BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4748
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1XHV8|RPA12_PANTR DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes
GN=ZNRD1 PE=3 SV=1
Length = 126
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FCS CG++LPL + V C C + + ++ F+G
Sbjct: 13 FQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFN---------------INVRDFEGKVVKT 57
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + +VE+ + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 58 SVVFHQLGTAMPM---SVEEGPE------CQGPVVDRRCPRCGHEGMAYHTRQMRSADEG 108
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 109 QTVFYTCTNC 118
>sp|Q9P1U0|RPA12_HUMAN DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens
GN=ZNRD1 PE=1 SV=1
Length = 126
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FCS CG++LPL + V C C + + ++ F+G
Sbjct: 13 FQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFN---------------INVRDFEGKVVKT 57
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + +VE+ + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 58 SVVFHQLGTAMPM---SVEEGPE------CQGPVVDRRCPRCGHEGMAYHTRQMRSADEG 108
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 109 QTVFYTCTNC 118
>sp|Q5TM50|RPA12_MACMU DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta
GN=ZNRD1 PE=3 SV=1
Length = 126
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FCS CG++LPL + V C C + + ++ F+G
Sbjct: 13 FQSDLDFCSDCGSVLPLPGAQDTVTCTRCGFN---------------INVRDFEGKVVKT 57
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + +VE+ + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 58 SVVFHQLGTAMPM---SVEEGPE------CQGPVVDRRCPRCGHEGMAYHTRQMRSADEG 108
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 109 QTVFYTCTNC 118
>sp|Q1RMP0|RPA12_BOVIN DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus GN=ZNRD1
PE=2 SV=1
Length = 123
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S ++ + ++ ++F K
Sbjct: 10 FQSDLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNK--------- 60
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
L + E F GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 61 LGTAMPLSMEEGPEFQ---------------GPVVDRRCSRCGHEGMAYHTRQMRSADEG 105
Query: 127 QTIFFTCTKC 136
QT+F+TCT C
Sbjct: 106 QTVFYTCTNC 115
>sp|Q6MFY5|RPA12_RAT DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus
GN=Znrd1 PE=3 SV=1
Length = 123
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S + ++ F G
Sbjct: 10 FQSDLDFCPDCGSVLPLPGVQDTVICPRCGFS---------------IDVRDFGGKVVKT 54
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ + D+ + GP+V+R+C RC ++ M+Y T Q+RSADEG
Sbjct: 55 SVVFNKLGTVIPMSV---------DEGPESQGPVVDRRCSRCGHEGMAYYTRQMRSADEG 105
Query: 127 QTIFFTCTKC 136
QT+F+TC C
Sbjct: 106 QTVFYTCINC 115
>sp|Q791N7|RPA12_MOUSE DNA-directed RNA polymerase I subunit RPA12 OS=Mus musculus
GN=Znrd1 PE=2 SV=1
Length = 123
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 24/130 (18%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF 66
F + +FC CG++LPL + V C C S + ++ +G
Sbjct: 10 FQSDLDFCPDCGSVLPLPGIQDTVICSRCGFS---------------IDVRDCEGKVVKT 54
Query: 67 LAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEG 126
VF ++ A TI + E + + GP+++R+C RC ++ M+Y T Q+RSADEG
Sbjct: 55 SVVFNKLGA--TIPLSVDEGPELQ-------GPVIDRRCPRCGHEGMAYHTRQMRSADEG 105
Query: 127 QTIFFTCTKC 136
QT+F+TC C
Sbjct: 106 QTVFYTCINC 115
>sp|P32529|RPA12_YEAST DNA-directed RNA polymerase I subunit RPA12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA12 PE=1
SV=1
Length = 125
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 92 KTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K E+ DG ++ KC +C N+ M+Y TLQLRSADEG T+F+TCT C
Sbjct: 73 KNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSC 117
>sp|O94703|RPA12_SCHPO DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa12 PE=3 SV=1
Length = 119
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 21/124 (16%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEE 72
FCS+CG +L + C C++ Y +++ L++ K + F +
Sbjct: 9 FCSECGNLLESTTAQW-TTCDQCQSVYPSEQFANLVV--------ETKSSASAFPSA--- 56
Query: 73 IKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFT 132
+K +++I V+ E QK+ + +E KC +C ND M++ TLQLRSADEG T+F+
Sbjct: 57 LKLKHSI----VQVESQKE-----EAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYE 107
Query: 133 CTKC 136
C +C
Sbjct: 108 CPRC 111
>sp|Q56254|RPOM_THECE DNA-directed RNA polymerase subunit M OS=Thermococcus celer GN=rpoM
PE=1 SV=1
Length = 110
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P + C +C NDT + +Q R+ DE TIF+ CTKC
Sbjct: 65 PTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKC 102
>sp|O27369|RPOM_METTH DNA-directed RNA polymerase subunit M OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoM PE=3 SV=2
Length = 104
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 30/125 (24%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFE 71
EFC KCG ++ F +G KC G + + K + V E
Sbjct: 2 EFCPKCGAVM--FPSEGKFKCQC---------------GYEKDITDKLKDKYR----VSE 40
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
E++A+ TI F ++ P +C +C N + Q R ADE +T FF
Sbjct: 41 EVEAKETIIFTG---------DDVNTLPTTRVECPKCGNMEAFWWLQQTRRADESETRFF 91
Query: 132 TCTKC 136
CT+C
Sbjct: 92 RCTRC 96
>sp|Q07271|RPOM_SULAC DNA-directed RNA polymerase subunit M OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoM PE=3 SV=2
Length = 111
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C C ND + LQ RSADE T F+ CTKC
Sbjct: 72 CPSCGNDEAYFWILQTRSADEPATRFYKCTKC 103
>sp|O29033|RPOM_ARCFU DNA-directed RNA polymerase subunit M OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoM PE=3 SV=1
Length = 103
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 83 TVEKEKQKDKTEIADG------PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
++ E+ K+ + +G P + C C ++ + QLR+ADE + FF CTKC
Sbjct: 36 VIKVERNKEDVPVIEGENLKTLPTTKAICPACGHNEAFWWLRQLRAADESEVRFFRCTKC 95
