA17796.1| zinc ribbon domain containing 1 [Pan troglodytes]
gi|410289506|gb|JAA23353.1| zinc ribbon domain containing 1 [Pan troglodytes]
gi|410328913|gb|JAA33403.1| zinc ribbon domain containing 1 [Pan troglodytes]
gi|410328915|gb|JAA33404.1| zinc ribbon domain containing 1 [Pan troglodytes]
Length = 126
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FCS CG++LPL + V C C + + ++ F+G
Sbjct: 13 FQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFN---------------INVRDFEGKVVKT 57
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + +VE+ + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 58 SVVFHQLGTAMPM---SVEEGPE------CQGPVVDRRCPRCGHEGMAYHTRQMRSADEG 108
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 109 QTVFYTCTNC 118
>gi|169234608|ref|NP_001108417.1| DNA-directed RNA polymerase I subunit RPA12 [Macaca mulatta]
gi|402866315|ref|XP_003897332.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Papio
anubis]
gi|71153713|sp|Q5TM50.1|RPA12_MACMU RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|55700821|dbj|BAD69776.1| zinc ribbon domain containing, 1 [Macaca mulatta]
gi|355748389|gb|EHH52872.1| Zinc ribbon domain-containing protein 1 [Macaca fascicularis]
gi|383411777|gb|AFH29102.1| DNA-directed RNA polymerase I subunit RPA12 [Macaca mulatta]
gi|384944496|gb|AFI35853.1| DNA-directed RNA polymerase I subunit RPA12 [Macaca mulatta]
Length = 126
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FCS CG++LPL + V C C + + ++ F+G
Sbjct: 13 FQSDLDFCSDCGSVLPLPGAQDTVTCTRCGFN---------------INVRDFEGKVVKT 57
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + +VE+ + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 58 SVVFHQLGTAMPM---SVEEGPE------CQGPVVDRRCPRCGHEGMAYHTRQMRSADEG 108
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 109 QTVFYTCTNC 118
>gi|426352193|ref|XP_004043601.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Gorilla
gorilla gorilla]
Length = 123
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FCS CG++LPL + V C C + + ++ F+G
Sbjct: 10 FQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFN---------------INVRDFEGKVVKT 54
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + +VE+ + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 55 SVVFHQLGTAMPM---SVEEGPE------CQGPVVDRRCPRCGHEGMAYHTRQMRSADEG 105
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 106 QTVFYTCTNC 115
>gi|297661164|ref|XP_002809154.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 isoform 2
[Pongo abelii]
gi|395728671|ref|XP_003775416.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Pongo
abelii]
Length = 126
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FCS CG++LPL + V C C + + ++ F+G
Sbjct: 13 FQSDLDFCSDCGSVLPLPGAQDTVTCTRCGFN---------------INVRDFEGKVVKT 57
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + +VE+ + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 58 SVVFHQLGTAMPM---SVEEGPE------CQGPVVDRRCPRCGHEGMAYHTRQMRSADEG 108
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 109 QTVFYTCTNC 118
>gi|332245855|ref|XP_003272067.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Nomascus
leucogenys]
Length = 126
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FCS CG++LPL + V C C + + ++ F+G
Sbjct: 13 FQSDLDFCSDCGSVLPLPGAQDTVTCTRCGFN---------------INVRDFEGKVVKT 57
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + +VE+ + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 58 SVVFHQLGTAMPM---SVEEGPE------CQGPVVDRRCPRCGHEGMAYHTRQMRSADEG 108
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 109 QTVFYTCTNC 118
>gi|301604476|ref|XP_002931883.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Xenopus
(Silurana) tropicalis]
Length = 122
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 29/133 (21%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F+ S+FCS CG++LP + V C C + H F
Sbjct: 8 FSSVSDFCSDCGSVLPPPGIQDTVTCLRCS----------------------HRTHVTEF 45
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIA---DGPIVERKCKRCNNDTMSYATLQLRSA 123
L + ++ FN ++ K ++TE A GP+++R+C RC + M+Y T Q+RSA
Sbjct: 46 LGKC----VQTSVVFNKLDTIKLSNETEEAGELKGPLIDRRCSRCGFERMAYHTRQMRSA 101
Query: 124 DEGQTIFFTCTKC 136
DEGQT+F+TC KC
Sbjct: 102 DEGQTVFYTCVKC 114
>gi|431907041|gb|ELK11159.1| DNA-directed RNA polymerase I subunit RPA12 [Pteropus alecto]
Length = 204
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 26/131 (19%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S + ++ F+G
Sbjct: 38 FQSDLDFCPDCGSVLPLPGTQDTVTCTRCGFS---------------INVRDFEG----- 77
Query: 67 LAVFEEIKAEYTIH-FNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADE 125
+ +K + H T + E GP+V+R+C RC ++ M+Y T Q+RSADE
Sbjct: 78 ----KVVKTSFVFHKLGTAMPMSMEGGPEF-QGPVVDRRCSRCGHEGMAYHTRQMRSADE 132
Query: 126 GQTIFFTCTKC 136
GQT+F+TCT C
Sbjct: 133 GQTVFYTCTNC 143
>gi|403308945|ref|XP_003944898.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Saimiri
boliviensis boliviensis]
Length = 123
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FCS+CG++LPL + V C C + + ++ F+G
Sbjct: 10 FQSDLDFCSECGSVLPLPGAQDTVTCPRCGFN---------------INVRDFEGKVVKT 54
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + +VE+ + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 55 SVVFHQLGTAMPV---SVEEGPE------FQGPVVDRRCSRCGHEGMAYHTRQMRSADEG 105
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 106 QTVFYTCTNC 115
>gi|417407905|gb|JAA50545.1| Putative dna-directed rna polymerase i subunit rpa12-like protein,
partial [Desmodus rotundus]
Length = 129
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S ++ + ++ ++F K
Sbjct: 16 FQSDLDFCPDCGSVLPLPGTQDTVPCARCGFSINVRDFEGKVVKTSVVFHK--------- 66
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
L + + E F GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 67 LGTTKPMSMEEGPEFQ---------------GPVVDRRCSRCGHEGMAYHTRQMRSADEG 111
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 112 QTVFYTCTSC 121
>gi|444705692|gb|ELW47089.1| DNA-directed RNA polymerase I subunit RPA12 [Tupaia chinensis]
Length = 127
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S ++ + ++ ++F K
Sbjct: 10 FLSDLDFCPDCGSVLPLPGAQDAVSCTRCGLSIHVRDFEEKVVRTSVVFHK--------- 60
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
L + AE F GP+++R+C RC ++ M+Y T Q+RSADEG
Sbjct: 61 LGTARPLSAEEGPEFQ---------------GPVLDRRCSRCGHEGMAYHTRQMRSADEG 105
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 106 QTVFYTCTNC 115
>gi|354490663|ref|XP_003507476.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Cricetulus griseus]
Length = 174
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S + ++ F+G
Sbjct: 61 FQSDLDFCPDCGSVLPLPGTQDAVVCPRCGFS---------------IDVRDFEGKAVKT 105
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ A +VE+ + + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 106 SVVFHKLGAAIP---TSVEEGPE------SQGPVVDRRCPRCGHEGMAYHTRQMRSADEG 156
Query: 127 QTIFFTCTKC 136
QT+F+TC C
Sbjct: 157 QTVFYTCVNC 166
>gi|348550748|ref|XP_003461193.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cavia
porcellus]
Length = 123
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 24/135 (17%)
Query: 2 TSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKG 61
+S F + +FC +CG++LPL + + C C ++ + ++ ++F K
Sbjct: 5 SSGSSFQSDLDFCPECGSVLPLPGAQDTLACTRCGFPVNVRDLEGKVVKTSVMFHK---- 60
Query: 62 HFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLR 121
L ++ E F GP+V+R+C RC ++ M+Y T Q+R
Sbjct: 61 -----LGTAFPVRGEEGHEFQ---------------GPVVDRRCSRCGHEGMTYHTRQMR 100
Query: 122 SADEGQTIFFTCTKC 136
SADEGQT+F+TCT C
Sbjct: 101 SADEGQTVFYTCTNC 115
>gi|327266376|ref|XP_003217982.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Anolis carolinensis]
Length = 120
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 27/135 (20%)
Query: 3 SEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGH 62
S F E +FC +CGT+LPL + V C C QE
Sbjct: 4 SSSCFESELDFCPECGTVLPLPGLQDKVACRCCSFFIDVQE------------------- 44
Query: 63 FNLFLAVFEEIKAEYTIHFNTVEKEK-QKDKTEIADGPIVERKCKRCNNDTMSYATLQLR 121
FE+ + ++ FN + + D + GP+++RKC +C + M+Y T Q+R
Sbjct: 45 -------FEKRIIDTSVTFNRTDSTNLEVDGGKAVKGPLIDRKCPQCGQEGMTYHTRQMR 97
Query: 122 SADEGQTIFFTCTKC 136
SADEGQT+F+TC C
Sbjct: 98 SADEGQTVFYTCIHC 112
>gi|355731001|gb|AES10382.1| zinc ribbon domain containing 1 [Mustela putorius furo]
Length = 119
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 30/137 (21%)
Query: 3 SEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGH 62
S F + +FC CG++LPL + V C C
Sbjct: 6 SGSRFQSDLDFCPDCGSVLPLPGAQDTVTCVRCA-------------------------- 39
Query: 63 FNLFLAVFEEIKAEYTIHFN---TVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQ 119
F + + FE + FN T ++ E GP+V+R+C RC ++ M+Y T Q
Sbjct: 40 FRVPVRDFEGRAVSSCVVFNKPGTAAPAPAEEGPEF-QGPVVDRRCPRCGHEGMAYHTRQ 98
Query: 120 LRSADEGQTIFFTCTKC 136
+RSADEGQT+F+TCT+C
Sbjct: 99 MRSADEGQTVFYTCTRC 115
>gi|440889570|gb|ELR44661.1| DNA-directed RNA polymerase I subunit RPA12, partial [Bos grunniens
mutus]
Length = 119
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S ++ + ++ ++F K
Sbjct: 13 FQSDLDFCPDCGSVLPLPGVQDAVSCTRCGFSINVRDFEGKVVKTSVVFNK--------- 63
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
L + E F GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 64 LGTAMPLSMEEGPEFQ---------------GPVVDRRCSRCGHEGMAYHTRQMRSADEG 108
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 109 QTVFYTCTNC 118
>gi|114051922|ref|NP_001039865.1| DNA-directed RNA polymerase I subunit RPA12 [Bos taurus]
gi|358418403|ref|XP_003583930.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Bos taurus]
gi|110287946|sp|Q1RMP0.1|RPA12_BOVIN RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|92097539|gb|AAI14800.1| Zinc ribbon domain containing 1 [Bos taurus]
gi|296474270|tpg|DAA16385.1| TPA: DNA-directed RNA polymerase I subunit RPA12 [Bos taurus]
Length = 123
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S ++ + ++ ++F K
Sbjct: 10 FQSDLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNK--------- 60
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
L + E F GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 61 LGTAMPLSMEEGPEFQ---------------GPVVDRRCSRCGHEGMAYHTRQMRSADEG 105
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 106 QTVFYTCTNC 115
>gi|291395912|ref|XP_002714370.1| PREDICTED: zinc ribbon domain containing 1-like [Oryctolagus
cuniculus]
Length = 243
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S + ++ F+G
Sbjct: 130 FQSDLDFCPDCGSVLPLPGAQDTVVCTRCGFS---------------IHVRDFEGKV--- 171
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
++ + H ++ GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 172 ------VQTSFVFHKLGAAVPASAEEGPEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEG 225
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 226 QTVFYTCTSC 235
>gi|229367102|gb|ACQ58531.1| DNA-directed RNA polymerase I subunit RPA12 [Anoplopoma fimbria]
Length = 118
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 29/133 (21%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + FCS+CG +LPL + V+C C F +
Sbjct: 4 FGGDPNFCSECGNVLPLPGLQDTVRCPRCS--------------------------FCIP 37
Query: 67 LAVFEEIKAEYTIHFNTVEKEK---QKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSA 123
+A F + T+ FN ++ + ++ GP+++R+C RCN + M Y T Q+RSA
Sbjct: 38 VAEFSGQEIRSTVIFNPEKQSSVALEDEEGSELKGPVIDRRCSRCNKEGMVYHTRQMRSA 97
Query: 124 DEGQTIFFTCTKC 136
DEG+T+FFTC C
Sbjct: 98 DEGRTVFFTCIHC 110
>gi|344257162|gb|EGW13266.1| DNA-directed RNA polymerase I subunit RPA12 [Cricetulus griseus]
Length = 123
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S + ++ F+G
Sbjct: 10 FQSDLDFCPDCGSVLPLPGTQDAVVCPRCGFS---------------IDVRDFEGKAVKT 54
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ A +VE+ + + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 55 SVVFHKLGAAIP---TSVEEGPE------SQGPVVDRRCPRCGHEGMAYHTRQMRSADEG 105
Query: 127 QTIFFTCTKC 136
QT+F+TC C
Sbjct: 106 QTVFYTCVNC 115
>gi|426250668|ref|XP_004019056.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Ovis aries]
Length = 123
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S ++ + ++ ++F K
Sbjct: 10 FQSDLDFCPDCGSVLPLPGAQDAVACTRCGFSINVRDFEGKVVKTSVVFNK--------- 60
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
L + E F GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 61 LGTAMPLSMEEGPEFQ---------------GPVVDRRCSRCGHEGMAYHTRQMRSADEG 105
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 106 QTVFYTCTNC 115
>gi|395832491|ref|XP_003789304.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Otolemur
garnettii]
Length = 180
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S ++ + ++ +F K
Sbjct: 67 FQSDLDFCPDCGSVLPLPGAQDAVTCTRCGFSINVRDFEGKVVKTSFVFHK--------- 117
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
L + E F GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 118 LGTAMHMSVEEGPEFQ---------------GPVVDRRCSRCGHEGMAYHTRQMRSADEG 162
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 163 QTVFYTCTNC 172
>gi|301789653|ref|XP_002930246.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Ailuropoda melanoleuca]
Length = 123
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 61/136 (44%), Gaps = 28/136 (20%)
Query: 3 SEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGH 62
S F + +FC CG+ILPL + V C C
Sbjct: 6 SRSRFQSDLDFCPDCGSILPLPGAQDTVTCVRCG-------------------------- 39
Query: 63 FNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIAD--GPIVERKCKRCNNDTMSYATLQL 120
F + A FE I FN + E + GP+V+R+C RC ++ M+Y T Q+
Sbjct: 40 FRVXXADFEGKVVNTCIVFNKLGTAVPVSVDEGPEFQGPVVDRRCSRCGHEGMAYHTRQM 99
Query: 121 RSADEGQTIFFTCTKC 136
RSADEGQT+F+TCT C
Sbjct: 100 RSADEGQTVFYTCTSC 115
>gi|351694594|gb|EHA97512.1| DNA-directed RNA polymerase I subunit RPA12, partial
[Heterocephalus glaber]
Length = 119
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 24/135 (17%)
Query: 2 TSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKG 61
+S F + +FC +CG++LPL + + C C ++ F+G
Sbjct: 7 SSGSSFQSDLDFCPECGSVLPLPGAQDTLACTRCGFPVSARD---------------FEG 51
Query: 62 HFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLR 121
+K H ++ + GP+V+R+C RC ++ M+Y T Q+R
Sbjct: 52 KV---------VKTSVVFHRLGTAMPAWGEEGPESQGPVVDRRCSRCGHEGMAYHTRQMR 102
Query: 122 SADEGQTIFFTCTKC 136
SADEGQT+F+TCT C
Sbjct: 103 SADEGQTVFYTCTNC 117
>gi|213510798|ref|NP_001134399.1| DNA-directed RNA polymerase I subunit RPA12 [Salmo salar]
gi|209732998|gb|ACI67368.1| DNA-directed RNA polymerase I subunit RPA12 [Salmo salar]
gi|223646310|gb|ACN09913.1| DNA-directed RNA polymerase I subunit RPA12 [Salmo salar]
gi|223672157|gb|ACN12260.1| DNA-directed RNA polymerase I subunit RPA12 [Salmo salar]
Length = 117
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 28/132 (21%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F+ + FC +CG +LPL + V C C S L + F G
Sbjct: 4 FSGDPNFCPECGNVLPLPGLQDTVSCPRCAFS---------------LPVTEFSG----- 43
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIAD--GPIVERKCKRCNNDTMSYATLQLRSAD 124
+EI++ ++ FN +E + E ++ G +++R+C RCN + M Y T Q+RSAD
Sbjct: 44 ----QEIRS--SVVFNPLEGSSVAVEEEDSELKGAVIDRRCSRCNKEGMVYHTRQMRSAD 97
Query: 125 EGQTIFFTCTKC 136
EGQT+FFTC C
Sbjct: 98 EGQTVFFTCMHC 109
>gi|61806687|ref|NP_001013572.1| DNA-directed RNA polymerase I subunit RPA12 [Danio rerio]
gi|60649694|gb|AAH90545.1| Zgc:110825 [Danio rerio]
Length = 118
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 23/130 (17%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC +CG ILPL + C C Q+ ++ ++F + + +
Sbjct: 4 FRGDVDFCPECGNILPLPSRLNTITCPRCSFKISVQDFTSQVIKSSVMFNPLDQSNVAVG 63
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
A E+K GP+++RKC RCN + M Y T Q+RSADEG
Sbjct: 64 SAEDAELK-----------------------GPVIDRKCSRCNKEGMVYHTRQMRSADEG 100
Query: 127 QTIFFTCTKC 136
QT+FFTC C
Sbjct: 101 QTVFFTCIHC 110
>gi|126632631|emb|CAM56335.1| novel protein [Danio rerio]
Length = 118
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 23/130 (17%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC +CG ILPL + C C Q+ ++ ++F + + +
Sbjct: 4 FRGDVDFCPECGNILPLPSRLNTITCPRCSFKISVQDFTSQVIKSSVMFNPLDQSNVAVE 63
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
A E+K GP+++RKC RCN + M Y T Q+RSADEG
Sbjct: 64 SAEDAELK-----------------------GPVIDRKCSRCNKEGMVYHTRQMRSADEG 100
Query: 127 QTIFFTCTKC 136
QT+FFTC C
Sbjct: 101 QTVFFTCIHC 110
>gi|277349595|ref|NP_001162172.1| DNA-directed RNA polymerase I subunit RPA12 [Sus scrofa]
gi|194039982|ref|XP_001929376.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Sus
scrofa]
gi|56805530|dbj|BAD83381.1| ZNRD1 [Sus scrofa]
gi|56805536|dbj|BAD83386.1| transcription-associated zinc ribbon protein [Sus scrofa]
gi|211926938|dbj|BAG82679.1| zinc ribbon domain containing protein 1 [Sus scrofa]
Length = 123
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S + ++ F+G
Sbjct: 10 FQSDLDFCPDCGSVLPLPGTQDAVICTRCGFS---------------INVRDFEGKVVKT 54
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF+++ T ++ E GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 55 SVVFQKV--------GTAMPMSMEEGPEF-QGPVVDRRCPRCGHEGMAYHTRQMRSADEG 105
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 106 QTVFYTCTNC 115
>gi|324519873|gb|ADY47501.1| DNA-directed RNA polymerase I subunit RPA12 [Ascaris suum]
Length = 112
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 61/131 (46%), Gaps = 29/131 (22%)
Query: 7 FNVESEFCSKCGTILPLFD-FKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNL 65
F + EFCS CGTILPL D V C +C T + K N
Sbjct: 2 FAADEEFCSTCGTILPLPDTAPTTVTCALCHTKW------------------HIKPVINK 43
Query: 66 FLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADE 125
+ E+I E+ + K + PIVE+ C++C +D MSYA Q RSADE
Sbjct: 44 LVYRTEKI----------YERRLAETKEGDVENPIVEKICEKCGHDKMSYACRQTRSADE 93
Query: 126 GQTIFFTCTKC 136
GQT+F+TC C
Sbjct: 94 GQTVFYTCLNC 104
>gi|281346719|gb|EFB22303.1| hypothetical protein PANDA_020626 [Ailuropoda melanoleuca]
Length = 121
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Query: 3 SEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGH 62
S F + +FC CG+ILPL + V C C + + F+G
Sbjct: 7 SRSRFQSDLDFCPDCGSILPLPGAQDTVTCVRCGFATTVLPAR-----------ADFEGK 55
Query: 63 FNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRS 122
VF ++ + D+ GP+V+R+C RC ++ M+Y T Q+RS
Sbjct: 56 VVNTCIVFNKLGTAVPVSV---------DEGPEFQGPVVDRRCSRCGHEGMAYHTRQMRS 106
Query: 123 ADEGQTIFFTCTKC 136
ADEGQT+F+TCT C
Sbjct: 107 ADEGQTVFYTCTSC 120
>gi|432883131|ref|XP_004074220.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Oryzias latipes]
gi|432883133|ref|XP_004074221.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Oryzias latipes]
Length = 118
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 26/136 (19%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFK 60
M+S G + FC CG++LPL V+C C E LG +I F
Sbjct: 1 MSSNGR---DPNFCQDCGSVLPLPGLSDTVRCPRCCLCTPVTE----FLGREIQSGVIFN 53
Query: 61 GHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQL 120
LA+ +E +E GP+++R+C RCN + M Y T Q+
Sbjct: 54 PAEQTLLALEDEENSELK-------------------GPVIDRRCTRCNKEGMIYHTRQM 94
Query: 121 RSADEGQTIFFTCTKC 136
RSADEGQT+FFTC C
Sbjct: 95 RSADEGQTVFFTCIHC 110
>gi|225708526|gb|ACO10109.1| DNA-directed RNA polymerase I subunit 12 [Osmerus mordax]
Length = 118
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 31/134 (23%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + FC +CG +LPL + V C C F++
Sbjct: 4 FRGDPNFCPECGNVLPLPAMQDTVNCPRCS--------------------------FSIP 37
Query: 67 LAVFEEIKAEYTIHFNTVEKE----KQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRS 122
+ F K T+ FN +E+ + ++ +E+ G +++R+C RCN + M Y T Q+RS
Sbjct: 38 VIDFAGQKITSTVVFNPIEQSSITIEDEEDSELK-GAVIDRRCSRCNKEGMVYHTRQMRS 96
Query: 123 ADEGQTIFFTCTKC 136
ADEGQT+FFTC C
Sbjct: 97 ADEGQTVFFTCIHC 110
>gi|390333836|ref|XP_003723788.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Strongylocentrotus purpuratus]
Length = 121
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 33/141 (23%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFK 60
M ++ F+V EFC +CGTILP F +G + Y K SY T
Sbjct: 1 MDADTTFSVAKEFCPRCGTILP-FPERGSLDVYCKKCSYQTSAT---------------- 43
Query: 61 GHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIAD-----GPIVERKCKRCNNDTMSY 115
+ A+ H + E++ KTE GP+V+R C C +D + Y
Sbjct: 44 -----------DTWADVVYHSHRKMNERRTRKTERGHPSEDLGPVVDRACSHCGHDGLHY 92
Query: 116 ATLQLRSADEGQTIFFTCTKC 136
T Q RSADEGQT+F+ C C
Sbjct: 93 HTRQTRSADEGQTVFYFCPSC 113
>gi|149754819|ref|XP_001490389.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Equus
caballus]
Length = 168
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S + F+G
Sbjct: 55 FQSDLDFCPDCGSVLPLPGAQDTVTCTRCGFSINVLD---------------FEGKV--- 96
Query: 67 LAVFEEIKAEYTIH-FNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADE 125
+K + H T ++ E GP+V+R+C RC ++ M+Y T Q+RSADE
Sbjct: 97 ------VKTSFVFHKLGTAMPMSMEEGPEFQ-GPVVDRRCSRCGHEGMAYHTRQMRSADE 149
Query: 126 GQTIFFTCTKC 136
GQT+F+TCT C
Sbjct: 150 GQTVFYTCTNC 160
>gi|442763267|gb|JAA73792.1| Putative dna-directed rna polymerase i, partial [Ixodes ricinus]
Length = 115
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 23/133 (17%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFK 60
M S F +++FC CG++LPL + V C C + ++ F
Sbjct: 1 MESSNSFVSDTDFCKICGSVLPLPGLEDFVVCRRCDAK---------------IDVRNFD 45
Query: 61 GHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQL 120
G F + K K+ + GP+V+RKC RC ++ M+YATLQ
Sbjct: 46 GLETTSKVTFNDRKVAL--------KKTSSASSAKPAGPLVDRKCSRCGHEGMTYATLQT 97
Query: 121 RSADEGQTIFFTC 133
RSADEGQTIF++C
Sbjct: 98 RSADEGQTIFYSC 110
>gi|255724982|ref|XP_002547420.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240135311|gb|EER34865.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 123
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ CG +L D+KC VC SY P F + + E+
Sbjct: 9 FCNFCGNLLDSHSSTSDIKCGVCTASY-----------PKSKF-----ANLKVVTTSSED 52
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
+V K K K E+ DG ++ KC +C N+ M Y TLQLRSADEG T+F+T
Sbjct: 53 AFPSTLKSARSVVKTSLK-KDELDDGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYT 111
Query: 133 CTKC 136
CTKC
Sbjct: 112 CTKC 115
>gi|358418405|ref|XP_003583931.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Bos taurus]
Length = 129
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 18/130 (13%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S + + F+G
Sbjct: 10 FQSDLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRV---------LTACADFEGKVVKT 60
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + + + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 61 SVVFNKLGTAMPLSMEEGPEFQ---------GPVVDRRCSRCGHEGMAYHTRQMRSADEG 111
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 112 QTVFYTCTNC 121
>gi|344306362|ref|XP_003421857.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Loxodonta africana]
Length = 123
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 26/131 (19%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S ++ F+G
Sbjct: 10 FQSDLDFCPDCGSVLPLPGVQDTVTCTRCGFSVN---------------VRDFEGKV--- 51
Query: 67 LAVFEEIKAEYTIH-FNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADE 125
+K + H T ++ E GP+++R+C RC ++ M+Y T Q+RSADE
Sbjct: 52 ------VKTSFVFHKLGTALPTSVEEGPEF-QGPVIDRRCSRCGHEGMAYHTRQMRSADE 104
Query: 126 GQTIFFTCTKC 136
GQT+F+TCT C
Sbjct: 105 GQTVFYTCTNC 115
>gi|320580300|gb|EFW94523.1| RNA polymerase I subunit A12.2 [Ogataea parapolymorpha DL-1]
Length = 123
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 25/128 (19%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLL----GPDILFLKRFKGHFNLFLA 68
FC CGT+L F + ++C +CK +Y ++ L + PD F +
Sbjct: 9 FCQDCGTLLDSFANRPSIQCQMCKRTYESKHFANLKVVTHTAPDA------------FPS 56
Query: 69 VFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQT 128
+ K+ T +E+ +G ++ KC +C ND M Y TLQLRSADEG T
Sbjct: 57 SLKSKKSLVKTSLKT---------SEVEEGATIKEKCPQCGNDEMQYHTLQLRSADEGAT 107
Query: 129 IFFTCTKC 136
+F+TCT C
Sbjct: 108 VFYTCTSC 115
>gi|47087087|ref|NP_998732.1| DNA-directed RNA polymerase I subunit RPA12 [Rattus norvegicus]
gi|261490677|ref|NP_001159772.1| DNA-directed RNA polymerase I subunit RPA12 [Rattus norvegicus]
gi|71153715|sp|Q6MFY5.1|RPA12_RAT RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|46237691|emb|CAE84062.1| zinc ribbon domain containing, 1 [Rattus norvegicus]
gi|149029352|gb|EDL84612.1| zinc ribbon domain containing, 1, isoform CRA_a [Rattus norvegicus]
gi|149029353|gb|EDL84613.1| zinc ribbon domain containing, 1, isoform CRA_a [Rattus norvegicus]
Length = 123
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S + ++ F G
Sbjct: 10 FQSDLDFCPDCGSVLPLPGVQDTVICPRCGFS---------------IDVRDFGGKVVKT 54
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + D+ + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 55 SVVFNKLGTVIPMSV---------DEGPESQGPVVDRRCSRCGHEGMAYYTRQMRSADEG 105
Query: 127 QTIFFTCTKC 136
QT+F+TC C
Sbjct: 106 QTVFYTCINC 115
>gi|348542186|ref|XP_003458567.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Oreochromis niloticus]
Length = 117
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 28/132 (21%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F FC +CG +LPL V C C F +
Sbjct: 4 FGGGPNFCPECGNVLPLPGIPDVVCCPGCS--------------------------FRIP 37
Query: 67 LAVFEEIKAEYTIHFNTVEKE--KQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSAD 124
++ F + + FN VE+ Q ++ GP+++R+C CN + M Y T Q+RSAD
Sbjct: 38 VSEFSGQEIRSAVVFNPVEQAPVSQDEEDSEMKGPVIDRRCSHCNKEGMIYHTRQMRSAD 97
Query: 125 EGQTIFFTCTKC 136
EGQT+FFTC C
Sbjct: 98 EGQTVFFTCIHC 109
>gi|254568716|ref|XP_002491468.1| RNA polymerase I subunit A12.2 [Komagataella pastoris GS115]
gi|238031265|emb|CAY69188.1| RNA polymerase I subunit A12.2 [Komagataella pastoris GS115]
gi|328352022|emb|CCA38421.1| DNA-directed RNA polymerase I subunit A12 [Komagataella pastoris
CBS 7435]
Length = 123
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 17/124 (13%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC +CG +L + + C VC+ SY T KRFK + + +
Sbjct: 9 FCVECGNLLDSVAGQKSIDCNVCERSYDT---------------KRFKNLSVVTKSSPDA 53
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
+ + V+ + D E+ DG ++ KC +C N+ M Y TLQLRSADEG T+F+T
Sbjct: 54 FPSTLRAKASLVKTSLKSD--ELEDGATIKEKCPQCGNEEMQYHTLQLRSADEGATVFYT 111
Query: 133 CTKC 136
C KC
Sbjct: 112 CPKC 115
>gi|12963545|ref|NP_075651.1| DNA-directed RNA polymerase I subunit RPA12 [Mus musculus]
gi|71153714|sp|Q791N7.1|RPA12_MOUSE RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|12275852|gb|AAG50161.1|AF230339_1 nuclear RNA polymerase I small specific subunit Rpa12 [Mus
musculus]
gi|12275854|gb|AAG50162.1|AF230340_1 nuclear RNA polymerase I small specific subunit Rpa12 [Mus
musculus]
gi|12834550|dbj|BAB22954.1| unnamed protein product [Mus musculus]
gi|12838841|dbj|BAB24350.1| unnamed protein product [Mus musculus]
gi|27695655|gb|AAH43016.1| Znrd1 protein [Mus musculus]
gi|148691368|gb|EDL23315.1| zinc ribbon domain containing, 1, isoform CRA_a [Mus musculus]
gi|148691369|gb|EDL23316.1| zinc ribbon domain containing, 1, isoform CRA_a [Mus musculus]
Length = 123
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S + ++ +G
Sbjct: 10 FQSDLDFCPDCGSVLPLPGIQDTVICSRCGFS---------------IDVRDCEGKVVKT 54
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ A TI + E + + GP+++R+C RC ++ M+Y T Q+RSADEG
Sbjct: 55 SVVFNKLGA--TIPLSVDEGPELQ-------GPVIDRRCPRCGHEGMAYHTRQMRSADEG 105
Query: 127 QTIFFTCTKC 136
QT+F+TC C
Sbjct: 106 QTVFYTCINC 115
>gi|149240061|ref|XP_001525906.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450029|gb|EDK44285.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 123
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 23/127 (18%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLL---GPDILFLKRFKGHFNLFLAV 69
FCS CG +L D++C +C SY + L + D F + K
Sbjct: 9 FCSYCGDLLDSHSASSDIQCNICLASYPKSQFANLKVVTKSADDAFPSKLK--------- 59
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+ + V+ +KD E+ +G ++ KC +C N+ M Y TLQLRSADEG T+
Sbjct: 60 ---------LARSVVKTSLKKD--ELDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATV 108
Query: 130 FFTCTKC 136
F+TCT+C
Sbjct: 109 FYTCTEC 115
>gi|241951826|ref|XP_002418635.1| DNA-directed RNA polymerase I, putative [Candida dubliniensis CD36]
gi|223641974|emb|CAX43938.1| DNA-directed RNA polymerase I, putative [Candida dubliniensis CD36]
Length = 123
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 23/127 (18%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLL---GPDILFLKRFKGHFNLFLAV 69
FC+ CG +L D+KC VC +Y + L + D F + K ++
Sbjct: 9 FCNYCGNLLDSHSSSSDIKCTVCSAAYPKSKFANLKVVTKSSDDAFPSKLKSARSV---- 64
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
V+ +KD E+ +G ++ KC +C N+ M Y TLQLRSADEG T+
Sbjct: 65 --------------VKTSLKKD--ELDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATV 108
Query: 130 FFTCTKC 136
F+TCT C
Sbjct: 109 FYTCTNC 115
>gi|50304397|ref|XP_452148.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641280|emb|CAH02541.1| KLLA0B13860p [Kluyveromyces lactis]
Length = 160
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 60/128 (46%), Gaps = 24/128 (18%)
Query: 13 FCSKCGTILPLFDF-KGDVKCYVCKTSYGTQEQQPLLL---GPDILFLKRFKGHFNLFLA 68
FC +CG +L + +G ++C C SY + + Q L + D F + + +L
Sbjct: 45 FCLECGDLLDGQESSQGKIRCNQCNASYNSSKFQNLKVVTSTNDKSFPSKIRSKKSLVKT 104
Query: 69 VFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQT 128
K E+ DG I+ KC +C ND M Y TLQLRSADEG T
Sbjct: 105 SIA--------------------KNELKDGAIINEKCPKCANDKMHYHTLQLRSADEGAT 144
Query: 129 IFFTCTKC 136
+F+TCT C
Sbjct: 145 VFYTCTAC 152
>gi|395536828|ref|XP_003770413.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Sarcophilus
harrisii]
Length = 132
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 23/123 (18%)
Query: 14 CSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEEI 73
C++CG+ILPL V C C S +E + ++ I+F K L V EE
Sbjct: 25 CTECGSILPLPGALDTVTCPRCGFSIDVREFEGKVVETSIVFHKLG----TTALIVSEEE 80
Query: 74 KAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
E GP+++R+C C ++ M+Y T Q+RSADEGQT+F+TC
Sbjct: 81 GPEL-------------------QGPVIDRRCSNCGHEGMAYHTRQMRSADEGQTVFYTC 121
Query: 134 TKC 136
T C
Sbjct: 122 TNC 124
>gi|68482488|ref|XP_714876.1| hypothetical protein CaO19.2287 [Candida albicans SC5314]
gi|68482611|ref|XP_714814.1| hypothetical protein CaO19.9827 [Candida albicans SC5314]
gi|46436409|gb|EAK95772.1| hypothetical protein CaO19.9827 [Candida albicans SC5314]
gi|46436474|gb|EAK95836.1| hypothetical protein CaO19.2287 [Candida albicans SC5314]
gi|238883622|gb|EEQ47260.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Candida
albicans WO-1]
Length = 123
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 23/127 (18%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLL---GPDILFLKRFKGHFNLFLAV 69
FC+ CG +L ++KC VC +Y + L + D F + K ++
Sbjct: 9 FCNYCGNLLDSHSSSSEIKCTVCSAAYPKSKFANLKVVTKSSDDAFPSKLKSARSV---- 64
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
V+ +KD E+ +G ++ KC +C N+ M Y TLQLRSADEG T+
Sbjct: 65 --------------VKTSLKKD--ELDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATV 108
Query: 130 FFTCTKC 136
F+TCT C
Sbjct: 109 FYTCTNC 115
>gi|344302756|gb|EGW33030.1| hypothetical protein SPAPADRAFT_150584 [Spathaspora passalidarum
NRRL Y-27907]
Length = 123
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ CG +L ++C+VC SY P F + + E+
Sbjct: 9 FCTYCGNLLDSHSSSSHIQCHVCHESY-----------PKSKF-----ANLKVITTSSED 52
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
+V K K K E+ +G ++ KC +C N+ MSY TLQLRSADEG T+F+T
Sbjct: 53 AFPSTLKSARSVVKTSLK-KDELDEGATIKEKCPKCGNEEMSYHTLQLRSADEGATVFYT 111
Query: 133 CTKC 136
CT C
Sbjct: 112 CTSC 115
>gi|354548101|emb|CCE44837.1| hypothetical protein CPAR2_406400 [Candida parapsilosis]
Length = 123
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 23/127 (18%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLL---GPDILFLKRFKGHFNLFLAV 69
FC+ CG +L D+KC +C +Y E L + D F + K ++
Sbjct: 9 FCTYCGDLLDSHSSTSDIKCTMCSATYPKSEFANLKVVTKSSDDAFPSKLKSARSV---- 64
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
V+ KD E+ +G ++ KC +C N+ M Y TLQLRSADEG T+
Sbjct: 65 --------------VKTSLSKD--ELDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATV 108
Query: 130 FFTCTKC 136
F+TC C
Sbjct: 109 FYTCPSC 115
>gi|327266378|ref|XP_003217983.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Anolis carolinensis]
Length = 104
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 41/134 (30%)
Query: 3 SEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGH 62
S F E +FC +CGT+LPL + V C C
Sbjct: 4 SSSCFESELDFCPECGTVLPLPGLQDKVACRCC--------------------------- 36
Query: 63 FNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRS 122
+ F+ V + E D + GP+++RKC +C + M+Y T Q+RS
Sbjct: 37 -SFFIDVQDSTNLEV-------------DGGKAVKGPLIDRKCPQCGQEGMTYHTRQMRS 82
Query: 123 ADEGQTIFFTCTKC 136
ADEGQT+F+TC C
Sbjct: 83 ADEGQTVFYTCIHC 96
>gi|344233023|gb|EGV64896.1| hypothetical protein CANTEDRAFT_104223 [Candida tenuis ATCC 10573]
Length = 123
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ CG +L K + C +C SY + L + + E
Sbjct: 9 FCTDCGNLLDKLGAKDTIDCRICSKSYPASKFANLKV-----------------VTTSAE 51
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
T+ N + ++ +G ++ KC +C +D M Y TLQLRSADEG T+F+T
Sbjct: 52 DAFPSTLKMNRSSVKTTLKNDDLGEGATIKEKCPKCGHDEMQYHTLQLRSADEGATVFYT 111
Query: 133 CTKC 136
CT C
Sbjct: 112 CTSC 115
>gi|146422240|ref|XP_001487061.1| hypothetical protein PGUG_00438 [Meyerozyma guilliermondii ATCC
6260]
gi|146388182|gb|EDK36340.1| hypothetical protein PGUG_00438 [Meyerozyma guilliermondii ATCC
6260]
Length = 123
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFL---AV 69
FC+ CG +L ++C VC SY G NL + +
Sbjct: 9 FCTSCGNLLDAAGSNTQIECKVCTASYPAS------------------GFANLKVVTQSA 50
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+ ++ + + V+ KD E+ +G ++ KC +C N+ M Y TLQLRSADEG T+
Sbjct: 51 EDAFPSQLKLKRSVVKTSLNKD--EMDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATV 108
Query: 130 FFTCTKC 136
F+TCT C
Sbjct: 109 FYTCTGC 115
>gi|410079138|ref|XP_003957150.1| hypothetical protein KAFR_0D03670 [Kazachstania africana CBS 2517]
gi|372463735|emb|CCF58015.1| hypothetical protein KAFR_0D03670 [Kazachstania africana CBS 2517]
Length = 125
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E+ DG +++ KC +C ND M Y TLQLRSADEG T+F+TCT C
Sbjct: 73 KNEVEDGAVIKEKCPKCGNDEMRYHTLQLRSADEGATVFYTCTAC 117
>gi|365981931|ref|XP_003667799.1| hypothetical protein NDAI_0A03990 [Naumovozyma dairenensis CBS 421]
gi|343766565|emb|CCD22556.1| hypothetical protein NDAI_0A03990 [Naumovozyma dairenensis CBS 421]
Length = 126
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E+ DG +++ KC +C ND M Y TLQLRSADEG T+F+TCT C
Sbjct: 74 KNELEDGAVIKEKCPKCGNDEMHYHTLQLRSADEGATVFYTCTSC 118
>gi|126138250|ref|XP_001385648.1| DNA-directed RNA polymerase I subunit A12 (RPA12) [Scheffersomyces
stipitis CBS 6054]
gi|126092926|gb|ABN67619.1| DNA-directed RNA polymerase I subunit A12 (RPA12) [Scheffersomyces
stipitis CBS 6054]
Length = 123
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ CG +L ++KC +C Y +F + + +
Sbjct: 9 FCTFCGNLLDATSSTNEIKCGLCSAGYPKS---------------KFANLKVVTTSSEDA 53
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
+ ++ + V+ +KD E+ DG ++ KC +C N+ M Y TLQLRSADEG T+F+T
Sbjct: 54 FPSVLKMNRSVVKTSLKKD--ELDDGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYT 111
Query: 133 CTKC 136
CT C
Sbjct: 112 CTSC 115
>gi|47211025|emb|CAF94694.1| unnamed protein product [Tetraodon nigroviridis]
Length = 141
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 63/157 (40%), Gaps = 53/157 (33%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + FC +CG ILP + V+C C F++
Sbjct: 3 FTSDLNFCPECGNILPPPGLQDTVRCPRCS--------------------------FSIP 36
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIAD--GPIV----------------------- 101
+A F+ + T+ N EK + E +D GP+V
Sbjct: 37 VAEFDGQQIRSTVVLNPAEKSAAVVEEEDSDLQGPVVGHGSGSASSGLGAPTSLLTVCLL 96
Query: 102 --ERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+R+C RCN + M Y T Q+RSADEGQT+FFTC C
Sbjct: 97 QIDRRCVRCNKEGMVYHTRQMRSADEGQTVFFTCVHC 133
>gi|334323673|ref|XP_003340420.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Monodelphis domestica]
Length = 117
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 14 CSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEEI 73
C +CG+ILPL V C C S +E + ++ + F K F V EE
Sbjct: 17 CPECGSILPLPGTLDIVTCPRCGFSIDVREFEGKVVETSVEFHKLGTTAF----LVSEEE 72
Query: 74 KAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
E+ GP+++R+C C ++ M+Y T Q+RSADEGQT+F+TC
Sbjct: 73 GPEF-------------------QGPVIDRRCSNCGHEGMAYHTRQMRSADEGQTVFYTC 113
Query: 134 TKC 136
T C
Sbjct: 114 TNC 116
>gi|358337889|dbj|GAA56216.1| DNA-directed RNA polymerase I subunit RPA12 [Clonorchis sinensis]
Length = 165
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 29/142 (20%)
Query: 13 FCSKCGTILPL-FDFKGDVKCYVCKTSYGTQEQQPLLL----GPDILFLKRFKG------ 61
FC CGT+LP + + C C T P + G ++ F +G
Sbjct: 27 FCYVCGTLLPHKLEATDSLICRKCHT--------PTFMHWFNGMEVSFTNELRGRDWSSL 78
Query: 62 ------HFNLFLAVFEEI-KAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMS 114
+F L ++I K+E T+ +E + + ++ DGP + ++C C ND M+
Sbjct: 79 QNTDSDYFKPMLKRAKKILKSELTLK-QALESQYADEPSQ--DGPSIRKECAYCGNDRMT 135
Query: 115 YATLQLRSADEGQTIFFTCTKC 136
Y TLQ RSADEGQT+ +TCT+C
Sbjct: 136 YVTLQTRSADEGQTVIYTCTQC 157
>gi|363750516|ref|XP_003645475.1| hypothetical protein Ecym_3155 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889109|gb|AET38658.1| Hypothetical protein Ecym_3155 [Eremothecium cymbalariae
DBVPG#7215]
Length = 125
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 19/126 (15%)
Query: 13 FCSKCGTIL--PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC CG +L P D+ C C Y P F + A
Sbjct: 9 FCLDCGNLLDNPSTVSGNDISCSQCDARY-----------PKSSFSNLKVVTYTADDAFP 57
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
++++ ++ T++K E+ DG ++ KC +C+ND M Y TLQLRSADEG T+F
Sbjct: 58 SSLRSKKSVVKTTLKKN------ELKDGATIKEKCPQCSNDEMHYHTLQLRSADEGATVF 111
Query: 131 FTCTKC 136
+TCT C
Sbjct: 112 YTCTSC 117
>gi|260942901|ref|XP_002615749.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851039|gb|EEQ40503.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 123
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 33/132 (25%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLG--------PDILFLKRFKGHFN 64
FC+ CG +L K + C VC SY + + L + P L LKR
Sbjct: 9 FCNDCGNLLDSVTAKPTLDCGVCHRSYQSSQFANLKVVTKSSEDAFPSSLKLKR------ 62
Query: 65 LFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSAD 124
+V K K+ E+ +G ++ KC +C N+ M Y TLQLRSAD
Sbjct: 63 ------------------SVVKTSLKND-ELEEGATIKEKCPKCGNEEMQYHTLQLRSAD 103
Query: 125 EGQTIFFTCTKC 136
EG T+F+TCT C
Sbjct: 104 EGATVFYTCTGC 115
>gi|448523122|ref|XP_003868858.1| Rpa12 DNA-directed RNA polymerase I [Candida orthopsilosis Co
90-125]
gi|380353198|emb|CCG25954.1| Rpa12 DNA-directed RNA polymerase I [Candida orthopsilosis]
Length = 123
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 23/127 (18%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLL---GPDILFLKRFKGHFNLFLAV 69
FC+ CG +L ++KC +C +Y + L + D F + K ++
Sbjct: 9 FCTYCGDLLDSHSSTSEIKCTICSATYPKSKFANLKVVTKSSDEAFPSKLKSARSV---- 64
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
V+ KD E+ +G ++ KC +C N+ M Y TLQLRSADEG T+
Sbjct: 65 --------------VKTSLSKD--ELDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATV 108
Query: 130 FFTCTKC 136
F+TC C
Sbjct: 109 FYTCPNC 115
>gi|168025177|ref|XP_001765111.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683698|gb|EDQ70106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 130
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ CG++L FD C +C Q+ Q G +I + + F L V
Sbjct: 12 FCNLCGSLLS-FDSASFASCLLCHNQRSVQDFQ----GKEIWY-RSTPQDFMRRLGVDLL 65
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
I+ E T + K K+ E+ +V +C RC N ++ Y T QLRSADEGQT+F+
Sbjct: 66 IQPEET-------QVKAKESDEMQQRAVVNDECPRCKNPSLEYYTKQLRSADEGQTVFYE 118
Query: 133 CTKC 136
C KC
Sbjct: 119 CPKC 122
>gi|312088800|ref|XP_003146000.1| hypothetical protein LOAG_10428 [Loa loa]
Length = 109
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 31/128 (24%)
Query: 11 SEFCSKCGTILPL-FDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAV 69
SEFCS+CGT+LPL + C C+T +
Sbjct: 3 SEFCSECGTVLPLPATAPVTITCSYCRTQWH----------------------------- 33
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIA-DGPIVERKCKRCNNDTMSYATLQLRSADEGQT 128
+ I+ + + +++ D E A + P+V++ C +C + MSYA Q RSADEGQT
Sbjct: 34 IKPIRNKLVYRSEKIYQKRMMDAKEGALENPVVDKICDKCGHGKMSYACRQTRSADEGQT 93
Query: 129 IFFTCTKC 136
+F+ C KC
Sbjct: 94 VFYMCLKC 101
>gi|6322523|ref|NP_012597.1| Rpa12p [Saccharomyces cerevisiae S288c]
gi|417695|sp|P32529.1|RPA12_YEAST RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=A12; AltName: Full=A12.2; AltName:
Full=DNA-directed RNA polymerase I 13.7 kDa polypeptide
gi|172462|gb|AAA34992.1| RNA polymerase I subunit A12.2 [Saccharomyces cerevisiae]
gi|531231|gb|AAB59319.1| RNA polymerase I A12.2 subunit [Saccharomyces cerevisiae]
gi|1015737|emb|CAA89591.1| RPA12 [Saccharomyces cerevisiae]
gi|1019685|gb|AAB39289.1| ORF YJR063w [Saccharomyces cerevisiae]
gi|45270516|gb|AAS56639.1| YJR063W [Saccharomyces cerevisiae]
gi|151945131|gb|EDN63382.1| RNA polymerase A [Saccharomyces cerevisiae YJM789]
gi|190409539|gb|EDV12804.1| RNA polymerase I A12.2 subunit [Saccharomyces cerevisiae RM11-1a]
gi|256273126|gb|EEU08081.1| Rpa12p [Saccharomyces cerevisiae JAY291]
gi|259147526|emb|CAY80777.1| Rpa12p [Saccharomyces cerevisiae EC1118]
gi|285812952|tpg|DAA08850.1| TPA: Rpa12p [Saccharomyces cerevisiae S288c]
gi|323304255|gb|EGA58029.1| Rpa12p [Saccharomyces cerevisiae FostersB]
gi|323308470|gb|EGA61715.1| Rpa12p [Saccharomyces cerevisiae FostersO]
gi|323332869|gb|EGA74272.1| Rpa12p [Saccharomyces cerevisiae AWRI796]
gi|323336953|gb|EGA78210.1| Rpa12p [Saccharomyces cerevisiae Vin13]
gi|323347867|gb|EGA82128.1| Rpa12p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354256|gb|EGA86099.1| Rpa12p [Saccharomyces cerevisiae VL3]
gi|349579248|dbj|GAA24411.1| K7_Rpa12p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764719|gb|EHN06240.1| Rpa12p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298489|gb|EIW09586.1| Rpa12p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 125
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E+ DG ++ KC +C N+ M+Y TLQLRSADEG T+F+TCT C
Sbjct: 73 KNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSC 117
>gi|403213967|emb|CCK68468.1| hypothetical protein KNAG_0B00190 [Kazachstania naganishii CBS
8797]
Length = 125
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 34/48 (70%)
Query: 89 QKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
Q K E+ +G ++ KC +C ND M Y TLQLRSADEG T+F+TCT C
Sbjct: 70 QLKKDELGEGATIKEKCPQCGNDEMQYHTLQLRSADEGATVFYTCTSC 117
>gi|365759903|gb|EHN01663.1| Rpa12p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401837644|gb|EJT41547.1| RPA12-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 125
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E+ DG ++ KC +C N+ M+Y TLQLRSADEG T+F+TCT C
Sbjct: 73 KNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSC 117
>gi|440298113|gb|ELP90754.1| DNA-directed RNA polymerase I subunit RPA12, putative [Entamoeba
invadens IP1]
Length = 122
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 26/130 (20%)
Query: 8 NVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF- 66
N+ S FC +CG L + +GD+ C VC L +K N F
Sbjct: 10 NIPSSFCPRCGAYL-ILSIQGDITCEVCG-----------------LVIKG-----NTFK 46
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
E + Y + N+ + K K + G IV KC C N+TM Y + Q+RS DEG
Sbjct: 47 YEPIETTSSNYQV--NSKKHIDNKIKEILPTGAIVYEKCPACGNETMHYHSAQVRSVDEG 104
Query: 127 QTIFFTCTKC 136
QT+++ C C
Sbjct: 105 QTVYYECPNC 114
>gi|256084471|ref|XP_002578452.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|350646255|emb|CCD59089.1| DNA-directed RNA polymerase I, putative [Schistosoma mansoni]
Length = 164
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 32/155 (20%)
Query: 5 GYFNVESEFCSKCGTILPL-FDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFK--- 60
G + FC CGT+LP + + C CKTS D F K
Sbjct: 11 GLERIHRYFCYVCGTLLPHKLEVNDLLVCRKCKTSTCMH----WFSNMDATFNTEAKSSK 66
Query: 61 -GHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIA------------------DGPIV 101
G FN +E ++ + + K+ ++EIA DGP +
Sbjct: 67 IGQFN-----NDEYESTSLFFPSMIRGAKKILRSEIALKEALESQFENSTSQSTFDGPSI 121
Query: 102 ERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++C C ND M+Y TLQ RSADEGQT+ +TCT+C
Sbjct: 122 RKECAYCGNDRMTYVTLQTRSADEGQTVIYTCTQC 156
>gi|17558010|ref|NP_506572.1| Protein RPOA-12 [Caenorhabditis elegans]
gi|3874352|emb|CAB02739.1| Protein RPOA-12 [Caenorhabditis elegans]
Length = 119
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 5 GYFNVESEFCSKCGTILPL-FDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHF 63
+ + + +FC CG IL L V C VC T + +E+
Sbjct: 4 NFLSYDDDFCGYCGAILELPAQAPATVSCKVCSTRWAVKER------------------V 45
Query: 64 NLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSA 123
+ ++ E+I + +E ++ D +V+ C +C + SY+T+Q RSA
Sbjct: 46 DQVVSRVEKIYERTVADTDGIENDESAD-------AVVDHICTKCGHSKASYSTMQTRSA 98
Query: 124 DEGQTIFFTCTKC 136
DEGQT+F+TC KC
Sbjct: 99 DEGQTVFYTCLKC 111
>gi|326432185|gb|EGD77755.1| hypothetical protein PTSG_08844 [Salpingoeca sp. ATCC 50818]
Length = 116
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 27/125 (21%)
Query: 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAV 69
+ FC +CG +LP F + C C GH + + +
Sbjct: 8 DRNFCVRCGALLPTFGDNNTISCRRC-------------------------GH-GVPVTI 41
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIAD-GPIVERKCKRCNNDTMSYATLQLRSADEGQT 128
FE +K + +K E+ D ++ KC +C + MSY T QLRSADEGQT
Sbjct: 42 FENVKVRSSSRPYAFQKPDYNTSKEVEDTAATIDEKCPKCGREEMSYTTAQLRSADEGQT 101
Query: 129 IFFTC 133
IF+ C
Sbjct: 102 IFYRC 106
>gi|67477092|ref|XP_654061.1| DNA-directed RNA polymerase I subunit 13 [Entamoeba histolytica
HM-1:IMSS]
gi|67484028|ref|XP_657234.1| DNA-directed RNA polymerase I subunit 13 [Entamoeba histolytica
HM-1:IMSS]
gi|56471084|gb|EAL48680.1| DNA-directed RNA polymerase I subunit 13, putative [Entamoeba
histolytica HM-1:IMSS]
gi|56474445|gb|EAL51812.1| DNA-directed RNA polymerase I subunit 13, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449708032|gb|EMD47568.1| DNA-directed RNA polymerase I subunit 13, putative [Entamoeba
histolytica KU27]
Length = 122
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 57/131 (43%), Gaps = 30/131 (22%)
Query: 9 VESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLA 68
+ S FC +CGT L L D GD+ C VC HF +
Sbjct: 11 IPSSFCPRCGTYLILSD-SGDIVCDVC--------------------------HFVISAD 43
Query: 69 VFEEIKAEYTIHFNTVEKEKQKD---KTEIADGPIVERKCKRCNNDTMSYATLQLRSADE 125
F+ E T + +K+ D K + G IV KC C N+TM Y + Q+RS DE
Sbjct: 44 QFKYNPIETTSSIFEMSNKKRIDSKIKEILPTGAIVYEKCPNCGNETMHYHSAQVRSVDE 103
Query: 126 GQTIFFTCTKC 136
GQT+++ C C
Sbjct: 104 GQTVYYECPNC 114
>gi|401625027|gb|EJS43053.1| rpa12p [Saccharomyces arboricola H-6]
Length = 125
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E+ DG ++ +C +C N+ M+Y TLQLRSADEG T+F+TCT C
Sbjct: 73 KNELKDGATIKERCPQCGNEEMNYHTLQLRSADEGATVFYTCTSC 117
>gi|255712113|ref|XP_002552339.1| KLTH0C02552p [Lachancea thermotolerans]
gi|238933718|emb|CAR21901.1| KLTH0C02552p [Lachancea thermotolerans CBS 6340]
Length = 125
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 32/45 (71%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E+ +G + KC +C ND M Y TLQLRSADEG T+F+TCT C
Sbjct: 73 KDELEEGATIREKCPQCGNDEMHYHTLQLRSADEGATVFYTCTSC 117
>gi|50543398|ref|XP_499865.1| YALI0A08151p [Yarrowia lipolytica]
gi|49645730|emb|CAG83791.1| YALI0A08151p [Yarrowia lipolytica CLIB122]
Length = 124
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 13 FCSKCGTILPL-FDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC+ CG ++ + D++C C S+ + L + K + F +
Sbjct: 9 FCTDCGNLMDTQLNASKDLECDQCDASFPSANTTNLTV--------VTKSAPDAFPSALR 60
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
++ E + +G I++ KC +C +D M Y TLQLRSADEG T+F+
Sbjct: 61 SKRSVVKTSLAAGEAD---------EGAIIKEKCPQCGHDEMQYHTLQLRSADEGATVFY 111
Query: 132 TCTKC 136
TCTKC
Sbjct: 112 TCTKC 116
>gi|341878102|gb|EGT34037.1| hypothetical protein CAEBREN_13486 [Caenorhabditis brenneri]
Length = 119
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 26/135 (19%)
Query: 3 SEGYFNVESEFCSKCGTILPL-FDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKG 61
S + + + +FC CG IL L V C VC T + +E+
Sbjct: 2 SLNFVSYDDDFCGYCGAILELPAQAPSSVTCKVCATKWAVKER----------------- 44
Query: 62 HFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLR 121
++ E+I + +E ++ D +V+ C +C + SY+T+Q R
Sbjct: 45 -VEQIVSRVEKIYERTVADTDGIENDESAD-------AVVDHICTKCGHSKASYSTMQTR 96
Query: 122 SADEGQTIFFTCTKC 136
SADEGQT+F+TC KC
Sbjct: 97 SADEGQTVFYTCLKC 111
>gi|392576975|gb|EIW70105.1| hypothetical protein TREMEDRAFT_29871 [Tremella mesenterica DSM
1558]
Length = 138
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 13 FCSKCGTILPL-FDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC CGT+L L D + ++ C C + + + + L K F G N F +
Sbjct: 14 FCPACGTLLDLPRDDQDEIACAQCGRTEPASCEWIIFRAYENLPTKTFSGP-NAFPSPLR 72
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
+A + E K +D PI + KC +C + +SY +QLRSADEG TIF+
Sbjct: 73 SKRALVQNTISGQEAAKGRD-------PIAQEKCVKCGHIGLSYKEMQLRSADEGSTIFY 125
Query: 132 TCTKC 136
C KC
Sbjct: 126 KCLKC 130
>gi|45198935|ref|NP_985964.1| AFR417Wp [Ashbya gossypii ATCC 10895]
gi|44984964|gb|AAS53788.1| AFR417Wp [Ashbya gossypii ATCC 10895]
gi|374109194|gb|AEY98100.1| FAFR417Wp [Ashbya gossypii FDAG1]
Length = 125
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 32/45 (71%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E+ DG + KC +C +D M Y TLQLRSADEG T+F+TCT C
Sbjct: 73 KGELEDGATIREKCPQCGHDEMQYHTLQLRSADEGATVFYTCTSC 117
>gi|156843211|ref|XP_001644674.1| hypothetical protein Kpol_1056p17 [Vanderwaltozyma polyspora DSM
70294]
gi|156115322|gb|EDO16816.1| hypothetical protein Kpol_1056p17 [Vanderwaltozyma polyspora DSM
70294]
Length = 125
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 13 FCSKCGTIL--PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC CG +L P D++C C+ +Y P F + + +
Sbjct: 9 FCLDCGDLLDNPSAVTGSDLECSQCQATY-----------PKSKF-----SNLKVVTSTA 52
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
E+ +V K K K E+ DG ++ KC +C N+ M Y TLQLRSADEG T+F
Sbjct: 53 EDAFPSSLRSKKSVVKTSLK-KDELKDGATIKEKCPKCGNEEMQYHTLQLRSADEGATVF 111
Query: 131 FTCTKC 136
+TC C
Sbjct: 112 YTCPAC 117
>gi|448107368|ref|XP_004205344.1| Piso0_003588 [Millerozyma farinosa CBS 7064]
gi|448110344|ref|XP_004201608.1| Piso0_003588 [Millerozyma farinosa CBS 7064]
gi|359382399|emb|CCE81236.1| Piso0_003588 [Millerozyma farinosa CBS 7064]
gi|359383164|emb|CCE80471.1| Piso0_003588 [Millerozyma farinosa CBS 7064]
Length = 123
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ CG +L + C +C SY + L + + +
Sbjct: 9 FCTSCGNLLDKISNSTSLNCKLCNESYPASKFADLKVTT---------------TSSEDA 53
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
+ + + V+ +KD E+ +G ++ KC RC + M Y TLQLRSADEG T+F+T
Sbjct: 54 FPSALKMQRSVVKTSLKKD--ELDEGATIKEKCPRCGCEEMKYHTLQLRSADEGATVFYT 111
Query: 133 CTKC 136
CT C
Sbjct: 112 CTDC 115
>gi|256052454|ref|XP_002569783.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|350646250|emb|CCD59084.1| DNA-directed RNA polymerase I, putative [Schistosoma mansoni]
Length = 236
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 29/128 (22%)
Query: 32 CYVCKTSYGTQEQQPLLLGPDILFLKRFKG----HF--NLFLAVFEEIKAEYTIHFNTVE 85
CYVC GT Q L + D+L ++ K H+ N+ E K+ FN E
Sbjct: 105 CYVC----GTLLQHKLEV-IDLLVCRKCKTSTCMHWFSNMDATFNTEAKSSKIGQFNNDE 159
Query: 86 KEKQKDKTEIA------------------DGPIVERKCKRCNNDTMSYATLQLRSADEGQ 127
K+ ++EIA DGP + ++C C ND M+Y T+Q RSADEGQ
Sbjct: 160 GAKKILRSEIALKEALESQFENSTSQSTFDGPSIRKECAYCGNDRMTYVTVQTRSADEGQ 219
Query: 128 TIFFTCTK 135
T+ +TCT+
Sbjct: 220 TVIYTCTQ 227
>gi|213408913|ref|XP_002175227.1| DNA-directed RNA polymerase I subunit RPA12 [Schizosaccharomyces
japonicus yFS275]
gi|212003274|gb|EEB08934.1| DNA-directed RNA polymerase I subunit RPA12 [Schizosaccharomyces
japonicus yFS275]
Length = 120
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 20/124 (16%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FCS CG +L + + C C++SY +++ L L + N F +
Sbjct: 9 FCSACGNLLESTTAQWTI-CDQCQSSYPSEKFAHLTL--------ETRSGANAFPSALR- 58
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
+ + V+ E +K + + +++ KC +C ND M++ TLQLRSADEG T+F+
Sbjct: 59 ------LKHSIVQTEGKKPE----EAAVIQEKCPKCGNDEMTFHTLQLRSADEGSTVFYE 108
Query: 133 CTKC 136
C +C
Sbjct: 109 CPRC 112
>gi|50425541|ref|XP_461366.1| DEHA2F23540p [Debaryomyces hansenii CBS767]
gi|49657035|emb|CAG89772.1| DEHA2F23540p [Debaryomyces hansenii CBS767]
Length = 123
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 56/132 (42%), Gaps = 33/132 (25%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQE--------QQPLLLGPDILFLKRFKGHFN 64
FC+ CG +L K + C +C SY T Q P L +KR
Sbjct: 9 FCTDCGNLLDTVGSKSTLNCKLCHKSYPTSNFANLKVITQSSEDAFPSALKMKR------ 62
Query: 65 LFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSAD 124
+V K K+ E+ +G ++ KC +C + M Y LQLRSAD
Sbjct: 63 ------------------SVVKTSLKND-ELEEGATIKEKCPKCGTEEMQYHVLQLRSAD 103
Query: 125 EGQTIFFTCTKC 136
EG T+F+TCT C
Sbjct: 104 EGATVFYTCTGC 115
>gi|367007557|ref|XP_003688508.1| hypothetical protein TPHA_0O01050 [Tetrapisispora phaffii CBS 4417]
gi|357526817|emb|CCE66074.1| hypothetical protein TPHA_0O01050 [Tetrapisispora phaffii CBS 4417]
Length = 125
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E+ DG ++ KC +C N+ M Y TLQLRSADEG T+F+TC C
Sbjct: 73 KNELKDGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCPSC 117
>gi|268559674|ref|XP_002637828.1| Hypothetical protein CBG04618 [Caenorhabditis briggsae]
Length = 119
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 26/135 (19%)
Query: 3 SEGYFNVESEFCSKCGTILPLF-DFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKG 61
S + + + +FC CG IL L V C VC T + +E+
Sbjct: 2 SLNFLSYDDDFCGYCGAILELPPQAPSTVTCKVCSTRWNVKER----------------- 44
Query: 62 HFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLR 121
+ ++ E+I + +E ++ D +V+ C +C + SY+T+Q R
Sbjct: 45 -VDQVVSRVEKIYERTVADTDGIENDESAD-------AVVDHICTKCGHTKASYSTMQTR 96
Query: 122 SADEGQTIFFTCTKC 136
SADEGQT+F+TC KC
Sbjct: 97 SADEGQTVFYTCLKC 111
>gi|170574991|ref|XP_001893050.1| hypothetical protein [Brugia malayi]
gi|158601125|gb|EDP38119.1| conserved hypothetical protein [Brugia malayi]
Length = 109
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 31/128 (24%)
Query: 11 SEFCSKCGTILPL-FDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAV 69
SEFCS+CGT+LP+ + C C+T +
Sbjct: 3 SEFCSECGTVLPIPATAPVTITCSYCRTQWH----------------------------- 33
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIA-DGPIVERKCKRCNNDTMSYATLQLRSADEGQT 128
+ I+ + V + + + E A + P+V++ C +C + MSYA Q RSADEGQT
Sbjct: 34 IKPIRNKLVYRSEKVYQNRVLNANEGALENPVVDKICDKCGHGKMSYACRQTRSADEGQT 93
Query: 129 IFFTCTKC 136
+F+ C KC
Sbjct: 94 VFYMCLKC 101
>gi|367015144|ref|XP_003682071.1| hypothetical protein TDEL_0F00490 [Torulaspora delbrueckii]
gi|359749733|emb|CCE92860.1| hypothetical protein TDEL_0F00490 [Torulaspora delbrueckii]
Length = 125
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E+ +G + KC +C N+ M Y TLQLRSADEG T+F+TCT+C
Sbjct: 73 KDELEEGATIREKCPKCGNEEMHYHTLQLRSADEGATVFYTCTQC 117
>gi|308500670|ref|XP_003112520.1| hypothetical protein CRE_30656 [Caenorhabditis remanei]
gi|308267088|gb|EFP11041.1| hypothetical protein CRE_30656 [Caenorhabditis remanei]
Length = 119
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 26/135 (19%)
Query: 3 SEGYFNVESEFCSKCGTILPLFD-FKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKG 61
S + + + +FC CG IL L V C VC T + +E+ L+
Sbjct: 2 SLNFISYDDDFCGCCGAILGLPPRAPATVTCKVCSTQWAVKERVEQLV------------ 49
Query: 62 HFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLR 121
+ V+E A+ + +E ++ D +VE C +C + +Y+T+Q R
Sbjct: 50 --SRIEKVYERTVAD----TDGIENDESAD-------AVVEHICSKCGHTKAAYSTMQTR 96
Query: 122 SADEGQTIFFTCTKC 136
SADEGQT+F+TC KC
Sbjct: 97 SADEGQTVFYTCLKC 111
>gi|167383913|ref|XP_001736733.1| DNA-directed RNA polymerase I subunit RPA12 [Entamoeba dispar
SAW760]
gi|167392221|ref|XP_001740059.1| DNA-directed RNA polymerase I subunit RPA12 [Entamoeba dispar
SAW760]
gi|165895967|gb|EDR23539.1| DNA-directed RNA polymerase I subunit RPA12, putative [Entamoeba
dispar SAW760]
gi|165900771|gb|EDR27011.1| DNA-directed RNA polymerase I subunit RPA12, putative [Entamoeba
dispar SAW760]
Length = 122
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 30/131 (22%)
Query: 9 VESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLA 68
+ S FC +CG L L D GD+ C VC HF +
Sbjct: 11 IPSSFCPRCGAYLILSD-SGDIVCDVC--------------------------HFVISAD 43
Query: 69 VFEEIKAEYTIHFNTVEKEKQKD---KTEIADGPIVERKCKRCNNDTMSYATLQLRSADE 125
F+ E T + +K+ D K + G IV KC C N+TM Y + Q+RS DE
Sbjct: 44 QFKYNPIETTSSIFEMSNKKRIDSKIKEILPTGAIVYEKCPNCGNETMHYHSAQVRSVDE 103
Query: 126 GQTIFFTCTKC 136
GQT+++ C C
Sbjct: 104 GQTVYYECPNC 114
>gi|56753768|gb|AAW25081.1| SJCHGC08580 protein [Schistosoma japonicum]
Length = 116
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 97 DGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
DGP + ++C C ND M Y TLQ RSADEGQT+ +TCT+C
Sbjct: 69 DGPSIRKECAYCGNDRMVYVTLQTRSADEGQTVIYTCTQC 108
>gi|226484704|emb|CAX74261.1| DNA-directed RNA polymerase I subunit A12 [Schistosoma japonicum]
gi|226484706|emb|CAX74262.1| DNA-directed RNA polymerase I subunit A12 [Schistosoma japonicum]
Length = 163
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 70/164 (42%), Gaps = 45/164 (27%)
Query: 2 TSEGYFNVESEFCSKCGTILP-LFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFK 60
T G + FC CGT+LP + + C CKTS R+
Sbjct: 8 TPLGLERIHRYFCYVCGTLLPHTLEVNDLLVCRKCKTST----------------CMRWF 51
Query: 61 GHFNLFLAV------FEEIKAEY---TIHFNTVEKEKQKD-KTEIA-------------- 96
+ N + +I EY ++ F T+ K +K K+EI+
Sbjct: 52 NNMNATFSTEAKCSKISQICDEYASTSLFFPTMIKSAKKILKSEISLKQTLGSHLGNDTR 111
Query: 97 ----DGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
DGP + ++C C ND M Y TLQ RSADEGQT+ +TCT+C
Sbjct: 112 QSKFDGPSIRKECAYCGNDRMVYVTLQTRSADEGQTVIYTCTQC 155
>gi|19075559|ref|NP_588059.1| DNA-directed RNA polymerase complex I subunit Rpa12
[Schizosaccharomyces pombe 972h-]
gi|9297043|sp|O94703.1|RPA12_SCHPO RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=DNA-directed RNA polymerase I 13.1 kDa polypeptide
gi|8886803|gb|AAF80580.1|AF219943_1 RNA polymerase I specific subunit Rpa12 [Schizosaccharomyces pombe]
gi|4049536|emb|CAA22541.1| DNA-directed RNA polymerase complex I subunit Rpa12
[Schizosaccharomyces pombe]
gi|6518899|dbj|BAA87928.1| RPA12 [Schizosaccharomyces pombe]
gi|6519808|dbj|BAA87930.1| SpRPA12 [Schizosaccharomyces pombe]
Length = 119
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 21/124 (16%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FCS+CG +L + C C++ Y +++ L++ K + F +
Sbjct: 9 FCSECGNLLESTTAQW-TTCDQCQSVYPSEQFANLVV--------ETKSSASAFPSA--- 56
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
+K +++I V+ E QK+ + +E KC +C ND M++ TLQLRSADEG T+F+
Sbjct: 57 LKLKHSI----VQVESQKE-----EAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYE 107
Query: 133 CTKC 136
C +C
Sbjct: 108 CPRC 111
>gi|255947378|ref|XP_002564456.1| Pc22g04170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591473|emb|CAP97705.1| Pc22g04170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 124
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 21/125 (16%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
+FC CG +LP+ + + C +C G + +L I F L
Sbjct: 3 QFCEDCGHLLPVSSAE-QIPCELC----GKSTKNTILTDVQISSSTNFPSRLRTKL---- 53
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
+ + QKD + DGPI + +C +C+N ++ QLRSADEG TIF+
Sbjct: 54 ---------LSKTQVVSQKD---LGDGPITDMECPQCSNSKATWTEAQLRSADEGSTIFY 101
Query: 132 TCTKC 136
CTKC
Sbjct: 102 CCTKC 106
>gi|444319462|ref|XP_004180388.1| hypothetical protein TBLA_0D03700 [Tetrapisispora blattae CBS 6284]
gi|387513430|emb|CCH60869.1| hypothetical protein TBLA_0D03700 [Tetrapisispora blattae CBS 6284]
Length = 125
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E+ +G ++ KC +C N+ M Y TLQLRSADEG T+F+TCT C
Sbjct: 73 KDELKEGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTGC 117
>gi|328859381|gb|EGG08490.1| hypothetical protein MELLADRAFT_52162 [Melampsora larici-populina
98AG31]
Length = 145
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKR---------FKGHF 63
FC CG +L + + + C C + Q L+ K+ +
Sbjct: 10 FCLDCGNLLNVPGSEDYLSCDQCGKMELSNRQSKSLIHISTYLSKQKLQEGLEIITRSQS 69
Query: 64 NLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSA 123
N F + + +A H T E D+ + P+++ C +C+N M Y TLQLRSA
Sbjct: 70 NAFPSSLRQKRALVQSHLTTNE-----DQDQGKAAPLMDEICPKCSNPQMKYHTLQLRSA 124
Query: 124 DEGQTIFFTCTKC 136
DEG T+F+ C KC
Sbjct: 125 DEGTTVFYECPKC 137
>gi|328847366|gb|EGF96895.1| hypothetical protein MELLADRAFT_54373 [Melampsora larici-populina
98AG31]
Length = 145
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKR---------FKGHF 63
FC CG +L + + + C C + Q L+ K+ +
Sbjct: 10 FCLDCGNLLNVPGSEDYLSCDQCGKMELSNRQSKSLIHISTYLSKQKIQEGLEIITRSQS 69
Query: 64 NLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSA 123
N F + + +A H T E D+ + P+++ C +C+N M Y TLQLRSA
Sbjct: 70 NAFPSSLRQKRALVQSHLTTNE-----DQDQGKAAPLMDEICPKCSNPQMKYHTLQLRSA 124
Query: 124 DEGQTIFFTCTKC 136
DEG T+F+ C KC
Sbjct: 125 DEGTTVFYECPKC 137
>gi|198414669|ref|XP_002127488.1| PREDICTED: similar to nuclear RNA polymerase I small specific
subunit Rpa12 [Ciona intestinalis]
Length = 118
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 22/130 (16%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
FN +S FC CG+ILPL D C+ Y T N+
Sbjct: 3 FNTDSGFCPHCGSILPLPVNPMDTH-ISCRCGYQTLSAN----------------CNNMI 45
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
++ AE+T + +K K+ + GP +ER C +C ++ M+Y T Q+RSADEG
Sbjct: 46 IS-----SAEFTFNEVKKKKSKKSTAAKGMTGPTIERICVKCGHNQMTYKTQQMRSADEG 100
Query: 127 QTIFFTCTKC 136
+IF+ C KC
Sbjct: 101 MSIFYYCKKC 110
>gi|449450514|ref|XP_004143007.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Cucumis sativus]
gi|449450516|ref|XP_004143008.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Cucumis sativus]
gi|449450518|ref|XP_004143009.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
3 [Cucumis sativus]
gi|449500372|ref|XP_004161079.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Cucumis sativus]
gi|449500375|ref|XP_004161080.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Cucumis sativus]
gi|449500379|ref|XP_004161081.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
3 [Cucumis sativus]
Length = 116
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 25/124 (20%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ CGT+L K V+C CK+ +E ++G +I + EE
Sbjct: 11 FCNLCGTMLSFCSTKY-VECPSCKSRRSAKE----IVGREISYT-----------VTAEE 54
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
I+ + I +++EK + E R+C++C ND + + Q+RSADEGQT F+T
Sbjct: 55 IRKQLGISL--IDEEKMQLAKE-------RRRCEKCGNDEAWFESRQMRSADEGQTTFYT 105
Query: 133 CTKC 136
CTKC
Sbjct: 106 CTKC 109
>gi|71021591|ref|XP_761026.1| hypothetical protein UM04879.1 [Ustilago maydis 521]
gi|46100946|gb|EAK86179.1| hypothetical protein UM04879.1 [Ustilago maydis 521]
Length = 147
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 13 FCSKCGTILPLFDFKGD---VKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAV 69
FC CG++L D GD +KC C + LL +L R L++
Sbjct: 13 FCPNCGSLL---DVPGDEDMIKCAPCGAVQNAKGSADLL--STLLISSRSNNQVYDNLSI 67
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADG-------PIVERKCKRCNNDTMSYATLQLRS 122
++ + + + +++Q T A G ++ KC C ND M++ TLQLRS
Sbjct: 68 V--TRSHPSAFPSALRQKRQLVNTAAALGDDKKPQEATIKEKCPGCGNDEMNFHTLQLRS 125
Query: 123 ADEGQTIFFTCTKC 136
ADEG T+F+ C KC
Sbjct: 126 ADEGTTVFYDCPKC 139
>gi|328769247|gb|EGF79291.1| hypothetical protein BATDEDRAFT_89614 [Batrachochytrium
dendrobatidis JAM81]
Length = 132
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 13 FCSKCGTIL-PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC +CG++L P D + V C+ C T +E + L P + K+ A F
Sbjct: 15 FCKECGSLLDPPNDIEDYVVCHCCATVVDAKEFE---LRPVVTVSKQ---------ATFP 62
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
+ + + + + DG ++ KC +C+ M + T QLRSADEGQT+F+
Sbjct: 63 DKPKPI---VDPSDDNNDRTNAHLRDGATIQEKCPKCDAPEMVFHTAQLRSADEGQTVFY 119
Query: 132 TCTKC 136
+C C
Sbjct: 120 SCVVC 124
>gi|254585037|ref|XP_002498086.1| ZYRO0G01892p [Zygosaccharomyces rouxii]
gi|238940980|emb|CAR29153.1| ZYRO0G01892p [Zygosaccharomyces rouxii]
Length = 125
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ ++ +G ++ KC +C +D M Y TLQLRSADEG T+F+TCT C
Sbjct: 73 RDDLGEGATIKEKCPKCGHDEMHYHTLQLRSADEGATVFYTCTSC 117
>gi|50287137|ref|XP_445998.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525305|emb|CAG58922.1| unnamed protein product [Candida glabrata]
Length = 128
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 97 DGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
DG ++ KC +C +D M Y TLQLRSADEG T+F+TC KC
Sbjct: 81 DGATIKEKCPKCGHDEMRYQTLQLRSADEGATVFYTCIKC 120
>gi|443900020|dbj|GAC77347.1| RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12
[Pseudozyma antarctica T-34]
Length = 129
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 13 FCSKCGTILPLFDFKGD---VKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAV 69
FC CG++L D GD +KC C + L + + H + F +
Sbjct: 13 FCPNCGSLL---DVPGDEDFIKCAPCGAVQNAKVYDNLSI--------VTRSHPSAFPSA 61
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+ + + K K+ T ++ KC C ND M++ TLQLRSADEG T+
Sbjct: 62 LRQKRQLVNTAASIGNDNKPKEAT-------IKEKCPGCGNDEMNFHTLQLRSADEGTTV 114
Query: 130 FFTCTKC 136
F+ C KC
Sbjct: 115 FYDCPKC 121
>gi|331224793|ref|XP_003325068.1| hypothetical protein PGTG_06605 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309304058|gb|EFP80649.1| hypothetical protein PGTG_06605 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 129
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 16/127 (12%)
Query: 13 FCSKCGTILPLFDFKGD---VKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAV 69
FC CG +L L + ++C CK S Q L ++ + + H F +V
Sbjct: 8 FCESCGNLLSLPEHHSPQNLIRCGHCKQS------QKFHLQEELAIVTKSNPH--AFPSV 59
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+ + N+ + + A P+++ C +C + M Y TLQLRSADEG T+
Sbjct: 60 LRQKRTLVQQTANSA-----GHQNDPAAAPLMDESCPKCQHPQMRYHTLQLRSADEGTTV 114
Query: 130 FFTCTKC 136
F+ C C
Sbjct: 115 FYECPNC 121
>gi|125587678|gb|EAZ28342.1| hypothetical protein OsJ_12319 [Oryza sativa Japonica Group]
gi|218193626|gb|EEC76053.1| hypothetical protein OsI_13248 [Oryza sativa Indica Group]
Length = 156
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQP-----------LLLGPDILFL----K 57
FC CGT+L FD C +C + ++ +LL D L
Sbjct: 11 FCGVCGTLLK-FDSVRSASCPLCGFKRKAKGRRLPHLSPCKALGCVLLAADAFVLFFYGA 69
Query: 58 RFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYAT 117
+G + E+I+ E + + + K++ I + V ++C++C N + Y T
Sbjct: 70 DIEGKETRYTVTAEDIRRELKLDPYVILETTLKEEDVIVERATVNKECEKCKNPELQYYT 129
Query: 118 LQLRSADEGQTIFFTCTKC 136
QLRSADEGQT+F+ C C
Sbjct: 130 KQLRSADEGQTVFYKCANC 148
>gi|312281609|dbj|BAJ33670.1| unnamed protein product [Thellungiella halophila]
Length = 119
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 22/124 (17%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ CGT+L + +C +C+T+ +E ++G DI + E+
Sbjct: 11 FCNLCGTML-ILKSATSAECPLCQTTRNAKE----IIGKDIAYT-----------VSAED 54
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
I+ E I ++ EK ++ E+ P +++ C++C + + Y T Q RSADEGQT ++T
Sbjct: 55 IRRELGI---SLFGEKTQEDAEL---PKIKKACEKCQHPELVYTTRQTRSADEGQTTYYT 108
Query: 133 CTKC 136
C C
Sbjct: 109 CPNC 112
>gi|297814818|ref|XP_002875292.1| transcription factor S-II domain-containing protein [Arabidopsis
lyrata subsp. lyrata]
gi|297321130|gb|EFH51551.1| transcription factor S-II domain-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 119
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 22/124 (17%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ CGT+L L K +C +CKT+ +E ++ DI + E+
Sbjct: 11 FCNWCGTMLVLKSTKY-AECPLCKTTRNAKE----IINKDIAYT-----------VTAED 54
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
I+ E I ++ EK +++ E+ P +++ C++C + + Y T Q RSADEGQT ++T
Sbjct: 55 IRRELGI---SLFGEKTQEEAEL---PKIKKACEKCQHPELVYTTRQTRSADEGQTTYYT 108
Query: 133 CTKC 136
C C
Sbjct: 109 CPNC 112
>gi|428169563|gb|EKX38496.1| DNA-directed RNA polymerase I subunit, RPA12 [Guillardia theta
CCMP2712]
Length = 92
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 97 DG-PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
DG VE C +CNN Y+TLQ+RSADEGQTIF+ CTKC
Sbjct: 44 DGRATVEENCPKCNNHEAKYSTLQMRSADEGQTIFYECTKC 84
>gi|118396867|ref|XP_001030770.1| transcription factor S-II (TFIIS) [Tetrahymena thermophila]
gi|89285084|gb|EAR83107.1| transcription factor S-II (TFIIS) [Tetrahymena thermophila SB210]
Length = 136
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
N SEFC +CG ++ + + V+C C+ E + + I FN
Sbjct: 8 LNTASEFCPQCGNMIEMPLYSDKVECSKCEFLCSVLEYKCAPIVSRI--------EFNQK 59
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
E+ +A + +E+E +DK + + +++C C +DT+ + T+Q RSADEG
Sbjct: 60 KQWLEQYRASQNKKIHGIEEEDLEDKHKHKKATL-KQECPDCGHDTLYFWTVQTRSADEG 118
Query: 127 QTIFFTCTKC 136
T+F+ C C
Sbjct: 119 STVFYECQDC 128
>gi|343426304|emb|CBQ69835.1| probable RPA12-13.7 kD subunit of DNA-directed RNA polymerase I
[Sporisorium reilianum SRZ2]
Length = 129
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 13 FCSKCGTILPLFDFKGD---VKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAV 69
FC CG++L D GD +KC C + L + + H + F +
Sbjct: 13 FCPNCGSLL---DVPGDEDFIKCAPCGAVQNAKVYDNLSI--------VTRSHPSAFPSA 61
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+ + + K ++ T ++ KC C ND M++ TLQLRSADEG T+
Sbjct: 62 LRQKRQLVNTAAALGDDNKPQEAT-------IKEKCPGCGNDEMNFHTLQLRSADEGTTV 114
Query: 130 FFTCTKC 136
F+ C KC
Sbjct: 115 FYDCPKC 121
>gi|13324793|gb|AAK18841.1|AC082645_11 putative RNA polymerase I subunit [Oryza sativa Japonica Group]
gi|108710721|gb|ABF98516.1| Transcription factor S-II family protein, expressed [Oryza sativa
Japonica Group]
Length = 126
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CGT+L FD C +C G + + K +G + E+
Sbjct: 11 FCGVCGTLLK-FDSVRSASCPLC----GFKRKA-----------KDIEGKETRYTVTAED 54
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
I+ E + + + K++ I + V ++C++C N + Y T QLRSADEGQT+F+
Sbjct: 55 IRRELKLDPYVILETTLKEEDVIVERATVNKECEKCKNPELQYYTKQLRSADEGQTVFYK 114
Query: 133 CTKC 136
C C
Sbjct: 115 CANC 118
>gi|170115725|ref|XP_001889056.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164636004|gb|EDR00304.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 121
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 13 FCSKCGTILPLF-DFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC+ CGT+L L D + DV C C Q Q+P ++ R H + F +
Sbjct: 8 FCADCGTLLALPKDGETDVVCEQC------QRQEPASSYESVVTTTR--SHPDAFPSALR 59
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
+ + T H Q D+ G +V KC C + +QLRSADEG TIF+
Sbjct: 60 QKRKTQTKHH------AQGDQ-----GTLVAEKCPSCGHLEAYSKEMQLRSADEGSTIFY 108
Query: 132 TCTKC 136
TC C
Sbjct: 109 TCVSC 113
>gi|66816475|ref|XP_642247.1| RNA polymerase I subunit [Dictyostelium discoideum AX4]
gi|60470324|gb|EAL68304.1| RNA polymerase I subunit [Dictyostelium discoideum AX4]
Length = 324
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 55 FLKRFKGHFNLFLAVFEEIKAEY--------TIHFNTVEKEKQKDKTEIADGPIVERKCK 106
+ K F H L F + KA+ + FN K K++D E G I++ KC
Sbjct: 228 YPKNFSQHITCSLCTFSKSKADLLNKKIVTKSSLFNKSIKNKEEDNEE-DRGAIIDEKCP 286
Query: 107 RCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C + M + T Q RSADEGQTIF+ C KC
Sbjct: 287 ECGHGKMYFKTAQTRSADEGQTIFYDCVKC 316
>gi|403330665|gb|EJY64226.1| DNA-directed RNA polymerase subunit [Oxytricha trifallax]
Length = 81
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P V+ C C++D M Y T+QLRSADEGQT+FF C KC
Sbjct: 36 PTVQEDCPNCDSDLMYYHTMQLRSADEGQTVFFECVKC 73
>gi|388857135|emb|CCF49350.1| probable RPA12-13.7 kD subunit of DNA-directed RNA polymerase I
[Ustilago hordei]
Length = 129
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 13 FCSKCGTILPLFDFKGD---VKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAV 69
FC CG++L D GD ++C C + L + + H + F +
Sbjct: 13 FCPNCGSLL---DVPGDEDLIRCAPCGAVQNAKVYDNLSI--------VTRSHPSAFPSA 61
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+ + + K ++ T ++ KC C ND M++ TLQLRSADEG T+
Sbjct: 62 LRQKRQLVNTAAALGDDNKPQEAT-------IKEKCPGCGNDEMNFHTLQLRSADEGTTV 114
Query: 130 FFTCTKC 136
F+ C KC
Sbjct: 115 FYDCPKC 121
>gi|300175950|emb|CBK21946.2| unnamed protein product [Blastocystis hominis]
Length = 122
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 36/132 (27%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC CG+IL L + G ++C +C H+ ++
Sbjct: 19 EFCKVCGSILDLPE-SGTIECGIC--------------------------HWKCQMSDLS 51
Query: 72 EIKAEYTIHFNTVEKE----KQKDKTEIADGP---IVERKCKRCNNDTMSYATLQLRSAD 124
+ H V + +Q++K ++ GP +V+ +C RC N MS+ TLQLRS D
Sbjct: 52 NTTIITSSHPKPVPQWVHELQQQEKIQV--GPTRALVDEECPRCKNPQMSFYTLQLRSVD 109
Query: 125 EGQTIFFTCTKC 136
EG T+F+ C KC
Sbjct: 110 EGSTVFYKCLKC 121
>gi|452822187|gb|EME29209.1| DNA-directed RNA polymerase I subunit A12 [Galdieria sulphuraria]
Length = 156
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 62/141 (43%), Gaps = 28/141 (19%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVK-CYVCKT---SYGTQ-EQQPLLLGPDILF 55
M + N + FC+ CG +L L G V C VCK SY E+Q L P
Sbjct: 31 MNESYHENQRNSFCNYCGGLL-LVSNDGKVGFCRVCKKTSESYSKGGERQFRPLKPSE-- 87
Query: 56 LKRFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSY 115
FL +K E+E Q + V+ C +C +DT+ +
Sbjct: 88 ----------FLRTLSAMK----------EEENQTVTASENNQATVKETCPQCGHDTLLF 127
Query: 116 ATLQLRSADEGQTIFFTCTKC 136
T QLRSADEGQTIF+TC KC
Sbjct: 128 RTAQLRSADEGQTIFYTCPKC 148
>gi|405123241|gb|AFR98006.1| DNA-directed RNA polymerase I kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 133
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 26/130 (20%)
Query: 13 FCSKCGTILPLF-DFKGDVKCYVC-----KTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
FC CGT+L L D + ++ C C +SY + L K + N F
Sbjct: 16 FCPACGTLLDLPKDDQNEIACSQCGRLEPASSY------------ENLPTKTYSSP-NAF 62
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
+ +A + E K +D P+ + KC++C + +SY +QLRSADEG
Sbjct: 63 PSSLRSKRALVQNKLDAGEAAKGRD-------PVAQEKCQKCGHIGLSYKEMQLRSADEG 115
Query: 127 QTIFFTCTKC 136
TIF+ C C
Sbjct: 116 STIFYKCLNC 125
>gi|145344487|ref|XP_001416763.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576989|gb|ABO95056.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 125
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 23/129 (17%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQE-----QQPLLLGPDILFLKRFKGHFNLFL 67
FC +CG L L DV+C C + ++ ++ L G + FK H +
Sbjct: 7 FCERCGARLRLTTRAPDVRCDACGRARALEDAFGDGERELTAG-----AREFKFHHGV-- 59
Query: 68 AVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQ 127
E + E+ ++ T V+ KC +C + +++ T+QLRSADEGQ
Sbjct: 60 ----EARHPNGTRVGATEEVTRERAT-------VDEKCPKCKHKGLNFYTMQLRSADEGQ 108
Query: 128 TIFFTCTKC 136
T+F+ C KC
Sbjct: 109 TVFYECPKC 117
>gi|308802133|ref|XP_003078380.1| RNA polymerase III subunit C11 (ISS) [Ostreococcus tauri]
gi|116056832|emb|CAL53121.1| RNA polymerase III subunit C11 (ISS) [Ostreococcus tauri]
Length = 136
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 11 SEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
S FC++CG L L V C C ++ +E D+ + F
Sbjct: 6 SGFCARCGARLRLSTQSDVVTCGGCGKTHALEEGARR----DVTSTRPFGAGERELSCGA 61
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIA-DGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+E K + + K E+ + V+ KC +C + +++ T+QLRSADEGQT+
Sbjct: 62 KEFKFHHGVEARYPNGTKVGAGEEVTRERATVDEKCPKCKHKGLNFYTMQLRSADEGQTV 121
Query: 130 FFTCTKC 136
F+ C KC
Sbjct: 122 FYECPKC 128
>gi|325192573|emb|CCA27002.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 123
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 23/132 (17%)
Query: 5 GYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFN 64
G + FC CG+I L + ++ C C + F
Sbjct: 7 GRHDNGPSFCPHCGSIFTLPEI-NNITCSACA----------------------YHCKFE 43
Query: 65 LFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSAD 124
++ ++E +EKE++ + VE C +C N M Y TLQ+RSAD
Sbjct: 44 DLPSLVSITQSEQKPVPEWLEKEQKIKNVQGPARATVEETCPKCGNTEMEYYTLQMRSAD 103
Query: 125 EGQTIFFTCTKC 136
EGQT+F+ C KC
Sbjct: 104 EGQTVFYECKKC 115
>gi|384499138|gb|EIE89629.1| hypothetical protein RO3G_14340 [Rhizopus delemar RA 99-880]
Length = 126
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 26/128 (20%)
Query: 13 FCSKCGTILPLFDFKGDVK-CYVCKTSY---GTQEQQPLLLGPDILFLKRFKGHFNLFLA 68
FC +CG +L + D+ C C ++ G + + + D F K
Sbjct: 13 FCPECGNLLDMAGGDDDILLCNQCSCAFRTAGIETTEVITTSSDRSFQSSLKAKR----- 67
Query: 69 VFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQT 128
H KE Q+ + I++ KC C + M Y T+QLRSADEGQT
Sbjct: 68 -----------HLVQQSKEAQQARA------IIKEKCPSCGHPEMEYHTMQLRSADEGQT 110
Query: 129 IFFTCTKC 136
+F+ C KC
Sbjct: 111 VFYNCKKC 118
>gi|357118102|ref|XP_003560798.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Brachypodium distachyon]
Length = 125
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FCS CGT+L FD C +C G + + K +G + E+
Sbjct: 11 FCSVCGTLLD-FDSVRSASCPLC----GFKRKA-----------KAIEGKETRYAVTDED 54
Query: 73 IKAEYTIH-FNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
I+ E I F T+E + D I +V+ C +C + + Y T QLR+ADEGQT+F+
Sbjct: 55 IRRELKIEPFVTLESAPKMDV--IVQRVVVDETCPKCGHPQLEYHTKQLRAADEGQTVFY 112
Query: 132 TCTKC 136
C +C
Sbjct: 113 ECPEC 117
>gi|348685495|gb|EGZ25310.1| hypothetical protein PHYSODRAFT_487107 [Phytophthora sojae]
Length = 125
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 53/127 (41%), Gaps = 29/127 (22%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CGTIL D + C C+ Q+ P + + R + E+
Sbjct: 17 FCPHCGTILDHPD-TNSIVCSACEYRCRYQDL------PSLTVVTRSEDKPAPKWLDAEK 69
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGP---IVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+ +E T GP VE C +C N M Y TLQLRSADEGQT+
Sbjct: 70 VMSEVT-------------------GPARATVEEPCPKCGNPEMDYYTLQLRSADEGQTV 110
Query: 130 FFTCTKC 136
F+ C KC
Sbjct: 111 FYECKKC 117
>gi|301111244|ref|XP_002904701.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262095031|gb|EEY53083.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 125
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 53/127 (41%), Gaps = 29/127 (22%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CGTIL D + C C+ Q+ P + + R + E+
Sbjct: 17 FCPHCGTILDHPD-TNSIVCSACEYRCRYQDL------PSLTVVTRSEDKPTPKWLDAEK 69
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGP---IVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+ +E T GP VE C +C N M Y TLQLRSADEGQT+
Sbjct: 70 VMSEVT-------------------GPARATVEETCPKCGNPEMDYYTLQLRSADEGQTV 110
Query: 130 FFTCTKC 136
F+ C KC
Sbjct: 111 FYECKKC 117
>gi|258577433|ref|XP_002542898.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903164|gb|EEP77565.1| predicted protein [Uncinocarpus reesii 1704]
Length = 323
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 95 IADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ GP +E C +C + ++YA +QLRSADEG TIF+TC KC
Sbjct: 254 VGSGPQIEMDCVKCPSREVTYAQVQLRSADEGSTIFYTCMKC 295
>gi|330803649|ref|XP_003289816.1| hypothetical protein DICPUDRAFT_36381 [Dictyostelium purpureum]
gi|325080075|gb|EGC33646.1| hypothetical protein DICPUDRAFT_36381 [Dictyostelium purpureum]
Length = 136
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 87 EKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E +KD +E G I++ KC C + M + T Q RSADEGQTIF+ C KC
Sbjct: 79 EAKKDDSEEDRGAIIDEKCPNCGHGKMYFKTAQTRSADEGQTIFYDCVKC 128
>gi|326511037|dbj|BAJ91866.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 125
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 19/125 (15%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CGT+L F+ C +C G + + K +G + E+
Sbjct: 11 FCGVCGTLLD-FNSHRYASCPLC----GFKRKA-----------KDIEGKETRYAVTAED 54
Query: 73 IKAEYTIH-FNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
I+ E I F +E D + + ER C +CN+ + Y T QLRSADEGQTIF+
Sbjct: 55 IRRELKIKPFVVLESAPNLDI--VVQRSLTERACPKCNHHELEYYTKQLRSADEGQTIFY 112
Query: 132 TCTKC 136
C +C
Sbjct: 113 ECPEC 117
>gi|297601563|ref|NP_001051059.2| Os03g0711700 [Oryza sativa Japonica Group]
gi|255674831|dbj|BAF12973.2| Os03g0711700 [Oryza sativa Japonica Group]
Length = 154
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVC------------KTSYG-TQEQQPLLLGPDILFLKRF 59
FC CGT+L FD C +C +T Y T E +P+ L
Sbjct: 11 FCGVCGTLLK-FDSVRSASCPLCGFKRKAKDIEGKETRYTVTAEVRPIALPSSSRETLGS 69
Query: 60 KGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQ 119
++I+ E + + + K++ I + V ++C++C N + Y T Q
Sbjct: 70 SVSVATDFVSPQDIRRELKLDPYVILETTLKEEDVIVERATVNKECEKCKNPELQYYTKQ 129
Query: 120 LRSADEGQTIFFTCTKC 136
LRSADEGQT+F+ C C
Sbjct: 130 LRSADEGQTVFYKCANC 146
>gi|168480799|gb|ACA24493.1| TFIIS domain-containing protein [Cucumis sativus]
Length = 116
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 31/127 (24%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ GT+L K V+C CK+ +E ++G +I + EE
Sbjct: 11 FCNLGGTMLSFCSTK-YVECPSCKSRRSAKE----IVGREISYT-----------VTAEE 54
Query: 73 IKAEYTIHF---NTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
IK + I N ++ K++ R+C++C ND + + Q+RSADEGQT
Sbjct: 55 IKKQLGISLIDENNMQLAKER------------RRCEKCGNDEAWFESRQMRSADEGQTT 102
Query: 130 FFTCTKC 136
F+TC+KC
Sbjct: 103 FYTCSKC 109
>gi|302764066|ref|XP_002965454.1| hypothetical protein SELMODRAFT_83849 [Selaginella moellendorffii]
gi|300166268|gb|EFJ32874.1| hypothetical protein SELMODRAFT_83849 [Selaginella moellendorffii]
Length = 115
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 25/127 (19%)
Query: 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAV 69
+ +FC+ CGT+L +++ C +CK + + R HF L ++
Sbjct: 6 DCDFCALCGTML-VYESATTASCALCKAQRNAEG-----------MIHRSIAHFLLINSL 53
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
F + Y+ ++ +D C +C N + Y T QLRSADEGQT+
Sbjct: 54 FGVLVYIYSTQWSRRRCGVNED-------------CPKCKNPQLEYYTRQLRSADEGQTV 100
Query: 130 FFTCTKC 136
F+ C KC
Sbjct: 101 FYECPKC 107
>gi|302142695|emb|CBI19898.3| unnamed protein product [Vitis vinifera]
Length = 126
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 59/132 (44%), Gaps = 32/132 (24%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ CGT+L + K +C +CK+ +K G + E+
Sbjct: 11 FCNLCGTMLCMSSTKY-AECPLCKSRRK---------------VKDISGREIRYTVSAED 54
Query: 73 IKAEYTIH-------FNTVEKEKQKDKTEIADGPIVERKCKRCNNDT-MSYATLQLRSAD 124
I+ E I T E E Q KT+ +C RC DT + Y T QLRSAD
Sbjct: 55 IRRELNIEPFVKLDGIITEESEAQNAKTK--------GRCDRCEEDTWLYYYTRQLRSAD 106
Query: 125 EGQTIFFTCTKC 136
EGQTIF+ CTKC
Sbjct: 107 EGQTIFYECTKC 118
>gi|402584912|gb|EJW78853.1| hypothetical protein WUBG_10238, partial [Wuchereria bancrofti]
Length = 65
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 97 DGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ P+V++ C +C + MSYA Q RSADEGQT+F+ C KC
Sbjct: 18 ENPVVDKICDKCGHGKMSYACRQTRSADEGQTVFYMCLKC 57
>gi|242038379|ref|XP_002466584.1| hypothetical protein SORBIDRAFT_01g010360 [Sorghum bicolor]
gi|241920438|gb|EER93582.1| hypothetical protein SORBIDRAFT_01g010360 [Sorghum bicolor]
Length = 115
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 26/124 (20%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CGT+L FD C +C G +E + G I + + + EE
Sbjct: 11 FCGVCGTLLT-FDSVHSASCPLCGFKRGAKEME----GKQIQYTMTAEDIRRGLKTLTEE 65
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
I + P + CK C++ Y +LQ+RSADEG+TIF+T
Sbjct: 66 I---------------------VVQRPKTNKTCKFCDHPEAEYYSLQMRSADEGETIFYT 104
Query: 133 CTKC 136
CTKC
Sbjct: 105 CTKC 108
>gi|393910153|gb|EFO18071.2| hypothetical protein LOAG_10428 [Loa loa]
Length = 56
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 97 DGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ P+V++ C +C + MSYA Q RSADEGQT+F+ C KC
Sbjct: 9 ENPVVDKICDKCGHGKMSYACRQTRSADEGQTVFYMCLKC 48
>gi|328872688|gb|EGG21055.1| RNA polymerase I subunit [Dictyostelium fasciculatum]
Length = 264
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 82 NTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
N +K K D+ E G +++ KC C + M + T Q RSADEGQTIF+ C KC
Sbjct: 205 NLFKKPKALDEEEADRGAVIDEKCPECGHGKMYFKTAQTRSADEGQTIFYDCMKC 259
>gi|83768952|dbj|BAE59089.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391865717|gb|EIT74996.1| hypothetical protein Ao3042_09099 [Aspergillus oryzae 3.042]
Length = 122
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ E+ GP +E C +C + ++Y+ +QLRSADEG TIF+ C KC
Sbjct: 75 RDELGPGPTIEVDCVKCPSKDVTYSQVQLRSADEGSTIFYNCLKC 119
>gi|384485432|gb|EIE77612.1| hypothetical protein RO3G_02316 [Rhizopus delemar RA 99-880]
Length = 104
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 80 HFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
H KE Q+ + I++ KC C + M Y T+QLRSADEGQT+F+ C KC
Sbjct: 46 HLVQQSKEAQQARA------IIKEKCPSCGHPEMEYHTMQLRSADEGQTVFYNCKKC 96
>gi|294889433|ref|XP_002772810.1| translation elongation factor g, putative [Perkinsus marinus ATCC
50983]
gi|239877360|gb|EER04626.1| translation elongation factor g, putative [Perkinsus marinus ATCC
50983]
Length = 838
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 23/138 (16%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQ---QPLLLGPDILFLK 57
++ E YF E+ FC CG+ +D + + VC +++ PL+ +L
Sbjct: 58 VSKEEYFRYENMFCGYCGS---FYDQRQKGQYSVCSRCGAKRDRFATGPLMESHAVLDY- 113
Query: 58 RFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYAT 117
G +++ N +++E+ K+K + +V+ +C +C N M++ T
Sbjct: 114 ---GEMKVWMK-------------NIIDEEEGKEKKDDKKMALVDEECPKCKNPRMAFWT 157
Query: 118 LQLRSADEGQTIFFTCTK 135
QLRSADEGQT+F+ C K
Sbjct: 158 QQLRSADEGQTVFYECQK 175
>gi|384253550|gb|EIE27025.1| hypothetical protein COCSUDRAFT_83584 [Coccomyxa subellipsoidea
C-169]
Length = 120
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILF---LKRFKGHFNLF 66
E FC G++L L G KC + G Q + L G + ++ ++ FNL
Sbjct: 6 EWMFCPLTGSLLTLDATSGVAKCPIS----GWQRKLEDLDGSVTVSKSNIQDYRRRFNLE 61
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
V E+ K + + +Q+ +T V+ C +C N M Y T QLRSADEG
Sbjct: 62 PLVKEKKKEDEFL--------EQQGRTRAT----VDDDCPKCGNHGMEYYTRQLRSADEG 109
Query: 127 QTIFFTCTKC 136
QTIF+ C C
Sbjct: 110 QTIFYECPNC 119
>gi|294951345|ref|XP_002786934.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239901524|gb|EER18730.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 184
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 23/139 (16%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQ---QPLLLGPDILFLK 57
++ E YF E+ FC CG+ +D + + VC +++ PL+ +L
Sbjct: 58 VSKEEYFKYENMFCGYCGS---FYDQRQKGQYSVCSRCGAKRDRFATGPLMESHAVLDY- 113
Query: 58 RFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYAT 117
G +++ N +++E+ K+K + +V+ +C +C N M++ T
Sbjct: 114 ---GEMKVWMK-------------NIIDEEEGKEKKDDKKMALVDEECPKCKNPRMAFWT 157
Query: 118 LQLRSADEGQTIFFTCTKC 136
QLRSADEGQT+F+ C KC
Sbjct: 158 QQLRSADEGQTVFYECQKC 176
>gi|294948622|ref|XP_002785812.1| translation elongation factor G, putative [Perkinsus marinus ATCC
50983]
gi|239899920|gb|EER17608.1| translation elongation factor G, putative [Perkinsus marinus ATCC
50983]
Length = 899
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 23/138 (16%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQ---QPLLLGPDILFLK 57
++ E YF E+ FC CG+ +D + + VC +++ PL+ +L
Sbjct: 58 VSKEEYFRYENMFCGYCGS---FYDQRQRGQYSVCSRCGAKRDRFATGPLMESHAVLDY- 113
Query: 58 RFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYAT 117
G +++ N +++E+ K+K + +V+ +C +C N M++ T
Sbjct: 114 ---GEMKVWMK-------------NIIDEEEGKEKKDDKKMALVDEECPKCKNPRMAFWT 157
Query: 118 LQLRSADEGQTIFFTCTK 135
QLRSADEGQT+F+ C K
Sbjct: 158 QQLRSADEGQTVFYECQK 175
>gi|303271149|ref|XP_003054936.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462910|gb|EEH60188.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 64
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K I + +V+ KC +C+N +++ T+QLRS DEGQT+F+ C KC
Sbjct: 12 KDVIRERAVVDEKCPKCDNKGLNFYTMQLRSVDEGQTVFYECPKC 56
>gi|294951337|ref|XP_002786930.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239901520|gb|EER18726.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 184
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 23/139 (16%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQ---QPLLLGPDILFLK 57
++ E YF E+ FC CG+ +D + + VC +++ PL+ +L
Sbjct: 58 VSKEEYFKYENMFCGYCGS---FYDQRQRGQYSVCSRCGAKRDRFATGPLMESHAVLDY- 113
Query: 58 RFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYAT 117
G +++ N +++E+ K+K + +V+ +C +C N M++ T
Sbjct: 114 ---GEMKVWMK-------------NIIDEEEGKEKKDDKKMALVDEECPKCKNPRMAFWT 157
Query: 118 LQLRSADEGQTIFFTCTKC 136
QLRSADEGQT+F+ C KC
Sbjct: 158 QQLRSADEGQTVFYECQKC 176
>gi|294929692|ref|XP_002779329.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
gi|239888392|gb|EER11124.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
Length = 408
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 23/139 (16%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQ---QPLLLGPDILFLK 57
++ E YF E+ FC CG+ +D + + VC +++ PL+ +L
Sbjct: 282 VSKEEYFKYENMFCGYCGS---FYDQRQRGQYSVCSRCGAKRDRFVTGPLMESHAVLDY- 337
Query: 58 RFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYAT 117
G +++ N +++E+ K+K + +V+ +C +C N M++ T
Sbjct: 338 ---GEMKVWMK-------------NIIDEEEGKEKKDDKKMALVDEECPKCKNPRMAFWT 381
Query: 118 LQLRSADEGQTIFFTCTKC 136
QLRSADEGQT+F+ C KC
Sbjct: 382 QQLRSADEGQTVFYECQKC 400
>gi|440793835|gb|ELR15006.1| transcription factor SII (TFIIS) domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 145
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 28/128 (21%)
Query: 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAV 69
++ FC CG +LPL + C +C FN+
Sbjct: 37 KTNFCDNCGCLLPL-TADSQINCKMC--------------------------GFNVNADE 69
Query: 70 FEE-IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQT 128
EE + +++ ++ +K++ + D I++ KC +C + M + T+QLRS DEG T
Sbjct: 70 LEEHVIVTKAKPKSSIRQKGKKEEDKSNDRAIIDEKCPKCGHGKMYFYTMQLRSVDEGST 129
Query: 129 IFFTCTKC 136
+F+ C KC
Sbjct: 130 VFYECVKC 137
>gi|307110179|gb|EFN58415.1| hypothetical protein CHLNCDRAFT_140360 [Chlorella variabilis]
Length = 146
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTK 135
VE C RC N + Y T+QLRSADEGQT+F+ C K
Sbjct: 101 VEEPCPRCGNPILEYYTMQLRSADEGQTVFYECPK 135
>gi|302805572|ref|XP_002984537.1| hypothetical protein SELMODRAFT_120289 [Selaginella moellendorffii]
gi|300147925|gb|EFJ14587.1| hypothetical protein SELMODRAFT_120289 [Selaginella moellendorffii]
Length = 115
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 25/127 (19%)
Query: 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAV 69
+ +FC+ CGT+L +++ C +CK + + R H L ++
Sbjct: 6 DCDFCALCGTML-VYESATTASCALCKAQRNAEG-----------MIHRSIAHVLLINSL 53
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
F + Y+ ++ +D C +C N + Y T QLRSADEGQT+
Sbjct: 54 FGVLVYIYSTQWSRRRCGVNED-------------CPKCKNPQLEYYTRQLRSADEGQTV 100
Query: 130 FFTCTKC 136
F+ C KC
Sbjct: 101 FYECPKC 107
>gi|299755285|ref|XP_002912086.1| DNA-directed RNA polymerase I kDa polypeptide [Coprinopsis cinerea
okayama7#130]
gi|298411155|gb|EFI28592.1| DNA-directed RNA polymerase I kDa polypeptide [Coprinopsis cinerea
okayama7#130]
Length = 124
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 13 FCSKCGTILPLF-DFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC CGT+L L D + V C C ++P +I+ R H + F + +
Sbjct: 11 FCPNCGTLLDLPKDGEAIVTCEQC------HHEEPASSYENIVITTR--SHPDAFPSPLQ 62
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
+ + T ++ Q D+ G +V KC C + +QLRSADEG TIF+
Sbjct: 63 QKRKTLT------KRHDQGDQ-----GTLVAEKCPSCGHMEAYSKEMQLRSADEGSTIFY 111
Query: 132 TCTKC 136
TC C
Sbjct: 112 TCASC 116
>gi|159116058|ref|XP_001708251.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia lamblia
ATCC 50803]
gi|157436361|gb|EDO80577.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia lamblia
ATCC 50803]
Length = 103
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P+++ C +C++ YA++Q+RSADEGQTIFF C C
Sbjct: 58 PVIDETCPKCHHGQAYYASMQMRSADEGQTIFFECCSC 95
>gi|238491206|ref|XP_002376840.1| DNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
gi|220697253|gb|EED53594.1| DNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
Length = 131
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ E+ GP +E C +C + ++Y+ +QLRSA+EG TIF+ C KC
Sbjct: 75 RDELGPGPTIEVDCVKCPSKDVTYSQVQLRSANEGSTIFYNCLKC 119
>gi|358055050|dbj|GAA98819.1| hypothetical protein E5Q_05507 [Mixia osmundae IAM 14324]
Length = 127
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 30/37 (81%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+++ +C +C++ M ++TLQ+RSADEG T+F+TC +C
Sbjct: 83 LIDERCPKCDSKQMEFSTLQMRSADEGSTVFYTCPRC 119
>gi|340507633|gb|EGR33565.1| RNA polymerase i subunit, putative [Ichthyophthirius multifiliis]
Length = 340
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
FN SEFC +CG ++ + + V+C C+ E + P I+ +F H +
Sbjct: 218 FNTASEFCPQCGYLIEMPIYSDKVECNKCEFICSVLEYK----CPPIISKIQF-SHKKPW 272
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
L +Y V+ ++Q + A ++ +C +C TM + T+Q RSADEG
Sbjct: 273 LE-------QYNAKIRGVDDKEQNFNQKKAK---IKSECPQCGYHTMYFWTVQTRSADEG 322
Query: 127 QTIFFTCTKC 136
T+F+ C C
Sbjct: 323 STVFYECADC 332
>gi|253744550|gb|EET00750.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia
intestinalis ATCC 50581]
Length = 103
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
PI++ +C +C++ Y ++Q+RSADEGQTIFF C C
Sbjct: 58 PIIDEECPKCHHGQAYYTSMQMRSADEGQTIFFECCNC 95
>gi|58265576|ref|XP_569944.1| DNA-directed RNA polymerase i 13.7 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134109635|ref|XP_776932.1| hypothetical protein CNBC4220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|321253692|ref|XP_003192819.1| DNA-directed RNA polymerase i 13.7 kDa polypeptide [Cryptococcus
gattii WM276]
gi|50259612|gb|EAL22285.1| hypothetical protein CNBC4220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226176|gb|AAW42637.1| DNA-directed RNA polymerase i 13.7 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
gi|317459288|gb|ADV21032.1| DNA-directed RNA polymerase i 13.7 kDa polypeptide, putative
[Cryptococcus gattii WM276]
Length = 132
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 27/130 (20%)
Query: 13 FCSKCGTILPLF-DFKGDVKCYVC-----KTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
FC CGT+L L D + ++ C C +SY + L K + N F
Sbjct: 16 FCPACGTLLDLPKDDQNEIACSQCGRLEPASSY------------ENLPTKTYSSP-NAF 62
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
+ +A + E K +D + KC++C + +SY +QLRSADEG
Sbjct: 63 PSSLRSKRALVQNKLDAGEAAKGRDP--------AQEKCQKCGHIGLSYKEMQLRSADEG 114
Query: 127 QTIFFTCTKC 136
TIF+ C C
Sbjct: 115 STIFYKCLNC 124
>gi|345004646|ref|YP_004807499.1| transcription termination factor Tfs [halophilic archaeon DL31]
gi|344320272|gb|AEN05126.1| transcription termination factor Tfs [halophilic archaeon DL31]
Length = 105
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 56 LKRFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIAD------GPIVERKCKRCN 109
+ + +G + + E + + T + +++ D +++D GP E +C C
Sbjct: 10 MMKAEGDEWVCTCGYTETRGDDESGMTTQQNQEKSDVVDMSDVGEEAMGPTTETRCPECG 69
Query: 110 NDTMSYATLQLRSADEGQTIFFTCTKC 136
+D S+ Q+RSADE +T FFTCT+C
Sbjct: 70 HDRASFQMQQIRSADESETRFFTCTEC 96
>gi|452838895|gb|EME40835.1| hypothetical protein DOTSEDRAFT_137176 [Dothistroma septosporum
NZE10]
Length = 122
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
I++ C+ C ND + + T+QLRSADEG T+F+TC KC
Sbjct: 78 IIKHTCENCGNDEVKFYTMQLRSADEGSTVFYTCLKC 114
>gi|18404735|ref|NP_566786.1| TFIIB zinc-binding protein [Arabidopsis thaliana]
gi|9279599|dbj|BAB01057.1| unnamed protein product [Arabidopsis thaliana]
gi|21536551|gb|AAM60883.1| putative RNA polymerase I subunit [Arabidopsis thaliana]
gi|88011125|gb|ABD38906.1| At3g25940 [Arabidopsis thaliana]
gi|332643572|gb|AEE77093.1| TFIIB zinc-binding protein [Arabidopsis thaliana]
Length = 119
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 22/124 (17%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ CGT+L L K +C CKT+ ++ ++ +I + E+
Sbjct: 11 FCNLCGTMLVLKSTKY-AECPHCKTTRNAKD----IIDKEIAYT-----------VSAED 54
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
I+ E I ++ EK + + E+ P +++ C++C + + Y T Q RSADEGQT ++T
Sbjct: 55 IRRELGI---SLFGEKTQAEAEL---PKIKKACEKCQHPELVYTTRQTRSADEGQTTYYT 108
Query: 133 CTKC 136
C C
Sbjct: 109 CPNC 112
>gi|302850349|ref|XP_002956702.1| hypothetical protein VOLCADRAFT_107352 [Volvox carteri f.
nagariensis]
gi|300258063|gb|EFJ42304.1| hypothetical protein VOLCADRAFT_107352 [Volvox carteri f.
nagariensis]
Length = 124
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
V+ C +C + M Y T+QLRSADEGQT+F+ C KC
Sbjct: 81 VDEPCPKCQHRPMEYYTMQLRSADEGQTVFYECRKC 116
>gi|303390386|ref|XP_003073424.1| DNA-directed RNA polymerase I subunit M [Encephalitozoon
intestinalis ATCC 50506]
gi|303302570|gb|ADM12064.1| DNA-directed RNA polymerase I subunit M [Encephalitozoon
intestinalis ATCC 50506]
Length = 99
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 32/117 (27%)
Query: 17 CGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEEIKAE 76
CGT++ + V+C CK + +P VF EI+ +
Sbjct: 5 CGTLIYIKSNSSKVECLRCKRENSIEMIKP----------------------VFTEIEVQ 42
Query: 77 YTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
H +E +G ++ +C C + M Y T+QLRS DEGQT+F++C
Sbjct: 43 RDSHIEVIE----------VEGAKIKHRCPGCGAEEMMYNTVQLRSTDEGQTVFYSC 89
>gi|393235824|gb|EJD43376.1| hypothetical protein AURDEDRAFT_114723 [Auricularia delicata
TFB-10046 SS5]
Length = 126
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 32/130 (24%)
Query: 13 FCSKCGTILPLFDFKGD-VKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC CGT+L L D VKC C GH + ++
Sbjct: 15 FCPHCGTLLDLPKMNEDTVKCDQC-------------------------GHVEPS-SSYD 48
Query: 72 EIKAEYTIH---FNTVEKEKQKDKTEIADGPI--VERKCKRCNNDTMSYATLQLRSADEG 126
IK H F +V ++K+K +T+ + + V+ KC C ++ LQLRSADEG
Sbjct: 49 NIKIVTRSHPDAFPSVLRQKRKTQTQTSGDALLRVKEKCPACGHNEALAKELQLRSADEG 108
Query: 127 QTIFFTCTKC 136
TI +TC C
Sbjct: 109 STILYTCADC 118
>gi|452978860|gb|EME78623.1| hypothetical protein MYCFIDRAFT_78333 [Pseudocercospora fijiensis
CIRAD86]
Length = 122
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 32/131 (24%)
Query: 13 FCSKCGTILPL-FDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC+ CGT+L K ++C VC G N ++ +
Sbjct: 9 FCTDCGTLLDANTGRKEHIECDVC-------------------------GTLNKDTSIKK 43
Query: 72 EIKAEYTIHF-NTVEKEKQKDKTEIADG-----PIVERKCKRCNNDTMSYATLQLRSADE 125
+ F +T+ + D EI++G ++++ C++C N+ + + T QLRSADE
Sbjct: 44 VVTTSKPSAFPSTLRTRLRSDVQEISEGDMQTDAVIKQPCEKCGNEEVRFYTQQLRSADE 103
Query: 126 GQTIFFTCTKC 136
G T+F+TC +C
Sbjct: 104 GSTVFYTCPRC 114
>gi|123473529|ref|XP_001319952.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121902747|gb|EAY07729.1| hypothetical protein TVAG_118100 [Trichomonas vaginalis G3]
Length = 126
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 37/127 (29%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ CGT++P+ + G + C +CK ++ G + F ++
Sbjct: 26 FCTFCGTLVPISNV-GHMVCPLCKKAFD---------GKALQFSEK-------------- 61
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADG---PIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
TV+ K+ D+ G I++ KC C + + + T Q+RSADEGQTI
Sbjct: 62 ----------TVKIVKEADEITSKQGLARSIIKEKCPECGEEGLYFTTAQIRSADEGQTI 111
Query: 130 FFTCTKC 136
F+ C C
Sbjct: 112 FYECIHC 118
>gi|320166147|gb|EFW43046.1| hypothetical protein CAOG_08178 [Capsaspora owczarzaki ATCC 30864]
Length = 120
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 25/124 (20%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CGT+L L C C S + + L+ + + + F F++
Sbjct: 14 FCKDCGTVLDLSADDDYASCNACGKSREMADFE----------LQVTRSYSHPF--AFQK 61
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
K +NT++ K K G + KC C + M + T+QLRS DEGQT+F+
Sbjct: 62 PK------YNTMKVGKTK-------GATINEKCPSCGHPEMMFRTMQLRSVDEGQTVFYD 108
Query: 133 CTKC 136
C KC
Sbjct: 109 CEKC 112
>gi|308162510|gb|EFO64898.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia lamblia
P15]
Length = 103
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P+++ C +C++ Y+++Q+RSADEGQTIFF C C
Sbjct: 58 PVIDETCPKCHHGQAYYSSIQMRSADEGQTIFFECCNC 95
>gi|357465637|ref|XP_003603103.1| DNA-directed RNA polymerase I subunit RPA12 [Medicago truncatula]
gi|357470681|ref|XP_003605625.1| DNA-directed RNA polymerase I subunit RPA12 [Medicago truncatula]
gi|355492151|gb|AES73354.1| DNA-directed RNA polymerase I subunit RPA12 [Medicago truncatula]
gi|355506680|gb|AES87822.1| DNA-directed RNA polymerase I subunit RPA12 [Medicago truncatula]
Length = 115
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 29/126 (23%)
Query: 13 FCSKCGTIL--PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC CGT+L P D+ C +CKT +K KG +
Sbjct: 10 FCHLCGTMLTVPSTDY---ALCPLCKTKCN---------------IKDIKGKEISYTISA 51
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
E+I+ E I + +E++K V + C++C + ++ T Q+RSADEGQT F
Sbjct: 52 EDIRRELGI--DLIEEQK-------VQLSKVNKTCEKCGHGEAAFYTRQMRSADEGQTTF 102
Query: 131 FTCTKC 136
+TCT+C
Sbjct: 103 YTCTRC 108
>gi|356572419|ref|XP_003554366.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA12-like [Glycine max]
Length = 116
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 34/129 (26%)
Query: 13 FCSKCGTIL--PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC CGT+L P ++ +C +CKT H ++
Sbjct: 10 FCHLCGTLLTVPSTEY---AQCPLCKT------------------------HRDMQDVCD 42
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTE---IADGPIVERKCKRCNNDTMSYATLQLRSADEGQ 127
+EI +TIH + KE + E + + V +KC +C + +Y T Q+RSADEGQ
Sbjct: 43 KEIS--FTIHDEDIRKELGMEIIEEHTVMEYSXVCKKCGKCGHGEATYYTRQMRSADEGQ 100
Query: 128 TIFFTCTKC 136
T F+TCT C
Sbjct: 101 TTFYTCTGC 109
>gi|224123076|ref|XP_002318989.1| predicted protein [Populus trichocarpa]
gi|222857365|gb|EEE94912.1| predicted protein [Populus trichocarpa]
Length = 117
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 26/125 (20%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CGT++ L+ K V+C +CK ++ + + E+
Sbjct: 11 FCDLCGTMMFLYS-KEHVECPLCKFKKSAKDLSEREIS---------------YQVSSED 54
Query: 73 IKAEYTI-HFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
++ + I HF + K E+ D I +KC++C + + ++T Q+RSADEGQT FF
Sbjct: 55 MRRDLGISHF--------EGKMEVKDMEI-NKKCEKCGHTKLKFSTRQMRSADEGQTTFF 105
Query: 132 TCTKC 136
C C
Sbjct: 106 HCANC 110
>gi|424513733|emb|CCO66355.1| predicted protein [Bathycoccus prasinos]
Length = 250
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
V+ C +C+N + + T+QLRSADEGQT+F+ C KC
Sbjct: 207 VDEPCPKCDNHVLRFYTMQLRSADEGQTVFYECEKC 242
>gi|159463406|ref|XP_001689933.1| DNA-directed RNA polymerase I subunit [Chlamydomonas reinhardtii]
gi|158283921|gb|EDP09671.1| DNA-directed RNA polymerase I subunit [Chlamydomonas reinhardtii]
Length = 124
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
V+ C +CN+ + Y T+QLRSADEGQT+F+ C C
Sbjct: 81 VDEPCPKCNHRQLEYYTMQLRSADEGQTVFYECKNC 116
>gi|145546007|ref|XP_001458687.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426508|emb|CAK91290.1| unnamed protein product [Paramecium tetraurelia]
Length = 118
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 22/126 (17%)
Query: 11 SEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
++FC +C +L L + ++C C + QP + + K +L+
Sbjct: 7 ADFCPQCHFMLELPEVMDIIECNRCGYKCSITDYQPKYI------ISTIKMEPKSWLS-- 58
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
N ++ K D++ A ++E+ C +C+++ ++T QLRSADEG T+F
Sbjct: 59 -----------NQPQESKLSDQSHRA---VIEQVCPKCSHEEAYFSTAQLRSADEGSTVF 104
Query: 131 FTCTKC 136
+ C KC
Sbjct: 105 YECVKC 110
>gi|426201946|gb|EKV51869.1| hypothetical protein AGABI2DRAFT_190080 [Agaricus bisporus var.
bisporus H97]
Length = 125
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 28/129 (21%)
Query: 13 FCSKCGTILPLF-DFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC +CGT+L D + + C C+ ++P +I+ R H + F +
Sbjct: 12 FCPECGTLLSRPKDSEDSIICEQCR------HEEPASSYDNIVITTR--SHPDAFPSAL- 62
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIAD----GPIVERKCKRCNNDTMSYATLQLRSADEGQ 127
++K+K +T+ D G +V KC C + +QLRSADEG
Sbjct: 63 --------------RQKRKTQTKFHDKGDQGTLVSEKCPACGHMEAYSKEMQLRSADEGS 108
Query: 128 TIFFTCTKC 136
TIF+TC C
Sbjct: 109 TIFYTCASC 117
>gi|392596927|gb|EIW86249.1| DNA-directed RNA polymerase I kDa polypeptide [Coniophora puteana
RWD-64-598 SS2]
Length = 125
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 25/127 (19%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CGT+L + G+ VC+ + ++P DI + R H + F +
Sbjct: 13 FCPNCGTLLDTPN--GNTPVVVCEQC---KHEEPASSFHDIEIVTR--SHPDAFPSAL-- 63
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADG---PIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
++K+K +T++ +G P V KC C Y Q+RSADEG TI
Sbjct: 64 -------------RQKRKTQTKLHEGKVLPKVAEKCPACEYPEAFYEEKQMRSADEGSTI 110
Query: 130 FFTCTKC 136
+TC C
Sbjct: 111 LYTCVSC 117
>gi|71749298|ref|XP_827988.1| RNA polymerase III C11 subunit [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833372|gb|EAN78876.1| RNA polymerase III C11 subunit, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261333746|emb|CBH16741.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei
gambiense DAL972]
Length = 126
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 13 FCSKCGTIL---PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAV 69
FC CGT+L P + C C+ Q ++PL + FLK +N +
Sbjct: 3 FCPFCGTLLLIEPAYPC-NRFSCSSCRYVVPIQSRRPLTINHS--FLK-----YNKVVDD 54
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKC----KRCNNDTMSYATLQLRSADE 125
+E + T+ K K++ E+ G ++ +C K+C+ D Y +Q+RSADE
Sbjct: 55 DDEKGSSNTV------KRGVKEEEEVDGGQVITVRCQNDEKQCDGDRAHYVQIQMRSADE 108
Query: 126 GQTIFFTCTKC 136
T FF C KC
Sbjct: 109 PATTFFKCLKC 119
>gi|448728181|ref|ZP_21710512.1| transcription factor TFIIS [Halococcus saccharolyticus DSM 5350]
gi|445797399|gb|EMA47874.1| transcription factor TFIIS [Halococcus saccharolyticus DSM 5350]
Length = 86
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 66 FLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADG-----PIVERKCKRCNNDTMSYATLQL 120
+ +FEEI E T + ++Q + +++D P E C C+ND + Q+
Sbjct: 6 YADLFEEITGE----TGTTQSQEQSEIIDVSDAEERGLPTTEVDCPECDNDRAYWYMQQI 61
Query: 121 RSADEGQTIFFTCTKC 136
RSADE +T FF CT+C
Sbjct: 62 RSADESETRFFVCTEC 77
>gi|429962524|gb|ELA42068.1| hypothetical protein VICG_00917 [Vittaforma corneae ATCC 50505]
Length = 101
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
G + C +CN M Y+T QLRSADEGQT+F++C C
Sbjct: 55 GARISLSCPKCNRPEMMYSTAQLRSADEGQTVFYSCEGC 93
>gi|409083004|gb|EKM83361.1| hypothetical protein AGABI1DRAFT_110030 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 125
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 28/129 (21%)
Query: 13 FCSKCGTILPLFDFKGD-VKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC +CGT+L D + C C+ ++P +I+ R H + F +
Sbjct: 12 FCPECGTLLSRPKDSADSIICEQCR------HEEPASSYDNIVITTR--SHPDAFPSAL- 62
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIAD----GPIVERKCKRCNNDTMSYATLQLRSADEGQ 127
++K+K +T+ D G +V KC C + +QLRSADEG
Sbjct: 63 --------------RQKRKTQTKFHDKGDQGTLVSEKCPACGHMEAYSKEMQLRSADEGS 108
Query: 128 TIFFTCTKC 136
TIF+TC C
Sbjct: 109 TIFYTCASC 117
>gi|351723413|ref|NP_001236766.1| uncharacterized protein LOC100527489 [Glycine max]
gi|255632466|gb|ACU16583.1| unknown [Glycine max]
Length = 116
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 28/126 (22%)
Query: 13 FCSKCGTIL--PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC+ CGT+L P ++ +C +CKT Q+ + +I F
Sbjct: 10 FCNLCGTMLTVPSTEY---AQCPLCKTRRDIQD----ICDKEISFT-----------ISD 51
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
E+I+ E + +E+ + + V +KC++C + +Y T Q+RSADEGQT F
Sbjct: 52 EDIRRE--LGMEIIEEHA------VMEYSKVSKKCEKCGHGEATYYTRQMRSADEGQTTF 103
Query: 131 FTCTKC 136
+TCT C
Sbjct: 104 YTCTGC 109
>gi|356523634|ref|XP_003530442.1| PREDICTED: uncharacterized protein LOC100804955 [Glycine max]
Length = 204
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
V +KC++C + +Y T Q+RSAD+GQT F+TCT C
Sbjct: 162 VSKKCEKCGHGEATYYTRQMRSADKGQTTFYTCTGC 197
>gi|255080896|ref|XP_002504014.1| predicted protein [Micromonas sp. RCC299]
gi|226519281|gb|ACO65272.1| predicted protein [Micromonas sp. RCC299]
Length = 131
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+V+ KC +C++ +++ T+QLRS DEGQT+F+ C KC
Sbjct: 87 VVDEKCPKCSHKGLNFYTMQLRSVDEGQTVFYECPKC 123
>gi|428673070|gb|EKX73983.1| conserved hypothetical protein [Babesia equi]
Length = 265
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 14 CSKCGTIL-PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
C C +I+ P+F KGD V + Q + L + R G+ VFEE
Sbjct: 148 CQTCNSIIAPIFK-KGDSDSLVDSLRADEADAQSVYL-----YGTR-SGY------VFEE 194
Query: 73 I-KAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
K + H N+ + + K + V++ C++C +DT +++T Q RSADEG ++ +
Sbjct: 195 SGKRWWKSHMNSALLDAKSAKK--SGKQTVKQICEKCGHDTHTFSTFQARSADEGMSVMY 252
Query: 132 TCTKC 136
CTKC
Sbjct: 253 ECTKC 257
>gi|397589808|gb|EJK54805.1| hypothetical protein THAOC_25535 [Thalassiosira oceanica]
Length = 321
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+VE C +C + + TLQLRS DEGQT+F+ C +C
Sbjct: 277 VVEEPCPKCGAPEVGFYTLQLRSVDEGQTVFYECPQC 313
>gi|389627238|ref|XP_003711272.1| hypothetical protein MGG_07394 [Magnaporthe oryzae 70-15]
gi|351643604|gb|EHA51465.1| hypothetical protein MGG_07394 [Magnaporthe oryzae 70-15]
Length = 115
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
+FC+ CG LP+ +VKC C G + L+ + + F L
Sbjct: 4 QFCNDCGDTLPI-SGNPEVKCDCC----GNMNKNTLINVTTVSSSRDFDSPLRL------ 52
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
EY K+ + E+ + P ++ C+ C + T+ Y TLQ R ADEG T+F+
Sbjct: 53 ---KEYG------NKDAMASRPEM-NWPSIDENCRFCPSKTVRYTTLQTRGADEGSTVFY 102
Query: 132 TCTKC 136
C C
Sbjct: 103 FCEGC 107
>gi|299116337|emb|CBN76141.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 115
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 35/127 (27%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC CG++L + GD+ C C H + F E
Sbjct: 5 FCPSCGSVLDPPE-SGDILCDHC--------------------------HLRISYESFGE 37
Query: 73 IKAEYTIHFNTVEKE------KQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
++ T N E E ++ +K E+ VE C +C + M + T+QLRSADEG
Sbjct: 38 VEV-VTRSQNRAEPEWLVQIQRKGEKQELQRA-TVEEACPKCGHPKMEFYTMQLRSADEG 95
Query: 127 QTIFFTC 133
QT+F+ C
Sbjct: 96 QTVFYEC 102
>gi|281203893|gb|EFA78089.1| RNA polymerase I subunit [Polysphondylium pallidum PN500]
Length = 311
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 29/130 (22%)
Query: 8 NVESEFCSKCGTILPLFD-FKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
+++++FC +C ++L + F +KC CK IL K LF
Sbjct: 202 DMKADFCPECNSLLQYLEPFGKQIKCTTCK----------FRADKSILGKKIITSKSTLF 251
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
I VE E E G ++ C C + M + T Q RSADEG
Sbjct: 252 ------------IKPQKVEDE------EEDRGAEIDELCPSCGHTKMYFKTAQTRSADEG 293
Query: 127 QTIFFTCTKC 136
QTIF+ C KC
Sbjct: 294 QTIFYECQKC 303
>gi|19173459|ref|NP_597262.1| DNA-DIRECTED RNA POLYMERASE I SUBUNIT M [Encephalitozoon cuniculi
GB-M1]
gi|19171048|emb|CAD26438.1| DNA-DIRECTED RNA POLYMERASE I SUBUNIT M [Encephalitozoon cuniculi
GB-M1]
gi|449328915|gb|AGE95191.1| DNA-directed RNA polymerase I subunit M [Encephalitozoon cuniculi]
Length = 99
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 32/117 (27%)
Query: 17 CGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEEIKAE 76
CGT++ + V+C CK +E ++ P + E+K +
Sbjct: 5 CGTLVYVRSDSSRVECPRCK-----RENSVAMIKP-----------------TYTEVKVQ 42
Query: 77 YTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+H V+ G ++ +C C + M Y T QLRS DEGQT+F++C
Sbjct: 43 RDLHIEAVD----------VQGAKIKHRCPACGAEEMMYNTAQLRSTDEGQTVFYSC 89
>gi|449550537|gb|EMD41501.1| hypothetical protein CERSUDRAFT_61506 [Ceriporiopsis subvermispora
B]
Length = 126
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 28/129 (21%)
Query: 13 FCSKCGTILPLF-DFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC +CGT+L L D + V C CK ++P +I + R H + F +
Sbjct: 13 FCPECGTLLNLPEDNQHVVICEQCK------HEEPASSYENIEIVTR--SHPDAFPSAL- 63
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGP----IVERKCKRCNNDTMSYATLQLRSADEGQ 127
++K K +T++ D V KC C + QLRSADEG
Sbjct: 64 --------------RQKTKTQTKVHDANEGLLKVTEKCPECGHMEAYSKEAQLRSADEGS 109
Query: 128 TIFFTCTKC 136
TIF+TC KC
Sbjct: 110 TIFYTCVKC 118
>gi|448735314|ref|ZP_21717530.1| transcription factor TFIIS [Halococcus salifodinae DSM 8989]
gi|445798652|gb|EMA49049.1| transcription factor TFIIS [Halococcus salifodinae DSM 8989]
Length = 86
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 64 NLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADG-----PIVERKCKRCNNDTMSYATL 118
+ + +FEEI E T E ++Q + ++ D P + +C C+ND +
Sbjct: 4 DEYADLFEEITGE----TGTTESQEQSEIIDVTDAEDRGLPTTDVECPECDNDRAYWYMQ 59
Query: 119 QLRSADEGQTIFFTCTKC 136
Q+R+ADE +T FF CT+C
Sbjct: 60 QIRAADESETRFFVCTEC 77
>gi|336364359|gb|EGN92719.1| hypothetical protein SERLA73DRAFT_127310 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378259|gb|EGO19417.1| hypothetical protein SERLADRAFT_374144 [Serpula lacrymans var.
lacrymans S7.9]
Length = 127
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 81 FNTVEKEKQKDKTEIADG---PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
F + ++K+K +T+I G P V KC C + Y Q+RSADEG TI +TC C
Sbjct: 61 FPSALRQKRKTQTKIHQGKVLPKVSEKCPACGHLEAYYEEKQMRSADEGSTILYTCVSC 119
>gi|300709064|ref|XP_002996700.1| hypothetical protein NCER_100160 [Nosema ceranae BRL01]
gi|239606021|gb|EEQ83029.1| hypothetical protein NCER_100160 [Nosema ceranae BRL01]
Length = 108
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 78 TIHFNTVEKEK-----QKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
T H +TV +K ++ + + G ++ +C CN + M Y T QLRSADEGQT+F+T
Sbjct: 38 TSHLDTVVMQKTFKIEEEVELKEVKGAKIKYQCPGCNAEEMMYNTAQLRSADEGQTVFYT 97
Query: 133 C 133
C
Sbjct: 98 C 98
>gi|453081658|gb|EMF09707.1| hypothetical protein SEPMUDRAFT_16755, partial [Mycosphaerella
populorum SO2202]
Length = 118
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++++ D + C+RC + + + + QLRSADEG TIF+TC KC
Sbjct: 66 ESDMQDAATINLPCERCGHPEVKFYSRQLRSADEGSTIFYTCPKC 110
>gi|73668417|ref|YP_304432.1| DNA-directed RNA polymerase subunit M [Methanosarcina barkeri str.
Fusaro]
gi|72395579|gb|AAZ69852.1| DNA-directed RNA polymerase, subunit M [Methanosarcina barkeri str.
Fusaro]
Length = 104
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+I+ P KC C N+T ++ QLRSADE +T FF CTKC
Sbjct: 54 QISGLPTTSVKCPECGNNTAAWWLRQLRSADESETRFFKCTKC 96
>gi|300712134|ref|YP_003737948.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
gi|448295824|ref|ZP_21485887.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
gi|299125817|gb|ADJ16156.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
gi|445583253|gb|ELY37585.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
Length = 103
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC +CG+++ D + +VCK G +QP KG
Sbjct: 2 EFCDECGSMMMAQD-----EVWVCK---GCGHEQP-------------KGD--------- 31
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
A YT E E + E + P +C C+ND + Q+RSADE +T FF
Sbjct: 32 --SASYTTTDAQEESEVIESGAENSGLPTTSAQCPECDNDRAYWYMQQIRSADESETRFF 89
Query: 132 TCTKC 136
CT+C
Sbjct: 90 VCTEC 94
>gi|440462614|gb|ELQ32621.1| hypothetical protein OOU_Y34scaffold01081g3 [Magnaporthe oryzae
Y34]
gi|440477488|gb|ELQ58534.1| hypothetical protein OOW_P131scaffold01585g3 [Magnaporthe oryzae
P131]
Length = 185
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
+FC+ CG LP+ +VKC C G + L+ + + F L
Sbjct: 4 QFCNDCGDTLPI-SGNPEVKCDCC----GNMNKNTLINVTTVSSSRDFDSPLRL------ 52
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
EY K+ + E+ + P ++ C+ C + T+ Y TLQ R ADEG T+F+
Sbjct: 53 ---KEYG------NKDAMASRPEM-NWPSIDENCRFCPSKTVRYTTLQTRGADEGSTVFY 102
Query: 132 TCTKC 136
C C
Sbjct: 103 FCEGC 107
>gi|429217535|ref|YP_007175525.1| transcription factor S, archaeal [Caldisphaera lagunensis DSM
15908]
gi|429134064|gb|AFZ71076.1| transcription factor S, archaeal [Caldisphaera lagunensis DSM
15908]
Length = 124
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 18/124 (14%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC KCG+++ G + K Y T+ Q + L V E+
Sbjct: 11 FCPKCGSLMKPKHIGGKLYLVCPKCGYKTEVDQ---------------NSLSNTLKVKEK 55
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
I+ V+ + +I G I +C RC ND + +Q R+ADE T F+
Sbjct: 56 IQHTPKDKTIVVDSQAPPPTAQIVKGSI---RCPRCGNDELLAWMIQTRAADEPPTRFYR 112
Query: 133 CTKC 136
CTKC
Sbjct: 113 CTKC 116
>gi|452209985|ref|YP_007490099.1| Transcription factor S [Methanosarcina mazei Tuc01]
gi|452099887|gb|AGF96827.1| Transcription factor S [Methanosarcina mazei Tuc01]
Length = 95
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P KC C N+T ++ QLRSADE +T FF CTKC
Sbjct: 50 PTTNAKCPECGNNTAAWWLRQLRSADESETRFFKCTKC 87
>gi|315050149|ref|XP_003174449.1| hypothetical protein MGYG_04622 [Arthroderma gypseum CBS 118893]
gi|311342416|gb|EFR01619.1| hypothetical protein MGYG_04622 [Arthroderma gypseum CBS 118893]
Length = 110
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 93 TEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
T+ + ++ C++C+ +++A +QLRSADEG TIF++C+KC
Sbjct: 64 TQERESRTIQVDCEKCDAKEVTWAEMQLRSADEGSTIFYSCSKC 107
>gi|169806618|ref|XP_001828053.1| DNA-directed RNA polymerase, subunit M-transcription elongation
factor TFIIS [Enterocytozoon bieneusi H348]
gi|161779181|gb|EDQ31205.1| DNA-directed RNA polymerase, subunit M-transcription elongation
factor TFIIS [Enterocytozoon bieneusi H348]
Length = 102
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C++C N+ T+QLRSADEGQT+F+ CTKC
Sbjct: 63 CRKCGNNEAFVHTIQLRSADEGQTVFYECTKC 94
>gi|345570642|gb|EGX53463.1| hypothetical protein AOL_s00006g329 [Arthrobotrys oligospora ATCC
24927]
Length = 120
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 30/129 (23%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC+ CG +L + +KC VC G N +
Sbjct: 9 FCTDCGNLLDRSVGQDKIKCNVC-------------------------GCINKDTSSRTV 43
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPI-----VERKCKRCNNDTMSYATLQLRSADEGQ 127
+ F + K+K +A + ++ C +C N M + T+QLRSADEG
Sbjct: 44 VTHSNPDAFPSALKQKHSTGQNLAPEDVGGQAEIDTPCPKCENPVMKFTTVQLRSADEGA 103
Query: 128 TIFFTCTKC 136
T+F+ C C
Sbjct: 104 TVFYNCPNC 112
>gi|409051110|gb|EKM60586.1| hypothetical protein PHACADRAFT_179818 [Phanerochaete carnosa
HHB-10118-sp]
Length = 127
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 34/132 (25%)
Query: 13 FCSKCGTILPL-FDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC CGT+L L D + +V C C GH + +E
Sbjct: 14 FCPDCGTLLNLPRDDENEVACEQC-------------------------GHIE-PASSYE 47
Query: 72 EIKAEYTIH---FNTVEKEKQKDKTEIADGP----IVERKCKRCNNDTMSYATLQLRSAD 124
I H F + ++K K +T++ D +V KC C + +QLRSAD
Sbjct: 48 NITVITRSHPDAFPSALRQKGKTQTKMHDSEAALLLVTEKCPSCGHMEAYSKEMQLRSAD 107
Query: 125 EGQTIFFTCTKC 136
EG TI +TC KC
Sbjct: 108 EGSTILYTCAKC 119
>gi|21227500|ref|NP_633422.1| DNA-directed RNA polymerase subunit M [Methanosarcina mazei Go1]
gi|20905876|gb|AAM31094.1| DNA-directed RNA polymerase subunit M [Methanosarcina mazei Go1]
Length = 107
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P KC C N+T ++ QLRSADE +T FF CTKC
Sbjct: 62 PTTNAKCPECGNNTAAWWLRQLRSADESETRFFKCTKC 99
>gi|76800836|ref|YP_325844.1| DNA-directed RNA polymerase subunit M 1 [Natronomonas pharaonis DSM
2160]
gi|76556701|emb|CAI48273.1| transcription elongation factor TFS [Natronomonas pharaonis DSM
2160]
Length = 108
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 91 DKTEIAD---GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D +E+ D GP C C ND Y Q+R+ADE +T FFTCT+C
Sbjct: 51 DMSEVDDSEIGPTTRVNCPECGNDRARYEMKQIRAADESETRFFTCTEC 99
>gi|261197766|ref|XP_002625285.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
gi|239595248|gb|EEQ77829.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
gi|239607665|gb|EEQ84652.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
Length = 261
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 45 QPLLLGPDILF----LKRFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPI 100
Q L GP ++ L R + +F +++E + K+++ ++ D
Sbjct: 76 QGALSGPTPIYGSPVLSRLRLYFRHICRTKHSMRSEISYTGELTVKDRESNRRIQVD--- 132
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C++C+ ++++ +QLRSADEG TIF+ C KC
Sbjct: 133 ----CQKCDLMKVTWSEMQLRSADEGSTIFYRCPKC 164
>gi|429965409|gb|ELA47406.1| hypothetical protein VCUG_01057 [Vavraia culicis 'floridensis']
Length = 90
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
G ++ + C +C ++ M Y +QLRSADEGQTIF+ C
Sbjct: 45 GAMIAQVCAKCGSEKMYYKAVQLRSADEGQTIFYEC 80
>gi|385803764|ref|YP_005840164.1| DNA-directed RNA polymerase subunit M1 [Haloquadratum walsbyi C23]
gi|339729256|emb|CCC40490.1| transcription elongation factor TFS [Haloquadratum walsbyi C23]
Length = 107
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 81 FNTVEKEKQKDKTEIAD------GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
+ E +++ +++D GP C C NDT Y Q+R+ADE +T FFTCT
Sbjct: 37 MTSTESQQESGAVDVSDIDDADIGPTTTVICPECGNDTARYEMKQIRAADESETRFFTCT 96
Query: 135 KC 136
+C
Sbjct: 97 EC 98
>gi|261188676|ref|XP_002620752.1| DNA-directed RNA polymerase I polypeptide [Ajellomyces dermatitidis
SLH14081]
gi|239593110|gb|EEQ75691.1| DNA-directed RNA polymerase I polypeptide [Ajellomyces dermatitidis
SLH14081]
gi|239606264|gb|EEQ83251.1| DNA-directed RNA polymerase I polypeptide [Ajellomyces dermatitidis
ER-3]
gi|327355957|gb|EGE84814.1| DNA-directed RNA polymerase I polypeptide [Ajellomyces dermatitidis
ATCC 18188]
Length = 122
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
I + C C+ M Y TLQLRSADEG T+F++C C
Sbjct: 78 IAQESCPECDRPEMRYHTLQLRSADEGSTVFYSCEGC 114
>gi|393219008|gb|EJD04496.1| DNA-directed RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 126
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 28/129 (21%)
Query: 13 FCSKCGTILPLFDFKGD-VKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC CGT+L + + C C F ++ + N+ +
Sbjct: 13 FCPDCGTLLDFPTADAEFIPCEQCG------------------FQEKASAYENIVITTRS 54
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGP----IVERKCKRCNNDTMSYATLQLRSADEGQ 127
+ A F +V ++K+K +T+I + IV +C C +D Q+RSADEG
Sbjct: 55 HLDA-----FPSVLRQKRKTQTKIHESGETRMIVNEQCPNCGHDEAYSEEKQMRSADEGS 109
Query: 128 TIFFTCTKC 136
TI +TC C
Sbjct: 110 TILYTCVSC 118
>gi|110668318|ref|YP_658129.1| DNA-directed RNA polymerase subunit M1 [Haloquadratum walsbyi DSM
16790]
gi|109626065|emb|CAJ52516.1| transcription elongation factor TFS [Haloquadratum walsbyi DSM
16790]
Length = 107
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 81 FNTVEKEKQKDKTEIAD------GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
+ E +++ +++D GP C C NDT Y Q+R+ADE +T FFTCT
Sbjct: 37 MTSTESQQESGAVDVSDIDDADIGPTTTVICPECGNDTARYEMKQIRAADESETRFFTCT 96
Query: 135 KC 136
+C
Sbjct: 97 EC 98
>gi|356561907|ref|XP_003549218.1| PREDICTED: transcription elongation factor A protein 3-like
[Glycine max]
Length = 196
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
V +KC++C + +Y T+Q+RSAD+GQT F+TCT
Sbjct: 154 VSKKCEKCGHGEATYYTIQMRSADKGQTTFYTCT 187
>gi|386001105|ref|YP_005919404.1| DNA-directed RNA polymerase subunit M [Methanosaeta harundinacea
6Ac]
gi|357209161|gb|AET63781.1| DNA-directed RNA polymerase subunit M [Methanosaeta harundinacea
6Ac]
Length = 93
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ +E A P + KC C NDT + QLRSADE + FF CTKC
Sbjct: 40 EDSEGAGLPTTKYKCPECGNDTAYWWLRQLRSADESEVRFFRCTKC 85
>gi|440493689|gb|ELQ76126.1| RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12
[Trachipleistophora hominis]
Length = 151
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
G ++ + C +C ++ M Y +QLRSADEGQTIF+ C
Sbjct: 106 GAMIAQVCVKCGSEKMYYKAVQLRSADEGQTIFYEC 141
>gi|387597348|gb|EIJ94968.1| hypothetical protein NEPG_00493 [Nematocida parisii ERTm1]
Length = 96
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 89 QKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
QK E G ++ +C C ++ + Y T+QLRSADEGQT+F+ C
Sbjct: 40 QKTVKERHKGAKIKEECPECRSEYLYYYTMQLRSADEGQTVFYEC 84
>gi|449015859|dbj|BAM79261.1| DNA-directed RNA polymerase I subunit [Cyanidioschyzon merolae
strain 10D]
Length = 140
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 21/137 (15%)
Query: 9 VESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLA 68
VE++FC CG + C C + P L I++ + L L
Sbjct: 8 VETQFCDCCGRYREPVEAGEPKPCVGCGS-------LPPLPQKTIVYEVPVR-PTQLLL- 58
Query: 69 VFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERK---------CKRCNNDTMSYATLQ 119
E++A YT + + + P +E C +CN+ + Y T+Q
Sbjct: 59 ---ELQAAYTKRVSGEDGRAGSAAAALTTDPSMEATRQVVRGGECCPKCNSQELYYETVQ 115
Query: 120 LRSADEGQTIFFTCTKC 136
+RSADEGQTI + C +C
Sbjct: 116 MRSADEGQTILYECCRC 132
>gi|387593689|gb|EIJ88713.1| hypothetical protein NEQG_01403 [Nematocida parisii ERTm3]
Length = 94
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 89 QKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
QK E G ++ +C C ++ + Y T+QLRSADEGQT+F+ C
Sbjct: 40 QKTVKERHKGAKIKEECPECRSEYLYYYTMQLRSADEGQTVFYEC 84
>gi|327299404|ref|XP_003234395.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
gi|326463289|gb|EGD88742.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
Length = 116
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 97 DGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
D +++ C C M Y TLQLRSADEG T+F+TC
Sbjct: 75 DDAVIQETCPDCGRTEMRYYTLQLRSADEGSTVFYTC 111
>gi|315052532|ref|XP_003175640.1| DNA-directed RNA polymerase I subunit RPA12 [Arthroderma gypseum
CBS 118893]
gi|311340955|gb|EFR00158.1| DNA-directed RNA polymerase I subunit RPA12 [Arthroderma gypseum
CBS 118893]
Length = 118
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 97 DGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
D +++ C C M Y TLQLRSADEG T+F+TC
Sbjct: 77 DDAVIQETCPDCGRTEMRYYTLQLRSADEGSTVFYTC 113
>gi|448411557|ref|ZP_21575958.1| DNA-directed RNA polymerase subunit M [Halosimplex carlsbadense
2-9-1]
gi|445670129|gb|ELZ22733.1| DNA-directed RNA polymerase subunit M [Halosimplex carlsbadense
2-9-1]
Length = 99
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
GP + +C C ND + Q+R+ADE +T FFTCT+C
Sbjct: 52 GPTTDARCPECGNDRAFWEMKQIRAADESETRFFTCTEC 90
>gi|170290660|ref|YP_001737476.1| DNA-directed RNA polymerase subunit M [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174740|gb|ACB07793.1| DNA-directed RNA polymerase, subunit M [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 108
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 25/124 (20%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC KCGT+L G Y C + E P KG+ + V E
Sbjct: 2 FCPKCGTLL-RPKKAGKRLIYYCPSCGYESESPP-------------KGNSQVITKVTSE 47
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
+ I +++E P+VE +C +C ND + +Q R+ADE T +
Sbjct: 48 -SGDVIIE----------EESEKISAPVVEARCPKCGNDKAYFQIVQTRAADEPPTRIYK 96
Query: 133 CTKC 136
CTKC
Sbjct: 97 CTKC 100
>gi|440633594|gb|ELR03513.1| hypothetical protein GMDG_01264 [Geomyces destructans 20631-21]
Length = 120
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 34/132 (25%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
+FCS CG LP+ VKC CK Q +
Sbjct: 8 QFCSDCGDTLPI-SMDQMVKCDCCKMINKNQ--------------------------LLS 40
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIV-------ERKCKRCNNDTMSYATLQLRSAD 124
+ T +F ++ +EK KT+ +V E+ C CN + ++++ Q R AD
Sbjct: 41 KTTISTTSNFPSLLREKLTSKTQALTADVVQDSKQRTEKLCPDCNKEELTFSQAQTRGAD 100
Query: 125 EGQTIFFTCTKC 136
EG TIF+ C C
Sbjct: 101 EGSTIFYFCLNC 112
>gi|20089011|ref|NP_615086.1| transcription factor S [Methanosarcina acetivorans C2A]
gi|19913865|gb|AAM03566.1| archaeal transcription factor S [Methanosarcina acetivorans C2A]
Length = 104
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P KC C N+T ++ QLRSADE +T FF CTKC
Sbjct: 59 PTTNVKCPECGNNTAAWWLRQLRSADESETRFFKCTKC 96
>gi|326474028|gb|EGD98037.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
gi|326478225|gb|EGE02235.1| DNA-directed RNA polymerase I polypeptide [Trichophyton equinum CBS
127.97]
Length = 116
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 97 DGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
D +++ C C M Y TLQLRSADEG T+F+TC
Sbjct: 75 DDAVIQETCPDCGRTEMRYYTLQLRSADEGSTVFYTC 111
>gi|226293906|gb|EEH49326.1| DNA-directed RNA polymerase I subunit RPA12 [Paracoccidioides
brasiliensis Pb18]
Length = 130
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
I C C M Y TLQ+RSADEG T+F+TC +C
Sbjct: 78 IASESCPECGRPEMRYYTLQIRSADEGTTVFYTCEEC 114
>gi|291002057|ref|XP_002683595.1| predicted protein [Naegleria gruberi]
gi|284097224|gb|EFC50851.1| predicted protein [Naegleria gruberi]
Length = 143
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
I+ C +C++ + T+QLRSADEGQT+F+ C KC
Sbjct: 99 IINEPCPKCHHPQRKFFTMQLRSADEGQTVFYECLKC 135
>gi|440635961|gb|ELR05880.1| transcription elongation factor S-II [Geomyces destructans
20631-21]
Length = 301
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 26 FKGDVKCYVCKTS---YGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEEIKAEYTIHFN 82
+KGD Y K + +Q LGP +L + F + +E+K +
Sbjct: 180 YKGDTPEYRAKMRSLFQNLKNKQNKELGPRVLSGEIPADKF--VIMTHDELK---SAERK 234
Query: 83 TVEKEKQKDKTEIADGPIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ E QKD + A P+ ER KC RC +SY+ Q RSADE T F CT C
Sbjct: 235 KEDDELQKDNMKRAQVPMAERSISDALKCGRCGQKKVSYSQAQTRSADEPMTTFCECTVC 294
>gi|375083639|ref|ZP_09730657.1| DNA-directed RNA polymerase subunit m [Thermococcus litoralis DSM
5473]
gi|374741639|gb|EHR78059.1| DNA-directed RNA polymerase subunit m [Thermococcus litoralis DSM
5473]
Length = 108
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 26/125 (20%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
+FC KCG+I+ L D K V +VC+ G +E PL D R+K + +
Sbjct: 2 KFCPKCGSIM-LPDKKKGV--FVCRKC-GYEE--PL----DPETANRYK--------ITQ 43
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
++K E +E++ IA P V+ C +C ND + +Q R+ DE TIF+
Sbjct: 44 KVKHERE-DIPVIEQD-------IATLPKVKITCPKCGNDEAYWWEMQTRAGDEPSTIFY 95
Query: 132 TCTKC 136
CTKC
Sbjct: 96 RCTKC 100
>gi|259483810|tpe|CBF79505.1| TPA: DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
(AFU_orthologue; AFUA_2G05480) [Aspergillus nidulans
FGSC A4]
Length = 121
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 22/123 (17%)
Query: 13 FCSKCGTIL--PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC+ CG++L + D + C VC GT+ + + P + + F L
Sbjct: 9 FCTDCGSLLEGSVGDPTRILVCDVC----GTRNKDTV---PKTIVSESKPSSFPSSLRA- 60
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+ ++ Q DK A ++E+ C +C M + T+QLRSADEG T+F
Sbjct: 61 ---------KRSAIQTLTQADKRTEA---LIEKDCPKCGRKEMYFTTVQLRSADEGSTVF 108
Query: 131 FTC 133
+TC
Sbjct: 109 YTC 111
>gi|448420369|ref|ZP_21581116.1| DNA-directed RNA polymerase, subunit m [Halosarcina pallida JCM
14848]
gi|445673520|gb|ELZ26080.1| DNA-directed RNA polymerase, subunit m [Halosarcina pallida JCM
14848]
Length = 107
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 66 FLAVFEEIKAEYTIHFNTVEKEKQKDKTEIAD---GPIVERKCKRCNNDTMSYATLQLRS 122
F + K ++ E + D +E+ D GP KC C +D Y Q+RS
Sbjct: 25 FEKARDSAKEDHMTSTAAREDSEVVDMSEVDDAEIGPTTTVKCPECGHDRARYEMKQIRS 84
Query: 123 ADEGQTIFFTCTKC 136
ADE +T FFTC +C
Sbjct: 85 ADESETRFFTCVEC 98
>gi|315230104|ref|YP_004070540.1| transcription factor [Thermococcus barophilus MP]
gi|315183132|gb|ADT83317.1| transcription factor [Thermococcus barophilus MP]
Length = 109
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 26/125 (20%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
+FC KCG+I+ L D K +V +VC+ G +E L P+ R
Sbjct: 3 KFCPKCGSIM-LPDRKREV--FVCRKC-GYEEP----LNPEAAKAYRLTQ---------- 44
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
K E+ + + ++ ++A P V+ C +C ND + LQ R+ DE TIF+
Sbjct: 45 --KVEHKVEDIPIIEQ------DLATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFY 96
Query: 132 TCTKC 136
CTKC
Sbjct: 97 RCTKC 101
>gi|116754333|ref|YP_843451.1| transcription factor TFIIS [Methanosaeta thermophila PT]
gi|116665784|gb|ABK14811.1| DNA-directed RNA polymerase, subunit M [Methanosaeta thermophila
PT]
Length = 85
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%)
Query: 82 NTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
N +E+ + E A P + KC C NDT + QLR+ADE + FF CTKC
Sbjct: 23 NKLERTVPVLEQESAGLPTTKAKCPECGNDTAYWWLRQLRAADESEVRFFRCTKC 77
>gi|302348255|ref|YP_003815893.1| DNA-directed RNA polymerase subunit M [Acidilobus saccharovorans
345-15]
gi|302328667|gb|ADL18862.1| putative DNA-directed RNA polymerase subunit M [Acidilobus
saccharovorans 345-15]
Length = 117
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
+FC +CGT++ G + +VC G +E+ P K L+ E
Sbjct: 2 KFCPRCGTLMRPKSINGKL-VFVCPKC-GYEEEVP------------SKARVATPLSFTE 47
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
+ V+ ++ G + +C RC ND + +Q R+ADE T F+
Sbjct: 48 RVAHTPKERIIVVDANAPPPTAQVLKGSV---RCPRCGNDEVLAWMMQTRAADEPPTRFY 104
Query: 132 TCTKC 136
CTKC
Sbjct: 105 RCTKC 109
>gi|242398553|ref|YP_002993977.1| DNA-directed RNA polymerase subunit m [Thermococcus sibiricus MM
739]
gi|242264946|gb|ACS89628.1| DNA-directed RNA polymerase subunit m [Thermococcus sibiricus MM
739]
Length = 108
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 26/125 (20%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
+FC KCG I+ L D K V +VC+ G +E L ++ K H + V E
Sbjct: 2 KFCPKCGNIM-LPDKKRGV--FVCRKC-GYEEPLDLETASKYKITQKIK-HDREDIPVIE 56
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
+ ++A P V+ C +C ND + LQ R+ DE TIF+
Sbjct: 57 Q---------------------DVATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFY 95
Query: 132 TCTKC 136
CTKC
Sbjct: 96 RCTKC 100
>gi|388510306|gb|AFK43219.1| unknown [Lotus japonicus]
Length = 111
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
++ +GP E +C C++D +Y +Q+RSADE TIF+ C
Sbjct: 60 DMKNGPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWC 99
>gi|70989655|ref|XP_749677.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Aspergillus
fumigatus Af293]
gi|66847308|gb|EAL87639.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Aspergillus fumigatus Af293]
gi|159129084|gb|EDP54198.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Aspergillus fumigatus A1163]
Length = 121
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
Query: 13 FCSKCGTILPLFDFKGD-VKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC+ CG +LP + GD K VC G + + + P+ + + N F +
Sbjct: 9 FCTDCGNLLP--ESTGDPTKILVCDVC-GARNKDTV---PNTII---SESKPNAFPSTLR 59
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
++ V+ +DK A + + C RC M + T+QLRSADEG T+F+
Sbjct: 60 AKRSA-------VQTLTAEDKRTEA---LTQHTCARCGRKEMYFTTVQLRSADEGSTVFY 109
Query: 132 TC 133
TC
Sbjct: 110 TC 111
>gi|257389226|ref|YP_003178999.1| transcription termination factor Tfs [Halomicrobium mukohataei DSM
12286]
gi|257171533|gb|ACV49292.1| transcription termination factor Tfs [Halomicrobium mukohataei DSM
12286]
Length = 107
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 28/125 (22%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC CG+++ K + +VC G+ + D + +G +
Sbjct: 2 EFCDDCGSMM-----KAEDGVWVC----GSCGAERARDAADESSMVTTQGQEESEIVDTS 52
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
E++AE GP + C C ND + Q+R+ADE +T FF
Sbjct: 53 EVEAEDM-------------------GPTTDAHCPECGNDRAFWEMKQIRAADESETRFF 93
Query: 132 TCTKC 136
TCT+C
Sbjct: 94 TCTEC 98
>gi|401827442|ref|XP_003887813.1| DNA-directed RNA polymerase subunit M [Encephalitozoon hellem ATCC
50504]
gi|392998820|gb|AFM98832.1| DNA-directed RNA polymerase subunit M [Encephalitozoon hellem ATCC
50504]
Length = 99
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 85 EKEKQKDK-TEIAD--GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
E E Q+D E D G ++ +C C ++ M Y T QLRS DEGQT+F++C
Sbjct: 38 EVEVQRDSHVEAIDVSGAKIKHRCPACGSEEMMYNTAQLRSTDEGQTVFYSC 89
>gi|219113843|ref|XP_002186505.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583355|gb|ACI65975.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 85
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+E C +C++ + Y T+QLRS DEGQT+F+ C C
Sbjct: 42 IEEPCIKCSHPEVGYYTVQLRSVDEGQTVFYECPNC 77
>gi|223995705|ref|XP_002287526.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976642|gb|EED94969.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 119
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+VE C +C + + T+QLRS DEGQT+F+ C KC
Sbjct: 75 VVEEPCVKCGAGEVGFYTVQLRSVDEGQTVFYECPKC 111
>gi|298675051|ref|YP_003726801.1| transcription termination factor Tfs [Methanohalobium evestigatum
Z-7303]
gi|298288039|gb|ADI74005.1| transcription termination factor Tfs [Methanohalobium evestigatum
Z-7303]
Length = 103
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 33/126 (26%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC KC +++ F +KC C G+ G + F++ E
Sbjct: 2 EFCPKCKSLM--FPVDNSMKCRKCGHIKGS-------------------GSSDTFVSRTE 40
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADG-PIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+ E T+ + E+ G P E KC+ C + + QLRSADE +T F
Sbjct: 41 KENREVTVL-----------EGEVDQGLPTTEAKCQECGHTVAYWWLRQLRSADESETRF 89
Query: 131 FTCTKC 136
F CTKC
Sbjct: 90 FKCTKC 95
>gi|323453029|gb|EGB08901.1| hypothetical protein AURANDRAFT_25278 [Aureococcus anophagefferens]
Length = 173
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
VE +C C + + + T+Q+RS DEGQT+F+ C KC
Sbjct: 130 VEEECPECGHPVLEFYTMQMRSVDEGQTVFYECLKC 165
>gi|307352937|ref|YP_003893988.1| transcription termination factor Tfs [Methanoplanus petrolearius
DSM 11571]
gi|307156170|gb|ADN35550.1| transcription termination factor Tfs [Methanoplanus petrolearius
DSM 11571]
Length = 104
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 90 KDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+D EIA P +C C +DT + QLRSADE + FF C KC
Sbjct: 50 EDTEEIATLPTTNVRCPECGHDTAYWWLRQLRSADESEVRFFKCVKC 96
>gi|295670029|ref|XP_002795562.1| DNA-directed RNA polymerase I subunit RPA12 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226284647|gb|EEH40213.1| DNA-directed RNA polymerase I subunit RPA12 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 124
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
I C C M Y TLQ+RSADEG T+F+TC C
Sbjct: 78 IASESCPECGRPEMRYYTLQIRSADEGTTVFYTCEGC 114
>gi|312137238|ref|YP_004004575.1| DNA-directed RNA polymerase, subunit m [Methanothermus fervidus DSM
2088]
gi|311224957|gb|ADP77813.1| DNA-directed RNA polymerase, subunit M [Methanothermus fervidus DSM
2088]
Length = 105
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K+E+ P V+++C +C N+ + Q R ADE +T FF CTKC
Sbjct: 53 KSEVKTMPTVKKECPKCGNNEAYWWLQQTRRADESETRFFRCTKC 97
>gi|448609204|ref|ZP_21660483.1| DNA-directed RNA polymerase subunit M1 [Haloferax mucosum ATCC
BAA-1512]
gi|445747581|gb|ELZ99037.1| DNA-directed RNA polymerase subunit M1 [Haloferax mucosum ATCC
BAA-1512]
Length = 96
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D EI GP + C +C +D Y Q+RSADE +T FFTC +C
Sbjct: 44 DNAEI--GPTTKAICPKCEHDVARYEMKQIRSADESETRFFTCVEC 87
>gi|225684280|gb|EEH22564.1| DNA-directed RNA polymerase i 13.7 kda polypeptide
[Paracoccidioides brasiliensis Pb03]
Length = 122
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
I C C M Y TLQ+RSADEG T+F+TC C
Sbjct: 78 IASESCPECGRPEMRYYTLQIRSADEGTTVFYTCEGC 114
>gi|335433990|ref|ZP_08558799.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|335438373|ref|ZP_08561120.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|334892322|gb|EGM30558.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|334898216|gb|EGM36331.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
Length = 106
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P E C C ND + Q+RSADE +T FFTCT+C
Sbjct: 60 PTTEAHCPECGNDRAFWEMKQIRSADESETRFFTCTEC 97
>gi|71033475|ref|XP_766379.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353336|gb|EAN34096.1| hypothetical protein TP01_0858 [Theileria parva]
Length = 252
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
V+ C++C +DT Y+T Q RSADEG +I + C KC
Sbjct: 209 VKYNCEKCGHDTHLYSTFQARSADEGMSIMYECIKC 244
>gi|15789670|ref|NP_279494.1| DNA-directed RNA-polymerase subunit M [Halobacterium sp. NRC-1]
gi|169235384|ref|YP_001688584.1| DNA-directed RNA polymerase subunit M1 [Halobacterium salinarum R1]
gi|10580036|gb|AAG18974.1| DNA-directed RNA-polymerase subunit M [Halobacterium sp. NRC-1]
gi|167726450|emb|CAP13235.1| transcription elongation factor TFS [Halobacterium salinarum R1]
Length = 104
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 41/130 (31%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC CG+++ K D + +VC + Q + P
Sbjct: 2 EFCDDCGSMM-----KADDELWVCSSCGHKQPKDP------------------------- 31
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADG-----PIVERKCKRCNNDTMSYATLQLRSADEG 126
+ F E +++ + +++D P C C+ND + Q+RSADE
Sbjct: 32 ------SASFVVTEGQEETEVVDVSDAQDRGLPTTSVVCPDCDNDEAHWYMQQIRSADES 85
Query: 127 QTIFFTCTKC 136
+T FF CT+C
Sbjct: 86 ETRFFICTEC 95
>gi|308161991|gb|EFO64420.1| Transcription factor TFIIS [Giardia lamblia P15]
Length = 346
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 15/91 (16%)
Query: 61 GHFNLFLAVF-EEIKAEYTIHFNTVEKE-------KQKDKTEIADGPIVER-------KC 105
G+ +L +VF + IK + +H N +E E + K + EI ++R +C
Sbjct: 249 GNLDLCASVFMQAIKPQELVHMNIIELEPAECRELRNKAREEIMASVDLKRFVQHTGIQC 308
Query: 106 KRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K+C +T+ Q RSADE TI +TC+ C
Sbjct: 309 KKCKQETVVRLEKQTRSADEATTIEYTCSSC 339
>gi|313126593|ref|YP_004036863.1| DNA-directed RNA polymerase subunit m [Halogeometricum borinquense
DSM 11551]
gi|448286744|ref|ZP_21477969.1| DNA-directed RNA polymerase, subunit m [Halogeometricum borinquense
DSM 11551]
gi|312292958|gb|ADQ67418.1| DNA-directed RNA polymerase, subunit M [Halogeometricum borinquense
DSM 11551]
gi|445574121|gb|ELY28630.1| DNA-directed RNA polymerase, subunit m [Halogeometricum borinquense
DSM 11551]
Length = 107
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D EI GP KC C +D Y Q+RSADE +T FFTC +C
Sbjct: 55 DDAEI--GPTTTVKCPECGHDRARYEMKQIRSADESETRFFTCVEC 98
>gi|121710080|ref|XP_001272656.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Aspergillus clavatus NRRL 1]
gi|119400806|gb|EAW11230.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Aspergillus clavatus NRRL 1]
Length = 147
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 26/125 (20%)
Query: 13 FCSKCGTILPLFDFKGD----VKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLA 68
FC+ CG +LP + GD + C VC G + + + P+ + + N F +
Sbjct: 9 FCTDCGNLLP--ESTGDPTKVLLCDVC----GARNKDTV---PNTIV---SESKPNAFPS 56
Query: 69 VFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQT 128
++ V+ +DK A + + C RC M + T+QLRSADEG T
Sbjct: 57 ALRAKRS-------AVQTLTAEDKRTEA---LTQHTCARCGRKEMYFTTVQLRSADEGST 106
Query: 129 IFFTC 133
+F+TC
Sbjct: 107 VFYTC 111
>gi|296815424|ref|XP_002848049.1| DNA-directed RNA polymerase I subunit RPA12 [Arthroderma otae CBS
113480]
gi|238841074|gb|EEQ30736.1| DNA-directed RNA polymerase I subunit RPA12 [Arthroderma otae CBS
113480]
Length = 123
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
++++ C C M Y TLQLRSADEG T+F+TC
Sbjct: 80 VIQQTCPDCGRTEMRYYTLQLRSADEGSTVFYTC 113
>gi|255948316|ref|XP_002564925.1| Pc22g09130 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591942|emb|CAP98201.1| Pc22g09130 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 121
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 22/123 (17%)
Query: 13 FCSKCGTILPLFDFKGD--VKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC+ CG +L D + C VC GT+ + + P + F
Sbjct: 9 FCTDCGNLLRESTGNADAILHCDVC----GTRNKDTI---PQTTVSESKPSSFP------ 55
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
++A+ + T+ E +K + I++R C C M Y T+QLRSADEG T+F
Sbjct: 56 SSLRAKRSA-VQTLSAEDRKTE------AIIDRTCSECGRKQMFYTTVQLRSADEGSTVF 108
Query: 131 FTC 133
+ C
Sbjct: 109 YRC 111
>gi|374628584|ref|ZP_09700969.1| DNA-directed RNA polymerase, subunit M [Methanoplanus limicola DSM
2279]
gi|373906697|gb|EHQ34801.1| DNA-directed RNA polymerase, subunit M [Methanoplanus limicola DSM
2279]
Length = 104
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
EIA P +C C N+T + QLRSADE + FF CTKC
Sbjct: 54 EIATLPTTAIRCPECGNNTAFWWLRQLRSADESEVRFFKCTKC 96
>gi|225557920|gb|EEH06205.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240273969|gb|EER37487.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
gi|325095646|gb|EGC48956.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 81
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 26/32 (81%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C++C++ ++++ +QLRSADEG TIF+ C KC
Sbjct: 42 CQKCDSKEVTWSEMQLRSADEGSTIFYRCPKC 73
>gi|84998394|ref|XP_953918.1| hypothetical protein [Theileria annulata]
gi|65304916|emb|CAI73241.1| hypothetical protein, conserved [Theileria annulata]
Length = 250
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
V+ C++C +DT Y+T Q RSADEG +I + C KC
Sbjct: 207 VKYNCEKCGHDTHLYSTFQARSADEGMSIMYECIKC 242
>gi|433427067|ref|ZP_20406976.1| DNA-directed RNA polymerase subunit M1 [Haloferax sp. BAB2207]
gi|448291889|ref|ZP_21482563.1| DNA-directed RNA polymerase subunit M1 [Haloferax volcanii DS2]
gi|448541081|ref|ZP_21623912.1| DNA-directed RNA polymerase subunit M1 [Haloferax sp. ATCC BAA-646]
gi|448549466|ref|ZP_21628071.1| DNA-directed RNA polymerase subunit M1 [Haloferax sp. ATCC BAA-645]
gi|448571288|ref|ZP_21639633.1| DNA-directed RNA polymerase subunit M1 [Haloferax lucentense DSM
14919]
gi|448596124|ref|ZP_21653464.1| DNA-directed RNA polymerase subunit M1 [Haloferax alexandrinus JCM
10717]
gi|448603219|ref|ZP_21657040.1| DNA-directed RNA polymerase subunit M1 [Haloferax sulfurifontis
ATCC BAA-897]
gi|448623634|ref|ZP_21669991.1| DNA-directed RNA polymerase subunit M1 [Haloferax denitrificans
ATCC 35960]
gi|432196603|gb|ELK53045.1| DNA-directed RNA polymerase subunit M1 [Haloferax sp. BAB2207]
gi|445573408|gb|ELY27929.1| DNA-directed RNA polymerase subunit M1 [Haloferax volcanii DS2]
gi|445708243|gb|ELZ60083.1| DNA-directed RNA polymerase subunit M1 [Haloferax sp. ATCC BAA-646]
gi|445712514|gb|ELZ64295.1| DNA-directed RNA polymerase subunit M1 [Haloferax sp. ATCC BAA-645]
gi|445722500|gb|ELZ74158.1| DNA-directed RNA polymerase subunit M1 [Haloferax lucentense DSM
14919]
gi|445741812|gb|ELZ93310.1| DNA-directed RNA polymerase subunit M1 [Haloferax alexandrinus JCM
10717]
gi|445746415|gb|ELZ97877.1| DNA-directed RNA polymerase subunit M1 [Haloferax sulfurifontis
ATCC BAA-897]
gi|445752162|gb|EMA03589.1| DNA-directed RNA polymerase subunit M1 [Haloferax denitrificans
ATCC 35960]
Length = 96
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
GP + C +C +D Y Q+RSADE +T FFTC +C
Sbjct: 49 GPTTKAICPKCGHDVARYEMKQIRSADESETRFFTCVEC 87
>gi|325957961|ref|YP_004289427.1| transcription termination factor Tfs [Methanobacterium sp. AL-21]
gi|325329393|gb|ADZ08455.1| transcription termination factor Tfs [Methanobacterium sp. AL-21]
Length = 105
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 55/133 (41%), Gaps = 45/133 (33%)
Query: 12 EFCSKCGTIL-PLFDFKGDV-KCYVCK-TSYGTQEQQPLLLGPDILFLKRFKGHFNLFLA 68
EFC KCG ++ P KGD+ +C C+ T+ T+E
Sbjct: 2 EFCPKCGAVMFP----KGDIFECRNCEHTTKATKESM----------------------- 34
Query: 69 VFEEIKAEYTIHFNTVEKEKQKDKT-----EIADGPIVERKCKRCNNDTMSYATLQLRSA 123
+EY I EK + KD EI P KC +C N S+ +Q R A
Sbjct: 35 ------SEYEIS----EKVESKDSIIVTSDEIQTLPTAVVKCPKCGNKEASWWLIQTRGA 84
Query: 124 DEGQTIFFTCTKC 136
DE +T FF CTKC
Sbjct: 85 DESETRFFRCTKC 97
>gi|402079417|gb|EJT74682.1| hypothetical protein GGTG_08520, partial [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 86
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +E+ C+ C+ + Y TLQ R ADEG T+F+ C KC
Sbjct: 41 PSIEQDCQFCDAKEIRYTTLQTRGADEGSTVFYFCPKC 78
>gi|74025080|ref|XP_829106.1| DNA-directed RNA polymerase [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834492|gb|EAN79994.1| DNA-directed RNA polymerase, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|84619252|emb|CAJ43706.1| RNA polymerase I subunit RPA12 [Trypanosoma brucei brucei]
gi|261335055|emb|CBH18049.1| DNA-directed RNA polymerase, putative [Trypanosoma brucei gambiense
DAL972]
Length = 151
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 19/147 (12%)
Query: 1 MTSEGYFNVESEFCSKCGTILPL--------FDFKGDVKCYVCKTSYGTQEQQPLLLGPD 52
M YF++ S C CG +P G ++C C Q ++P+ PD
Sbjct: 5 MARRDYFSMGSRCCIACGQWIPSEHDMPRSGSAAAGGLQCRRCNV---VQPERPM---PD 58
Query: 53 ILFLKRFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERK--CKRCNN 110
F K + L EI A + +++E+ +++D VE + C++C
Sbjct: 59 --FEKASEVTTAALLFTKAEIDAAWKSVKHSLEEARREDVGVAQTDNRVEEEAFCEKCGV 116
Query: 111 DTMSYA-TLQLRSADEGQTIFFTCTKC 136
Q+RSADEGQT+F+ CT C
Sbjct: 117 PRKCKVFARQIRSADEGQTVFYQCTSC 143
>gi|448615241|ref|ZP_21664166.1| DNA-directed RNA polymerase subunit M1 [Haloferax mediterranei ATCC
33500]
gi|445752505|gb|EMA03928.1| DNA-directed RNA polymerase subunit M1 [Haloferax mediterranei ATCC
33500]
Length = 96
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D EI GP C +C +D Y Q+RSADE +T FFTC +C
Sbjct: 44 DNAEI--GPTTTAICPKCEHDVARYEMKQIRSADESETRFFTCVEC 87
>gi|407918864|gb|EKG12126.1| hypothetical protein MPH_10756 [Macrophomina phaseolina MS6]
Length = 121
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 13 FCSKCGTIL--PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC+ CG +L D K + C VC S + ++ + F +
Sbjct: 9 FCTDCGNLLDGSSGDSKATLVCEVCGASCKDTAAKTIVT----------HSKPSAFPSSL 58
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+ ++E E + Q D T + + C++C + + Y T QLRSADEG T+F
Sbjct: 59 RDKRSEVQT---LTEDDMQTDAT-------IRQTCEKCGREEVRYYTQQLRSADEGSTVF 108
Query: 131 FTC 133
+TC
Sbjct: 109 YTC 111
>gi|448562050|ref|ZP_21635183.1| DNA-directed RNA polymerase subunit M1 [Haloferax prahovense DSM
18310]
gi|448585873|ref|ZP_21648045.1| DNA-directed RNA polymerase subunit M1 [Haloferax gibbonsii ATCC
33959]
gi|445720146|gb|ELZ71823.1| DNA-directed RNA polymerase subunit M1 [Haloferax prahovense DSM
18310]
gi|445725491|gb|ELZ77114.1| DNA-directed RNA polymerase subunit M1 [Haloferax gibbonsii ATCC
33959]
Length = 96
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
GP + C +C +D Y Q+RSADE +T FFTC +C
Sbjct: 49 GPTTKTICPKCGHDVARYEMKQIRSADESETRFFTCVEC 87
>gi|403221216|dbj|BAM39349.1| uncharacterized protein TOT_010000808 [Theileria orientalis strain
Shintoku]
Length = 253
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 69 VFEEIKAEY---TIHFNTVEKEKQKDKTEIADGP-IVERKCKRCNNDTMSYATLQLRSAD 124
+F+E + ++ +IH + + + KT G V+ C++C +D Y+T Q RSAD
Sbjct: 174 IFDESEKQWWKDSIHGSYSSTKLMQAKTANKSGKQTVKYNCEKCGHDVHLYSTFQARSAD 233
Query: 125 EGQTIFFTCTKC 136
EG +I + C KC
Sbjct: 234 EGMSIMYECLKC 245
>gi|389846917|ref|YP_006349156.1| DNA-directed RNA polymerase subunit M1 [Haloferax mediterranei ATCC
33500]
gi|388244223|gb|AFK19169.1| DNA-directed RNA polymerase subunit M1 [Haloferax mediterranei ATCC
33500]
Length = 106
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D EI GP C +C +D Y Q+RSADE +T FFTC +C
Sbjct: 54 DNAEI--GPTTTAICPKCEHDVARYEMKQIRSADESETRFFTCVEC 97
>gi|294495073|ref|YP_003541566.1| DNA-directed RNA polymerase, subunit M [Methanohalophilus mahii DSM
5219]
gi|292666072|gb|ADE35921.1| DNA-directed RNA polymerase, subunit M [Methanohalophilus mahii DSM
5219]
Length = 104
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 32/126 (25%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC KC +++ F GD+KC C +E G + + K + + V E
Sbjct: 2 EFCPKCKSMM--FPSDGDLKCRKCGYEKSREE------GAETMVSKTKRDEREV--TVLE 51
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADG-PIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
E + +G P +C C N+ + QLRSADE +T F
Sbjct: 52 E---------------------NVDEGLPTTLAQCPECGNNKAYWWMRQLRSADESETRF 90
Query: 131 FTCTKC 136
F CTKC
Sbjct: 91 FKCTKC 96
>gi|448678561|ref|ZP_21689568.1| DNA-directed RNA-polymerase subunit M [Haloarcula argentinensis DSM
12282]
gi|445772548|gb|EMA23593.1| DNA-directed RNA-polymerase subunit M [Haloarcula argentinensis DSM
12282]
Length = 108
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 33/128 (25%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC +CG+++ D + +VC G A
Sbjct: 2 EFCDECGSMMKTDDER-----WVC-------------------------GSCGYEKARNA 31
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIAD---GPIVERKCKRCNNDTMSYATLQLRSADEGQT 128
E + E + E+ + D +E+ GP +C C N+ Y Q+R+ADE +T
Sbjct: 32 ETEQEMAVTTQGQEESEVVDTSEVDAEDMGPTTGARCPECGNERAFYEMKQIRAADESET 91
Query: 129 IFFTCTKC 136
FFTCT+C
Sbjct: 92 RFFTCTEC 99
>gi|402470252|gb|EJW04596.1| hypothetical protein EDEG_01180 [Edhazardia aedis USNM 41457]
Length = 99
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 96 ADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+ G + KC C + M Y T+Q RSADEGQT+F+ C
Sbjct: 52 SKGAKIRYKCNNCGAEEMYYYTMQTRSADEGQTVFYEC 89
>gi|296808049|ref|XP_002844363.1| SpRPA12 [Arthroderma otae CBS 113480]
gi|238843846|gb|EEQ33508.1| SpRPA12 [Arthroderma otae CBS 113480]
Length = 115
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++ C++C+ ++++ +QLRSADEG TIF+ C+KC
Sbjct: 72 IQVDCEKCDAKEVTWSEMQLRSADEGSTIFYRCSKC 107
>gi|292655539|ref|YP_003535436.1| DNA-directed RNA polymerase subunit M1 [Haloferax volcanii DS2]
gi|448555421|ref|ZP_21631461.1| DNA-directed RNA polymerase subunit M1 [Haloferax sp. ATCC BAA-644]
gi|291371717|gb|ADE03944.1| DNA-directed RNA polymerase subunit M1 [Haloferax volcanii DS2]
gi|445718166|gb|ELZ69869.1| DNA-directed RNA polymerase subunit M1 [Haloferax sp. ATCC BAA-644]
Length = 106
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
GP + C +C +D Y Q+RSADE +T FFTC +C
Sbjct: 59 GPTTKAICPKCGHDVARYEMKQIRSADESETRFFTCVEC 97
>gi|55377133|ref|YP_134983.1| DNA-directed RNA-polymerase subunit M [Haloarcula marismortui ATCC
43049]
gi|55229858|gb|AAV45277.1| DNA-directed RNA-polymerase subunit M [Haloarcula marismortui ATCC
43049]
Length = 108
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 33/128 (25%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC +CG+++ D + +VC G A
Sbjct: 2 EFCDECGSMMKTDDER-----WVC-------------------------GSCGYEKARNA 31
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIAD---GPIVERKCKRCNNDTMSYATLQLRSADEGQT 128
E + E + E+ + D +E+ GP +C C N+ Y Q+R+ADE +T
Sbjct: 32 EAEQEMAVTTQGQEESEVVDTSEVDAEDMGPTTGARCPECGNERAFYEMKQIRAADESET 91
Query: 129 IFFTCTKC 136
FFTCT+C
Sbjct: 92 RFFTCTEC 99
>gi|209881247|ref|XP_002142062.1| DNA-directed RNA polymerase III subunit RPC10 [Cryptosporidium
muris RN66]
gi|209557668|gb|EEA07713.1| DNA-directed RNA polymerase III subunit RPC10, putative
[Cryptosporidium muris RN66]
Length = 106
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 86 KEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+E Q D EIA ++ C +C+N + LQ+RSADE T F+TC KC
Sbjct: 50 EEAQGDMNEIASAKVMAV-CPKCSNTEAYFFQLQIRSADEPMTSFYTCVKC 99
>gi|356577277|ref|XP_003556754.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Glycine max]
Length = 76
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
V +KC++C + +Y T Q+RS D+GQT F+ CT C
Sbjct: 34 VSKKCEKCGHGEATYYTRQMRSTDKGQTTFYACTGC 69
>gi|391863881|gb|EIT73180.1| RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12
[Aspergillus oryzae 3.042]
Length = 159
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+ + C RC M + T+QLRSADEG T+F+TC
Sbjct: 78 LTQHTCARCGRKEMYFTTVQLRSADEGSTVFYTC 111
>gi|356523632|ref|XP_003530441.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA12-like [Glycine max]
Length = 90
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
V +KC++C + +Y T +RS+D+GQT F+TCT C
Sbjct: 48 VSKKCEKCGHGEATYYTRXMRSSDKGQTTFYTCTGC 83
>gi|240103105|ref|YP_002959414.1| Transcription elongation factor S (TFS_arch) [Thermococcus
gammatolerans EJ3]
gi|239910659|gb|ACS33550.1| Transcription elongation factor S (TFS_arch) [Thermococcus
gammatolerans EJ3]
Length = 110
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C +C NDT + LQ R+ DE TIF+ CTKC
Sbjct: 65 PTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKCTKC 102
>gi|124800991|ref|XP_001349576.1| transcription factor, putative [Plasmodium falciparum 3D7]
gi|3845145|gb|AAC71847.1| transcription factor, putative [Plasmodium falciparum 3D7]
Length = 106
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C ND + TLQ+RSADE TIF+ C KC
Sbjct: 69 CPKCTNDEAYFYTLQIRSADEPSTIFYICVKC 100
>gi|223478880|ref|YP_002583424.1| transcription factor S [Thermococcus sp. AM4]
gi|214034106|gb|EEB74932.1| Transcription factor S [Thermococcus sp. AM4]
Length = 110
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C +C NDT + LQ R+ DE TIF+ CTKC
Sbjct: 65 PTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKCTKC 102
>gi|378755280|gb|EHY65307.1| DNA-directed RNA polymerase I subunit RPA12 [Nematocida sp. 1
ERTm2]
Length = 94
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
E G ++ +C C ++ + Y T+QLRSADEGQT+F+ C
Sbjct: 45 ERHKGAKIKEECPDCKSEYLYYYTMQLRSADEGQTVFYEC 84
>gi|399218133|emb|CCF75020.1| unnamed protein product [Babesia microti strain RI]
Length = 221
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
V+ C++C N+ Y+T Q RSADEG TI + CT C
Sbjct: 178 VKEICQKCGNEEQYYSTFQARSADEGMTIMYECTSC 213
>gi|322369843|ref|ZP_08044405.1| putative DNA-directed RNA polymerase subunit M1 [Haladaptatus
paucihalophilus DX253]
gi|320550179|gb|EFW91831.1| putative DNA-directed RNA polymerase subunit M1 [Haladaptatus
paucihalophilus DX253]
Length = 103
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P E +C C+ND + Q+RSADE +T FF CT+C
Sbjct: 57 PTTEVQCPNCDNDQAYWYLQQIRSADESETRFFVCTEC 94
>gi|448640595|ref|ZP_21677498.1| DNA-directed RNA-polymerase subunit M [Haloarcula sinaiiensis ATCC
33800]
gi|448651376|ref|ZP_21680445.1| DNA-directed RNA-polymerase subunit M [Haloarcula californiae ATCC
33799]
gi|445761905|gb|EMA13144.1| DNA-directed RNA-polymerase subunit M [Haloarcula sinaiiensis ATCC
33800]
gi|445770903|gb|EMA21961.1| DNA-directed RNA-polymerase subunit M [Haloarcula californiae ATCC
33799]
Length = 99
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
GP +C C N+ Y Q+R+ADE +T FFTCT+C
Sbjct: 52 GPTTGARCPECGNERAFYEMKQIRAADESETRFFTCTEC 90
>gi|344211251|ref|YP_004795571.1| DNA-directed RNA polymerase subunit M [Haloarcula hispanica ATCC
33960]
gi|448630345|ref|ZP_21673000.1| DNA-directed RNA polymerase subunit M [Haloarcula vallismortis ATCC
29715]
gi|448667349|ref|ZP_21685891.1| DNA-directed RNA polymerase subunit M [Haloarcula amylolytica JCM
13557]
gi|448688986|ref|ZP_21694723.1| DNA-directed RNA polymerase subunit M [Haloarcula japonica DSM
6131]
gi|343782606|gb|AEM56583.1| DNA-directed RNA polymerase subunit M [Haloarcula hispanica ATCC
33960]
gi|445756268|gb|EMA07643.1| DNA-directed RNA polymerase subunit M [Haloarcula vallismortis ATCC
29715]
gi|445770384|gb|EMA21448.1| DNA-directed RNA polymerase subunit M [Haloarcula amylolytica JCM
13557]
gi|445778856|gb|EMA29798.1| DNA-directed RNA polymerase subunit M [Haloarcula japonica DSM
6131]
Length = 99
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
GP +C C N+ Y Q+R+ADE +T FFTCT+C
Sbjct: 52 GPTTGARCPECGNERAFYEMKQIRAADESETRFFTCTEC 90
>gi|310795576|gb|EFQ31037.1| transcription factor S-II [Glomerella graminicola M1.001]
Length = 122
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
D+ ++ ++ C +C + + + +QLRSADEG TIFFTC
Sbjct: 70 DRANVSTEATIKETCPKCEREEVRFTAVQLRSADEGSTIFFTC 112
>gi|212223973|ref|YP_002307209.1| DNA-directed RNA polymerase subunit M [Thermococcus onnurineus NA1]
gi|212008930|gb|ACJ16312.1| DNA-directed RNA polymerase subunit M [Thermococcus onnurineus NA1]
Length = 110
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++A P V+ C +C ND + LQ R+ DE TIF+ CTKC
Sbjct: 60 DLATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYKCTKC 102
>gi|336477592|ref|YP_004616733.1| transcription termination factor Tfs [Methanosalsum zhilinae DSM
4017]
gi|335930973|gb|AEH61514.1| transcription termination factor Tfs [Methanosalsum zhilinae DSM
4017]
Length = 104
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +C C N+T + QLRSADE +T FF CTKC
Sbjct: 59 PTTSVRCPECGNNTAYWWLRQLRSADESETRFFKCTKC 96
>gi|257051319|ref|YP_003129152.1| transcription termination factor Tfs [Halorhabdus utahensis DSM
12940]
gi|256690082|gb|ACV10419.1| transcription termination factor Tfs [Halorhabdus utahensis DSM
12940]
Length = 106
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P E +C C+ND + Q+R+ADE +T FFTCT+C
Sbjct: 60 PTTEIQCVECDNDRAYWELKQIRAADESETRFFTCTEC 97
>gi|451927375|gb|AGF85253.1| transcription factor [Moumouvirus goulette]
Length = 170
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 54 LFLKRFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERK-CKRCNNDT 112
L L+ +NL +E+ + I + K+ + ++ D P VE K C+ C N
Sbjct: 82 LILENKYNAYNLAFLKPDELNKDNWIK---IISRKKTTEEKLNDLPAVEWKPCRACKNTE 138
Query: 113 MSYATLQLRSADEGQTIFFTCTKC 136
Y LQ RSADE T F+TC KC
Sbjct: 139 YFYRQLQTRSADEPMTTFYTCKKC 162
>gi|358391613|gb|EHK41017.1| hypothetical protein TRIATDRAFT_31399 [Trichoderma atroviride IMI
206040]
Length = 117
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P C +C + Y TLQLRSADEG T+F+ C+ C
Sbjct: 71 PTTRETCPKCGAKEVRYTTLQLRSADEGTTLFYYCSDC 108
>gi|409095443|ref|ZP_11215467.1| transcription elongation factor S (TFS_arch) [Thermococcus zilligii
AN1]
Length = 110
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 32/128 (25%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC KCG ++ L D + V +VC R GH F EE
Sbjct: 3 FCPKCGNLM-LPDRRRKV--WVC----------------------RVCGHEEPFE---EE 34
Query: 73 IKAEYTIHFNTVEKEKQKD----KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQT 128
E T VE + ++ + ++ P + C +C NDT + LQ R+ DE T
Sbjct: 35 KDREKTRITQKVEHKPNEEIVVIEQDVKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPST 94
Query: 129 IFFTCTKC 136
IF+ CT+C
Sbjct: 95 IFYRCTRC 102
>gi|392572001|gb|EIW65173.1| DNA-directed RNA polymerase I kDa polypeptide [Trametes versicolor
FP-101664 SS1]
Length = 126
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 51/125 (40%), Gaps = 20/125 (16%)
Query: 13 FCSKCGTILPLF-DFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC CGT+L L D + V C C +P +I + K H + F +
Sbjct: 13 FCPDCGTLLNLPQDGQFQVTCEQCA------HVEPASSYENIEIIT--KSHPDAFPSALR 64
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
+ + K + K+ D V KC C + QLRSADEG TIF+
Sbjct: 65 QKR-----------KTQTKEHAANEDLLKVTEKCPECGHMEAYSKEAQLRSADEGSTIFY 113
Query: 132 TCTKC 136
TC KC
Sbjct: 114 TCVKC 118
>gi|396081936|gb|AFN83550.1| DNA-directed RNA polymerase I subunit M [Encephalitozoon romaleae
SJ-2008]
Length = 99
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 96 ADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
G ++ +C C + M Y T+Q+RS DEGQT+F++C
Sbjct: 52 VSGAKIKHRCPACGAEEMMYNTVQVRSTDEGQTVFYSC 89
>gi|159162918|pdb|1QYP|A Chain A, Thermococcus Celer Rpb9, Nmr, 25 Structures
Length = 57
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C +C NDT + +Q R+ DE TIF+ CTKC
Sbjct: 12 PTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKC 49
>gi|169769376|ref|XP_001819158.1| DNA-directed RNA polymerase I polypeptide [Aspergillus oryzae
RIB40]
gi|238501844|ref|XP_002382156.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Aspergillus flavus NRRL3357]
gi|83767016|dbj|BAE57156.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692393|gb|EED48740.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Aspergillus flavus NRRL3357]
Length = 121
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+ + C RC M + T+QLRSADEG T+F+TC
Sbjct: 78 LTQHTCARCGRKEMYFTTVQLRSADEGSTVFYTC 111
>gi|390594980|gb|EIN04388.1| DNA-directed RNA polymerase I kDa polypeptide [Punctularia
strigosozonata HHB-11173 SS5]
Length = 126
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 32/143 (22%)
Query: 1 MTSEGYFNVESEFCSKCGTILPLFDFKGD---VKCYVCKTSYGTQEQQPLLLGPDILFLK 57
MTS+ + FC CGT+L L +GD VKC C G +E
Sbjct: 1 MTSQAHKIGSLLFCPDCGTLLDLP--RGDEPSVKCDQC----GREEPS------------ 42
Query: 58 RFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPI----VERKCKRCNNDTM 113
+ N+ + A + ++K+K +T+ G V +C C +D
Sbjct: 43 --SSYDNIEIVTRSNPDA-----LPSALRQKRKTQTKAHSGESALLKVTERCPSCGHDEA 95
Query: 114 SYATLQLRSADEGQTIFFTCTKC 136
+QLRS DEG TI +TC C
Sbjct: 96 YSKEMQLRSVDEGSTILYTCVSC 118
>gi|288559429|ref|YP_003422915.1| transcription factor S Tfs2 [Methanobrevibacter ruminantium M1]
gi|288542139|gb|ADC46023.1| transcription factor S Tfs2 [Methanobrevibacter ruminantium M1]
Length = 131
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +D SY LQ RSADE T FFTC KC
Sbjct: 92 CPKCGHDRASYELLQTRSADEAPTRFFTCEKC 123
>gi|356927754|gb|AET42544.1| transcription factor S-II family protein [Emiliania huxleyi virus
202]
Length = 168
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
CK+C++ + A Q RSADEG T+FFTC KC
Sbjct: 130 CKKCSSSEILMAMAQTRSADEGTTMFFTCVKC 161
>gi|341581249|ref|YP_004761741.1| Transcription elongation factor S (TFS_arch) [Thermococcus sp.
4557]
gi|340808907|gb|AEK72064.1| Transcription elongation factor S (TFS_arch) [Thermococcus sp.
4557]
Length = 110
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C +C NDT + +Q R+ DE TIF+ CTKC
Sbjct: 65 PTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKC 102
>gi|57640468|ref|YP_182946.1| DNA-directed RNA polymerase subunit M [Thermococcus kodakarensis
KOD1]
gi|57158792|dbj|BAD84722.1| archaeal transcription factor S [Thermococcus kodakarensis KOD1]
Length = 110
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C +C NDT + +Q R+ DE TIF+ CTKC
Sbjct: 65 PTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKC 102
>gi|452837073|gb|EME39016.1| hypothetical protein DOTSEDRAFT_139985 [Dothistroma septosporum
NZE10]
Length = 122
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 22/126 (17%)
Query: 13 FCSKCGTILP-LFDFKGDVKCYVCKTSYGTQ-EQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC+ CG +LP + + C VC TS + + + F + + A
Sbjct: 9 FCTDCGDLLPRARPSQRTINCDVCGTSNENKWPHKTTSVSKPSAFPSQLRQRLQ---AGL 65
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+E+ + T+ G ++++ C++C+ + Y LQLRSADEG T+
Sbjct: 66 QEVSS-----------------TDKQQGKVIQQACEKCSALELRYFELQLRSADEGTTLL 108
Query: 131 FTCTKC 136
+ C +C
Sbjct: 109 YHCLQC 114
>gi|340345736|ref|ZP_08668868.1| Transcription termination factor Tfs [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520877|gb|EGP94600.1| Transcription termination factor Tfs [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 103
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 56 LKRFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADG------PIVERKCKRCN 109
+K KG L ++ T+ TV +E++ +A+ P ++ +C++C
Sbjct: 9 VKLKKGDSGLQCPKCNYVEGNETMQTKTVVEEEESQFNVLAENEGTETLPTIKIECEKCG 68
Query: 110 NDTMSYATLQLRSADEGQTIFFTCTKC 136
ND + LQ RSADE T F+ C+KC
Sbjct: 69 NDEAVWWMLQTRSADEPTTQFYRCSKC 95
>gi|390962022|ref|YP_006425856.1| transcription elongation factor S (TFS_arch) [Thermococcus sp. CL1]
gi|390520330|gb|AFL96062.1| transcription elongation factor S (TFS_arch) [Thermococcus sp. CL1]
Length = 110
Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C +C NDT + +Q R+ DE TIF+ CTKC
Sbjct: 65 PTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKC 102
>gi|358383010|gb|EHK20679.1| hypothetical protein TRIVIDRAFT_49675 [Trichoderma virens Gv29-8]
Length = 136
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P E C++C + Y LQLRSADEG T+F+ C +C
Sbjct: 71 PKTEETCRKCGAREVRYTALQLRSADEGTTLFYYCPEC 108
>gi|3024569|sp|Q56254.1|RPOM_THECE RecName: Full=DNA-directed RNA polymerase subunit M
gi|443693|gb|AAA72052.1| RNA polymerase [Thermococcus celer]
Length = 110
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C +C NDT + +Q R+ DE TIF+ CTKC
Sbjct: 65 PTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKC 102
>gi|66735410|gb|AAY53887.1| DNA-dependent RNA polymerase subunit M [Thermococcus thioreducens]
Length = 110
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C +C NDT + +Q R+ DE TIF+ CTKC
Sbjct: 65 PTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYRCTKC 102
>gi|145245255|ref|XP_001394895.1| DNA-directed RNA polymerase I polypeptide [Aspergillus niger CBS
513.88]
gi|134079593|emb|CAK40810.1| unnamed protein product [Aspergillus niger]
gi|350631605|gb|EHA19976.1| hypothetical protein ASPNIDRAFT_39394 [Aspergillus niger ATCC 1015]
Length = 121
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+ + C +C M Y T+QLRSADEG T+F+TC
Sbjct: 78 LTQHTCIKCGRKEMYYTTVQLRSADEGSTVFYTC 111
>gi|428163567|gb|EKX32631.1| hypothetical protein GUITHDRAFT_82143, partial [Guillardia theta
CCMP2712]
Length = 49
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +E KC C Y + Q+RS DEGQT FF C +C
Sbjct: 5 PQMEEKCDECGYTKAYYWSAQVRSMDEGQTTFFECVRC 42
>gi|441432414|ref|YP_007354456.1| TFII-like transcription factor [Acanthamoeba polyphaga moumouvirus]
gi|371944878|gb|AEX62699.1| transcription factor S-II-related protein [Moumouvirus Monve]
gi|440383494|gb|AGC02020.1| TFII-like transcription factor [Acanthamoeba polyphaga moumouvirus]
Length = 170
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 94 EIADGPIVERK-CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++ D P VE K C+ C N Y LQ RSADE T F+TC KC
Sbjct: 119 KLNDLPAVEWKPCRACKNTEYFYRQLQTRSADEPMTTFYTCKKC 162
>gi|435850668|ref|YP_007312254.1| transcription factor S, archaeal [Methanomethylovorans hollandica
DSM 15978]
gi|433661298|gb|AGB48724.1| transcription factor S, archaeal [Methanomethylovorans hollandica
DSM 15978]
Length = 104
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 73 IKAEYTIHFNTVEKEKQKDKT-EIADG------PIVERKCKRCNNDTMSYATLQLRSADE 125
+K + + V K ++KD+ + +G P +C C ++ + QLRSADE
Sbjct: 26 VKGAEGVSDDLVSKSERKDRVVTVLEGNFDQGLPTTSTRCPECGHNVAYWWLRQLRSADE 85
Query: 126 GQTIFFTCTKC 136
+T FF CTKC
Sbjct: 86 SETRFFKCTKC 96
>gi|399574716|ref|ZP_10768475.1| hypothetical protein HSB1_05140 [Halogranum salarium B-1]
gi|399240548|gb|EJN61473.1| hypothetical protein HSB1_05140 [Halogranum salarium B-1]
Length = 97
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 83 TVEKEKQKDKTEIADG-----PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
T + ++Q + +++D P + C +C ND + Q+RSADE +T FF CT+C
Sbjct: 30 TTQGQEQSEIVDVSDAEDKGLPTTKVHCPKCGNDRAYWYMQQIRSADESETRFFVCTEC 88
>gi|8778992|gb|AAF79907.1|AC022472_16 Contains a weak similarity to transcription elongation factor S-II
from Drosophila melanogaster gi|135660 and contains a
transcription factor S-II domain PF|01096 [Arabidopsis
thaliana]
Length = 122
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+++ C++C + + Y T Q RSADEGQT ++TC C
Sbjct: 80 IKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNC 115
>gi|358384607|gb|EHK22204.1| hypothetical protein TRIVIDRAFT_60923 [Trichoderma virens Gv29-8]
Length = 122
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 13 FCSKCGTILPLFDF--KGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC+ CG +LP + + C C G I+ K F FL
Sbjct: 9 FCTDCGNLLPATKGTEQNVLSCECCSAENKD-------TGAKIIVTKSKPSDFPSFL--- 58
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+ + VEK ++ V +C C + + Y T+QLRSADEG T+
Sbjct: 59 ---RQKLQSSVQAVEKHTLNTES------TVRERCPNCGREEVKYTTVQLRSADEGSTVI 109
Query: 131 FTC 133
+ C
Sbjct: 110 YNC 112
>gi|354611910|ref|ZP_09029862.1| transcription termination factor Tfs [Halobacterium sp. DL1]
gi|353191488|gb|EHB56994.1| transcription termination factor Tfs [Halobacterium sp. DL1]
Length = 104
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 41/130 (31%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC +CG+++ K D +VC + Q + P
Sbjct: 2 EFCDECGSMM-----KADDGLWVCGSCANKQAKDP------------------------- 31
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADG-----PIVERKCKRCNNDTMSYATLQLRSADEG 126
A Y I E +++ + +++D P C C ND + Q+RSADE
Sbjct: 32 --DASYVI----TEGQEETEIVDVSDAQDKGLPKTTVVCPSCENDKAHWYMQQIRSADES 85
Query: 127 QTIFFTCTKC 136
+T FF CT+C
Sbjct: 86 ETRFFICTEC 95
>gi|159113501|ref|XP_001706977.1| Transcription factor TFIIS [Giardia lamblia ATCC 50803]
gi|157435078|gb|EDO79303.1| Transcription factor TFIIS [Giardia lamblia ATCC 50803]
Length = 346
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 15/91 (16%)
Query: 61 GHFNLFLAVFEE-IKAEYTIHFNTVEKE-------KQKDKTEIADGPIVER-------KC 105
G+ +L +VF + IK + +H + +E E + K + EI ++R +C
Sbjct: 249 GNLDLCASVFMQVIKPQELVHMSVIELEPAECRELRNKAREEIMASVDLKRFVQHTGIQC 308
Query: 106 KRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K+C +T+ Q RSADE TI +TC+ C
Sbjct: 309 KKCKQETVVRLEKQTRSADEATTIEYTCSSC 339
>gi|414872417|tpg|DAA50974.1| TPA: hypothetical protein ZEAMMB73_892272 [Zea mays]
Length = 115
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIAD----GPIVERKCKRCNNDTMSYATLQLRSADEG 126
+EI+ + + T E ++ KT+ D P+ + C +C++ + +Q+RSADEG
Sbjct: 39 KEIEGKEIQYTMTAEDIRRGLKTQTEDVVGQRPVTNKACPKCDHPKAEFYNIQMRSADEG 98
Query: 127 QTIFFTCTKC 136
+T F+ C C
Sbjct: 99 ETTFYMCKGC 108
>gi|448727240|ref|ZP_21709607.1| DNA-directed RNA polymerase subunit M1 [Halococcus morrhuae DSM
1307]
gi|445791665|gb|EMA42301.1| DNA-directed RNA polymerase subunit M1 [Halococcus morrhuae DSM
1307]
Length = 106
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P E C C ND + Q+RSADE +T FF CT+C
Sbjct: 60 PTTEVHCSECGNDEAYWYMQQIRSADESETRFFVCTEC 97
>gi|161529264|ref|YP_001583090.1| transcription termination factor Tfs [Nitrosopumilus maritimus
SCM1]
gi|160340565|gb|ABX13652.1| transcription termination factor Tfs [Nitrosopumilus maritimus
SCM1]
Length = 105
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 83 TVEKEKQKDKTEIADG-------PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTK 135
TVE E+Q++ +G P ++ +C++C +D + LQ RSADE T F+ CTK
Sbjct: 37 TVETEEQEESILAFEGNEGEESHPTIKIECEKCGHDEAIWWMLQTRSADEPTTQFYRCTK 96
Query: 136 C 136
C
Sbjct: 97 C 97
>gi|448575682|ref|ZP_21641962.1| DNA-directed RNA polymerase subunit M1 [Haloferax larsenii JCM
13917]
gi|448590957|ref|ZP_21650722.1| DNA-directed RNA polymerase subunit M1 [Haloferax elongans ATCC
BAA-1513]
gi|445730623|gb|ELZ82211.1| DNA-directed RNA polymerase subunit M1 [Haloferax larsenii JCM
13917]
gi|445734453|gb|ELZ86012.1| DNA-directed RNA polymerase subunit M1 [Haloferax elongans ATCC
BAA-1513]
Length = 106
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
GP C C +D Y Q+RSADE +T FFTC +C
Sbjct: 59 GPTTTAICPECGHDVARYEMKQIRSADESETRFFTCVEC 97
>gi|400595463|gb|EJP63264.1| transcription factor S-II [Beauveria bassiana ARSEF 2860]
Length = 122
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 27/126 (21%)
Query: 13 FCSKCGTILPLFDFKGD----VKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLA 68
FC+ CG +LP KG +KC C G + Q G + F FL
Sbjct: 9 FCTDCGNLLP--STKGTDRNMLKCECC----GAENQD---TGARTTLTQSKPSDFPSFL- 58
Query: 69 VFEEIKAEYTIHFNTVEKEK-QKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQ 127
+ + VE+ Q D T V C +C + + Y +QLRSADEG
Sbjct: 59 -----RQKLQSSVQAVERRNIQTDNT-------VNETCPKCGREEVRYTNVQLRSADEGS 106
Query: 128 TIFFTC 133
T+F+ C
Sbjct: 107 TLFYMC 112
>gi|380473596|emb|CCF46211.1| transcription factor S-II [Colletotrichum higginsianum]
Length = 122
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
D+ + + C +C + + + +QLRSADEG TIFFTC
Sbjct: 70 DRANVNTEATIRETCPKCGREEVRFTAVQLRSADEGSTIFFTC 112
>gi|84490311|ref|YP_448543.1| RpoM1 [Methanosphaera stadtmanae DSM 3091]
gi|84373630|gb|ABC57900.1| RpoM1 [Methanosphaera stadtmanae DSM 3091]
Length = 105
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 68 AVFEEIKAEYTIHFNTVEKEKQKDKTEIADG-----PIVERKCKRCNNDTMSYATLQLRS 122
V EE K +Y + EK ++D + DG P ++ C +C N + Q RS
Sbjct: 28 GVTEESKKQYEV----AEKVDKEDTVIVTDGNVKTLPTIKVICPKCGNKLAFWWLQQTRS 83
Query: 123 ADEGQTIFFTCTKC 136
ADE +T FF CT+C
Sbjct: 84 ADESETRFFRCTEC 97
>gi|333988479|ref|YP_004521086.1| transcription termination factor Tfs [Methanobacterium sp. SWAN-1]
gi|333826623|gb|AEG19285.1| transcription termination factor Tfs [Methanobacterium sp. SWAN-1]
Length = 105
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 31/126 (24%)
Query: 12 EFCSKCGTIL-PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
EFC KCGT++ P +GD C+ CK G +E DI K + + V
Sbjct: 2 EFCPKCGTVMFP----QGD--CFECKKC-GYKE--------DIT-----KESMSEY-KVS 40
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
E++KA+ +I F + +I P + C +C N S+ Q R ADE +T F
Sbjct: 41 EKVKAKESIIFTS---------DDIQTLPTTKAICPKCKNKEASWWLQQTRRADESETRF 91
Query: 131 FTCTKC 136
CTKC
Sbjct: 92 LRCTKC 97
>gi|448350560|ref|ZP_21539372.1| transcription termination factor Tfs [Natrialba taiwanensis DSM
12281]
gi|445636129|gb|ELY89292.1| transcription termination factor Tfs [Natrialba taiwanensis DSM
12281]
Length = 102
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + KC C ND + Q+RSADE +T FF CT+C
Sbjct: 56 PETDAKCPECGNDRAYWYMQQIRSADESETRFFICTEC 93
>gi|452208385|ref|YP_007488507.1| transcription elongation factor TFS [Natronomonas moolapensis
8.8.11]
gi|452084485|emb|CCQ37832.1| transcription elongation factor TFS [Natronomonas moolapensis
8.8.11]
Length = 108
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 91 DKTEIAD---GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D +E+ D GP C C +D Y Q+R+ADE +T FFTC +C
Sbjct: 51 DMSEVDDAEIGPTTTVNCPNCGHDRARYEMKQIRAADESETRFFTCVEC 99
>gi|448363717|ref|ZP_21552313.1| transcription termination factor Tfs [Natrialba asiatica DSM 12278]
gi|445645599|gb|ELY98599.1| transcription termination factor Tfs [Natrialba asiatica DSM 12278]
Length = 102
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + KC C ND + Q+RSADE +T FF CT+C
Sbjct: 56 PETDAKCPECGNDRAYWYMQQIRSADESETRFFICTEC 93
>gi|409728138|ref|ZP_11271009.1| transcription termination factor Tfs [Halococcus hamelinensis
100A6]
gi|448723108|ref|ZP_21705633.1| transcription termination factor Tfs [Halococcus hamelinensis
100A6]
gi|445788063|gb|EMA38785.1| transcription termination factor Tfs [Halococcus hamelinensis
100A6]
Length = 106
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 74 KAEYTIHFNTVEKEKQKDKTEIADG-----PIVERKCKRCNNDTMSYATLQLRSADEGQT 128
AE T + +++ + +++D P E C C ND + Q+RSADE +T
Sbjct: 30 NAETEAAMTTTQGQEETEVIDVSDVDDRGLPTTEVHCDECGNDEAYWYMQQIRSADESET 89
Query: 129 IFFTCTKC 136
FF CT C
Sbjct: 90 RFFVCTNC 97
>gi|389750913|gb|EIM91986.1| DNA-directed RNA polymerase, partial [Stereum hirsutum FP-91666
SS1]
Length = 125
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 26/128 (20%)
Query: 13 FCSKCGTIL--PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC CGT+L P D +G V C C ++P +I R H + F +
Sbjct: 12 FCGDCGTLLDVPKAD-EGTVNCEQCG------HEEPASSYENIEITTR--SHPDAFPSAL 62
Query: 71 EEIKAEYTIHFNTVEKEKQKDKT-EIADGPI-VERKCKRCNNDTMSYATLQLRSADEGQT 128
+ K K + KT E +G + V KC C + +Q+RSADEG T
Sbjct: 63 RQ-------------KRKTQTKTHEATEGLLKVTEKCPECGHMEAFSKEIQMRSADEGST 109
Query: 129 IFFTCTKC 136
I +TC C
Sbjct: 110 ILYTCVAC 117
>gi|395326429|gb|EJF58839.1| DNA-directed RNA polymerase I kDa polypeptide [Dichomitus squalens
LYAD-421 SS1]
Length = 126
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 24/127 (18%)
Query: 13 FCSKCGTILPLF-DFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC CGT+L L D + +V C C +P +I + R H F +
Sbjct: 13 FCPDCGTLLNLPQDGEFEVTCEQCG------HVEPASSYENIEIVTR--SHPEAFPSALR 64
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPI--VERKCKRCNNDTMSYATLQLRSADEGQTI 129
+ K K + K A+ + V KC C + QLRSADEG TI
Sbjct: 65 Q-------------KRKTQTKVHAANEDLLKVTEKCPECGHMEAYSKEAQLRSADEGSTI 111
Query: 130 FFTCTKC 136
F+TC +C
Sbjct: 112 FYTCVRC 118
>gi|453081704|gb|EMF09752.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Mycosphaerella
populorum SO2202]
Length = 123
Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 97 DGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+G + + C C + M + LQLRSADEG T+F+ C +C
Sbjct: 76 NGQKISQTCPECASPEMYFTALQLRSADEGTTVFYVCHEC 115
>gi|448502568|ref|ZP_21612681.1| transcription factor TFIIS [Halorubrum coriense DSM 10284]
gi|445694063|gb|ELZ46198.1| transcription factor TFIIS [Halorubrum coriense DSM 10284]
Length = 97
Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +C C+ND + Q+RSADE +T FF CT+C
Sbjct: 51 PTTTAQCPECDNDRAYWYMQQIRSADESETRFFVCTEC 88
>gi|303312615|ref|XP_003066319.1| DNA-directed RNA polymerase I, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240105981|gb|EER24174.1| DNA-directed RNA polymerase I, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320033574|gb|EFW15521.1| DNA-directed RNA polymerase I polypeptide [Coccidioides posadasii
str. Silveira]
Length = 121
Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
++ C +C M++ TLQLRSADEG T+F++C
Sbjct: 78 VIAHTCDQCGRPEMTFYTLQLRSADEGTTVFYSC 111
>gi|91774117|ref|YP_566809.1| DNA-directed RNA polymerase, subunit M [Methanococcoides burtonii
DSM 6242]
gi|91713132|gb|ABE53059.1| DNA-directed RNA polymerase subunit M [Methanococcoides burtonii
DSM 6242]
Length = 103
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +C+ C N+T + QLRSADE +T FF C KC
Sbjct: 58 PTTTARCEECGNNTAYWWLRQLRSADESETRFFKCIKC 95
>gi|356519228|ref|XP_003528275.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Glycine max]
Length = 71
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
V +KC++C + Y T Q+RSAD+G+T F+TCT
Sbjct: 29 VNKKCEKCGHGEAIYYTRQMRSADKGKTTFYTCT 62
>gi|448739405|ref|ZP_21721420.1| DNA-directed RNA polymerase subunit M1 [Halococcus thailandensis
JCM 13552]
gi|445800000|gb|EMA50369.1| DNA-directed RNA polymerase subunit M1 [Halococcus thailandensis
JCM 13552]
Length = 106
Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 81 FNTVEKEKQKDKTEIADG-----PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTK 135
T + +++ + +++D P E C C ND + Q+RSADE +T FF CT+
Sbjct: 37 MTTTQGQEESEIIDVSDAENRGLPTTEVHCPECGNDEAYWYMQQIRSADESETRFFVCTE 96
Query: 136 C 136
C
Sbjct: 97 C 97
>gi|119192746|ref|XP_001246979.1| hypothetical protein CIMG_00750 [Coccidioides immitis RS]
Length = 116
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
++ C +C M++ TLQLRSADEG T+F++C
Sbjct: 78 VIAHTCDQCGRPEMTFYTLQLRSADEGTTVFYSC 111
>gi|15922591|ref|NP_378260.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus tokodaii
str. 7]
gi|15623381|dbj|BAB67369.1| archaeal transcription factor S [Sulfolobus tokodaii str. 7]
Length = 112
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADG--PIVERK------CKRCNNDTMSYATLQLRS 122
EE + ++ TV K K+KT + DG P + C C ND + LQ R
Sbjct: 31 EESTSSGSMKIKTVVKHSIKEKTLVVDGDAPPAGAQITKGVTCPACGNDEAYFWILQTRR 90
Query: 123 ADEGQTIFFTCTKC 136
ADE T F+ CTKC
Sbjct: 91 ADEPPTRFYKCTKC 104
>gi|403223885|dbj|BAM42015.1| RNA polymerase small subunit [Theileria orientalis strain Shintoku]
Length = 108
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 88 KQKDKT-----EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K DKT E P + C CNN+ + ++Q RSADE T FF CT C
Sbjct: 49 KDVDKTPLSTNEFEHSPKIPAVCPYCNNNEAYFMSIQTRSADEPMTQFFVCTSC 102
>gi|392863788|gb|EAS35443.2| DNA-directed RNA polymerase I polypeptide [Coccidioides immitis RS]
Length = 121
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
++ C +C M++ TLQLRSADEG T+F++C
Sbjct: 78 VIAHTCDQCGRPEMTFYTLQLRSADEGTTVFYSC 111
>gi|378726250|gb|EHY52709.1| DNA-directed RNA polymerase I subunit A12 [Exophiala dermatitidis
NIH/UT8656]
Length = 123
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
++ R C C+ M Y T QLRSADEG T+F+ C
Sbjct: 80 VIARDCPNCHRSEMFYHTKQLRSADEGTTVFYRC 113
>gi|329766135|ref|ZP_08257694.1| transcription termination factor Tfs [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393794803|ref|ZP_10378167.1| transcription termination factor Tfs [Candidatus Nitrosoarchaeum
limnia BG20]
gi|329137406|gb|EGG41683.1| transcription termination factor Tfs [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 103
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P ++ +C++C ND + LQ RSADE T F+ C+KC
Sbjct: 58 PTIKIECEKCGNDEAVWWMLQTRSADEPTTQFYRCSKC 95
>gi|41615166|ref|NP_963664.1| hypothetical protein NEQ377 [Nanoarchaeum equitans Kin4-M]
gi|40068890|gb|AAR39225.1| NEQ377 [Nanoarchaeum equitans Kin4-M]
Length = 106
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC +C+++ + Y TLQ R++DE +TIF+ C KC
Sbjct: 66 KCPKCSSEEVVYFTLQTRASDEAETIFYKCLKC 98
>gi|448424321|ref|ZP_21582371.1| transcription factor TFIIS [Halorubrum terrestre JCM 10247]
gi|448448783|ref|ZP_21591368.1| transcription factor TFIIS [Halorubrum litoreum JCM 13561]
gi|448479265|ref|ZP_21604117.1| transcription factor TFIIS [Halorubrum arcis JCM 13916]
gi|448506351|ref|ZP_21614461.1| transcription factor TFIIS [Halorubrum distributum JCM 9100]
gi|448524804|ref|ZP_21619446.1| transcription factor TFIIS [Halorubrum distributum JCM 10118]
gi|445682314|gb|ELZ34733.1| transcription factor TFIIS [Halorubrum terrestre JCM 10247]
gi|445700001|gb|ELZ52019.1| transcription factor TFIIS [Halorubrum distributum JCM 9100]
gi|445700170|gb|ELZ52181.1| transcription factor TFIIS [Halorubrum distributum JCM 10118]
gi|445814257|gb|EMA64224.1| transcription factor TFIIS [Halorubrum litoreum JCM 13561]
gi|445822543|gb|EMA72307.1| transcription factor TFIIS [Halorubrum arcis JCM 13916]
Length = 106
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +C C+ND + Q+RSADE +T FF CT+C
Sbjct: 60 PTTTAQCPECDNDRAYWYMQQIRSADESETRFFVCTEC 97
>gi|399217223|emb|CCF73910.1| unnamed protein product [Babesia microti strain RI]
Length = 112
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C CNN+ + ++Q+RSADE T F+TCTKC
Sbjct: 75 CPTCNNNEAYFYSIQIRSADEPSTNFYTCTKC 106
>gi|324544072|gb|ADY49673.1| DNA-directed RNA polymerase III subunit RPC10 [Ascaris suum]
Length = 108
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 88 KQKDKTEIADGP-------IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
K KD E+ GP I + +C RC D + LQ RSADE T+F+ C
Sbjct: 45 KLKDLDEVLGGPSAWENAQITDERCPRCGGDRAYFMQLQTRSADEPMTVFYRCA 98
>gi|357017157|gb|AET50607.1| hypothetical protein [Eimeria tenella]
Length = 111
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C+RC ++ ++T Q RSADEG T+ + CTKC
Sbjct: 72 CERCGHNEAFFSTFQARSADEGMTVMYECTKC 103
>gi|21553769|gb|AAM62862.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 106
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
EIK + + ++E KD +I E C RC +D + ++Q+RSADE ++ F+
Sbjct: 37 EIKKKQLLVKKSIEPVVTKD--DIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFY 94
Query: 132 TCTKC 136
C KC
Sbjct: 95 RCLKC 99
>gi|356524173|ref|XP_003530706.1| PREDICTED: uncharacterized protein LOC100813507 [Glycine max]
Length = 230
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 12/92 (13%)
Query: 49 LGPDILFLKRFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKD-KTEIADGPIV------ 101
LG DI+ + G L+ + + + +F+ +EK+ +++ EI + +V
Sbjct: 134 LGKDIMAIAAVIG-----LSGGKRLLSSSYHYFDIIEKDIRRELGMEIIEEHMVMEYSKV 188
Query: 102 ERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+KC++C + +Y T +RSAD+GQT F+TC
Sbjct: 189 NKKCEKCGHGEATYYTRLMRSADKGQTTFYTC 220
>gi|18977358|ref|NP_578715.1| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus DSM
3638]
gi|18893037|gb|AAL81110.1| DNA-directed RNA polymerase subunit m [Pyrococcus furiosus DSM
3638]
Length = 110
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 52 DILFLKRFKGHFNLFLAVFEE-IKAEYTIHFNTVEKEKQKD-------KTEIADGPIVER 103
I+ R +G F +EE I E T + E+ K + + E++ P +
Sbjct: 10 SIMIPDRRRGVFVCRKCGYEEPINPEDTKAYRRTEEVKHRPDEGVVVIEQEVSTLPTAKV 69
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C ++ + LQ R+ DE TIF+ C KC
Sbjct: 70 TCPKCGHNEAWWWELQTRAGDEPSTIFYKCKKC 102
>gi|297848404|ref|XP_002892083.1| hypothetical protein ARALYDRAFT_311313 [Arabidopsis lyrata subsp.
lyrata]
gi|297337925|gb|EFH68342.1| hypothetical protein ARALYDRAFT_311313 [Arabidopsis lyrata subsp.
lyrata]
Length = 106
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
EIK + + ++E KD +I E C RC +D + ++Q+RSADE ++ F+
Sbjct: 37 EIKKKQLLVKKSIEPVVTKD--DIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFY 94
Query: 132 TCTKC 136
C KC
Sbjct: 95 RCLKC 99
>gi|385806138|ref|YP_005842536.1| DNA-directed RNA polymerase subunit M [Fervidicoccus fontis Kam940]
gi|383796001|gb|AFH43084.1| DNA-directed RNA polymerase, subunit M [Fervidicoccus fontis
Kam940]
Length = 104
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C N+ + Y T+Q R+ADE T F+ CTKC
Sbjct: 65 CPKCGNNEVYYWTMQTRAADEPPTRFYKCTKC 96
>gi|15235876|ref|NP_192535.1| DNA-directed RNA polymerase, subunit M [Arabidopsis thaliana]
gi|4309697|gb|AAD15481.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|7267434|emb|CAB77946.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|18253033|gb|AAL62443.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|23198220|gb|AAN15637.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332657185|gb|AEE82585.1| DNA-directed RNA polymerase, subunit M [Arabidopsis thaliana]
Length = 106
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
EIK + + ++E KD +I E C RC +D + ++Q+RSADE ++ F+
Sbjct: 37 EIKKKQLLVKKSIEPVVTKD--DIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFY 94
Query: 132 TCTKC 136
C KC
Sbjct: 95 RCLKC 99
>gi|397651491|ref|YP_006492072.1| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus COM1]
gi|393189082|gb|AFN03780.1| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus COM1]
Length = 109
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 52 DILFLKRFKGHFNLFLAVFEE-IKAEYTIHFNTVEKEKQKD-------KTEIADGPIVER 103
I+ R +G F +EE I E T + E+ K + + E++ P +
Sbjct: 9 SIMIPDRRRGVFVCRKCGYEEPINPEDTKAYRRTEEVKHRPDEGVVVIEQEVSTLPTAKV 68
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C ++ + LQ R+ DE TIF+ C KC
Sbjct: 69 TCPKCGHNEAWWWELQTRAGDEPSTIFYKCKKC 101
>gi|330507554|ref|YP_004383982.1| DNA-directed RNA polymerase subunit M [Methanosaeta concilii GP6]
gi|328928362|gb|AEB68164.1| DNA-directed RNA polymerase subunit M [Methanosaeta concilii GP6]
Length = 102
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E A P +C C N+ + QLRSADE + FF CTKC
Sbjct: 52 ESAGLPTTTARCPECGNNVAYWWLRQLRSADESEVRFFRCTKC 94
>gi|15223344|ref|NP_171629.1| DNA-directed RNA polymerase III subunit C11 [Arabidopsis thaliana]
gi|9665148|gb|AAF97332.1|AC023628_13 Similar to DNA-directed RNA polymerase subunit M [Arabidopsis
thaliana]
gi|30793865|gb|AAP40385.1| unknown protein [Arabidopsis thaliana]
gi|30794074|gb|AAP40481.1| unknown protein [Arabidopsis thaliana]
gi|110738907|dbj|BAF01375.1| hypothetical protein [Arabidopsis thaliana]
gi|332189133|gb|AEE27254.1| DNA-directed RNA polymerase III subunit C11 [Arabidopsis thaliana]
Length = 106
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
EIK + + ++E KD +I E C RC +D + ++Q+RSADE ++ F+
Sbjct: 37 EIKKKQLLVKKSIEAVVTKD--DIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFY 94
Query: 132 TCTKC 136
C KC
Sbjct: 95 RCLKC 99
>gi|406868604|gb|EKD21641.1| putative DNA-directed RNA polymerase I subunit [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 126
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 88 KQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+Q ++ ++ + ++ C C D + Y +QLRSADEG TIF+ C
Sbjct: 71 QQIERGDLQNEATIKVTCTECGRDEVRYTAVQLRSADEGSTIFYRC 116
>gi|71029042|ref|XP_764164.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351118|gb|EAN31881.1| hypothetical protein TP04_0529 [Theileria parva]
Length = 108
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ E P + C CNN + ++Q RSADE T FF CT C
Sbjct: 57 EANEFKHAPRIPAVCPACNNKEAYFMSIQTRSADEPMTQFFVCTAC 102
>gi|407463340|ref|YP_006774657.1| transcription termination factor Tfs [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046962|gb|AFS81715.1| transcription termination factor Tfs [Candidatus Nitrosopumilus
koreensis AR1]
Length = 104
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P ++ +C++C +D + LQ RSADE T F+ CTKC
Sbjct: 59 PTIKIECEKCGHDEAVWWMLQTRSADEPTTQFYRCTKC 96
>gi|312087389|ref|XP_003145453.1| DNA-directed RNA polymerase III polypeptide [Loa loa]
gi|307759383|gb|EFO18617.1| DNA-directed RNA polymerase III polypeptide [Loa loa]
Length = 108
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 88 KQKDKTEIADGP-------IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
K KD E+ GP I + +C RC D + LQ RSADE T+F+ C
Sbjct: 45 KLKDLDEVLGGPGAWENAQITDERCPRCAGDRAYFMQLQTRSADEPMTVFYRCA 98
>gi|408398419|gb|EKJ77550.1| hypothetical protein FPSE_02300 [Fusarium pseudograminearum CS3096]
Length = 122
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 13 FCSKCGTILPLFDF--KGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC+ CG +LP + ++C C G + + G + + F FL
Sbjct: 9 FCTDCGNLLPATKGTQRNVLRCECC----GAENRD---TGSKVTVTQTKPSDFPSFL--- 58
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+ + +VEK + ++ C +C + + Y T+QLRSADEG T+
Sbjct: 59 ---RQKLQSSVQSVEKHNLQTES------TAHETCPKCGREEVKYTTVQLRSADEGSTVI 109
Query: 131 FTC 133
++C
Sbjct: 110 YSC 112
>gi|358393887|gb|EHK43288.1| hypothetical protein TRIATDRAFT_35173 [Trichoderma atroviride IMI
206040]
Length = 122
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 13 FCSKCGTILPLFDF--KGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC+ CG +LP + + C C G ++ K F FL
Sbjct: 9 FCTDCGNLLPATKGTEQNVLSCECCSAENKD-------TGAKVIVTKSKPSDFPSFL--- 58
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+ + VE+ ++ V +C C + + Y T+QLRSADEG T+
Sbjct: 59 ---RQKLQSSVQAVERHTLNTESS------VRERCPNCGREEVKYTTVQLRSADEGSTVI 109
Query: 131 FTC 133
+ C
Sbjct: 110 YNC 112
>gi|84996923|ref|XP_953183.1| RNA polymerase small subunit [Theileria annulata strain Ankara]
gi|65304179|emb|CAI76558.1| RNA polymerase small subunit, putative [Theileria annulata]
Length = 108
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ E P + C CNN + ++Q RSADE T FF CT C
Sbjct: 57 EANEFQHAPRIPAVCPSCNNKEAYFMSIQTRSADEPMTQFFVCTGC 102
>gi|154150454|ref|YP_001404072.1| transcription termination factor Tfs [Methanoregula boonei 6A8]
gi|153999006|gb|ABS55429.1| transcription termination factor Tfs [Methanoregula boonei 6A8]
Length = 104
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 83 TVEKEKQKDKTEIADG--------PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
T+E+++ +++ I D P ++ KC +C N+ + QLR+ADE + FF CT
Sbjct: 35 TMERKRTENEITIVDDEDEKVNTMPTIQIKCPKCENNLAFWWLRQLRAADESEVRFFRCT 94
Query: 135 KC 136
+C
Sbjct: 95 EC 96
>gi|284164625|ref|YP_003402904.1| transcription termination factor Tfs [Haloterrigena turkmenica DSM
5511]
gi|448395734|ref|ZP_21568828.1| transcription termination factor Tfs [Haloterrigena salina JCM
13891]
gi|284014280|gb|ADB60231.1| transcription termination factor Tfs [Haloterrigena turkmenica DSM
5511]
gi|445660315|gb|ELZ13111.1| transcription termination factor Tfs [Haloterrigena salina JCM
13891]
Length = 102
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q+RSADE +T FF CT+C
Sbjct: 56 PETDAHCPECGNDRAHWYMQQIRSADESETRFFICTEC 93
>gi|300120315|emb|CBK19869.2| unnamed protein product [Blastocystis hominis]
Length = 214
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC+RC +D Y Q RSADE T+FF C C
Sbjct: 176 KCRRCGSDKTQYMQKQTRSADEPMTVFFECMNC 208
>gi|448327639|ref|ZP_21516961.1| transcription termination factor Tfs [Natrinema versiforme JCM
10478]
gi|445617268|gb|ELY70866.1| transcription termination factor Tfs [Natrinema versiforme JCM
10478]
Length = 102
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + +C C ND + Q+R+ADE +T FF CT+C
Sbjct: 56 PETDARCPECGNDRAHWYMQQIRAADESETRFFICTEC 93
>gi|448318936|ref|ZP_21508446.1| transcription termination factor Tfs [Natronococcus jeotgali DSM
18795]
gi|445597464|gb|ELY51539.1| transcription termination factor Tfs [Natronococcus jeotgali DSM
18795]
Length = 102
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 75 AEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
AEYT+ + E + + +E P + C C ND + Q+RSADE +T FF CT
Sbjct: 33 AEYTVTEDQ-EASEVIESSEETSLPETDANCPECGNDRAYWYMQQIRSADESETRFFICT 91
Query: 135 KC 136
C
Sbjct: 92 DC 93
>gi|448309842|ref|ZP_21499695.1| transcription termination factor Tfs [Natronorubrum bangense JCM
10635]
gi|445588863|gb|ELY43102.1| transcription termination factor Tfs [Natronorubrum bangense JCM
10635]
Length = 102
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q+RSADE +T FF CT+C
Sbjct: 56 PETDAHCPECGNDRAHWYMQQIRSADESETRFFICTEC 93
>gi|361130396|gb|EHL02209.1| putative Transcription elongation factor S-II [Glarea lozoyensis
74030]
Length = 411
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 85 EKEKQKDKTEIADGPIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+K+ + ++A P+ E+ +C RC +SY+ Q RSADE T F CT C
Sbjct: 236 DKKLNYENMKMAQVPMAEKSISDALRCGRCGQKKVSYSQAQTRSADEPMTTFCECTVC 293
>gi|452003274|gb|EMD95731.1| hypothetical protein COCHEDRAFT_1166133 [Cochliobolus
heterostrophus C5]
Length = 152
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
++ I+ C++C + + Y T QLRSADEG T+F+ C
Sbjct: 74 DVQTTSIINHPCEKCGREQVRYYTQQLRSADEGTTVFYEC 113
>gi|448305187|ref|ZP_21495120.1| transcription termination factor Tfs [Natronorubrum sulfidifaciens
JCM 14089]
gi|445589465|gb|ELY43697.1| transcription termination factor Tfs [Natronorubrum sulfidifaciens
JCM 14089]
Length = 102
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q+RSADE +T FF CT+C
Sbjct: 56 PETDTHCPECGNDRAHWYMQQIRSADESETRFFICTEC 93
>gi|448435800|ref|ZP_21586868.1| transcription factor TFIIS [Halorubrum tebenquichense DSM 14210]
gi|445683235|gb|ELZ35635.1| transcription factor TFIIS [Halorubrum tebenquichense DSM 14210]
Length = 106
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +C C+ND + Q+R+ADE +T FF CT+C
Sbjct: 60 PTTTAQCPECDNDQAYWYMQQIRAADESETRFFVCTEC 97
>gi|302894301|ref|XP_003046031.1| hypothetical protein NECHADRAFT_33664 [Nectria haematococca mpVI
77-13-4]
gi|256726958|gb|EEU40318.1| hypothetical protein NECHADRAFT_33664 [Nectria haematococca mpVI
77-13-4]
Length = 88
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+K + KC +C + + Y T+QLRSADEG T+ + C
Sbjct: 25 EKHNLQTESTAHEKCPKCGREEVKYTTVQLRSADEGSTVIYNC 67
>gi|448825537|ref|YP_007418468.1| transcription factor S-II-related protein [Megavirus lba]
gi|371943903|gb|AEX61731.1| transcription factor S-II-related protein [Megavirus courdo7]
gi|425701469|gb|AFX92631.1| transcription factor S-II-related protein [Megavirus courdo11]
gi|444236722|gb|AGD92492.1| transcription factor S-II-related protein [Megavirus lba]
Length = 170
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 60 KGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTE--IADGPIVERK-CKRCNNDTMSYA 116
KG +N + F +K + N ++ +K TE + D P +E K C+ C N Y
Sbjct: 85 KGEYNAYNIAF--LKPDELNKDNWIKIIMRKKTTEEKLNDLPAIEWKACRACKNTEYFYR 142
Query: 117 TLQLRSADEGQTIFFTCTKC 136
LQ RSADE T F+ C KC
Sbjct: 143 QLQTRSADEPITTFYICKKC 162
>gi|448529168|ref|ZP_21620427.1| transcription factor TFIIS [Halorubrum hochstenium ATCC 700873]
gi|445709601|gb|ELZ61427.1| transcription factor TFIIS [Halorubrum hochstenium ATCC 700873]
Length = 106
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +C C+ND + Q+R+ADE +T FF CT+C
Sbjct: 60 PTTTAQCPECDNDQAYWYMQQIRAADESETRFFVCTEC 97
>gi|448473373|ref|ZP_21601515.1| transcription factor TFIIS [Halorubrum aidingense JCM 13560]
gi|445818885|gb|EMA68734.1| transcription factor TFIIS [Halorubrum aidingense JCM 13560]
Length = 106
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADG-----PIVERKCKRCNNDTMSYATLQLRSADE 125
EE AE+T E + + + +++D P C C ND + Q+RSADE
Sbjct: 32 EENDAEWT-----TESQVESEIIDVSDAEDKGLPKTTAHCPECGNDQAYWYMQQIRSADE 86
Query: 126 GQTIFFTCTKC 136
+T FF CT+C
Sbjct: 87 SETRFFVCTEC 97
>gi|402591176|gb|EJW85106.1| DNA-directed RNA polymerase subunit [Wuchereria bancrofti]
Length = 108
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 88 KQKDKTEIADGP-------IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
K KD E+ GP I +C RC D + LQ RSADE T+F+ C
Sbjct: 45 KLKDLDEVLGGPGAWENAQITNERCPRCAGDRAYFMQLQTRSADEPMTVFYRCA 98
>gi|170594906|ref|XP_001902171.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Brugia
malayi]
gi|158590299|gb|EDP28981.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative
[Brugia malayi]
Length = 108
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 88 KQKDKTEIADGP-------IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
K KD E+ GP I +C RC D + LQ RSADE T+F+ C
Sbjct: 45 KLKDLDEVLGGPGAWENAQITNERCPRCAGDRAYFMQLQTRSADEPMTVFYRCA 98
>gi|340058056|emb|CCC52409.1| putative RNA polymerase III C11 subunit [Trypanosoma vivax Y486]
Length = 126
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 21/131 (16%)
Query: 13 FCSKCGTILPLFDFK--GDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC CGT+L + + C C Q+PL + N +
Sbjct: 3 FCPFCGTLLLIEPHQTLNRFSCSSCDYVVPILSQEPLTV--------------NHSFRQY 48
Query: 71 EEIKAEYTIHFN-TVEKEKQKDKTEIADGPIVERKC----KRCNNDTMSYATLQLRSADE 125
++ +Y + N E K + + G ++ +C K+C+++ Y +Q+RSADE
Sbjct: 49 NKVVDDYHVKPNKDAEGNDIKGEEGVDGGQVITVQCQNDEKQCDSNKALYVQIQMRSADE 108
Query: 126 GQTIFFTCTKC 136
T FF C KC
Sbjct: 109 PATTFFKCLKC 119
>gi|429962736|gb|ELA42280.1| transcription factor S [Vittaforma corneae ATCC 50505]
Length = 104
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC++C+N + +Q RSADE TIF+ CTKC
Sbjct: 66 KCQKCSNGEALFVEIQTRSADEPMTIFYQCTKC 98
>gi|363540774|ref|YP_004894614.1| mg563 gene product [Megavirus chiliensis]
gi|350611939|gb|AEQ33383.1| transcription factor S-II-related protein [Megavirus chiliensis]
Length = 170
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 60 KGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTE--IADGPIVERK-CKRCNNDTMSYA 116
KG +N + F +K + N ++ +K TE + D P +E K C+ C N Y
Sbjct: 85 KGEYNAYNIAF--LKPDELNKDNWIKIIMRKKTTEEKLNDLPAIEWKACRACKNTEYFYR 142
Query: 117 TLQLRSADEGQTIFFTCTKC 136
LQ RSADE T F+ C KC
Sbjct: 143 QLQTRSADEPITTFYICKKC 162
>gi|397781362|ref|YP_006545834.1| transcription elongation factor [Methanoculleus bourgensis MS2]
gi|396939864|emb|CCJ37119.1| transcription elongation factor [Methanoculleus bourgensis MS2]
Length = 104
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 74 KAEYTIHFNTVEKEKQKDKT------------EIADGPIVERKCKRCNNDTMSYATLQLR 121
K Y FN ++ K+ DK E+A P + KC C T + QLR
Sbjct: 22 KCGYIRDFNDSDRLKKTDKRLEKEIIIVDNVEEVATLPTITTKCPECECTTAYWWLRQLR 81
Query: 122 SADEGQTIFFTCTKC 136
+ADE + FF CT C
Sbjct: 82 AADESEVRFFRCTAC 96
>gi|448491581|ref|ZP_21608421.1| transcription factor TFIIS [Halorubrum californiensis DSM 19288]
gi|445692581|gb|ELZ44752.1| transcription factor TFIIS [Halorubrum californiensis DSM 19288]
Length = 106
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +C C+ND + Q+R+ADE +T FF CT+C
Sbjct: 60 PTTTAQCPECDNDRAYWYMQQIRAADESETRFFVCTEC 97
>gi|340521485|gb|EGR51719.1| predicted protein [Trichoderma reesei QM6a]
Length = 122
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 13 FCSKCGTILPLFDF--KGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC+ CG +LP + + C C G I+ + F FL
Sbjct: 9 FCTDCGNLLPATKGTEQNVLSCECCSAENKD-------TGAKIIVTQSKPSDFPSFL--- 58
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+ + VE+ ++ V +C C + + Y T+QLRSADEG T+
Sbjct: 59 ---RQKLQSSVQAVERHTLNTES------TVRERCPNCGREEVKYTTVQLRSADEGSTVI 109
Query: 131 FTC 133
+ C
Sbjct: 110 YNC 112
>gi|330913934|ref|XP_003296424.1| hypothetical protein PTT_06530 [Pyrenophora teres f. teres 0-1]
gi|311331410|gb|EFQ95475.1| hypothetical protein PTT_06530 [Pyrenophora teres f. teres 0-1]
Length = 121
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+++ C++C + + Y T QLRSADEG T+F+ C
Sbjct: 78 VIDHPCEKCGREQVRYYTQQLRSADEGTTVFYEC 111
>gi|336255048|ref|YP_004598155.1| transcription termination factor Tfs [Halopiger xanaduensis SH-6]
gi|335339037|gb|AEH38276.1| transcription termination factor Tfs [Halopiger xanaduensis SH-6]
Length = 102
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q+RSADE +T FF CT+C
Sbjct: 56 PETDAHCPECGNDRAYWYMQQIRSADESETRFFICTEC 93
>gi|346970562|gb|EGY14014.1| DNA-directed RNA polymerase I subunit RPA12 [Verticillium dahliae
VdLs.17]
Length = 122
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+++ + T+EK K + +++ C +C + + Y LQLR ADEG T F
Sbjct: 56 SQLRQKLQSKVQTIEKHK------VNTHALIDETCPKCGREEVYYTQLQLRGADEGSTTF 109
Query: 131 FTC 133
+TC
Sbjct: 110 YTC 112
>gi|408405124|ref|YP_006863107.1| DNA-directed RNA polymerase subunit M [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365720|gb|AFU59450.1| putative DNA-directed RNA polymerase subunit M [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 94
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +C +C N T + LQ RSADE T F+ CTKC
Sbjct: 49 PTTNIECPQCGNGTAFWWMLQTRSADEATTQFYRCTKC 86
>gi|253744950|gb|EET01076.1| Transcription factor TFIIS [Giardia intestinalis ATCC 50581]
Length = 346
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 61 GHFNLFLAVFEE-IKAEYTIHFNTVEKE-------KQKDKTEIADGPIVER-------KC 105
G+ +L +VF + IK + + + +E E + K + EI ++R KC
Sbjct: 249 GNLDLCASVFMQVIKPQELVQMSVIELEPAECRELRNKAREEIMASVDLKRFVQHTGIKC 308
Query: 106 KRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K+C +T+ Q RSADE TI +TC+ C
Sbjct: 309 KKCKQETVVRLEKQTRSADEATTIEYTCSSC 339
>gi|302423150|ref|XP_003009405.1| DNA-directed RNA polymerase I subunit RPA12 [Verticillium
albo-atrum VaMs.102]
gi|261352551|gb|EEY14979.1| DNA-directed RNA polymerase I subunit RPA12 [Verticillium
albo-atrum VaMs.102]
Length = 122
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+++ + T+EK K + +++ C +C + + Y LQLR ADEG T F
Sbjct: 56 SQLRQKLQSKVQTIEKHK------VNTHALIDETCPKCGREEVYYTQLQLRGADEGSTTF 109
Query: 131 FTC 133
+TC
Sbjct: 110 YTC 112
>gi|356541743|ref|XP_003539333.1| PREDICTED: uncharacterized protein LOC100810382 [Glycine max]
Length = 393
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
V +KC++C + +Y T Q+RSAD+GQT TCT
Sbjct: 351 VSKKCEKCGHGEATYYTRQMRSADKGQTTLCTCT 384
>gi|402082659|gb|EJT77677.1| hypothetical protein GGTG_02781 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 121
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+ E+ + ++ C++C + ++ +QLRSADEG TIF+ C
Sbjct: 70 RHELVTEALTQKTCEKCGRKEVRFSAVQLRSADEGSTIFYNC 111
>gi|397775806|ref|YP_006543352.1| transcription factor S [Natrinema sp. J7-2]
gi|397684899|gb|AFO59276.1| transcription factor S [Natrinema sp. J7-2]
Length = 93
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q+RSADE +T FF CT+C
Sbjct: 47 PETDAICPECGNDRAHWYMQQIRSADESETRFFICTEC 84
>gi|209880253|ref|XP_002141566.1| transcription factor S-II domain-containing protein
[Cryptosporidium muris RN66]
gi|209557172|gb|EEA07217.1| transcription factor S-II domain-containing protein
[Cryptosporidium muris RN66]
Length = 256
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D E A P ++ C +C+++ + Q RSADEG T+ + C KC
Sbjct: 203 DAMEKAKAPKIKEICPKCSHNEAFFTQFQARSADEGTTVMYECCKC 248
>gi|390371152|dbj|GAB65033.1| transcription factor [Plasmodium cynomolgi strain B]
Length = 106
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +D + +LQ+RSADE TIF+ C KC
Sbjct: 69 CPKCTHDEAYFYSLQIRSADEPSTIFYICIKC 100
>gi|449020026|dbj|BAM83428.1| probable transcription elongation factor S-II [Cyanidioschyzon
merolae strain 10D]
Length = 794
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C +C + +Y +Q RSADE T F TCT C
Sbjct: 756 RCGKCGQRSCTYFQMQTRSADEPMTTFVTCTHC 788
>gi|119719537|ref|YP_920032.1| transcription termination factor Tfs [Thermofilum pendens Hrk 5]
gi|119524657|gb|ABL78029.1| DNA-directed RNA polymerase, subunit M [Thermofilum pendens Hrk 5]
Length = 109
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P+V KC+ C ND LQ R+ DE T F+ CTKC
Sbjct: 64 PVVSFKCENCGNDKAYVYELQTRAGDEPATRFYICTKC 101
>gi|448338833|ref|ZP_21527868.1| transcription termination factor Tfs [Natrinema pallidum DSM 3751]
gi|445621308|gb|ELY74784.1| transcription termination factor Tfs [Natrinema pallidum DSM 3751]
Length = 102
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q+RSADE +T FF CT+C
Sbjct: 56 PETDAICPECGNDRAHWYMQQIRSADESETRFFICTEC 93
>gi|429848879|gb|ELA24315.1| DNA-directed RNA polymerase i subunit rpa12 [Colletotrichum
gloeosporioides Nara gc5]
Length = 128
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 95 IADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
I+ ++ C +C + + ++ +QLRSADEG TIFF C
Sbjct: 73 ISTEATIKETCPKCGREEVRFSAVQLRSADEGSTIFFNC 111
>gi|15679314|ref|NP_276431.1| transcription elongation factor TFIIS [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622419|gb|AAB85792.1| transcription elongation factor TFIIS [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 136
Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 30/125 (24%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC KCG ++ F +G KC G + + K + V E
Sbjct: 34 EFCPKCGAVM--FPSEGKFKCQC---------------GYEKDITDKLKDKYR----VSE 72
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
E++A+ TI F ++ P +C +C N + Q R ADE +T FF
Sbjct: 73 EVEAKETIIFTG---------DDVNTLPTTRVECPKCGNMEAFWWLQQTRRADESETRFF 123
Query: 132 TCTKC 136
CT+C
Sbjct: 124 RCTRC 128
>gi|448446626|ref|ZP_21590848.1| transcription factor TFIIS [Halorubrum saccharovorum DSM 1137]
gi|445683770|gb|ELZ36160.1| transcription factor TFIIS [Halorubrum saccharovorum DSM 1137]
Length = 106
Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 83 TVEKEKQKDKTEIADG-----PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
T E + + + +++D P C C ND + Q+RSADE +T FF CT+C
Sbjct: 39 TTESQVESEIVDVSDAEDKGLPQTTAHCPECGNDRAYWYMQQIRSADESETRFFVCTEC 97
>gi|448384480|ref|ZP_21563318.1| transcription termination factor Tfs [Haloterrigena thermotolerans
DSM 11522]
gi|445658546|gb|ELZ11364.1| transcription termination factor Tfs [Haloterrigena thermotolerans
DSM 11522]
Length = 102
Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q+RSADE +T FF CT+C
Sbjct: 56 PETDAICPECGNDRAHWYMQQIRSADESETRFFICTEC 93
>gi|433592430|ref|YP_007281926.1| transcription factor S, archaeal [Natrinema pellirubrum DSM 15624]
gi|448333776|ref|ZP_21522965.1| transcription termination factor Tfs [Natrinema pellirubrum DSM
15624]
gi|433307210|gb|AGB33022.1| transcription factor S, archaeal [Natrinema pellirubrum DSM 15624]
gi|445621655|gb|ELY75126.1| transcription termination factor Tfs [Natrinema pellirubrum DSM
15624]
Length = 102
Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q+RSADE +T FF CT+C
Sbjct: 56 PETDAICPECGNDRAHWYMQQIRSADESETRFFICTEC 93
>gi|189205621|ref|XP_001939145.1| hypothetical protein PTRG_08813 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975238|gb|EDU41864.1| hypothetical protein PTRG_08813 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 139
Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
++ C++C + + Y T QLRSADEG T+F+ C
Sbjct: 96 VINHPCEKCGREQVRYYTQQLRSADEGTTVFYEC 129
>gi|448344707|ref|ZP_21533611.1| transcription termination factor Tfs [Natrinema altunense JCM
12890]
gi|445637348|gb|ELY90499.1| transcription termination factor Tfs [Natrinema altunense JCM
12890]
Length = 102
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q+RSADE +T FF CT+C
Sbjct: 56 PETDAICPECGNDRAHWYMQQIRSADESETRFFICTEC 93
>gi|448342922|ref|ZP_21531865.1| transcription termination factor Tfs [Natrinema gari JCM 14663]
gi|445624312|gb|ELY77697.1| transcription termination factor Tfs [Natrinema gari JCM 14663]
Length = 102
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q+RSADE +T FF CT+C
Sbjct: 56 PETDAICPECGNDRAHWYMQQIRSADESETRFFICTEC 93
>gi|448366274|ref|ZP_21554528.1| transcription termination factor Tfs [Natrialba aegyptia DSM 13077]
gi|445654883|gb|ELZ07734.1| transcription termination factor Tfs [Natrialba aegyptia DSM 13077]
Length = 102
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q+RSADE +T FF CT+C
Sbjct: 56 PETDATCPECGNDRAYWYMQQIRSADESETRFFICTEC 93
>gi|152031672|sp|O27369.2|RPOM_METTH RecName: Full=DNA-directed RNA polymerase subunit M
Length = 104
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 30/125 (24%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC KCG ++ F +G KC G + + K + V E
Sbjct: 2 EFCPKCGAVM--FPSEGKFKCQC---------------GYEKDITDKLKDKYR----VSE 40
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
E++A+ TI F ++ P +C +C N + Q R ADE +T FF
Sbjct: 41 EVEAKETIIFTG---------DDVNTLPTTRVECPKCGNMEAFWWLQQTRRADESETRFF 91
Query: 132 TCTKC 136
CT+C
Sbjct: 92 RCTRC 96
>gi|448310737|ref|ZP_21500521.1| transcription termination factor Tfs [Natronolimnobius
innermongolicus JCM 12255]
gi|445607291|gb|ELY61178.1| transcription termination factor Tfs [Natronolimnobius
innermongolicus JCM 12255]
Length = 102
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q+R+ADE +T FF CT+C
Sbjct: 56 PETDAHCPECGNDRAHWYMQQIRAADESETRFFICTEC 93
>gi|409722961|ref|ZP_11270342.1| DNA-directed RNA-polymerase subunit M [Halococcus hamelinensis
100A6]
gi|448722712|ref|ZP_21705243.1| DNA-directed RNA-polymerase subunit M [Halococcus hamelinensis
100A6]
gi|445788849|gb|EMA39550.1| DNA-directed RNA-polymerase subunit M [Halococcus hamelinensis
100A6]
Length = 106
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P VE +C+ C ND Y Q SADE T FF CT+C
Sbjct: 61 PTVEIECEECGNDLAWYTIKQTGSADEPPTRFFKCTEC 98
>gi|403352044|gb|EJY75527.1| DNA-directed RNA polymerase subunit [Oxytricha trifallax]
Length = 106
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+E +C +C N + +Q+RSADE T F+ CTKC
Sbjct: 64 IEAECHKCGNRRAYFMQIQIRSADEPMTTFYKCTKC 99
>gi|406865033|gb|EKD18076.1| transcription elongation factor S-II [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 301
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 89 QKDKTEIADGPIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
QKD + A P+ E+ KC +C +SY+ Q RSADE T F CT C
Sbjct: 241 QKDNMKKAQVPMAEKSISDALKCGKCGQKKVSYSQAQTRSADEPMTTFCECTVC 294
>gi|320590308|gb|EFX02751.1| DNA-directed RNA polymerase 1 kda [Grosmannia clavigera kw1407]
Length = 122
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 13 FCSKCGTILPLF--DFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC+ CG +LP+ + + C C Q ++ K F L+
Sbjct: 9 FCTDCGNLLPMSKGSDRNRLVCRCCGAHNQDQSASQTIVTSS--NPKDFPSPLRQKLSTT 66
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+ + E+ K TE + C +C + + T Q+RSADEG T+F
Sbjct: 67 QSV-------------ERHKVSTEA----VTTETCPKCGRTEVRFTTAQIRSADEGSTVF 109
Query: 131 FTC 133
F C
Sbjct: 110 FHC 112
>gi|84490030|ref|YP_448262.1| RpoM2 [Methanosphaera stadtmanae DSM 3091]
gi|84373349|gb|ABC57619.1| RpoM2 [Methanosphaera stadtmanae DSM 3091]
Length = 105
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 31/126 (24%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC CG +L KG + CY C N + +
Sbjct: 2 EFCPNCGKVL--LPKKGILHCYGC----------------------------NYEKKLSD 31
Query: 72 EIKAEYTIHFNTVEKEKQ-KDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+ K +Y I+ + +K+ I P C RC N + + +Q+ +DE +T F
Sbjct: 32 DEKQDYVINKDVSDKQNIIVTDDSINTHPTTRGLCYRCGNRELEWWMVQMHRSDEAETRF 91
Query: 131 FTCTKC 136
+ CTKC
Sbjct: 92 YRCTKC 97
>gi|353235706|emb|CCA67715.1| probable RPA12-13.7 kD subunit of DNA-directed RNA polymerase I
[Piriformospora indica DSM 11827]
Length = 127
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 81 FNTVEKEKQKDKT----EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
F + K+++K +T E+ PI CK C +D QLRSADEG TIF C +C
Sbjct: 60 FPSELKQRRKMQTRFQEEVETRPIETITCKNCGHDKGYTMEKQLRSADEGSTIFTECVRC 119
>gi|410671532|ref|YP_006923903.1| DNA-directed RNA polymerase, subunit M [Methanolobus psychrophilus
R15]
gi|409170660|gb|AFV24535.1| DNA-directed RNA polymerase, subunit M [Methanolobus psychrophilus
R15]
Length = 106
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +C C ++ + QLRSADE +T FF CTKC
Sbjct: 61 PTTSVRCDECGHNVAYWWLRQLRSADESETRFFKCTKC 98
>gi|222479401|ref|YP_002565638.1| transcription factor TFIIS [Halorubrum lacusprofundi ATCC 49239]
gi|222452303|gb|ACM56568.1| Transcription factor TFIIS [Halorubrum lacusprofundi ATCC 49239]
Length = 108
Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 83 TVEKEKQKDKTEIADG-----PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
T E + + + +++D P C C ND + Q+RSADE +T FF CT+C
Sbjct: 41 TTESQVESEVIDVSDAEDKGLPKTTAHCPECGNDRAYWYMQQIRSADESETRFFVCTEC 99
>gi|448455941|ref|ZP_21594873.1| transcription factor TFIIS [Halorubrum lipolyticum DSM 21995]
gi|448470477|ref|ZP_21600484.1| transcription factor TFIIS [Halorubrum kocurii JCM 14978]
gi|445808041|gb|EMA58118.1| transcription factor TFIIS [Halorubrum kocurii JCM 14978]
gi|445813160|gb|EMA63142.1| transcription factor TFIIS [Halorubrum lipolyticum DSM 21995]
Length = 108
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 83 TVEKEKQKDKTEIADG-----PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
T E + + + +++D P C C ND + Q+RSADE +T FF CT+C
Sbjct: 41 TTESQVESEVIDVSDAEDKGLPKTTAHCPECGNDRAYWYMQQIRSADESETRFFVCTEC 99
>gi|167520890|ref|XP_001744784.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777115|gb|EDQ90733.1| predicted protein [Monosiga brevicollis MX1]
Length = 109
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ E C +C+++ SY Q RSADE T+F+ C KC
Sbjct: 65 MTEADCPKCHHNRASYVQQQTRSADEPSTVFYCCEKC 101
>gi|435846111|ref|YP_007308361.1| DNA-directed RNA polymerase, subunit M [Natronococcus occultus SP4]
gi|433672379|gb|AGB36571.1| DNA-directed RNA polymerase, subunit M [Natronococcus occultus SP4]
Length = 102
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 75 AEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
AEYT+ + E + + +E P + C C ND + Q+R+ADE +T FF CT
Sbjct: 33 AEYTVTEDQ-EASEVIESSEETSLPETDATCPECGNDRAYWYMQQIRAADESETRFFICT 91
Query: 135 KC 136
C
Sbjct: 92 DC 93
>gi|147919536|ref|YP_686724.1| transcription factor S [Methanocella arvoryzae MRE50]
gi|110622120|emb|CAJ37398.1| archaeal transcription factor S [Methanocella arvoryzae MRE50]
Length = 106
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 30/126 (23%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC KC +I+ G VKC C Q ++ GP +
Sbjct: 2 EFCPKCKSIM-RPGGGGMVKCRKCGHEKKAQAGNMIVGGP------------------VK 42
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVER-KCKRCNNDTMSYATLQLRSADEGQTIF 130
+ + E T+ D+ + A P E KC C N + QLRSADE + F
Sbjct: 43 DQEREITVL----------DEKQDAGLPTTEEVKCPDCGNQKAYWWMRQLRSADESEVRF 92
Query: 131 FTCTKC 136
F CT+C
Sbjct: 93 FRCTEC 98
>gi|221052618|ref|XP_002261032.1| transcription factor IIS [Plasmodium knowlesi strain H]
gi|194247036|emb|CAQ38220.1| transcription factor IIS, putative [Plasmodium knowlesi strain H]
Length = 424
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
I KC C ND + + +Q RSADEG TI + C C
Sbjct: 380 ITYEKCTDCGNDFLHFINIQTRSADEGSTIIYFCPNC 416
>gi|219852680|ref|YP_002467112.1| transcription termination factor Tfs [Methanosphaerula palustris
E1-9c]
gi|219546939|gb|ACL17389.1| transcription termination factor Tfs [Methanosphaerula palustris
E1-9c]
Length = 103
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E+A P KC C ++ + QLRSADE + FF C KC
Sbjct: 53 EVATKPTFAIKCPECEHNLAFWWMRQLRSADESEVRFFKCVKC 95
>gi|396461030|ref|XP_003835127.1| similar to DNA-directed RNA polymerase III subunit RPC10
[Leptosphaeria maculans JN3]
gi|312211677|emb|CBX91762.1| similar to DNA-directed RNA polymerase III subunit RPC10
[Leptosphaeria maculans JN3]
Length = 108
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 106 KRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++C ND + LQ+RSADE T F+ CTKC
Sbjct: 72 EKCRNDEAYWYQLQIRSADEPMTAFYKCTKC 102
>gi|156093906|ref|XP_001612991.1| transcription factor [Plasmodium vivax Sal-1]
gi|148801865|gb|EDL43264.1| transcription factor, putative [Plasmodium vivax]
Length = 106
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +D + +LQ+RSADE T+F+ C KC
Sbjct: 69 CPKCTHDEAYFYSLQIRSADEPSTLFYICVKC 100
>gi|403419783|emb|CCM06483.1| predicted protein [Fibroporia radiculosa]
Length = 374
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 54/129 (41%), Gaps = 28/129 (21%)
Query: 13 FCSKCGTILPLF-DFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC CGT+L L D +V C C G +E P F +R A +E
Sbjct: 13 FCPDCGTLLNLPQDGDLEVPCEQC----GYKE-------PASCFTRR---------AAYE 52
Query: 72 EIKAEYTIH---FNTVEKEKQKDKTEIADGP----IVERKCKRCNNDTMSYATLQLRSAD 124
I+ H F + +K+K +T + D V KC C + QLRSAD
Sbjct: 53 NIEIVTRSHPDAFPSPLLQKRKTQTRVHDANEALLKVTEKCPECGHMEAYSQEAQLRSAD 112
Query: 125 EGQTIFFTC 133
EG TIF+T
Sbjct: 113 EGSTIFYTV 121
>gi|156094625|ref|XP_001613349.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802223|gb|EDL43622.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 454
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
I KC C ND + + +Q RSADEG TI + C C
Sbjct: 410 ITYEKCTDCGNDFLHFINIQTRSADEGSTIIYFCPNC 446
>gi|347522734|ref|YP_004780304.1| transcription termination factor Tfs [Pyrolobus fumarii 1A]
gi|343459616|gb|AEM38052.1| transcription termination factor Tfs [Pyrolobus fumarii 1A]
Length = 114
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +C RC++D Y +Q R ADE T F+ CTKC
Sbjct: 69 PKTRIQCPRCSHDEAYYWVVQTRRADEPPTRFYKCTKC 106
>gi|170097063|ref|XP_001879751.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645154|gb|EDR09402.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 106
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 96 ADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A + C +CN+D + LQ+RSADE T F+ CT C
Sbjct: 59 AHADQTQASCDKCNHDQAYFYQLQIRSADEPMTTFYRCTSC 99
>gi|124485273|ref|YP_001029889.1| DNA-directed RNA polymerase, subunit M [Methanocorpusculum
labreanum Z]
gi|124362814|gb|ABN06622.1| DNA-directed RNA polymerase, subunit M [Methanocorpusculum
labreanum Z]
Length = 96
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 93 TEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++ P + KC C + + QLRSADE + FF CTKC
Sbjct: 45 ADMGTKPTIAIKCPNCGHGIAEWWLRQLRSADESEVRFFRCTKC 88
>gi|313232154|emb|CBY09265.1| unnamed protein product [Oikopleura dioica]
Length = 91
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 88 KQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K+KD + G C +C + T+QLRSADEGQT F+ C KC
Sbjct: 37 KKKDDGNL--GQETSHLCSKCGHMFAWLKTMQLRSADEGQTCFYRCQKC 83
>gi|367022660|ref|XP_003660615.1| hypothetical protein MYCTH_2035701, partial [Myceliophthora
thermophila ATCC 42464]
gi|347007882|gb|AEO55370.1| hypothetical protein MYCTH_2035701, partial [Myceliophthora
thermophila ATCC 42464]
Length = 119
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 20/123 (16%)
Query: 13 FCSKCGTILPLF--DFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC+ CG +LP K + C C +E QP F L++
Sbjct: 9 FCTDCGNLLPPSKGSEKNILHCDCCGAE--NREDQPWKTVTTRTKPSDFPSALRQKLSIV 66
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+ + E+ K +TE D +C +C + Y+ +Q RSADEG TI
Sbjct: 67 QTV-------------ERHKVQTERID---ANTECPKCGKTGVRYSEVQQRSADEGSTII 110
Query: 131 FTC 133
+ C
Sbjct: 111 YNC 113
>gi|448397335|ref|ZP_21569456.1| transcription termination factor Tfs [Haloterrigena limicola JCM
13563]
gi|445672972|gb|ELZ25540.1| transcription termination factor Tfs [Haloterrigena limicola JCM
13563]
Length = 102
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q+RSADE +T FF CT+C
Sbjct: 56 PETDAICPECGNDRAYWYMQQIRSADESETRFFICTEC 93
>gi|169617173|ref|XP_001802001.1| hypothetical protein SNOG_11763 [Phaeosphaeria nodorum SN15]
gi|160703355|gb|EAT80807.2| hypothetical protein SNOG_11763 [Phaeosphaeria nodorum SN15]
Length = 118
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 106 KRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++C ND + LQ+RSADE T F+ CTKC
Sbjct: 82 EKCRNDEAYWYQLQIRSADEPMTAFYKCTKC 112
>gi|124505291|ref|XP_001351387.1| transcription factor, putative [Plasmodium falciparum 3D7]
gi|6562711|emb|CAB62850.1| transcription factor, putative [Plasmodium falciparum 3D7]
Length = 320
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
I KC C ND + + +Q RSADEG TI + C C
Sbjct: 276 ITYEKCLDCGNDFLHFINIQTRSADEGSTIIYFCPNC 312
>gi|402467838|gb|EJW03076.1| hypothetical protein EDEG_02555 [Edhazardia aedis USNM 41457]
Length = 46
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++KC +CN + Y +Q RSADE TIF+ C +C
Sbjct: 5 AQKKCVKCNCEIAMYIEMQTRSADEPMTIFYQCVEC 40
>gi|409074516|gb|EKM74912.1| hypothetical protein AGABI1DRAFT_65164 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426193616|gb|EKV43549.1| hypothetical protein AGABI2DRAFT_227329 [Agaricus bisporus var.
bisporus H97]
Length = 106
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 96 ADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A + C +CN+D + LQ+RSADE T F+ CT C
Sbjct: 59 AHADQTQASCDKCNHDRAYFYQLQIRSADEPMTTFYRCTNC 99
>gi|358338299|dbj|GAA56632.1| DNA-directed RNA polymerase III subunit RPC10 [Clonorchis sinensis]
Length = 763
Score = 39.3 bits (90), Expect = 0.58, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+E KC +C ++ + +Q RSADE T ++C KC
Sbjct: 721 IEEKCPKCGHNRAYFVQMQTRSADEPSTTKYSCMKC 756
>gi|440635975|gb|ELR05894.1| hypothetical protein GMDG_07667 [Geomyces destructans 20631-21]
Length = 121
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 22/123 (17%)
Query: 13 FCSKCGTIL--PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC+ CG +L D + C C T Q +L K + F ++
Sbjct: 9 FCTDCGNLLESSTGDANTLLTCACCGTENRDTSLQTVLT----------KTKASSFPSLL 58
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
++++ TVE + ++ + C C+ + + Y +LQLR ADEG T F
Sbjct: 59 RQMRS----AVQTVEMSDRDNE------ATAMQTCPECDRNEVKYQSLQLRGADEGSTNF 108
Query: 131 FTC 133
+TC
Sbjct: 109 YTC 111
>gi|320588310|gb|EFX00779.1| transcription elongation factor s 2 [Grosmannia clavigera kw1407]
Length = 332
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 78 TIHFNTVEKEKQKDKTEIADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFF 131
+ H +E + QK+ + A P+ E+ C +C +SY Q RSADE T F
Sbjct: 261 SAHLKQLESDLQKENMKKAQVPMTEKSISDALTCGKCKQRKVSYTQAQTRSADEPMTTFC 320
Query: 132 TCTKC 136
CT C
Sbjct: 321 ECTVC 325
>gi|448320129|ref|ZP_21509617.1| transcription termination factor Tfs [Natronococcus amylolyticus
DSM 10524]
gi|445606535|gb|ELY60439.1| transcription termination factor Tfs [Natronococcus amylolyticus
DSM 10524]
Length = 102
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 75 AEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
AEYT+ + E + + +E P + C C +D + Q+RSADE +T FF C+
Sbjct: 33 AEYTL-TDDQEASEVIESSEETSLPETDAHCPECGHDRAYWYMQQIRSADESETRFFICS 91
Query: 135 KC 136
+C
Sbjct: 92 EC 93
>gi|282164986|ref|YP_003357371.1| transcription factor S [Methanocella paludicola SANAE]
gi|282157300|dbj|BAI62388.1| archaeal transcription factor S [Methanocella paludicola SANAE]
Length = 94
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 94 EIADGPIVE-RKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E A P E +KC C N + QLRSADE + FF CT+C
Sbjct: 43 EAAGLPTTEDQKCPDCGNQKAYWWMRQLRSADESEVRFFRCTQC 86
>gi|396465380|ref|XP_003837298.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
maculans JN3]
gi|312213856|emb|CBX93858.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
maculans JN3]
Length = 121
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 81 FNTVEKEKQKDKTEIADGPI-----VERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
F + + K+ + I +G I ++ C C + Y T QLRSADEG T+F+ C
Sbjct: 54 FPSALRAKRSEVQVIVEGDIQTTSEIDHPCDECGRPKVRYYTQQLRSADEGSTVFYEC 111
>gi|330834287|ref|YP_004409015.1| DNA-directed RNA polymerase subunit M [Metallosphaera cuprina Ar-4]
gi|329566426|gb|AEB94531.1| DNA-directed RNA polymerase, subunit M [Metallosphaera cuprina
Ar-4]
Length = 110
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 28/127 (22%)
Query: 12 EFCSKCGTILPLFDFKGDV--KCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAV 69
+FC KC +++ G+V KC C G +++ P + +
Sbjct: 2 KFCPKCKSMMTPRKINGNVIYKCVKC----GYEDEGP---------------RSQIISSK 42
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+ + E TI +E ++ T+ G + C +C ND + + LQ R+ADE T
Sbjct: 43 VKHSETERTI---VIEDQQLPAGTQKMRGVL----CSKCGNDEVYFWMLQTRAADEPPTR 95
Query: 130 FFTCTKC 136
F+ CT+C
Sbjct: 96 FYKCTRC 102
>gi|82596259|ref|XP_726187.1| transcription factor [Plasmodium yoelii yoelii 17XNL]
gi|23481491|gb|EAA17752.1| putative transcription factor [Plasmodium yoelii yoelii]
Length = 383
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
I KC C++D + + +Q RSADEG TI + C C
Sbjct: 339 ITYEKCTDCDHDFLYFVNIQTRSADEGSTIIYYCPNC 375
>gi|448936359|gb|AGE59907.1| transcription elongation factor S-II [Acanthocystis turfacea
Chlorella virus TN603.4.2]
Length = 185
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ DG + +C++C + SY LQ RSADE T+F C +C
Sbjct: 137 DPKDMPDGML---QCRKCGSKKTSYYELQTRSADEPMTVFARCHEC 179
>gi|167535081|ref|XP_001749215.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772368|gb|EDQ86021.1| predicted protein [Monosiga brevicollis MX1]
Length = 286
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 84 VEKEKQKDKTEIADGPIVER-KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+EK +A+G ++ C RC SY +Q RSADE TIF +C KC
Sbjct: 227 LEKASHDRALAVAEGASTDQLVCPRCKARDASYTEVQTRSADEPMTIFASCKKC 280
>gi|432331652|ref|YP_007249795.1| transcription factor S, archaeal [Methanoregula formicicum SMSP]
gi|432138361|gb|AGB03288.1| transcription factor S, archaeal [Methanoregula formicicum SMSP]
Length = 104
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + KC +C N+ + QLR+ADE + FF CT+C
Sbjct: 59 PTTQIKCPKCGNNLAFWWLRQLRAADESEVRFFKCTEC 96
>gi|448925723|gb|AGE49302.1| transcription elongation factor S-II [Acanthocystis turfacea
Chlorella virus Br0604L]
Length = 185
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ DG + +C++C + SY LQ RSADE T+F C +C
Sbjct: 137 DPKDMPDGML---QCRKCGSKKTSYYELQTRSADEPMTVFARCHEC 179
>gi|68066450|ref|XP_675208.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56494258|emb|CAH95322.1| conserved hypothetical protein [Plasmodium berghei]
Length = 274
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
I KC C++D + + +Q RSADEG TI + C C
Sbjct: 230 ITYEKCTDCDHDFLYFVNIQTRSADEGSTIIYFCPNC 266
>gi|70922110|ref|XP_734273.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56506861|emb|CAH84994.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 183
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E A I KC C +D + + +Q RSADEG TI + C C
Sbjct: 133 ENAAYNITYEKCTDCGHDFLYFVNIQTRSADEGSTIIYFCPNC 175
>gi|156084192|ref|XP_001609579.1| transcription factor S-II protein [Babesia bovis T2Bo]
gi|154796831|gb|EDO06011.1| transcription factor S-II protein, putative [Babesia bovis]
Length = 109
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E P + C C+N + ++Q RSADE T FF CT C
Sbjct: 61 EFEHAPKIIAVCPSCHNKEAYFMSIQTRSADEPMTQFFVCTAC 103
>gi|300708714|ref|XP_002996531.1| hypothetical protein NCER_100370 [Nosema ceranae BRL01]
gi|239605840|gb|EEQ82860.1| hypothetical protein NCER_100370 [Nosema ceranae BRL01]
Length = 105
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 82 NTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
N + +K + E E+KC +C+++ + LQ RSADE TIF+ C C
Sbjct: 44 NVIAVDKVLGEDEYKYASTCEKKCIKCDSNKALFMELQTRSADEPMTIFYECVLC 98
>gi|146393742|ref|YP_293859.2| transcription factor S-II (TFIIS) family protein [Emiliania huxleyi
virus 86]
gi|83999134|emb|CAI65528.2| transcription factor S-II (TFIIS) family protein [Emiliania huxleyi
virus 86]
gi|283481322|emb|CAZ69438.1| transcription factor S-II (TFIIS) family protein [Emiliania huxleyi
virus 99B1]
gi|347481672|gb|AEO97658.1| transcription factor S-II family protein [Emiliania huxleyi virus
84]
Length = 150
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C + + A Q RSADEG T+FF C KC
Sbjct: 112 CNKCGSSEILMAMAQTRSADEGTTMFFRCVKC 143
>gi|395646358|ref|ZP_10434218.1| transcription termination factor Tfs [Methanofollis liminatans DSM
4140]
gi|395443098|gb|EJG07855.1| transcription termination factor Tfs [Methanofollis liminatans DSM
4140]
Length = 104
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ P + +C +C N+ + QLRSADE + FF CT C
Sbjct: 51 DDDKVNTLPTITVRCPKCENNLAFWWLRQLRSADESEVRFFRCTGC 96
>gi|393216306|gb|EJD01796.1| hypothetical protein FOMMEDRAFT_20569 [Fomitiporia mediterranea
MF3/22]
Length = 106
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C+ND + LQ+RSADE T F+ CT C
Sbjct: 68 CPKCDNDRAYFYQLQIRSADEPMTTFYRCTTC 99
>gi|449441244|ref|XP_004138392.1| PREDICTED: transcription elongation factor A protein 3-like
[Cucumis sativus]
Length = 369
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 73 IKAEYTIHFNTVE---KEKQKDKTEIADGPIV--ER-----------KCKRCNNDTMSYA 116
IK E I+ +T + +++++ EIA + ER KC RC +Y
Sbjct: 283 IKPERMINMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYY 342
Query: 117 TLQLRSADEGQTIFFTCTKC 136
LQ RSADE T F TC C
Sbjct: 343 QLQTRSADEPMTTFVTCVNC 362
>gi|148643414|ref|YP_001273927.1| DNA-directed RNA polymerase subunit M, RpoM [Methanobrevibacter
smithii ATCC 35061]
gi|222445656|ref|ZP_03608171.1| hypothetical protein METSMIALI_01297 [Methanobrevibacter smithii
DSM 2375]
gi|261349796|ref|ZP_05975213.1| transcription factor S [Methanobrevibacter smithii DSM 2374]
gi|148552431|gb|ABQ87559.1| DNA-directed RNA polymerase subunit M, RpoM [Methanobrevibacter
smithii ATCC 35061]
gi|222435221|gb|EEE42386.1| transcription factor S [Methanobrevibacter smithii DSM 2375]
gi|288860580|gb|EFC92878.1| transcription factor S [Methanobrevibacter smithii DSM 2374]
Length = 104
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 74 KAEYTIHFNTVEKEKQKDKTEIADG-PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
K+EY ++ E + +K E + P + C C + S+ Q RSADE +T FF
Sbjct: 33 KSEYNVNEKIKENDSVIEKGEDVNTLPTTKAVCPECGHTEASWWLQQTRSADEAETRFFK 92
Query: 133 CTKC 136
C KC
Sbjct: 93 CLKC 96
>gi|388254857|gb|AFK24971.1| putative transcription termination factor TFIIS [uncultured
archaeon]
Length = 89
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +C +C N + LQ RSADE T F+ CTKC
Sbjct: 44 PTTSIECPQCKNGMAFWWMLQTRSADEATTQFYRCTKC 81
>gi|347482173|gb|AEO98114.1| transcription factor S-II family protein [Emiliania huxleyi virus
203]
gi|347600557|gb|AEP15044.1| transcription factor S-II family protein [Emiliania huxleyi virus
88]
gi|347601161|gb|AEP15647.1| transcription factor S-II family protein [Emiliania huxleyi virus
207]
gi|347601635|gb|AEP16120.1| transcription factor S-II family protein [Emiliania huxleyi virus
208]
gi|357972718|gb|AET97991.1| transcription factor S-II family protein [Emiliania huxleyi virus
201]
Length = 168
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C + + A Q RSADEG T+FF C KC
Sbjct: 130 CNKCGSSEILMAMAQTRSADEGTTMFFRCVKC 161
>gi|440494268|gb|ELQ76667.1| RNA polymerase III subunit C11, partial [Trachipleistophora
hominis]
Length = 58
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 102 ERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E+ C++C +T S+ +Q RSADE TIF+ C +C
Sbjct: 24 EKICEKCGYNTASFYEMQTRSADEPMTIFYQCLQC 58
>gi|337284503|ref|YP_004623977.1| DNA-directed RNA polymerase subunit M [Pyrococcus yayanosii CH1]
gi|334900437|gb|AEH24705.1| DNA-directed RNA polymerase subunit M [Pyrococcus yayanosii CH1]
Length = 110
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 25/125 (20%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
+FC KCG+I+ KG C C G +E + P+ R E
Sbjct: 3 KFCPKCGSIMVPDKNKGVFVCRRC----GYEEP----INPEDAKAYRRT----------E 44
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
E+K VE+E ++ P + C +C ++ + LQ R+ DE TIFF
Sbjct: 45 EVKHRPDEGVIVVEQE-------LSTLPTAKVTCPKCGHNEAYWWELQTRAGDEPSTIFF 97
Query: 132 TCTKC 136
C +C
Sbjct: 98 KCKRC 102
>gi|448926050|gb|AGE49628.1| transcription elongation factor S-II [Acanthocystis turfacea
Chlorella virus Can0610SP]
Length = 221
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ DG + +C++C + SY LQ RSADE T+F C +C
Sbjct: 173 DPKDMPDGML---QCRKCGSKKTSYYELQTRSADEPMTVFARCHEC 215
>gi|290985184|ref|XP_002675306.1| predicted protein [Naegleria gruberi]
gi|284088901|gb|EFC42562.1| predicted protein [Naegleria gruberi]
Length = 109
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIAD-GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
IK+E N +KE + A+ VE KC +C+++ + Q RSADE T FF
Sbjct: 38 IKSEMYFDMNLEKKEVDDVIDDEANWSETVETKCGKCDHNKAYFQMFQTRSADEPMTQFF 97
Query: 132 TCTKC 136
C KC
Sbjct: 98 KCCKC 102
>gi|71032861|ref|XP_766072.1| transcription elongation factor SII [Theileria parva strain Muguga]
gi|68353029|gb|EAN33789.1| transcription elongation factor SII, putative [Theileria parva]
Length = 324
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC +CN+ +Y LQ RS+DE T F TC C
Sbjct: 286 KCNKCNSKVTTYYQLQTRSSDEPMTTFVTCLNC 318
>gi|449499153|ref|XP_004160740.1| PREDICTED: transcription elongation factor A protein 2-like
[Cucumis sativus]
Length = 290
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 73 IKAEYTIHFNTVE---KEKQKDKTEIADGPIV--ER-----------KCKRCNNDTMSYA 116
IK E I+ +T + +++++ EIA + ER KC RC +Y
Sbjct: 204 IKPERMINMSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYY 263
Query: 117 TLQLRSADEGQTIFFTCTKC 136
LQ RSADE T F TC C
Sbjct: 264 QLQTRSADEPMTTFVTCVNC 283
>gi|378755807|gb|EHY65833.1| hypothetical protein NERG_01440 [Nematocida sp. 1 ERTm2]
Length = 102
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C C+ +T +Y +Q RSADE TIF TCT+C
Sbjct: 65 CPECSCETANYYQMQTRSADEPMTIFNTCTQC 96
>gi|70606013|ref|YP_254883.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius DSM 639]
gi|68566661|gb|AAY79590.1| DNA-directed RNA polymerase subunit M [Sulfolobus acidocaldarius
DSM 639]
Length = 100
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C C ND + LQ RSADE T F+ CTKC
Sbjct: 61 CPSCGNDEAYFWILQTRSADEPATRFYKCTKC 92
>gi|389852512|ref|YP_006354746.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. ST04]
gi|388249818|gb|AFK22671.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. ST04]
Length = 110
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C RC ++ + LQ R+ DE TIF+ C KC
Sbjct: 65 PTAKVTCPRCGHNEAWWWELQTRAGDEPSTIFYKCKKC 102
>gi|221053187|ref|XP_002257968.1| transcription factor [Plasmodium knowlesi strain H]
gi|193807800|emb|CAQ38505.1| transcription factor, putative [Plasmodium knowlesi strain H]
Length = 106
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +D + ++Q+RSADE T+F+ C KC
Sbjct: 69 CPKCTHDEAYFYSMQIRSADEPSTLFYICIKC 100
>gi|156086858|ref|XP_001610836.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798089|gb|EDO07268.1| conserved hypothetical protein [Babesia bovis]
Length = 256
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+V++ C C + Y+T Q RSADEG T+ + C +C
Sbjct: 212 VVKQLCDNCGFEEAYYSTFQARSADEGMTVMYECKRC 248
>gi|238598946|ref|XP_002394740.1| hypothetical protein MPER_05318 [Moniliophthora perniciosa FA553]
gi|215464278|gb|EEB95670.1| hypothetical protein MPER_05318 [Moniliophthora perniciosa FA553]
Length = 70
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +CNN + LQ+RSADE T F+ CT C
Sbjct: 32 CPKCNNGQAYFYQLQIRSADEPMTTFYRCTAC 63
>gi|401413534|ref|XP_003886214.1| putative RNA polymerase [Neospora caninum Liverpool]
gi|325120634|emb|CBZ56188.1| putative RNA polymerase [Neospora caninum Liverpool]
Length = 324
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
G I + C+ C + ++T Q RSADEG T+ + C KC
Sbjct: 278 GVICKETCEACGHGEAFFSTFQARSADEGMTVMYECVKC 316
>gi|304315435|ref|YP_003850582.1| DNA-directed RNA polymerase, subunit M [Methanothermobacter
marburgensis str. Marburg]
gi|302588894|gb|ADL59269.1| predicted DNA-directed RNA polymerase, subunit M
[Methanothermobacter marburgensis str. Marburg]
Length = 104
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 60 KGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKT-----EIADGPIVERKCKRCNNDTMS 114
KG F+ ++I + +N E+ + KD +++ P +C +C N
Sbjct: 15 KGKFSCQCGYEKDITDKLKDKYNFSEEVESKDNVIFTGDDVSTLPTTRVECPKCGNMEAF 74
Query: 115 YATLQLRSADEGQTIFFTCTKC 136
+ Q R ADE +T FF CT+C
Sbjct: 75 WWLQQTRRADESETRFFRCTRC 96
>gi|195622302|gb|ACG32981.1| transcription elongation factor A protein 2 [Zea mays]
gi|223947497|gb|ACN27832.1| unknown [Zea mays]
gi|413932648|gb|AFW67199.1| transcription elongation factor A protein 2 [Zea mays]
Length = 368
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 329 KCARCGQRKTTYYQLQTRSADEPMTTFVTCVNC 361
>gi|357289731|gb|AET73044.1| transcription elongation factor A [Phaeocystis globosa virus 12T]
gi|357292531|gb|AET73867.1| transcription elongation factor A 1 [Phaeocystis globosa virus 14T]
Length = 173
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 46 PLLLGPDILFLKRFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDK-TEIADGPIVERK 104
P LL D + K K H F+ EE++ + ++K K ++K + + E
Sbjct: 79 PELL--DKITSKTIKAHLIAFMT-HEELRPDLWEELIAIKKMKDENKFSPKIEASTDEFT 135
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C + +Y LQ RSADE T F TC C
Sbjct: 136 CFKCKENKCTYYQLQTRSADESMTTFVTCIPC 167
>gi|449066209|ref|YP_007433291.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius N8]
gi|449068485|ref|YP_007435566.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius Ron12/I]
gi|73920769|sp|Q07271.2|RPOM_SULAC RecName: Full=DNA-directed RNA polymerase subunit M
gi|449034717|gb|AGE70143.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius N8]
gi|449036993|gb|AGE72418.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius Ron12/I]
Length = 111
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C C ND + LQ RSADE T F+ CTKC
Sbjct: 72 CPSCGNDEAYFWILQTRSADEPATRFYKCTKC 103
>gi|448733443|ref|ZP_21715688.1| DNA-directed RNA-polymerase subunit M [Halococcus salifodinae DSM
8989]
gi|445803177|gb|EMA53477.1| DNA-directed RNA-polymerase subunit M [Halococcus salifodinae DSM
8989]
Length = 106
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P E +C C ND Y Q SADE T FF CT+C
Sbjct: 61 PTAEVECDDCGNDRAWYTIKQTGSADEPPTRFFKCTEC 98
>gi|642273|emb|CAA50073.1| transcription associated protein [Sulfolobus acidocaldarius]
Length = 111
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C C ND + LQ RSADE T F+ CTKC
Sbjct: 72 CPSCGNDEAYFWILQTRSADEPATRFYKCTKC 103
>gi|284998325|ref|YP_003420093.1| transcription factor S [Sulfolobus islandicus L.D.8.5]
gi|284446221|gb|ADB87723.1| transcription factor S [Sulfolobus islandicus L.D.8.5]
Length = 111
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKT---EIADGPIVERK-----CKRCNNDTMSYATLQLR 121
+EE E TI + K K+KT E + P +K C C ND + LQ R
Sbjct: 29 YEEEVPETTIVVTSKVKHSTKEKTLILEEEEMPSGAQKIKGVLCPSCKNDEAYFWILQTR 88
Query: 122 SADEGQTIFFTCTKC 136
ADE T F+ CTKC
Sbjct: 89 RADEPPTRFYKCTKC 103
>gi|226504526|ref|NP_001149284.1| transcription elongation factor A protein 2 [Zea mays]
gi|195626030|gb|ACG34845.1| transcription elongation factor A protein 2 [Zea mays]
Length = 368
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 329 KCARCGQRKTTYYQLQTRSADEPMTTFVTCVNC 361
>gi|402223920|gb|EJU03983.1| hypothetical protein DACRYDRAFT_63561 [Dacryopinax sp. DJM-731 SS1]
Length = 108
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 76 EYTIHFNTVEKEKQKDK---------TEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
E+ IH + + K K D C++C ND + LQ+RSADE
Sbjct: 30 EFPIHKQMSSRTRLKRKEVDDVLGGEAAWKDADSTSASCEKCGNDKAYFMQLQIRSADEP 89
Query: 127 QTIFFTCTK 135
T F+ CT+
Sbjct: 90 MTTFYRCTR 98
>gi|448933550|gb|AGE57106.1| transcription elongation factor S-II [Acanthocystis turfacea
Chlorella virus NE-JV-3]
Length = 221
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ DG + C++C + SY LQ RSADE T+F C +C
Sbjct: 173 DPKDMPDGMLT---CRKCGSKKTSYYELQTRSADEPMTVFARCHEC 215
>gi|448730238|ref|ZP_21712546.1| DNA-directed RNA-polymerase subunit M [Halococcus saccharolyticus
DSM 5350]
gi|445793406|gb|EMA43978.1| DNA-directed RNA-polymerase subunit M [Halococcus saccharolyticus
DSM 5350]
Length = 106
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 19/38 (50%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P E C C ND Y Q SADE T FF CT+C
Sbjct: 61 PTAEVACDECGNDRAWYTIKQTGSADEPPTRFFKCTEC 98
>gi|342186130|emb|CCC95615.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
Length = 143
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 55/139 (39%), Gaps = 20/139 (14%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDV---KCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHF 63
F + S C CG +PL KC +C Y + P+++ + H
Sbjct: 8 FALGSRCCVVCGHWVPLRSKDKPTIAGKCALC--GYALPIEPPIIVE---------EAHM 56
Query: 64 NLFLAVF---EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERK--CKRCN-NDTMSYAT 117
N AV EEIK + D VE + C++C +
Sbjct: 57 NTAAAVLFTSEEIKMVQESVRQHLGNASSCDAFRTHTDNRVEEEVYCEKCAAHRRCKMFA 116
Query: 118 LQLRSADEGQTIFFTCTKC 136
Q+RSADEGQTIF+ CTKC
Sbjct: 117 RQIRSADEGQTIFYQCTKC 135
>gi|413932649|gb|AFW67200.1| hypothetical protein ZEAMMB73_561219 [Zea mays]
Length = 246
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 207 KCARCGQRKTTYYQLQTRSADEPMTTFVTCVNC 239
>gi|84998998|ref|XP_954220.1| transcription elongation factor [Theileria annulata]
gi|65305218|emb|CAI73543.1| transcription elongation factor, putative [Theileria annulata]
Length = 418
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC +CN+ +Y LQ RS+DE T F TC C
Sbjct: 380 KCNKCNSKITTYYQLQTRSSDEPMTTFVTCLNC 412
>gi|448932235|gb|AGE55795.1| transcription elongation factor S-II [Acanthocystis turfacea
Chlorella virus MN0810.1]
Length = 184
Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D + DG + +CK+C + SY LQ RSADE T+F C C
Sbjct: 136 DPETMPDGML---QCKKCGSKKTSYYELQTRSADEPMTVFARCHNC 178
>gi|315425737|dbj|BAJ47392.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
gi|315425785|dbj|BAJ47439.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
gi|315427642|dbj|BAJ49239.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
gi|343484624|dbj|BAJ50278.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
Length = 110
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 24/125 (19%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC KCG L G + Y Q+PL ++ L++ A+ E
Sbjct: 2 EFCPKCGKTLTPSRVGGKAMLVCKRCGY----QKPLEGEKVVIKLEKENTVSKNVAAIVE 57
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
+A + V C +C ++ + T+Q RSADE T FF
Sbjct: 58 AEEAPLPTTSDVV--------------------CPQCGHNEAKWWTVQTRSADEPMTQFF 97
Query: 132 TCTKC 136
C KC
Sbjct: 98 RCVKC 102
>gi|383319700|ref|YP_005380541.1| DNA-directed RNA polymerase subunit M [Methanocella conradii HZ254]
gi|379321070|gb|AFD00023.1| DNA-directed RNA polymerase, subunit M [Methanocella conradii
HZ254]
Length = 95
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC C N + QLRSADE + FF CT+C
Sbjct: 55 KCPECGNQKAYWWMRQLRSADESEVRFFRCTQC 87
>gi|332796909|ref|YP_004458409.1| transcription termination factor Tfs [Acidianus hospitalis W1]
gi|332694644|gb|AEE94111.1| transcription termination factor Tfs [Acidianus hospitalis W1]
Length = 100
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C C ND + LQ R+ADE T F+ CTKC
Sbjct: 61 CPNCKNDEAYFWILQTRAADEPATRFYKCTKC 92
>gi|225439709|ref|XP_002272768.1| PREDICTED: transcription elongation factor A protein 3 [Vitis
vinifera]
Length = 367
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 328 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 360
>gi|237836081|ref|XP_002367338.1| RNA polymerase, putative [Toxoplasma gondii ME49]
gi|211965002|gb|EEB00198.1| RNA polymerase, putative [Toxoplasma gondii ME49]
gi|221505981|gb|EEE31616.1| DNA-directed RNA polymerase I, putative [Toxoplasma gondii VEG]
Length = 348
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
G + + C+ C + ++T Q RSADEG T+ + C KC
Sbjct: 302 GVVCKETCEACGHGEAFFSTFQARSADEGMTVMYECVKC 340
>gi|68073273|ref|XP_678551.1| transcription factor [Plasmodium berghei strain ANKA]
gi|56499055|emb|CAI00136.1| transcription factor, putative [Plasmodium berghei]
Length = 106
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +D + +LQ+RSADE T+F+ C C
Sbjct: 69 CPKCTHDEAYFYSLQIRSADEPSTLFYICVNC 100
>gi|221484964|gb|EEE23254.1| DNA-directed RNA polymerase I, putative [Toxoplasma gondii GT1]
Length = 348
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
G + + C+ C + ++T Q RSADEG T+ + C KC
Sbjct: 302 GVVCKETCEACGHGEAFFSTFQARSADEGMTVMYECVKC 340
>gi|125557745|gb|EAZ03281.1| hypothetical protein OsI_25427 [Oryza sativa Indica Group]
Length = 373
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 334 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 366
>gi|297735532|emb|CBI18026.3| unnamed protein product [Vitis vinifera]
Length = 322
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 283 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 315
>gi|121702561|ref|XP_001269545.1| RNA polymerase III subunit C11, putative [Aspergillus clavatus NRRL
1]
gi|119397688|gb|EAW08119.1| RNA polymerase III subunit C11, putative [Aspergillus clavatus NRRL
1]
Length = 116
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 32 CYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKD 91
C C S +P P L + RF+ + + + + E TI ++
Sbjct: 5 CPNCGNSLTISRGEPTRDYP--LGVNRFECRTCPYQHILKNGRQEKTIMKQKEVEDVLGG 62
Query: 92 KTEIADGPIVERKC--KRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E A+ + +C + CN D + LQ+RSADE T F CT C
Sbjct: 63 KEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTC 109
>gi|23617251|dbj|BAC20918.1| putative transcription elongation factor [Oryza sativa Japonica
Group]
gi|125599607|gb|EAZ39183.1| hypothetical protein OsJ_23609 [Oryza sativa Japonica Group]
Length = 373
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 334 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 366
>gi|115471257|ref|NP_001059227.1| Os07g0229700 [Oryza sativa Japonica Group]
gi|113610763|dbj|BAF21141.1| Os07g0229700 [Oryza sativa Japonica Group]
gi|215737106|dbj|BAG96035.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 379
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 340 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 372
>gi|116196354|ref|XP_001223989.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88180688|gb|EAQ88156.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 139
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 13 FCSKCGTILP--LFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC+ CG +LP + K + C C G + + P R K + A+
Sbjct: 9 FCTDCGNLLPASMGSEKNILHCDCC----GAENRD----HPWKTVTTRTKPS-DFPSALR 59
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
+++ T+ + V+ E+ TE C +C + Y+ +Q RSADEG TI
Sbjct: 60 QKLSIVQTVERHKVQTERIDSNTE----------CPKCGKTGIRYSEVQQRSADEGSTII 109
Query: 131 FTC 133
+ C
Sbjct: 110 YNC 112
>gi|70935719|ref|XP_738907.1| transcription factor [Plasmodium chabaudi chabaudi]
gi|70948038|ref|XP_743577.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56515491|emb|CAH84203.1| transcription factor, putative [Plasmodium chabaudi chabaudi]
gi|56523140|emb|CAH77369.1| hypothetical protein PC000189.02.0 [Plasmodium chabaudi chabaudi]
Length = 106
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +D + +LQ+RSADE T+F+ C C
Sbjct: 69 CPKCTHDEAYFYSLQIRSADEPSTLFYICVNC 100
>gi|326436982|gb|EGD82552.1| hypothetical protein PTSG_03204 [Salpingoeca sp. ATCC 50818]
Length = 269
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC +C + + Y +QLR+ADE T+ TC KC
Sbjct: 231 KCGKCGKNDVEYYEVQLRAADEPMTVIATCIKC 263
>gi|405121407|gb|AFR96176.1| positive transcription elongation factor [Cryptococcus neoformans
var. grubii H99]
Length = 333
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC+ +Y +Q RSADE T F TCT C
Sbjct: 294 KCGRCHQRKCTYYQMQTRSADEPMTTFVTCTNC 326
>gi|194708758|gb|ACF88463.1| unknown [Zea mays]
Length = 376
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 328 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 360
>gi|16082042|ref|NP_394466.1| DNA-directed RNA polymerase subunit M [Thermoplasma acidophilum DSM
1728]
gi|10640321|emb|CAC12135.1| probable transcription-associated protein TFIIS [Thermoplasma
acidophilum]
Length = 100
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 79 IHFNTVEKEKQKDKTEIADGPI-VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
I + +KE K E++ P+ + C RC++ Y Q RSADE +T F+TC +C
Sbjct: 35 IVSKSADKETIMIKEEVSAEPLDSDAVCPRCHHKGARYVLKQTRSADEPETKFYTCEEC 93
>gi|401419461|ref|XP_003874220.1| putative RNA polymerase III C11 subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490455|emb|CBZ25715.1| putative RNA polymerase III C11 subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 151
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 17/140 (12%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLL----LGPDILFLKR-FKGHFNLFL 67
FCS ++P + V C C+ + P + G IL ++ F H +
Sbjct: 6 FCSTLLLVMPHVEGNALV-CATCRYVHSVASASPKIPRNEFGEPILTIQHSFVAHNRQIM 64
Query: 68 AVFEEIKAEYTI-------HFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMS----YA 116
E+ E H K +T G I C+ +N S +
Sbjct: 65 DAEEDPAMEAAALSSAAVCHTTAASAPVVKAETSAEGGQITTIPCQNEDNPCRSTKAYFI 124
Query: 117 TLQLRSADEGQTIFFTCTKC 136
+Q+RSADE T+FF C +C
Sbjct: 125 QIQMRSADEPATVFFKCVEC 144
>gi|289582404|ref|YP_003480870.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|448282173|ref|ZP_21473462.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|289531957|gb|ADD06308.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|445576807|gb|ELY31255.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
Length = 102
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C +D + Q+RSADE +T FF C++C
Sbjct: 56 PETDAHCPECGHDRAYWYMQQIRSADESETRFFICSEC 93
>gi|71408018|ref|XP_806438.1| RNA polymerase III C11 subunit [Trypanosoma cruzi strain CL Brener]
gi|70870187|gb|EAN84587.1| RNA polymerase III C11 subunit, putative [Trypanosoma cruzi]
Length = 122
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 94 EIADGPIVERKCKR----CNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E+ G ++ +C+ C+ + Y +Q+RSADE T FF C KC
Sbjct: 69 EVDGGQLITVRCQNDEKFCDGNRAHYVQIQMRSADEPATTFFKCLKC 115
>gi|242032519|ref|XP_002463654.1| hypothetical protein SORBIDRAFT_01g003660 [Sorghum bicolor]
gi|241917508|gb|EER90652.1| hypothetical protein SORBIDRAFT_01g003660 [Sorghum bicolor]
Length = 368
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 329 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 361
>gi|146304608|ref|YP_001191924.1| DNA-directed RNA polymerase M [Metallosphaera sedula DSM 5348]
gi|145702858|gb|ABP96000.1| DNA-directed RNA polymerase, subunit M [Metallosphaera sedula DSM
5348]
Length = 110
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C C ND + + LQ R+ADE T F+ CTKC
Sbjct: 71 CPNCRNDEVFFWMLQTRAADEPPTRFYKCTKC 102
>gi|388549029|gb|AFK66230.1| transcription elongation factor TFIIS [Ostreococcus lucimarinus
virus OlV3]
Length = 171
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C RC + SY LQ RSADE T F TC +C
Sbjct: 134 CGRCKSKKTSYYQLQTRSADEPMTTFVTCHQC 165
>gi|71409051|ref|XP_806892.1| transcription elongation factor S-II [Trypanosoma cruzi strain CL
Brener]
gi|70870766|gb|EAN85041.1| transcription elongation factor S-II, putative [Trypanosoma cruzi]
Length = 477
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 88 KQKDKTEIADGPIVER-KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++++K ++A+ + KC C + SY Q RSADE T F TC +C
Sbjct: 421 EEQEKLKLANVSVTSLFKCPNCGKNRCSYYEQQTRSADEPTTKFVTCLEC 470
>gi|448360157|ref|ZP_21548799.1| transcription termination factor Tfs [Natrialba chahannaoensis JCM
10990]
gi|445640107|gb|ELY93197.1| transcription termination factor Tfs [Natrialba chahannaoensis JCM
10990]
Length = 102
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C +D + Q+RSADE +T FF C++C
Sbjct: 56 PETDAHCPECGHDRAYWYMQQIRSADESETRFFICSEC 93
>gi|37718881|gb|AAR01752.1| putative transcription elongation factor, 5'-partial [Oryza sativa
Japonica Group]
Length = 315
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 276 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 308
>gi|448355098|ref|ZP_21543851.1| transcription termination factor Tfs [Natrialba hulunbeirensis JCM
10989]
gi|445635863|gb|ELY89028.1| transcription termination factor Tfs [Natrialba hulunbeirensis JCM
10989]
Length = 102
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C +D + Q+RSADE +T FF C++C
Sbjct: 56 PETDAHCPECGHDRAYWYMQQIRSADESETRFFICSEC 93
>gi|115456173|ref|NP_001051687.1| Os03g0815900 [Oryza sativa Japonica Group]
gi|28876018|gb|AAO60027.1| putative transcription elongation factor [Oryza sativa Japonica
Group]
gi|108711747|gb|ABF99542.1| transcription elongation factor S-II family protein, expressed
[Oryza sativa Japonica Group]
gi|113550158|dbj|BAF13601.1| Os03g0815900 [Oryza sativa Japonica Group]
gi|125546195|gb|EAY92334.1| hypothetical protein OsI_14059 [Oryza sativa Indica Group]
gi|125588382|gb|EAZ29046.1| hypothetical protein OsJ_13099 [Oryza sativa Japonica Group]
Length = 367
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 328 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 360
>gi|448930116|gb|AGE53682.1| transcription elongation factor S-II [Acanthocystis turfacea
Chlorella virus GM0701.1]
Length = 186
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ DG + +C++C + SY LQ RSADEG T + C +C
Sbjct: 137 DPKDMPDGML---QCRQCGSKKTSYYQLQTRSADEGITTYARCHEC 179
>gi|118576604|ref|YP_876347.1| DNA-directed RNA polymerase, subunit M/Transcription elongation
factor TFIIS [Cenarchaeum symbiosum A]
gi|118195125|gb|ABK78043.1| DNA-directed RNA polymerase, subunit M/Transcription elongation
factor TFIIS [Cenarchaeum symbiosum A]
Length = 103
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 95 IADGPIVER-------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ DGP+ E+ +C++C + + LQ RSADE T F+ C KC
Sbjct: 47 VLDGPVDEKLLSTIKIECEKCGHGEAVWWMLQTRSADEPTTQFYRCIKC 95
>gi|314055114|ref|YP_004063452.1| putative transcription elongation factor TFIIS [Ostreococcus tauri
virus 2]
gi|313575005|emb|CBI70018.1| putative transcription elongation factor TFIIS [Ostreococcus tauri
virus 2]
Length = 171
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C RC + SY LQ RSADE T F TC +C
Sbjct: 134 CGRCKSKKTSYYQLQTRSADEPMTTFVTCHQC 165
>gi|212532943|ref|XP_002146628.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Talaromyces marneffei ATCC 18224]
gi|210071992|gb|EEA26081.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Talaromyces marneffei ATCC 18224]
Length = 121
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+ + C C M + T QLRSADEG T+F+ C
Sbjct: 78 VTQHTCAECGRKEMFFTTAQLRSADEGTTVFYRC 111
>gi|226498648|ref|NP_001142260.1| uncharacterized protein LOC100274429 [Zea mays]
gi|194688540|gb|ACF78354.1| unknown [Zea mays]
gi|194707892|gb|ACF88030.1| unknown [Zea mays]
Length = 367
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 328 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 360
>gi|71421900|ref|XP_811947.1| RNA polymerase III C11 subunit [Trypanosoma cruzi strain CL Brener]
gi|70876670|gb|EAN90096.1| RNA polymerase III C11 subunit, putative [Trypanosoma cruzi]
Length = 167
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 21/129 (16%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKT-SYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC CGT+L L + + C + +Y LL + LK FN +
Sbjct: 48 FCPFCGTLL-LIEPHHPTNRFACSSCTYVAPIPSTHLLTVNHSLLK-----FN------K 95
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKR----CNNDTMSYATLQLRSADEGQ 127
++ + + N ++ + + E+ G ++ +C+ C+ + Y +Q+RSADE
Sbjct: 96 TVEDDANVKANGIKTKNE----EVDGGQLITVRCQNDEKFCDGNRAHYVQIQMRSADEPA 151
Query: 128 TIFFTCTKC 136
T FF C KC
Sbjct: 152 TTFFKCLKC 160
>gi|414873584|tpg|DAA52141.1| TPA: hypothetical protein ZEAMMB73_289702 [Zea mays]
Length = 318
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 279 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 311
>gi|388548782|gb|AFK65984.1| hypothetical protein OLVG_00230 [Ostreococcus lucimarinus virus
OlV6]
Length = 171
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C RC + SY LQ RSADE T F TC +C
Sbjct: 134 CGRCKSKKTSYYQLQTRSADEPMTTFVTCHQC 165
>gi|242066406|ref|XP_002454492.1| hypothetical protein SORBIDRAFT_04g032090 [Sorghum bicolor]
gi|241934323|gb|EES07468.1| hypothetical protein SORBIDRAFT_04g032090 [Sorghum bicolor]
Length = 166
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
+K E F+T ++ K KT + C+RCN+ + +Q+RSADE T +
Sbjct: 102 VKKEVEPIFSTADEMKSAPKTAVT--------CQRCNHGEAYFKQMQIRSADEPMTTIYR 153
Query: 133 CTK 135
C K
Sbjct: 154 CCK 156
>gi|340059261|emb|CCC53644.1| putative transcription factor S-II-like protein [Trypanosoma vivax
Y486]
Length = 154
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 10/139 (7%)
Query: 6 YFNVESEFCSKCGTILPLFD-FKGDVKCYVCKTSYGTQEQ----QPLLLGPDILFLKRFK 60
+F + S+ C+ CG+ +P F D + SY + QP+ P+
Sbjct: 10 FFPMGSQCCAVCGSWIPFQQQFPNDTPTEMRPGSYLCCQSCFSLQPVRALPNYREPSTVT 69
Query: 61 GHFNLFLAVFEEIKA-EYTIHFNTVEKEKQKDKTEIADGPIVERK-CKRCN-NDTMSYAT 117
LF EEI A + + K++ T D + E C+ C +
Sbjct: 70 SAALLFTK--EEINAAQKEVQQRMAAAAKEEVGTTHVDNRVEEEAFCESCGVHRKCKVFA 127
Query: 118 LQLRSADEGQTIFFTCTKC 136
Q+RSADEGQTIF+ CT C
Sbjct: 128 RQIRSADEGQTIFYQCTAC 146
>gi|448936006|gb|AGE59555.1| transcription elongation factor S-II [Acanthocystis turfacea
Chlorella virus OR0704.3]
Length = 180
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D + DG + +C++C + SY LQ RSADE T+F C C
Sbjct: 132 DPDSMPDGML---QCRKCGSKKTSYYELQTRSADEPMTVFARCHSC 174
>gi|320164226|gb|EFW41125.1| transcription elongation factor A [Capsaspora owczarzaki ATCC
30864]
Length = 433
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C +C SY LQ RS+DE T F TC C
Sbjct: 267 RCGKCGKRDASYFQLQTRSSDEPMTTFVTCNVC 299
>gi|398024776|ref|XP_003865549.1| transcription factor S-II-like protein [Leishmania donovani]
gi|322503786|emb|CBZ38872.1| transcription factor S-II-like protein [Leishmania donovani]
Length = 254
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 88 KQKDKTEIADGPIVERKCKRC--NNDTMSYATLQLRSADEGQTIFFTCTKC 136
K TE+ + I E C+ C + ++A Q RSADEGQTIFF CTKC
Sbjct: 197 KSAGITEVDNRIIEEAFCETCGVHRPCKTFAR-QTRSADEGQTIFFQCTKC 246
>gi|326634546|pdb|3QT1|I Chain I, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
Length = 133
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 27/126 (21%)
Query: 13 FCSKCGTIL-PLFDFKGDVKCYVCKT-SYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC C +L P D + + + C+T SY + PL+ +++ + V
Sbjct: 26 FCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELI------TNIGETAGVV 79
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
++I ++ T+ P +R+C +C++ + LQ+RSADE T F
Sbjct: 80 QDIGSDPTL-------------------PRSDRECPKCHSRENVFFQLQIRSADEPMTTF 120
Query: 131 FTCTKC 136
+ C C
Sbjct: 121 YKCVNC 126
>gi|146105322|ref|XP_001470028.1| transcription factor S-II-like protein [Leishmania infantum JPCM5]
gi|134074398|emb|CAM73150.1| transcription factor S-II-like protein [Leishmania infantum JPCM5]
Length = 254
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 88 KQKDKTEIADGPIVERKCKRC--NNDTMSYATLQLRSADEGQTIFFTCTKC 136
K TE+ + I E C+ C + ++A Q RSADEGQTIFF CTKC
Sbjct: 197 KSAGITEVDNRIIEEAFCETCGVHRPCKTFA-RQTRSADEGQTIFFQCTKC 246
>gi|448932545|gb|AGE56104.1| transcription elongation factor S-II [Acanthocystis turfacea
Chlorella virus MO0605SPH]
gi|448933221|gb|AGE56778.1| transcription elongation factor S-II [Acanthocystis turfacea
Chlorella virus NE-JV-2]
gi|448936678|gb|AGE60225.1| transcription elongation factor S-II [Acanthocystis turfacea
Chlorella virus WI0606]
Length = 221
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D + DG + +C++C + SY LQ RSADE T+F C C
Sbjct: 173 DPDSMPDGML---QCRKCGSKKTSYYELQTRSADEPMTVFARCHSC 215
>gi|229581627|ref|YP_002840026.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.N.15.51]
gi|228012343|gb|ACP48104.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.N.15.51]
Length = 111
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKT---EIADGPIVERK-----CKRCNNDTMSYATLQLR 121
+EE E TI + K K+KT E + P +K C C ND + LQ R
Sbjct: 29 YEEEVPETTIVVTSKVKHSIKEKTLILEEEEMPSGAQKIKGVLCPSCKNDEAYFWILQTR 88
Query: 122 SADEGQTIFFTCTKC 136
ADE T F+ CTKC
Sbjct: 89 RADEPPTRFYKCTKC 103
>gi|154317407|ref|XP_001558023.1| hypothetical protein BC1G_03055 [Botryotinia fuckeliana B05.10]
gi|347839263|emb|CCD53835.1| similar to DNA-directed RNA polymerase I subunit [Botryotinia
fuckeliana]
Length = 121
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
+K++ + + + C C + + +QLRSADEG TIF+ CT
Sbjct: 69 EKSDYENQAMSKTPCPECGAKEVRFTAVQLRSADEGSTIFYNCT 112
>gi|357124260|ref|XP_003563821.1| PREDICTED: transcription elongation factor A protein 2-like
[Brachypodium distachyon]
Length = 364
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y LQ RSADE T F TC C
Sbjct: 325 KCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 357
>gi|440790887|gb|ELR12150.1| RNA polymerase III, putative [Acanthamoeba castellanii str. Neff]
Length = 107
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 102 ERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E KC C +D ++ LQ RSADE + F+ C KC
Sbjct: 66 EAKCPECGHDRANFFQLQTRSADEPSSTFYRCMKC 100
>gi|374634249|ref|ZP_09706613.1| DNA-directed RNA polymerase, subunit M/transcription elongation
factor TFIIS [Metallosphaera yellowstonensis MK1]
gi|373523014|gb|EHP67990.1| DNA-directed RNA polymerase, subunit M/transcription elongation
factor TFIIS [Metallosphaera yellowstonensis MK1]
Length = 100
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C C ND + + +Q R+ADE T F+ CTKC
Sbjct: 61 CPSCKNDEVYFWMVQTRAADEPPTRFYRCTKC 92
>gi|227828074|ref|YP_002829854.1| transcription termination factor Tfs [Sulfolobus islandicus
M.14.25]
gi|227830811|ref|YP_002832591.1| transcription factor S [Sulfolobus islandicus L.S.2.15]
gi|229579707|ref|YP_002838106.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.G.57.14]
gi|229585343|ref|YP_002843845.1| transcription termination factor Tfs [Sulfolobus islandicus
M.16.27]
gi|238620304|ref|YP_002915130.1| transcription termination factor Tfs [Sulfolobus islandicus M.16.4]
gi|385773782|ref|YP_005646349.1| transcription termination factor Tfs [Sulfolobus islandicus
HVE10/4]
gi|385776417|ref|YP_005648985.1| transcription termination factor Tfs [Sulfolobus islandicus REY15A]
gi|227457259|gb|ACP35946.1| transcription factor S [Sulfolobus islandicus L.S.2.15]
gi|227459870|gb|ACP38556.1| transcription termination factor Tfs [Sulfolobus islandicus
M.14.25]
gi|228010422|gb|ACP46184.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.G.57.14]
gi|228020393|gb|ACP55800.1| transcription termination factor Tfs [Sulfolobus islandicus
M.16.27]
gi|238381374|gb|ACR42462.1| transcription termination factor Tfs [Sulfolobus islandicus M.16.4]
gi|323475165|gb|ADX85771.1| transcription termination factor Tfs [Sulfolobus islandicus REY15A]
gi|323477897|gb|ADX83135.1| transcription termination factor Tfs [Sulfolobus islandicus
HVE10/4]
Length = 111
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKT---EIADGPIVERK-----CKRCNNDTMSYATLQLR 121
+EE E TI + K K+KT E + P +K C C ND + LQ R
Sbjct: 29 YEEEVPETTIVVTSKVKHSIKEKTLILEEEEMPSGAQKIKGVLCPSCKNDEAYFWILQTR 88
Query: 122 SADEGQTIFFTCTKC 136
ADE T F+ CTKC
Sbjct: 89 RADEPPTRFYKCTKC 103
>gi|157877353|ref|XP_001686998.1| transcription factor S-II-like protein [Leishmania major strain
Friedlin]
gi|68130073|emb|CAJ09381.1| transcription factor S-II-like protein [Leishmania major strain
Friedlin]
Length = 254
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 119 QLRSADEGQTIFFTCTKC 136
Q RSADEGQTIFF CTKC
Sbjct: 229 QTRSADEGQTIFFQCTKC 246
>gi|302696049|ref|XP_003037703.1| hypothetical protein SCHCODRAFT_48804 [Schizophyllum commune H4-8]
gi|300111400|gb|EFJ02801.1| hypothetical protein SCHCODRAFT_48804, partial [Schizophyllum
commune H4-8]
Length = 119
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 21/125 (16%)
Query: 13 FCSKCGTILPL-FDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC CGT+L + D + V+C C ++P DI R H + F +
Sbjct: 7 FCPFCGTLLNIPRDGERVVECEQCG------HEEPATSYEDIEITTR--SHPDAFPSALR 58
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
+ + T H E D + R + + +LRSADEG TIF+
Sbjct: 59 QKRKTQTKHH------------ETGDQGTLVRMYRDFGKREFAQPRSKLRSADEGSTIFY 106
Query: 132 TCTKC 136
TC C
Sbjct: 107 TCASC 111
>gi|56756933|gb|AAW26638.1| SJCHGC03725 protein [Schistosoma japonicum]
gi|226487380|emb|CAX74560.1| DNA-directed RNA polymerase III subunit C11 [Schistosoma japonicum]
Length = 115
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E + ++ KC +C++ + +Q RSADE TI ++C KC
Sbjct: 66 EYSSSAQIDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCMKC 108
>gi|159040983|ref|YP_001540235.1| transcription termination factor Tfs [Caldivirga maquilingensis
IC-167]
gi|157919818|gb|ABW01245.1| transcription termination factor Tfs [Caldivirga maquilingensis
IC-167]
Length = 115
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P V+ C RC N+ + Q R+ADE T F+ CT+C
Sbjct: 70 PKVKVTCPRCGNNEAYFWIQQTRAADEPPTRFYRCTRC 107
>gi|255559741|ref|XP_002520890.1| transcription elongation factor s-II, putative [Ricinus communis]
gi|223540021|gb|EEF41599.1| transcription elongation factor s-II, putative [Ricinus communis]
Length = 330
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC SY +Q RSADE T + TC C
Sbjct: 291 KCGRCGQRKTSYYQMQTRSADEPMTTYVTCVNC 323
>gi|339237313|ref|XP_003380211.1| DNA-directed RNA polymerase III subunit RPC10 [Trichinella
spiralis]
gi|316976988|gb|EFV60173.1| DNA-directed RNA polymerase III subunit RPC10 [Trichinella
spiralis]
Length = 120
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 88 KQKDKTEIADGP-------IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
K K+ + I GP I E KC +C+ + +Q+RSADE T F+ T
Sbjct: 45 KMKELSHILGGPKAWENAQITEEKCPKCDGGQAYFMQIQIRSADEPMTTFYLIT 98
>gi|433639454|ref|YP_007285214.1| transcription factor S, archaeal [Halovivax ruber XH-70]
gi|448377052|ref|ZP_21559976.1| transcription termination factor Tfs [Halovivax asiaticus JCM
14624]
gi|433291258|gb|AGB17081.1| transcription factor S, archaeal [Halovivax ruber XH-70]
gi|445656278|gb|ELZ09116.1| transcription termination factor Tfs [Halovivax asiaticus JCM
14624]
Length = 102
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C ND + Q RSADE +T FF C++C
Sbjct: 56 PETDALCPECGNDRAYWYLQQTRSADESETRFFICSEC 93
>gi|71424226|ref|XP_812723.1| transcription elongation factor-like protein [Trypanosoma cruzi
strain CL Brener]
gi|70877539|gb|EAN90872.1| transcription elongation factor-like protein, putative [Trypanosoma
cruzi]
Length = 477
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC C + SY Q RSADE T F TC +C
Sbjct: 438 KCPNCGKNRCSYYEQQTRSADEPTTKFVTCLEC 470
>gi|448934363|gb|AGE57916.1| transcription elongation factor S-II [Paramecium bursaria Chlorella
virus NW665.2]
Length = 181
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ADG + +C +C + SY +Q RSADE T+F C C
Sbjct: 133 DPADMADGML---QCGKCKSRKTSYYEMQTRSADEPMTVFAKCHTC 175
>gi|407866945|gb|EKG08471.1| transcription elongation factor-like protein, putative [Trypanosoma
cruzi]
Length = 477
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC C + SY Q RSADE T F TC +C
Sbjct: 438 KCPNCGKNRCSYYEQQTRSADEPTTKFVTCLEC 470
>gi|401420566|ref|XP_003874772.1| transcription factor S-II-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491008|emb|CBZ26272.1| transcription factor S-II-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 189
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 119 QLRSADEGQTIFFTCTKC 136
Q RSADEGQTIFF CTKC
Sbjct: 164 QTRSADEGQTIFFQCTKC 181
>gi|354610480|ref|ZP_09028436.1| transcription termination factor Tfs [Halobacterium sp. DL1]
gi|353195300|gb|EHB60802.1| transcription termination factor Tfs [Halobacterium sp. DL1]
Length = 104
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P E C C +DT Y Q SADE T FF C +C
Sbjct: 59 PTAEETCPECGHDTAWYTIKQTGSADEPPTRFFKCKEC 96
>gi|156039435|ref|XP_001586825.1| predicted protein [Sclerotinia sclerotiorum 1980]
gi|154697591|gb|EDN97329.1| predicted protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 95
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 101 VERKCKRCNND----TMSYATLQLRSADEGQTIFFTCTKC 136
V+R C+ N D M++ +Q+R ADEG TI +TC +C
Sbjct: 48 VKRSCENPNIDCPAEEMTFRNVQMRGADEGSTIIYTCPEC 87
>gi|15897234|ref|NP_341839.1| DNA-directed RNA polymerase subunit M [Sulfolobus solfataricus P2]
gi|384433745|ref|YP_005643103.1| transcription termination factor Tfs [Sulfolobus solfataricus 98/2]
gi|13813433|gb|AAK40629.1| DNA-directed RNA polymerase, subunit M (rpoM-1) [Sulfolobus
solfataricus P2]
gi|261601899|gb|ACX91502.1| transcription termination factor Tfs [Sulfolobus solfataricus 98/2]
Length = 114
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C C ND + LQ R ADE T F+ CTKC
Sbjct: 75 CPSCKNDEAYFWILQTRRADEPPTRFYKCTKC 106
>gi|407393614|gb|EKF26679.1| transcription elongation factor-like protein, putative [Trypanosoma
cruzi marinkellei]
Length = 477
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC C + SY Q RSADE T F TC +C
Sbjct: 438 KCPNCGKNRCSYYEQQTRSADEPTTKFVTCLEC 470
>gi|389582182|dbj|GAB64737.1| transcription factor IIS TFIIS [Plasmodium cynomolgi strain B]
Length = 645
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
I KC C ND + + +Q RSADEG TI + C
Sbjct: 592 ITYEKCTDCGNDFLHFINIQTRSADEGSTIIYFC 625
>gi|123478003|ref|XP_001322166.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121905007|gb|EAY09943.1| hypothetical protein TVAG_482170 [Trichomonas vaginalis G3]
Length = 109
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 37/130 (28%)
Query: 12 EFCSKCGTILPLFDFKGD---VKCYVCKTSYG--TQEQQPLLLGPDILFLKRFKGHFNLF 66
FC CG +L L D GD +KC C G + Q L P
Sbjct: 5 SFCPACGNLL-LVDTSGDRTQLKCRACNFVMGFVGRTVQSAPLNP--------------- 48
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
L V I + + F ++KT+ +C +C ++ + +Q+RSADE
Sbjct: 49 LDVKALITNDDAMSF--------QNKTQA--------RCDKCGHNEAFFTEIQIRSADEP 92
Query: 127 QTIFFTCTKC 136
T+FF C KC
Sbjct: 93 ATLFFKCCKC 102
>gi|284174479|ref|ZP_06388448.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
solfataricus 98/2]
Length = 111
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C C ND + LQ R ADE T F+ CTKC
Sbjct: 72 CPSCKNDEAYFWILQTRRADEPPTRFYKCTKC 103
>gi|429190974|ref|YP_007176652.1| transcription factor S, archaeal [Natronobacterium gregoryi SP2]
gi|448327460|ref|ZP_21516788.1| transcription termination factor Tfs [Natronobacterium gregoryi
SP2]
gi|429135192|gb|AFZ72203.1| transcription factor S, archaeal [Natronobacterium gregoryi SP2]
gi|445608558|gb|ELY62397.1| transcription termination factor Tfs [Natronobacterium gregoryi
SP2]
Length = 102
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 55 FLKRFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQK--DKTEIADGPIVERKCKRCNNDT 112
+K G + + E K + + T +E + + +E P + C C +D
Sbjct: 10 MMKADDGRWECGSCGYTEPKGDADQYVVTDSQEASEIIESSEETSLPETDAHCPECGHDR 69
Query: 113 MSYATLQLRSADEGQTIFFTCTKC 136
+ Q+R+ADE +T FF C++C
Sbjct: 70 AYWYMQQIRAADESETRFFICSEC 93
>gi|125540641|gb|EAY87036.1| hypothetical protein OsI_08435 [Oryza sativa Indica Group]
gi|222623425|gb|EEE57557.1| hypothetical protein OsJ_07898 [Oryza sativa Japonica Group]
Length = 106
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTK 135
D + + P C RC N Y +Q+RSADE + F+ C +
Sbjct: 52 DSDAMKNAPKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCR 96
>gi|115447857|ref|NP_001047708.1| Os02g0672700 [Oryza sativa Japonica Group]
gi|50251233|dbj|BAD27819.1| putative DNA-directed RNA polymerase III [Oryza sativa Japonica
Group]
gi|50251924|dbj|BAD27861.1| putative DNA-directed RNA polymerase II [Oryza sativa Japonica
Group]
gi|113537239|dbj|BAF09622.1| Os02g0672700 [Oryza sativa Japonica Group]
gi|215708708|dbj|BAG93977.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765354|dbj|BAG87051.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 110
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTK 135
D + + P C RC N Y +Q+RSADE + F+ C +
Sbjct: 56 DSDAMKNAPKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCR 100
>gi|403220912|dbj|BAM39045.1| transcription elongation factor [Theileria orientalis strain
Shintoku]
Length = 319
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC +CN+ +Y LQ RS+DE T F TC C
Sbjct: 281 KCGKCNSRQTTYYQLQTRSSDEPMTTFVTCLNC 313
>gi|171186130|ref|YP_001795049.1| transcription termination factor Tfs [Pyrobaculum neutrophilum
V24Sta]
gi|170935342|gb|ACB40603.1| transcription termination factor Tfs [Pyrobaculum neutrophilum
V24Sta]
Length = 110
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 95 IADGPI-----VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+AD P+ R C +C +D Q R+ADE T F+ CTKC
Sbjct: 56 VADNPVNLPKAKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRCTKC 102
>gi|448926167|gb|AGE49744.1| transcription elongation factor S-II [Paramecium bursaria Chlorella
virus Can18-4]
Length = 180
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ADG + +C +C + SY +Q RSADE T+F C C
Sbjct: 132 DPADMADGML---QCGKCKSRKTSYYEMQTRSADEPMTVFAKCHVC 174
>gi|50310967|ref|XP_455506.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644642|emb|CAG98214.1| KLLA0F09361p [Kluyveromyces lactis]
Length = 292
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 96 ADGPIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G VER +C +C +SY LQ RSADE T F TC C
Sbjct: 239 AQGATVERSVTDRFQCGKCKQRKVSYYQLQTRSADEPLTTFCTCENC 285
>gi|159474128|ref|XP_001695181.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276115|gb|EDP01889.1| predicted protein [Chlamydomonas reinhardtii]
Length = 348
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C RC +Y LQ RSADE T F TCT C
Sbjct: 309 QCGRCKQRKCTYYQLQTRSADEPMTTFVTCTNC 341
>gi|155121849|gb|ABT13717.1| hypothetical protein MT325_M163L [Paramecium bursaria chlorella
virus MT325]
Length = 180
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ADG + +C +C + SY +Q RSADE T+F C C
Sbjct: 132 DPADMADGML---QCGKCKSRKTSYYEMQTRSADEPMTVFAKCHVC 174
>gi|225556478|gb|EEH04766.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces capsulatus
G186AR]
gi|240273584|gb|EER37104.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
gi|325087485|gb|EGC40795.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 117
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 90 KDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KD+ + AD + + C+ D + LQ+RSADE T FF CT C
Sbjct: 64 KDEWKNADSQGTQCPAEGCDGDRAYFYQLQIRSADEPMTTFFKCTTC 110
>gi|167042511|gb|ABZ07236.1| putative transcription factor S-II (TFIIS) [uncultured marine
crenarchaeote HF4000_ANIW133C7]
Length = 59
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C++C+N + +LQ RSADE +T F+ C KC
Sbjct: 20 CEKCHNQEGVWWSLQTRSADEPETRFYRCIKC 51
>gi|448715566|ref|ZP_21702424.1| transcription termination factor Tfs [Halobiforma nitratireducens
JCM 10879]
gi|445787810|gb|EMA38547.1| transcription termination factor Tfs [Halobiforma nitratireducens
JCM 10879]
Length = 102
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C +D + Q+R+ADE +T FF C++C
Sbjct: 56 PETDANCPECGHDRAYWYMQQIRAADESETRFFICSEC 93
>gi|328855592|gb|EGG04718.1| hypothetical protein MELLADRAFT_37278 [Melampsora larici-populina
98AG31]
Length = 114
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
E C +C N+ Y LQ+RSADE T F+ CT
Sbjct: 71 TEAPCPKCENNRAFYMQLQIRSADEPMTTFYRCT 104
>gi|145551853|ref|XP_001461603.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429438|emb|CAK94230.1| unnamed protein product [Paramecium tetraurelia]
Length = 106
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 115 YATLQLRSADEGQTIFFTCTKC 136
++T QLRSADEG T+F+ C KC
Sbjct: 77 FSTAQLRSADEGSTVFYECVKC 98
>gi|432908156|ref|XP_004077781.1| PREDICTED: transcription elongation factor A protein 3-like
[Oryzias latipes]
Length = 520
Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C +CN +Y +Q RSADE T F C +C
Sbjct: 481 QCGKCNKKNCTYNQVQTRSADEPMTTFVLCNEC 513
>gi|242776973|ref|XP_002478939.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722558|gb|EED21976.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Talaromyces stipitatus ATCC 10500]
Length = 121
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+ + C C M + T QLRSADEG T+F+ C
Sbjct: 78 VTQYTCAECGRKEMFFTTAQLRSADEGTTVFYRC 111
>gi|380476055|emb|CCF44922.1| transcription elongation factor S-II [Colletotrichum higginsianum]
Length = 302
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 19/82 (23%)
Query: 66 FLAVFEEIKAEYTIHFNTVEKEKQKDKTEI-----ADGPIVER------KCKRCNNDTMS 114
+ EE+K+E E+ K++D ++ A P+ E+ KC +C +S
Sbjct: 222 VVMTHEELKSE--------EQRKKEDALQLENMKKAQVPMAEKSISDALKCGKCGQKKVS 273
Query: 115 YATLQLRSADEGQTIFFTCTKC 136
Y+ Q RSADE T F CT C
Sbjct: 274 YSQAQTRSADEPMTTFCECTVC 295
>gi|296241788|ref|YP_003649275.1| DNA-directed RNA polymerase subunit M [Thermosphaera aggregans DSM
11486]
gi|296094372|gb|ADG90323.1| DNA-directed RNA polymerase, subunit M [Thermosphaera aggregans DSM
11486]
Length = 114
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 70 FEEIKAEYTIHFNTVEKEKQKDKTEIADGPIV-ERKCKRCNNDTMSYATLQLRSADEGQT 128
E+ + I +T EK + + P+ E C +C N Y +Q R+ADE T
Sbjct: 39 LEKYRVSSRIEHSTREKTIVVGDVDTSKLPVSKEVTCPKCGNHEAYYWMIQTRAADEPPT 98
Query: 129 IFFTCTKC 136
F+ C KC
Sbjct: 99 RFYKCVKC 106
>gi|126179341|ref|YP_001047306.1| transcription termination factor Tfs [Methanoculleus marisnigri
JR1]
gi|125862135|gb|ABN57324.1| DNA-directed RNA polymerase, subunit M [Methanoculleus marisnigri
JR1]
Length = 104
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+IA P KC C+ T + QLR+ADE + FF CT C
Sbjct: 54 KIATLPTASIKCPECDCTTAFWWLRQLRAADESEVRFFRCTAC 96
>gi|374634175|ref|ZP_09706540.1| transcription factor S, archaeal [Metallosphaera yellowstonensis
MK1]
gi|373523963|gb|EHP68883.1| transcription factor S, archaeal [Metallosphaera yellowstonensis
MK1]
Length = 100
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C C ND + + +Q R+ADE T F+ CT+C
Sbjct: 61 CPSCKNDEVYFWMVQTRAADEPPTRFYRCTRC 92
>gi|260665894|ref|YP_003212848.1| hypothetical protein H665_p024 [Ostreococcus tauri virus 1]
gi|260160912|emb|CAY39612.1| hypothetical protein OTV1_024 [Ostreococcus tauri virus 1]
Length = 167
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C RC ++ SY LQ RSADE T F +C C
Sbjct: 130 CGRCKSNKTSYYQLQTRSADEPMTTFVSCHNC 161
>gi|260941386|ref|XP_002614859.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851282|gb|EEQ40746.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 111
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 108 CNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C ND + LQ+RSADE T F+ CTKC
Sbjct: 76 CGNDKAYFFQLQIRSADEPMTTFYKCTKC 104
>gi|163954997|ref|YP_001648101.1| hypothetical protein OsV5_024r [Ostreococcus virus OsV5]
gi|163638446|gb|ABY27805.1| hypothetical protein OsV5_024r [Ostreococcus virus OsV5]
Length = 167
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C RC ++ SY LQ RSADE T F +C C
Sbjct: 130 CGRCKSNKTSYYQLQTRSADEPMTTFVSCHNC 161
>gi|310789962|gb|EFQ25495.1| transcription elongation factor S-II [Glomerella graminicola
M1.001]
Length = 302
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 89 QKDKTEIADGPIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
Q++ + A P+ E+ KC +C +SY+ Q RSADE T F CT C
Sbjct: 242 QQENMKKAQVPMAEKSISDALKCGKCGQKKVSYSQAQTRSADEPMTTFCECTVC 295
>gi|448928188|gb|AGE51759.1| transcription elongation factor S-II [Paramecium bursaria Chlorella
virus CVM-1]
Length = 181
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ADG + +C +C + SY +Q RSADE T+F C C
Sbjct: 133 DPADMADGML---QCGKCKSRKTSYYEMQTRSADEPMTVFAKCHVC 175
>gi|429965129|gb|ELA47126.1| hypothetical protein VCUG_01399 [Vavraia culicis 'floridensis']
Length = 105
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 102 ERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E+ C++C +T ++ +Q RSADE TIF+ C +C
Sbjct: 65 EKICEKCGYNTATFYEMQTRSADEPMTIFYQCLQC 99
>gi|402218920|gb|EJT98995.1| DNA-directed RNA polymerase polypeptide [Dacryopinax sp. DJM-731
SS1]
Length = 121
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 23/123 (18%)
Query: 13 FCSKCGTIL--PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
FC +CGT+L P+ D V+C C Q ++P ++ ++
Sbjct: 7 FCPECGTLLSLPVEDNLKYVECEQC------QYREPA---------SSYENIEVTTVSTL 51
Query: 71 EEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIF 130
E I + + K + + I + +C +C + +Y Q+RSADEG T+
Sbjct: 52 ESIPSPLRL------KRTTRTRAHIGGDLDTKAQCPKCGHRESTYKEKQMRSADEGATLI 105
Query: 131 FTC 133
++C
Sbjct: 106 YSC 108
>gi|307104138|gb|EFN52393.1| hypothetical protein CHLNCDRAFT_138851 [Chlorella variabilis]
Length = 92
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 92 KTEIADGPIVER-KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ E P E +C C ++ Y +Q RSADE T +F CT+C
Sbjct: 40 EAEWRSAPRTEHTRCSECGHNVAFYQQVQNRSADEPATTYFRCTRC 85
>gi|392575324|gb|EIW68458.1| hypothetical protein TREMEDRAFT_24045, partial [Tremella
mesenterica DSM 1558]
Length = 108
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 79 IHFNTVEKEKQKD-----KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
I T K KQ D K A+ ++ C +C+ Y LQ+RSADE T F+ C
Sbjct: 40 ISMRTHLKRKQVDDVLGGKEAWANVDKIDATCPKCDARKAYYRQLQIRSADEPMTTFYKC 99
Query: 134 TKC 136
C
Sbjct: 100 VDC 102
>gi|323510295|dbj|BAJ78041.1| cgd3_2550 [Cryptosporidium parvum]
Length = 246
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D P ++ C C+++ + Q RSADEG T+ + C KC
Sbjct: 193 DAMHKKKAPKIQEICPECSHNEAFFTQFQARSADEGTTVMYECCKC 238
>gi|88602097|ref|YP_502275.1| transcription factor S [Methanospirillum hungatei JF-1]
gi|88187559|gb|ABD40556.1| DNA-directed RNA polymerase, subunit M [Methanospirillum hungatei
JF-1]
Length = 107
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 30/122 (24%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FC KCG +L K ++C TS G +++ GH + + ++
Sbjct: 4 FCEKCGKLL-----KNQAGSFIC-TSCGWEKE----------------GHGETKMKITDK 41
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
K + + + E + P + KC C N + QLRSADE + FF
Sbjct: 42 RKEKEIVIVDDTE--------SVRTLPTIAVKCPNCGNGEAFWWLRQLRSADESEVRFFR 93
Query: 133 CT 134
CT
Sbjct: 94 CT 95
>gi|448301924|ref|ZP_21491913.1| transcription termination factor Tfs [Natronorubrum tibetense GA33]
gi|445583132|gb|ELY37466.1| transcription termination factor Tfs [Natronorubrum tibetense GA33]
Length = 102
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C +D + Q+RSADE +T FF C++C
Sbjct: 56 PETDALCPECGHDRAYWYMQQIRSADESETRFFICSEC 93
>gi|167045007|gb|ABZ09671.1| putative transcription factor S-II (TFIIS) [uncultured marine
crenarchaeote HF4000_APKG8G15]
Length = 106
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C++C+N +LQ RSADE +T F+ CTKC
Sbjct: 67 CEKCHNQEGVCWSLQTRSADEPETRFYRCTKC 98
>gi|448926845|gb|AGE50420.1| transcription elongation factor S-II [Paramecium bursaria Chlorella
virus CVA-1]
gi|448928528|gb|AGE52098.1| transcription elongation factor S-II [Paramecium bursaria Chlorella
virus CVR-1]
Length = 180
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
E A + F+ D ++ADG + C +C + SY +Q RSADE T+F
Sbjct: 116 EAAARRALRFSDAS---SMDPADMADGML---SCGKCKSRKTSYYEMQTRSADEPMTVFA 169
Query: 132 TCTKC 136
C C
Sbjct: 170 KCHTC 174
>gi|307212490|gb|EFN88221.1| DNA-directed RNA polymerase III subunit RPC10 [Harpegnathos
saltator]
Length = 109
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+ +C RC++ Y LQ RSADE TIF+ C
Sbjct: 66 TDERCPRCSHPRAYYTQLQTRSADEPMTIFYKC 98
>gi|440479245|gb|ELQ60026.1| transcription elongation factor S-II [Magnaporthe oryzae P131]
Length = 275
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 85 EKEKQKDKTEIADGPIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E+E K+ + A P+ ER +C +C +SY Q RSADE T F CT C
Sbjct: 209 EEELAKENMKKAQVPMAERSISDALECSKCKQKKVSYTQAQTRSADEPMTTFCECTVC 266
>gi|336267896|ref|XP_003348713.1| hypothetical protein SMAC_01735 [Sordaria macrospora k-hell]
gi|380093969|emb|CCC08186.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 122
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 13 FCSKCGTILPLFDFKGDVKCYV-CKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC+ CG +LP+ KG K + C+ +P + K F L +
Sbjct: 9 FCTDCGNLLPVS--KGSEKNILHCECCGAENRDRP----SRTVVTKSKPSDFPSLLR--Q 60
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
++ T+ + + E+ TE C +C + Y+ +Q RSADEG TI +
Sbjct: 61 KLDVTQTVVRHELNTERIDSNTE----------CPKCGKRGIRYSEVQQRSADEGSTILY 110
Query: 132 TC 133
C
Sbjct: 111 NC 112
>gi|388854758|emb|CCF51651.1| related to transcription elongation factor TFIIS [Ustilago hordei]
Length = 317
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C RC Y +Q RSADE T F TCT C
Sbjct: 278 QCGRCKQRKTRYYQMQTRSADEPMTTFVTCTNC 310
>gi|410722289|ref|ZP_11361595.1| transcription factor S, archaeal [Methanobacterium sp. Maddingley
MBC34]
gi|410597324|gb|EKQ51951.1| transcription factor S, archaeal [Methanobacterium sp. Maddingley
MBC34]
Length = 104
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 48/127 (37%), Gaps = 34/127 (26%)
Query: 12 EFCSKCGTIL-PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
EFC KCGT+L P KGD C+ C Y + +
Sbjct: 2 EFCPKCGTVLFP----KGD--CFECSCGYQKK--------------------------IT 29
Query: 71 EEIKAEYTIHFNTVEKEKQ-KDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+E +EY I KE ++ P + C +C N + Q R ADE +T
Sbjct: 30 KESLSEYEISEKVAPKENVIVTGDDVKTLPTTKALCPKCGNRLAFWWLQQTRRADESETR 89
Query: 130 FFTCTKC 136
F CT+C
Sbjct: 90 FLRCTEC 96
>gi|389637312|ref|XP_003716294.1| transcription elongation factor S-II [Magnaporthe oryzae 70-15]
gi|351642113|gb|EHA49975.1| transcription elongation factor S-II [Magnaporthe oryzae 70-15]
Length = 304
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 85 EKEKQKDKTEIADGPIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E+E K+ + A P+ ER +C +C +SY Q RSADE T F CT C
Sbjct: 240 EEELAKENMKKAQVPMAERSISDALECSKCKQKKVSYTQAQTRSADEPMTTFCECTVC 297
>gi|388583993|gb|EIM24294.1| transcription elongation factor [Wallemia sebi CBS 633.66]
Length = 282
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y +Q RSADE T F TCT C
Sbjct: 243 KCGRCKQRKCTYYQMQTRSADEPMTTFVTCTVC 275
>gi|383620681|ref|ZP_09947087.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
gi|448698276|ref|ZP_21698915.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
gi|445780895|gb|EMA31765.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
Length = 102
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C C +D + Q+R+ADE +T FF C++C
Sbjct: 56 PETDAHCPECGHDRAYWYMKQIRAADESETRFFICSEC 93
>gi|161610990|gb|ABX75173.1| RNA polymerase III 12.5 kDa polypeptide [Caenorhabditis brenneri]
gi|341900172|gb|EGT56107.1| hypothetical protein CAEBREN_07334 [Caenorhabditis brenneri]
Length = 108
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 88 KQKDKTEIADGP-------IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTK 135
K KD ++ GP I + +C C+++ + LQ RSADE TIF+ C
Sbjct: 45 KLKDIDDVLGGPGAWENAQITDERCPVCSHERAYFMQLQTRSADEPMTIFYRCAN 99
>gi|443894971|dbj|GAC72317.1| transcription elongation factor TFIIS [Pseudozyma antarctica T-34]
Length = 321
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C RC Y +Q RSADE T F TCT C
Sbjct: 282 QCGRCKQRKTRYYQMQTRSADEPMTTFVTCTNC 314
>gi|440467322|gb|ELQ36551.1| transcription elongation factor S-II [Magnaporthe oryzae Y34]
Length = 306
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 85 EKEKQKDKTEIADGPIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E+E K+ + A P+ ER +C +C +SY Q RSADE T F CT C
Sbjct: 240 EEELAKENMKKAQVPMAERSISDALECSKCKQKKVSYTQAQTRSADEPMTTFCECTVC 297
>gi|66359276|ref|XP_626816.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46228364|gb|EAK89263.1| hypothetical protein with carboxy terminus motif shared with
DNA-directed RNA polymerase subunit and TFIIS
[Cryptosporidium parvum Iowa II]
Length = 203
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D P ++ C C+++ + Q RSADEG T+ + C KC
Sbjct: 150 DAMHKKKAPKIQEICPECSHNEAFFTQFQARSADEGTTVMYECCKC 195
>gi|303388621|ref|XP_003072544.1| DNA-directed RNA polymerase subunit M [Encephalitozoon intestinalis
ATCC 50506]
gi|303301685|gb|ADM11184.1| DNA-directed RNA polymerase subunit M [Encephalitozoon intestinalis
ATCC 50506]
Length = 104
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 103 RKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+KC+ C ++ +S+ LQ RSADE TIF+ C +C
Sbjct: 66 KKCE-CGSEEVSFVELQTRSADEPMTIFYKCIRC 98
>gi|71023611|ref|XP_762035.1| hypothetical protein UM05888.1 [Ustilago maydis 521]
gi|46101600|gb|EAK86833.1| hypothetical protein UM05888.1 [Ustilago maydis 521]
Length = 315
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C RC Y +Q RSADE T F TCT C
Sbjct: 276 QCGRCKQRKTRYYQMQTRSADEPMTTFVTCTNC 308
>gi|155371687|ref|YP_001427221.1| hypothetical protein ATCV1_Z740R [Acanthocystis turfacea Chlorella
virus 1]
gi|155125007|gb|ABT16874.1| hypothetical protein ATCV1_Z740R [Acanthocystis turfacea Chlorella
virus 1]
Length = 221
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C++C + SY LQ RSADE T+F C C
Sbjct: 183 QCRKCGSKKTSYYELQTRSADEPMTVFARCHSC 215
>gi|401825647|ref|XP_003886918.1| DNA-directed RNA polymerase subunit M [Encephalitozoon hellem ATCC
50504]
gi|392998075|gb|AFM97937.1| DNA-directed RNA polymerase subunit M [Encephalitozoon hellem ATCC
50504]
Length = 104
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 103 RKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+KC+ C ++ +S+ LQ RSADE TIF+ C +C
Sbjct: 66 KKCE-CGSEEVSFVELQTRSADEPMTIFYKCIRC 98
>gi|113195665|ref|NP_001037832.1| polymerase (RNA) III (DNA directed) polypeptide K [Ciona
intestinalis]
gi|198420477|ref|XP_002119150.1| PREDICTED: hypothetical protein [Ciona intestinalis]
gi|92081584|dbj|BAE93339.1| RNA polymerase [Ciona intestinalis]
Length = 108
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
E KC +C +D + +Q RSADE TIF+ C
Sbjct: 65 TEEKCPKCEHDRAYFMQIQTRSADEPMTIFYKC 97
>gi|327400303|ref|YP_004341142.1| transcription termination factor Tfs [Archaeoglobus veneficus SNP6]
gi|327315811|gb|AEA46427.1| transcription termination factor Tfs [Archaeoglobus veneficus SNP6]
Length = 104
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P C C N + QLR+ADE + FF CTKC
Sbjct: 59 PTTRVVCPECGNREAYWWLRQLRAADESEVRFFRCTKC 96
>gi|387593244|gb|EIJ88268.1| hypothetical protein NEQG_01712 [Nematocida parisii ERTm3]
gi|387596044|gb|EIJ93666.1| hypothetical protein NEPG_01238 [Nematocida parisii ERTm1]
Length = 102
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 74 KAEYTIHFNTVEKEKQKDKTEIADGPIVERK--CKRCNNDTMSYATLQLRSADEGQTIFF 131
K + T +EK K K+ + ER C C+ +Y +Q RSADE TIF
Sbjct: 40 KTKLTPKVELIEKSKPKE--------LPERNALCPECSFTKANYYQMQTRSADEPMTIFN 91
Query: 132 TCTKC 136
TCT+C
Sbjct: 92 TCTRC 96
>gi|154346242|ref|XP_001569058.1| transcription factor S-II-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066400|emb|CAM44191.1| transcription factor S-II-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 195
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 93 TEIADGPIVERKCKRCN-NDTMSYATLQLRSADEGQTIFFTCTKC 136
TE+ + I E C+ C + + Q RSADEGQTIFF CT+C
Sbjct: 143 TEVDNRIIEESFCETCGIHRSCKTFARQTRSADEGQTIFFQCTEC 187
>gi|350296969|gb|EGZ77946.1| transcription elongation factor [Neurospora tetrasperma FGSC 2509]
Length = 298
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 85 EKEKQKDKTEIADGPIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++E +K+ + A P+ E+ KC +C +SY+ Q RSADE T F CT C
Sbjct: 234 DEELEKENMKKAQVPMAEKSISDALKCGKCGQRKVSYSQAQTRSADEPMTTFCECTVC 291
>gi|219121449|ref|XP_002185948.1| RNA polymerase C subunit 11 kDa [Phaeodactylum tricornutum CCAP
1055/1]
gi|209582797|gb|ACI65418.1| RNA polymerase C subunit 11 kDa [Phaeodactylum tricornutum CCAP
1055/1]
Length = 111
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C CN++ + +Q+RSADE +IF+ C +C
Sbjct: 73 CPACNHNEAYFMQMQIRSADEPMSIFYKCVQC 104
>gi|145591990|ref|YP_001153992.1| transcription termination factor Tfs [Pyrobaculum arsenaticum DSM
13514]
gi|379003304|ref|YP_005258976.1| transcription factor S, archaeal [Pyrobaculum oguniense TE7]
gi|145283758|gb|ABP51340.1| DNA-directed RNA polymerase, subunit M [Pyrobaculum arsenaticum DSM
13514]
gi|375158757|gb|AFA38369.1| transcription factor S, archaeal [Pyrobaculum oguniense TE7]
Length = 110
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 103 RKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
R C +C +D + Q R+ADE T F+ CTKC
Sbjct: 69 RGCPKCGHDEAYFWVQQTRAADEPPTRFYRCTKC 102
>gi|378706130|gb|AFC34931.1| hypothetical protein OtV6_023c [Ostreococcus tauri virus RT-2011]
Length = 171
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C RC + +Y LQ RSADE T F TC C
Sbjct: 134 CGRCKSKKTTYYQLQTRSADEPMTTFVTCLNC 165
>gi|343427400|emb|CBQ70927.1| related to transcription elongation factor TFIIS [Sporisorium
reilianum SRZ2]
Length = 319
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C RC Y +Q RSADE T F TCT C
Sbjct: 280 QCGRCKQRKTRYYQMQTRSADEPMTTFVTCTNC 312
>gi|11498834|ref|NP_070063.1| transcription-associated protein TFIIS [Archaeoglobus fulgidus DSM
4304]
gi|3287902|sp|O29033.1|RPOM_ARCFU RecName: Full=DNA-directed RNA polymerase subunit M
gi|2649347|gb|AAB90009.1| transcription-associated protein TFIIS [Archaeoglobus fulgidus DSM
4304]
Length = 103
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 83 TVEKEKQKDKTEIADG------PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++ E+ K+ + +G P + C C ++ + QLR+ADE + FF CTKC
Sbjct: 36 VIKVERNKEDVPVIEGENLKTLPTTKAICPACGHNEAFWWLRQLRAADESEVRFFRCTKC 95
>gi|85119699|ref|XP_965694.1| hypothetical protein NCU02563 [Neurospora crassa OR74A]
gi|28927506|gb|EAA36458.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|38567143|emb|CAE76438.1| related to transcription elongation factor TFIIS [Neurospora
crassa]
gi|336464865|gb|EGO53105.1| hypothetical protein NEUTE1DRAFT_73389 [Neurospora tetrasperma FGSC
2508]
Length = 298
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 85 EKEKQKDKTEIADGPIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++E +K+ + A P+ E+ KC +C +SY+ Q RSADE T F CT C
Sbjct: 234 DEELEKENMKKAQVPMAEKSISDALKCGKCGQRKVSYSQAQTRSADEPMTTFCECTVC 291
>gi|268553695|ref|XP_002634834.1| Hypothetical protein CBG13943 [Caenorhabditis briggsae]
Length = 108
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 88 KQKDKTEIADGP-------IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTK 135
K KD ++ GP + + +C C+++ + LQ RSADE TIF+ C
Sbjct: 45 KLKDIDDVLGGPGAWENAQVTDERCPLCSHERAYFMQLQTRSADEPMTIFYRCAN 99
>gi|169778755|ref|XP_001823842.1| DNA-directed RNA polymerase III subunit RPC10 [Aspergillus oryzae
RIB40]
gi|238499325|ref|XP_002380897.1| RNA polymerase III subunit C11, putative [Aspergillus flavus
NRRL3357]
gi|83772581|dbj|BAE62709.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692650|gb|EED48996.1| RNA polymerase III subunit C11, putative [Aspergillus flavus
NRRL3357]
gi|391870847|gb|EIT80017.1| RNA polymerase III subunit C11 [Aspergillus oryzae 3.042]
Length = 117
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 92 KTEIADGPIVERKC--KRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E A+ + +C + CN D + LQ+RSADE T F CT C
Sbjct: 64 KEEFANADSMATQCPAENCNGDRAYFFQLQIRSADEPMTTFLKCTSC 110
>gi|403215573|emb|CCK70072.1| hypothetical protein KNAG_0D03260 [Kazachstania naganishii CBS
8797]
Length = 309
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 96 ADGPIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER +C +C +SY LQ RSADE T F TC C
Sbjct: 256 AQGATIERSVTDRFQCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 302
>gi|330936351|ref|XP_003305354.1| hypothetical protein PTT_18169 [Pyrenophora teres f. teres 0-1]
gi|311317653|gb|EFQ86540.1| hypothetical protein PTT_18169 [Pyrenophora teres f. teres 0-1]
Length = 108
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 90 KDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KD D V+ ++C N + LQ+RSADE T F+ CT+C
Sbjct: 56 KDAWANVDKTEVQCPNEKCRNHEAYWYQLQIRSADEPMTAFYKCTQC 102
>gi|297745506|emb|CBI40586.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
K ++ +GP + C CN + LQ RSADE + F+ C
Sbjct: 122 KDDMKNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWC 163
>gi|14324969|dbj|BAB59895.1| transcription factor [TFIIS/RPB9] [Thermoplasma volcanium GSS1]
Length = 106
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 74 KAEYTIHFNTVEKEKQKDKTEIADGPI-VERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
K + I + +KE + E++ P+ + C RC++ Y Q RSADE +T F+T
Sbjct: 36 KEDLKIVNKSNDKETIMIREEVSAEPLDSDAICPRCHHKGARYVLKQTRSADEPETKFYT 95
Query: 133 CTKC 136
C +C
Sbjct: 96 CEEC 99
>gi|336262956|ref|XP_003346260.1| DST1 protein [Sordaria macrospora k-hell]
gi|380093589|emb|CCC08553.1| putative DST1 protein [Sordaria macrospora k-hell]
Length = 298
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 85 EKEKQKDKTEIADGPIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++E +K+ + A P+ E+ KC +C +SY+ Q RSADE T F CT C
Sbjct: 234 DEELEKENMKKAQVPMAEKSISDALKCGKCGQRKVSYSQAQTRSADEPMTTFCECTVC 291
>gi|440295289|gb|ELP88202.1| transcription elongation factor S-II, putative [Entamoeba invadens
IP1]
Length = 169
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 85 EKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++E +K +I+ P E C +C++ + +QLRSADE T TC C
Sbjct: 110 DEEDKKKPLDISKIPDHEFSCPKCSSRKIQETQVQLRSADEPMTRILTCANC 161
>gi|147904545|ref|NP_001090166.1| transcription elongation factor A (SII), 3 [Xenopus laevis]
gi|10801727|dbj|BAB16755.1| transcription elongation factor XSII-K1 [Xenopus laevis]
Length = 645
Score = 36.2 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C++C SY +Q RSADE T F C +C
Sbjct: 606 QCEKCKKKNCSYNQVQTRSADEPMTTFVLCNEC 638
>gi|213623950|gb|AAI70441.1| Transcription elongation factor XSII-K1 [Xenopus laevis]
Length = 645
Score = 36.2 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C++C SY +Q RSADE T F C +C
Sbjct: 606 QCEKCKKKNCSYNQVQTRSADEPMTTFVLCNEC 638
>gi|213625366|gb|AAI70443.1| Transcription elongation factor XSII-K1 [Xenopus laevis]
Length = 645
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C++C SY +Q RSADE T F C +C
Sbjct: 606 QCEKCKKKNCSYNQVQTRSADEPMTTFVLCNEC 638
>gi|146084432|ref|XP_001465005.1| putative RNA polymerase III C11 subunit [Leishmania infantum JPCM5]
gi|398014058|ref|XP_003860220.1| RNA polymerase III C11 subunit, putative [Leishmania donovani]
gi|134069101|emb|CAM67247.1| putative RNA polymerase III C11 subunit [Leishmania infantum JPCM5]
gi|322498440|emb|CBZ33513.1| RNA polymerase III C11 subunit, putative [Leishmania donovani]
Length = 151
Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 18/142 (12%)
Query: 13 FCSKCGTILPLFD-FKGD-VKCYVCKTSYGTQEQQPLL----LGPDILFLKR-FKGHFNL 65
FC C T+L + +G+ + C C+ + P + G IL ++ F H
Sbjct: 3 FCPFCSTLLLVVPHVEGNALACATCRYVHSVASASPQVPRNAFGEPILTIQHSFVSHNRQ 62
Query: 66 FLAVFEEIKAEYTI-------HFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMS---- 114
+ E+ E H K +T G I C+ +N S
Sbjct: 63 LMDAEEDPAMEAAASSSAAACHTTAAFAPVGKAETSAEGGQITTIPCQNEDNPCQSTKAY 122
Query: 115 YATLQLRSADEGQTIFFTCTKC 136
+ +Q+RSADE T+FF C +C
Sbjct: 123 FIQIQMRSADEPATVFFKCVEC 144
>gi|171687673|ref|XP_001908777.1| hypothetical protein [Podospora anserina S mat+]
gi|170943798|emb|CAP69450.1| unnamed protein product [Podospora anserina S mat+]
Length = 295
Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 76 EYTIHFNTVEKEK-QKDKTEIADGPIVER------KCKRCNNDTMSYATLQLRSADEGQT 128
E E EK Q++ + A P+ E+ KC +C +SY+ Q RSADE T
Sbjct: 221 ELASDAQRAEDEKLQQENMKKAQVPMAEKSISDALKCGKCGQKKVSYSQAQTRSADEPMT 280
Query: 129 IFFTCTKC 136
F CT C
Sbjct: 281 TFCECTVC 288
>gi|449017739|dbj|BAM81141.1| RNA polymerase III subunit [Cyanidioschyzon merolae strain 10D]
Length = 288
Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C+RC+ S+ LQ RSADE T F+ C +C
Sbjct: 250 RCERCSARKASFYQLQTRSADEPMTTFYRCLEC 282
>gi|218884729|ref|YP_002429111.1| DNA-directed RNA polymerase subunit M, partial [Desulfurococcus
kamchatkensis 1221n]
gi|218766345|gb|ACL11744.1| DNA-directed RNA polymerase subunit M [Desulfurococcus
kamchatkensis 1221n]
Length = 75
Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 102 ERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E C +C Y +Q R+ADE T FF CTKC
Sbjct: 33 EVTCPKCGWHEAYYWVIQTRAADEPPTRFFKCTKC 67
>gi|256077126|ref|XP_002574859.1| DNA-directed RNA polymerase [Schistosoma mansoni]
gi|108861851|gb|ABG21827.1| RNA polymerase III subunit C11-like protein [Schistosoma mansoni]
gi|353229178|emb|CCD75349.1| putative DNA-directed RNA polymerase [Schistosoma mansoni]
Length = 115
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E + + KC +C++ + +Q RSADE TI ++C KC
Sbjct: 66 EYSSSAQTDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCIKC 108
>gi|13541573|ref|NP_111261.1| DNA-directed RNA polymerase subunit M [Thermoplasma volcanium GSS1]
Length = 100
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C RC++ Y Q RSADE +T F+TC +C
Sbjct: 62 CPRCHHKGARYVLKQTRSADEPETKFYTCEEC 93
>gi|284161918|ref|YP_003400541.1| transcription termination factor Tfs [Archaeoglobus profundus DSM
5631]
gi|284011915|gb|ADB57868.1| transcription termination factor Tfs [Archaeoglobus profundus DSM
5631]
Length = 101
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 13/60 (21%)
Query: 87 EKQKDKTEIADGPIVERK----------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E ++++ EI P++E + C C N + Q+R+ADE +T F+ CTKC
Sbjct: 37 ESKRNENEI---PVIEERIETLPKTRVVCPYCGNTEAYWWIRQMRAADEPETRFYRCTKC 93
>gi|19173009|ref|NP_597560.1| DNA-DIRECTED RNA POLYMERASE III 12.5kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19168676|emb|CAD26195.1| DNA-DIRECTED RNA POLYMERASE III 12.5kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|449329727|gb|AGE95997.1| DNA-directed RNA polymerase III 12.5kDa subunit [Encephalitozoon
cuniculi]
Length = 104
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 108 CNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C ++ +S+ LQ RSADE TIF+ C +C
Sbjct: 70 CGSEEVSFVELQTRSADEPMTIFYKCIRC 98
>gi|126459602|ref|YP_001055880.1| DNA-directed RNA polymerase subunit M [Pyrobaculum calidifontis JCM
11548]
gi|126249323|gb|ABO08414.1| DNA-directed RNA polymerase, subunit M [Pyrobaculum calidifontis
JCM 11548]
Length = 124
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 103 RKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
R C +C +D + Q R+ADE T F+ CTKC
Sbjct: 83 RGCPKCGHDEAYFWVQQTRAADEPPTRFYKCTKC 116
>gi|332158918|ref|YP_004424197.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. NA2]
gi|331034381|gb|AEC52193.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. NA2]
Length = 110
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C +C Y LQ R+ DE TIFF C +C
Sbjct: 65 PTAKVTCPKCGYHEAWYWELQTRAGDEPSTIFFKCKRC 102
>gi|255575598|ref|XP_002528699.1| transcription elongation factor s-II, putative [Ricinus communis]
gi|223531871|gb|EEF33688.1| transcription elongation factor s-II, putative [Ricinus communis]
Length = 342
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y +Q RSADE T + TC C
Sbjct: 303 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 335
>gi|212720695|ref|NP_001131695.1| uncharacterized protein LOC100193056 [Zea mays]
gi|194692264|gb|ACF80216.1| unknown [Zea mays]
gi|195653763|gb|ACG46349.1| hypothetical protein [Zea mays]
gi|413923417|gb|AFW63349.1| hypothetical protein ZEAMMB73_646152 [Zea mays]
Length = 110
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTK 135
E+ P C+RCN+ + +Q+RSADE T + C K
Sbjct: 59 EMKSAPKTAVTCQRCNHGEAYFKQMQIRSADEPMTTIYRCCK 100
>gi|392566129|gb|EIW59305.1| hypothetical protein TRAVEDRAFT_28538 [Trametes versicolor
FP-101664 SS1]
Length = 106
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C+N + LQ+RSADE T F+ CT C
Sbjct: 68 CPKCDNGRAYFYQLQIRSADEPMTTFYRCTAC 99
>gi|189188138|ref|XP_001930408.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972014|gb|EDU39513.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 108
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 90 KDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KD D V+ ++C N + LQ+RSADE T F+ CT+C
Sbjct: 56 KDAWANVDKTEVQCPNEKCRNHEAYWYQLQIRSADEPMTAFYKCTQC 102
>gi|448927837|gb|AGE51409.1| transcription elongation factor S-II [Paramecium bursaria Chlorella
virus CviKI]
Length = 180
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ DG + +C +C + SY +Q RSADE T+F C C
Sbjct: 132 DPKDMPDGML---QCGKCKSRKTSYYEMQTRSADEPMTVFAKCHSC 174
>gi|395330908|gb|EJF63290.1| hypothetical protein DICSQDRAFT_102442 [Dichomitus squalens
LYAD-421 SS1]
Length = 106
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C+N + LQ+RSADE T F+ CT C
Sbjct: 68 CPKCDNGRAYFYQLQIRSADEPMTTFYRCTAC 99
>gi|308456771|ref|XP_003090804.1| hypothetical protein CRE_24855 [Caenorhabditis remanei]
gi|308260535|gb|EFP04488.1| hypothetical protein CRE_24855 [Caenorhabditis remanei]
Length = 108
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 88 KQKDKTEIADGP-------IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
K KD ++ GP I + +C C ++ + LQ RSADE TIF+ C
Sbjct: 45 KLKDIDDVLGGPGAWENAQITDERCPLCAHERAYFMQLQTRSADEPMTIFYRCA 98
>gi|225470966|ref|XP_002267122.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Vitis vinifera]
Length = 111
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 77 YTIHFNTVEKEKQK------------DKTEIADGPIVERKCKRCNNDTMSYATLQLRSAD 124
Y H T K K+K K ++ +GP + C CN + LQ RSAD
Sbjct: 31 YVCHIETKVKIKRKQRLVKKEIEPIFSKDDMKNGPTTDATCPHCNFGKAVFQQLQTRSAD 90
Query: 125 EGQTIFFTC 133
E + F+ C
Sbjct: 91 EPMSTFYWC 99
>gi|1085870|pir||S47663 transcription elongation factor TFIIS homolog - Chlorella virus
CV-K2
gi|565274|dbj|BAA04187.1| transcription elongation factor SII [Chlorella virus]
gi|448928857|gb|AGE52426.1| transcription elongation factor S-II [Paramecium bursaria Chlorella
virus CvsA1]
gi|448931619|gb|AGE55180.1| transcription elongation factor S-II [Paramecium bursaria Chlorella
virus MA-1E]
Length = 180
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ DG + +C +C + SY +Q RSADE T+F C C
Sbjct: 132 DPKDMPDGML---QCGKCKSRKTSYYEMQTRSADEPMTVFAKCHSC 174
>gi|402086070|gb|EJT80968.1| transcription elongation factor S-II [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 295
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 99 PIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P+VER +C +C +SY Q RSADE T F CT C
Sbjct: 245 PMVERSISDALECGKCKQKKVSYTQAQTRSADEPMTTFCECTVC 288
>gi|388514187|gb|AFK45155.1| unknown [Medicago truncatula]
Length = 369
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y +Q RSADE T + TC C
Sbjct: 330 KCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNC 362
>gi|448930913|gb|AGE54476.1| transcription elongation factor S-II [Paramecium bursaria Chlorella
virus KS1B]
Length = 180
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ DG + +C +C + SY +Q RSADE T+F C C
Sbjct: 132 DPKDMPDGML---QCGKCKSRKTSYYEMQTRSADEPMTVFAKCHSC 174
>gi|9631693|ref|NP_048472.1| hypothetical protein [Paramecium bursaria Chlorella virus 1]
gi|1131468|gb|AAC96492.1| hypothetical protein [Paramecium bursaria Chlorella virus 1]
Length = 180
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D ++ DG + +C +C + SY +Q RSADE T+F C C
Sbjct: 132 DPKDMPDGML---QCGKCKSRKTSYYEMQTRSADEPMTVFAKCHSC 174
>gi|406859226|gb|EKD12295.1| RNA polymerase 3 c11 subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 121
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKR--CNNDTMSYATLQLRSADEGQTIF 130
++ E F + K DKT+I +C + CN D ++ +Q+RSADE T F
Sbjct: 57 VRQERDDVFGGPDSWKNADKTKI--------QCPKNGCNGDEAAFFQMQIRSADEPMTGF 108
Query: 131 FTCTKC 136
+ C C
Sbjct: 109 YNCMSC 114
>gi|396081040|gb|AFN82659.1| DNA-directed RNA polymerase subunit M [Encephalitozoon romaleae
SJ-2008]
Length = 104
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 108 CNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C ++ +S+ LQ RSADE TIF+ C +C
Sbjct: 70 CGSEEVSFVELQTRSADEPMTIFYKCIRC 98
>gi|313768016|ref|YP_004061447.1| hypothetical protein BpV1_017c [Bathycoccus sp. RCC1105 virus BpV1]
gi|312599623|gb|ADQ91644.1| hypothetical protein BpV1_017c [Bathycoccus sp. RCC1105 virus BpV1]
Length = 171
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C RC + ++ +Q RSADE T+F TC C
Sbjct: 133 RCNRCKSYKTTFYQMQTRSADEPMTVFVTCHNC 165
>gi|357542240|gb|AET85000.1| transcription elongation factor [Micromonas pusilla virus SP1]
Length = 169
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C RC + +Y LQ RSADE T F +C C
Sbjct: 132 CNRCKSKKTTYYQLQTRSADEPMTTFVSCLNC 163
>gi|312599164|gb|ADQ91187.1| hypothetical protein BpV2_020c [Bathycoccus sp. RCC1105 virus BpV2]
Length = 171
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C RC + ++ +Q RSADE T+F TC C
Sbjct: 133 RCNRCKSYKTTFYQMQTRSADEPMTVFVTCHNC 165
>gi|313768224|ref|YP_004061904.1| hypothetical protein MpV1_021c [Micromonas sp. RCC1109 virus MpV1]
gi|312598920|gb|ADQ90944.1| hypothetical protein MpV1_021c [Micromonas sp. RCC1109 virus MpV1]
Length = 171
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 38 SYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIAD 97
S+ +P L PD L+ K+ + + +EI+ EY + E + Q D
Sbjct: 87 SHDVINMRPEELCPDGLYAKQIET------KIHKEIRKEYL----SREIKNQ-------D 129
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
G KC RC + +Y LQ RSADE T F +C C
Sbjct: 130 GFF---KCGRCKSMKTTYYQLQTRSADEPMTTFVSCLNC 165
>gi|171424|gb|AAA34580.1| DST1 [Saccharomyces cerevisiae]
gi|172773|gb|AAA88734.1| DNA strand transferase alpha [Saccharomyces cerevisiae]
Length = 309
Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER C +C +SY LQ RSADE T F TC C
Sbjct: 256 AQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 302
>gi|298714200|emb|CBJ27336.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 108
Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C CNN + +QLRSADE T F+ CT C
Sbjct: 71 CPFCNNKEAFFLMVQLRSADEPMTCFYKCTNC 102
>gi|290973573|ref|XP_002669522.1| hypothetical protein NAEGRDRAFT_82114 [Naegleria gruberi]
gi|284083071|gb|EFC36778.1| hypothetical protein NAEGRDRAFT_82114 [Naegleria gruberi]
Length = 176
Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 51 PDILFLKRFKGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVER---KCKR 107
P+++F+ G+ + + I+ I + ++ I D P KC +
Sbjct: 86 PEVIFMDIMDGNEDYL----DWIRKSTIIGKKLEIQNSSTNENTIIDKPAAVSSTFKCTK 141
Query: 108 CNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C + +Y LQ RS+DE T F TC C
Sbjct: 142 CQSTQCTYYQLQTRSSDEPMTTFITCLNC 170
>gi|388581956|gb|EIM22262.1| hypothetical protein WALSEDRAFT_17028 [Wallemia sebi CBS 633.66]
Length = 110
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 78 TIHFNTVEKEKQKDKTEIADGPIVER-------KCKRCNNDTMSYATLQLRSADEGQTIF 130
T FNT K K+K ++ G + +C +C+N + +Q+RSADE T F
Sbjct: 36 TKQFNTRHKLKRKQVDDVLGGEDSWKNVDQTSAECPKCSNGRAFFMQIQIRSADEPMTTF 95
Query: 131 FTCT 134
+ CT
Sbjct: 96 YRCT 99
>gi|260797171|ref|XP_002593577.1| hypothetical protein BRAFLDRAFT_88149 [Branchiostoma floridae]
gi|229278803|gb|EEN49588.1| hypothetical protein BRAFLDRAFT_88149 [Branchiostoma floridae]
Length = 588
Score = 35.4 bits (80), Expect = 6.9, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC +C ++Y +Q RSADE T F C +C
Sbjct: 213 KCGKCKKRNVTYNQVQTRSADEPMTTFCYCNEC 245
Score = 35.4 bits (80), Expect = 6.9, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC +C ++Y +Q RSADE T F C +C
Sbjct: 462 KCGKCKKRNVTYNQVQTRSADEPMTTFCYCNEC 494
>gi|170111316|ref|XP_001886862.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638220|gb|EDR02499.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 294
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C RC Y Q RSADE T F TCT C
Sbjct: 255 QCSRCKQRKCRYRQAQTRSADEPMTTFVTCTNC 287
>gi|365986008|ref|XP_003669836.1| hypothetical protein NDAI_0D02790 [Naumovozyma dairenensis CBS 421]
gi|343768605|emb|CCD24593.1| hypothetical protein NDAI_0D02790 [Naumovozyma dairenensis CBS 421]
Length = 308
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER C +C +SY LQ RSADE T F TC C
Sbjct: 255 AQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 301
>gi|259146459|emb|CAY79716.1| Dst1p [Saccharomyces cerevisiae EC1118]
Length = 309
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER C +C +SY LQ RSADE T F TC C
Sbjct: 256 AQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 302
>gi|407924358|gb|EKG17410.1| Zinc finger TFIIS-type protein [Macrophomina phaseolina MS6]
Length = 121
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 90 KDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KD E D V+ +C + + +Q+RSADE T FF CTKC
Sbjct: 69 KDSWENVDQTEVQCPNPQCGGERAYFYQIQIRSADEPMTSFFKCTKC 115
>gi|367015614|ref|XP_003682306.1| hypothetical protein TDEL_0F02840 [Torulaspora delbrueckii]
gi|359749968|emb|CCE93095.1| hypothetical protein TDEL_0F02840 [Torulaspora delbrueckii]
Length = 295
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G VER C +C +SY LQ RSADE T F TC C
Sbjct: 242 AQGATVERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEVC 288
>gi|390937792|ref|YP_006401530.1| transcription termination factor Tfs [Desulfurococcus fermentans
DSM 16532]
gi|390190899|gb|AFL65955.1| transcription termination factor Tfs [Desulfurococcus fermentans
DSM 16532]
Length = 114
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 96 ADGPIV-ERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A+ P+ E C +C Y +Q R+ADE T FF CTKC
Sbjct: 65 ANLPVTREVTCPKCGWHEAYYWVIQTRAADEPPTRFFKCTKC 106
>gi|6321395|ref|NP_011472.1| Dst1p [Saccharomyces cerevisiae S288c]
gi|1729915|sp|P07273.4|TFS2_YEAST RecName: Full=Transcription elongation factor S-II; AltName:
Full=DNA strand transfer protein alpha; Short=STP-alpha;
AltName: Full=DNA strand transferase 1; AltName:
Full=Pyrimidine pathway regulatory protein 2
gi|34810565|pdb|1PQV|S Chain S, Rna Polymerase Ii-Tfiis Complex
gi|218517|dbj|BAA02046.1| transcriptional elongation factor S-II [Saccharomyces cerevisiae]
gi|1322528|emb|CAA96744.1| DST1 [Saccharomyces cerevisiae]
gi|151943248|gb|EDN61561.1| RNA polymerase II elongation factor [Saccharomyces cerevisiae
YJM789]
gi|190407007|gb|EDV10274.1| RNA polymerase II elongation factor [Saccharomyces cerevisiae
RM11-1a]
gi|256271330|gb|EEU06396.1| Dst1p [Saccharomyces cerevisiae JAY291]
gi|285812157|tpg|DAA08057.1| TPA: Dst1p [Saccharomyces cerevisiae S288c]
gi|323304905|gb|EGA58662.1| Dst1p [Saccharomyces cerevisiae FostersB]
gi|323309085|gb|EGA62313.1| Dst1p [Saccharomyces cerevisiae FostersO]
gi|323337623|gb|EGA78868.1| Dst1p [Saccharomyces cerevisiae Vin13]
gi|323348527|gb|EGA82771.1| Dst1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354949|gb|EGA86780.1| Dst1p [Saccharomyces cerevisiae VL3]
gi|349578179|dbj|GAA23345.1| K7_Dst1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765583|gb|EHN07090.1| Dst1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299216|gb|EIW10310.1| Dst1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 309
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER C +C +SY LQ RSADE T F TC C
Sbjct: 256 AQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 302
>gi|156841304|ref|XP_001644026.1| hypothetical protein Kpol_1026p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156114659|gb|EDO16168.1| hypothetical protein Kpol_1026p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 323
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER C +C +SY LQ RSADE T F TC C
Sbjct: 270 AQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 316
>gi|116326785|ref|YP_803322.1| hypothetical protein TNAV2c_gp099 [Trichoplusia ni ascovirus 2c]
gi|102231793|gb|ABF70616.1| hypothetical protein [Trichoplusia ni ascovirus 2c]
Length = 85
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 85 EKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E+ Q K E+ +G + +C RCN+ + Q+R DE T+F C+ C
Sbjct: 31 EESLQLQKPEVEEGAL---QCNRCNSHKIHCTARQVRGGDEPMTVFAICSNC 79
>gi|401625778|gb|EJS43771.1| dst1p [Saccharomyces arboricola H-6]
Length = 309
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER C +C +SY LQ RSADE T F TC C
Sbjct: 256 AQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 302
>gi|451847238|gb|EMD60546.1| hypothetical protein COCSADRAFT_163870 [Cochliobolus sativus
ND90Pr]
gi|451997829|gb|EMD90294.1| hypothetical protein COCHEDRAFT_1178878 [Cochliobolus
heterostrophus C5]
Length = 118
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 106 KRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++C N + LQ+RSADE T F+ CT+C
Sbjct: 82 EKCRNHEAYWYQLQIRSADEPMTAFYKCTQC 112
>gi|255935413|ref|XP_002558733.1| Pc13g02950 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583353|emb|CAP91364.1| Pc13g02950 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 116
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 92 KTEIADGPIVERKC--KRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E A+ V +C + CN + + LQ+RSADE T F CT C
Sbjct: 63 KEEFANADSVATQCPAESCNGERAYFFQLQIRSADEPMTTFLKCTSC 109
>gi|157868132|ref|XP_001682619.1| putative RNA polymerase III C11 subunit [Leishmania major strain
Friedlin]
gi|68126074|emb|CAJ07127.1| putative RNA polymerase III C11 subunit [Leishmania major strain
Friedlin]
Length = 151
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 18/142 (12%)
Query: 13 FCSKCGTILPLFD-FKGD-VKCYVCKTSYGTQEQQPLL----LGPDILFLKR-FKGHFNL 65
FC C T+L + +G+ + C C+ + P + G IL ++ F H
Sbjct: 3 FCPFCSTLLLVVPHVEGNALVCATCRYVHSVASASPQVPRNAFGEPILTIQHSFVAHNRQ 62
Query: 66 FLAVFEEIKAEYTI-------HFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMS---- 114
+ E+ E H K +T G I C+ +N S
Sbjct: 63 LMDAEEDPAMEAAASSSAAACHTTAAFTPVVKAETSAEGGQITTIPCQNEDNPCQSTKAY 122
Query: 115 YATLQLRSADEGQTIFFTCTKC 136
+ +Q+RSADE T+FF C +C
Sbjct: 123 FIQIQMRSADEPATVFFKCVEC 144
>gi|363755550|ref|XP_003647990.1| hypothetical protein Ecym_7343 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892026|gb|AET41173.1| hypothetical protein Ecym_7343 [Eremothecium cymbalariae
DBVPG#7215]
Length = 306
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 96 ADGPIVER------KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER +C +C +SY LQ RSADE T F TC C
Sbjct: 253 AQGATLERSVTDRFQCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 299
>gi|61679514|pdb|1Y1V|S Chain S, Refined Rna Polymerase Ii-tfiis Complex
gi|61679527|pdb|1Y1Y|S Chain S, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
Length = 179
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER C +C +SY LQ RSADE T F TC C
Sbjct: 126 AQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 172
>gi|392585297|gb|EIW74637.1| hypothetical protein CONPUDRAFT_113195 [Coniophora puteana
RWD-64-598 SS2]
Length = 106
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 85 EKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E K D T I+ C +CN+ + LQ+RSADE T F+ C C
Sbjct: 56 EMWKHADSTAIS--------CDKCNHGRAYFYQLQIRSADEPMTTFYRCAGC 99
>gi|353244383|emb|CCA75784.1| probable Rpc11-DNA-directed RNA polymerase III subunit C11
[Piriformospora indica DSM 11827]
Length = 98
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 78 TIHFNTVEKEKQKDKTEIAD---GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCT 134
TI T K KQ D D G C +C + + LQ+RSADE TIF+ C
Sbjct: 28 TIKSRTHLKRKQVDDVLGGDDSWGNQTPAPCPKCEHPMAHFMELQIRSADEPMTIFYKCA 87
>gi|288931770|ref|YP_003435830.1| transcription termination factor Tfs [Ferroglobus placidus DSM
10642]
gi|288894018|gb|ADC65555.1| transcription termination factor Tfs [Ferroglobus placidus DSM
10642]
Length = 102
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P C C N + QLR+ADE + FF CTKC
Sbjct: 57 PTTNVICPACGNREAYWWLRQLRAADESEVRFFRCTKC 94
>gi|331242717|ref|XP_003334004.1| hypothetical protein PGTG_15734 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312994|gb|EFP89585.1| hypothetical protein PGTG_15734 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 382
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C RC +Y +Q RSADE T F TC C
Sbjct: 343 RCARCGQRKCTYYQMQTRSADEPMTTFVTCVNC 375
>gi|320100252|ref|YP_004175844.1| DNA-directed RNA polymerase subunit M [Desulfurococcus mucosus DSM
2162]
gi|319752604|gb|ADV64362.1| DNA-directed RNA polymerase, subunit M [Desulfurococcus mucosus DSM
2162]
Length = 114
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 96 ADGPIV-ERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A+ P+ E C +C Y LQ R+ADE T FF CT+C
Sbjct: 65 ANLPVTREVTCPKCGWHEAYYWMLQTRAADEPPTRFFKCTRC 106
>gi|116789178|gb|ABK25146.1| unknown [Picea sitchensis]
Length = 331
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC +C +Y LQ RSADE T F TC C
Sbjct: 292 KCGKCGQRMCTYYQLQTRSADEPMTTFVTCVNC 324
>gi|408380972|ref|ZP_11178522.1| transcription termination factor Tfs [Methanobacterium formicicum
DSM 3637]
gi|407816237|gb|EKF86799.1| transcription termination factor Tfs [Methanobacterium formicicum
DSM 3637]
Length = 104
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 46/127 (36%), Gaps = 34/127 (26%)
Query: 12 EFCSKCGTIL-PLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVF 70
EFC KCGT+L P KGD RF+ +
Sbjct: 2 EFCPKCGTVLFP----KGD----------------------------RFECSCGYQKKIT 29
Query: 71 EEIKAEYTIHFNTVEKEKQ-KDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
+E +EY + KE ++ P + C +C N + Q R ADE +T
Sbjct: 30 KESLSEYEVSEKVAPKENVIVTGDDVKTLPTTKAVCPKCGNRLAFWWLQQTRRADESETR 89
Query: 130 FFTCTKC 136
F CTKC
Sbjct: 90 FLRCTKC 96
>gi|320582848|gb|EFW97065.1| General transcription elongation factor TFIIS [Ogataea
parapolymorpha DL-1]
Length = 294
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +CN +SY +Q RSADE T F TC C
Sbjct: 256 CGKCNKREVSYYQMQTRSADEPLTTFCTCESC 287
>gi|356509090|ref|XP_003523285.1| PREDICTED: putative transcription elongation factor S-II-like
[Glycine max]
Length = 368
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y +Q RSADE T + TC C
Sbjct: 329 KCGRCGQRKTTYYQMQTRSADEPMTTYVTCVVC 361
>gi|66362552|ref|XP_628242.1| RNA polymerase III subunit C11 [Cryptosporidium parvum Iowa II]
gi|46229854|gb|EAK90672.1| RNA polymerase III subunit C11 [Cryptosporidium parvum Iowa II]
Length = 62
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C+ + LQ+RSADE T F+TC KC
Sbjct: 24 CPKCSFSEAYFFQLQIRSADEPMTSFYTCVKC 55
>gi|367045824|ref|XP_003653292.1| hypothetical protein THITE_2017867, partial [Thielavia terrestris
NRRL 8126]
gi|347000554|gb|AEO66956.1| hypothetical protein THITE_2017867, partial [Thielavia terrestris
NRRL 8126]
Length = 117
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 19/122 (15%)
Query: 13 FCSKCGTILPLFDFKGDVKCYV-CKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
FC+ CG +LP KG K + C P F L++ +
Sbjct: 9 FCTDCGNLLP--PSKGSEKNILHCDCCGAENRDHPWRTVTTRTKPSDFPSALRQKLSIVQ 66
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
T+ + V+ E+ T+ C +C + Y+ +Q RSADEG TI +
Sbjct: 67 ------TVERHQVQTERIDANTD----------CPKCGKRGVRYSEVQQRSADEGSTIIY 110
Query: 132 TC 133
C
Sbjct: 111 NC 112
>gi|407465720|ref|YP_006776602.1| transcription termination factor Tfs [Candidatus Nitrosopumilus sp.
AR2]
gi|407048908|gb|AFS83660.1| transcription termination factor Tfs [Candidatus Nitrosopumilus sp.
AR2]
Length = 105
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P V+ C++C +D Q RSADE T F+ C KC
Sbjct: 60 PTVKIDCEKCGHDEAVGWMFQTRSADEPTTRFYRCQKC 97
>gi|374326953|ref|YP_005085153.1| transcription termination factor Tfs [Pyrobaculum sp. 1860]
gi|356642222|gb|AET32901.1| transcription termination factor Tfs [Pyrobaculum sp. 1860]
Length = 109
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ R C +C +D + Q R+ADE T F+ CTKC
Sbjct: 65 VKTRGCPKCGHDEAYFWVQQTRAADEPPTRFYKCTKC 101
>gi|207345303|gb|EDZ72168.1| YGL043Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|323333438|gb|EGA74832.1| Dst1p [Saccharomyces cerevisiae AWRI796]
Length = 242
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER C +C +SY LQ RSADE T F TC C
Sbjct: 189 AQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 235
>gi|19114147|ref|NP_593235.1| DNA-directed RNA polymerase III complex subunit Rpc11
[Schizosaccharomyces pombe 972h-]
gi|3334318|sp|O13896.1|RPC10_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerases III 12.5 kDa
polypeptide; AltName: Full=RNA polymerase III subunit
C11
gi|4877777|gb|AAD31425.1|AF126532_1 putative DNA-directed RNA polymerase III C11 subunit
[Schizosaccharomyces pombe]
gi|2414598|emb|CAB16575.1| DNA-directed RNA polymerase III complex subunit Rpc11
[Schizosaccharomyces pombe]
gi|2921268|gb|AAD03488.1| RNA polymerase subunit [Schizosaccharomyces pombe]
Length = 109
Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 107 RCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C+N+ + LQ+RSADE + F+ CTKC
Sbjct: 73 KCDNNRAYFFQLQIRSADEPMSTFYRCTKC 102
>gi|4217|emb|CAA24928.1| unnamed protein product [Saccharomyces cerevisiae]
Length = 128
Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER C +C +SY LQ RSADE T F TC C
Sbjct: 75 AQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 121
>gi|322510696|gb|ADX06010.1| putative transcription factor TFIIS_C family protein [Organic Lake
phycodnavirus 1]
Length = 168
Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC +C + +Y LQ RSADE T F TC C
Sbjct: 130 KCGKCKSKECTYYQLQTRSADEPMTTFVTCISC 162
>gi|448738512|ref|ZP_21720536.1| DNA-directed RNA-polymerase subunit M [Halococcus thailandensis JCM
13552]
gi|445801640|gb|EMA51969.1| DNA-directed RNA-polymerase subunit M [Halococcus thailandensis JCM
13552]
Length = 106
Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 76 EYTIHFNTVEKEKQKDKTEIADG------PIVERKCKRCNNDTMSYATLQLRSADEGQTI 129
E F + E + D E ++ P E +C+ C + Y Q SADE T
Sbjct: 32 EVAASFVSTESQSDSDVIETSEDAADEGKPTAEVECEECGAERAWYTIKQTGSADEPPTR 91
Query: 130 FFTCTKC 136
FF CT+C
Sbjct: 92 FFKCTEC 98
>gi|291540993|emb|CBL14104.1| hypothetical protein RO1_38820 [Roseburia intestinalis XB6B4]
Length = 74
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 89 QKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K++TE+ G ++E +CK+CN M Y SA Q I C +C
Sbjct: 2 NKERTELNKGNVIEIRCKKCNKLMMEYFVCGDDSAVALQNIGIKCDRC 49
>gi|345566736|gb|EGX49678.1| hypothetical protein AOL_s00078g167 [Arthrobotrys oligospora ATCC
24927]
Length = 316
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 63 FNLFLAVFEEI-KAEYTIHFNTVEKEKQKDKTEIADGPIV---ERKCKRCNNDTMSYATL 118
L L EE+ AE +E+E K+ +A P + +C +C +SY+
Sbjct: 233 MRLALMSSEEMASAERKREDEKIEQENMKEAM-VAKAPTSVTDQLRCGKCGKRNVSYSQA 291
Query: 119 QLRSADEGQTIFFTCTKC 136
Q RSADE T F C +C
Sbjct: 292 QTRSADEPMTTFCECLQC 309
>gi|6723838|emb|CAB66386.1| archaeal transcription factor S [Methanothermococcus
thermolithotrophicus]
Length = 105
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 61 GHFNLFLAVFEEIKAEYTIHFNTVEK--EKQKDKTEIADG---PIVERKCKRCNNDTMSY 115
G + FEE T + EK K+++ T I D P +C C N S+
Sbjct: 17 GRLKCTVCGFEEELGNRTEEYELKEKIEAKKQEVTVIEDVDTLPTTRIECPSCGNMEASW 76
Query: 116 ATLQLRSADEGQTIFFTCTKC 136
Q R ADE +T F+ C KC
Sbjct: 77 WLQQTRCADEPETRFYKCKKC 97
>gi|367006041|ref|XP_003687752.1| hypothetical protein TPHA_0K01860 [Tetrapisispora phaffii CBS 4417]
gi|357526057|emb|CCE65318.1| hypothetical protein TPHA_0K01860 [Tetrapisispora phaffii CBS 4417]
Length = 303
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER C +C +SY LQ RSADE T F TC C
Sbjct: 250 AQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 296
>gi|322511107|gb|ADX06420.1| putative transcription elongation factor TFIIS_C domain-containing
protein [Organic Lake phycodnavirus 2]
Length = 168
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC +C + +Y LQ RSADE T F TC C
Sbjct: 130 KCGKCKSKECTYYQLQTRSADEPMTTFVTCISC 162
>gi|313844000|ref|YP_004061663.1| hypothetical protein OlV1_030c [Ostreococcus lucimarinus virus
OlV1]
gi|312599385|gb|ADQ91407.1| hypothetical protein OlV1_030c [Ostreococcus lucimarinus virus
OlV1]
gi|357541718|gb|AET84480.1| hypothetical protein OLOG_00014 [Ostreococcus lucimarinus virus
OlV4]
Length = 178
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C RC + +Y LQ RSADE T F +C C
Sbjct: 141 CARCKSKKTTYYQLQTRSADEPMTTFVSCLNC 172
>gi|426192898|gb|EKV42833.1| hypothetical protein AGABI2DRAFT_195610 [Agaricus bisporus var.
bisporus H97]
Length = 293
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C RC Y Q RSADE T F TCT C
Sbjct: 254 QCGRCKQRQCRYRQAQTRSADEPMTTFVTCTNC 286
>gi|366987517|ref|XP_003673525.1| hypothetical protein NCAS_0A05840 [Naumovozyma castellii CBS 4309]
gi|342299388|emb|CCC67142.1| hypothetical protein NCAS_0A05840 [Naumovozyma castellii CBS 4309]
Length = 307
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER C +C +SY LQ RSADE T F TC C
Sbjct: 254 AQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 300
>gi|50286491|ref|XP_445674.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524979|emb|CAG58585.1| unnamed protein product [Candida glabrata]
Length = 306
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER C +C +SY LQ RSADE T F TC C
Sbjct: 253 AQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 299
>gi|403178039|ref|XP_003336480.2| transcription elongation factor S-II [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375173311|gb|EFP92061.2| transcription elongation factor S-II [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 382
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C RC +Y +Q RSADE T F TC C
Sbjct: 343 RCARCGQRKCTYYQMQTRSADEPMTTFVTCVNC 375
>gi|303290875|ref|XP_003064724.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453750|gb|EEH51058.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 325
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC +C +Y LQ RSADE T F TC C
Sbjct: 286 KCGKCKQRKCTYYQLQTRSADEPMTTFVTCVNC 318
>gi|409075972|gb|EKM76347.1| hypothetical protein AGABI1DRAFT_45124 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 293
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C RC Y Q RSADE T F TCT C
Sbjct: 254 QCGRCKQRQCRYRQAQTRSADEPMTTFVTCTNC 286
>gi|325187761|emb|CCA22306.1| DNAdirected RNA polymerases III 12.5 kDa polypeptide putative
[Albugo laibachii Nc14]
Length = 105
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 102 ERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E +C C ++ + +Q+RSADE T F+ C +C
Sbjct: 65 EVRCPHCEHNHAYFMQIQIRSADEPSTTFYKCVQC 99
>gi|312283193|dbj|BAJ34462.1| unnamed protein product [Thellungiella halophila]
Length = 381
Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC RC +Y +Q RSADE T + TC C
Sbjct: 342 KCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 374
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,113,974,270
Number of Sequences: 23463169
Number of extensions: 81012808
Number of successful extensions: 170619
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 169314
Number of HSP's gapped (non-prelim): 1219
length of query: 136
length of database: 8,064,228,071
effective HSP length: 101
effective length of query: 35
effective length of database: 9,989,415,298
effective search space: 349629535430
effective search space used: 349629535430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)