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 96 ADGPIVERK------CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
A G +ER C +C +SY LQ RSADE T F TC C
Sbjct: 256 AQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 302
>sp|O13896|RPC10_SCHPO DNA-directed RNA polymerase III subunit RPC10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc11 PE=3 SV=1
Length = 109
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 107 RCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C+N+ + LQ+RSADE + F+ CTKC
Sbjct: 73 KCDNNRAYFFQLQIRSADEPMSTFYRCTKC 102
>sp|P0C8F6|TFS2_ASFM2 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-147
PE=2 SV=1
Length = 243
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 90 KDKTEI---ADGPIVER-----KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K+KTEI + + E+ KC C +Y +Q R+ DE TIF TC KC
Sbjct: 183 KEKTEITLRSQQKVAEKTSQLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKC 237
>sp|P0C8F8|TFS2_ASFWA Transcription factor S-II-related protein OS=African swine fever
virus (isolate Warthog/Namibia/Wart80/1980) GN=War-150
PE=2 SV=1
Length = 243
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 90 KDKTEI---ADGPIVER-----KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K+KTEI + + E+ KC C +Y +Q R+ DE TIF TC KC
Sbjct: 183 KEKTEITLRSQQKVAEKTSQLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKC 237
>sp|P0C8F7|TFS2_ASFP4 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-152 PE=2 SV=1
Length = 243
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 90 KDKTEI---ADGPIVER-----KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K+KTEI + + E+ KC C +Y +Q R+ DE TIF TC KC
Sbjct: 183 KEKTEITLRSQQKVAEKTSQLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKC 237
>sp|P27948|TFS2_ASFB7 Transcription factor S-II-related protein OS=African swine fever
virus (strain Badajoz 1971 Vero-adapted) GN=BA71V-140
PE=2 SV=1
Length = 243
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 90 KDKTEI---ADGPIVER-----KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K+KTEI + + E+ KC C +Y +Q R+ DE TIF TC KC
Sbjct: 183 KEKTEITLRSQQKVAEKTSQLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKC 237
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC +C +Y LQ RSADE T F C +C
Sbjct: 274 KCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
>sp|Q5UQS8|TFS2_MIMIV Transcription factor S-II-related protein OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R339 PE=3 SV=1
Length = 173
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 88 KQKDKTEIADGPIVERK-CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KQ + + VE K C C N + + LQ RSADE T F+ C C
Sbjct: 116 KQMTEETLNQMATVEWKPCYACKNTSYHFYQLQTRSADEPMTTFYICKNC 165
>sp|P0C8F5|TFS2_ASFK5 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-151 PE=2
SV=1
Length = 243
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 90 KDKTEI---ADGPIVER-----KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K+KTEI + + E+ KC C +Y +Q R+ DE TI+ TC KC
Sbjct: 183 KEKTEITLRSQQKVAEKTSQLYKCPNCKQRMCTYREVQTRALDEPSTIYCTCKKC 237
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +SY +Q RSADE T F CT C
Sbjct: 255 CGKCKQKKVSYYQMQTRSADEPMTTFCECTVC 286
>sp|Q7QEI1|RTEL1_ANOGA Regulator of telomere elongation helicase 1 homolog OS=Anopheles
gambiae GN=AGAP000634 PE=3 SV=5
Length = 991
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 25 DFKGDVKCYVCKTSYGTQEQQPLLLGPD---ILFLKRFKGHFN------LFLAVFEEIKA 75
DF +VKC + SY T Q + + +LF+K+ FN L LA+ IK
Sbjct: 911 DFLREVKCSLSAGSYKTFLQSLAVYNRNSDFVLFIKQLCSCFNKPHLHYLLLAMRRFIKQ 970
Query: 76 EYTIHFNTV 84
E+T+ F+T+
Sbjct: 971 EHTLEFDTI 979
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C +C +Y +Q RSADE T F C +C
Sbjct: 308 RCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 340
>sp|Q58548|RPOM_METJA DNA-directed RNA polymerase subunit M OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoM PE=3 SV=1
Length = 108
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 99 PIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
P +C +C ++ + Q R ADE +T F+ C KC
Sbjct: 63 PTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKC 100
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C +C +Y +Q RSADE T F C +C
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 341
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC +C +Y LQ RS+DE T F C +C
Sbjct: 269 KCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLEC 301
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C +C +Y +Q RSADE T F C +C
Sbjct: 310 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCNEC 342
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +Y +Q RSADE T F C +C
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 294
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +Y +Q RSADE T F C +C
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 294
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +Y +Q RSADE T F C +C
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 294
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +Y +Q RSADE T F C +C
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 294
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +Y +Q RS+DE T F C +C
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNEC 292
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +Y +Q RS+DE T F C +C
Sbjct: 262 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNEC 293
>sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC11 PE=1
SV=1
Length = 110
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 108 CNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C ++ + LQ+RSADE T F+ C C
Sbjct: 75 CGGESAYFFQLQIRSADEPMTTFYKCVNC 103
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +Y +Q RS+DE T + C +C
Sbjct: 261 CNKCRKKNCTYTQVQTRSSDEPMTTYVVCNEC 292
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C +Y +Q RS+DE T + C +C
Sbjct: 261 CNKCRKKNCTYTQVQTRSSDEPMTTYVVCNEC 292
>sp|Q197A5|VF349_IIV3 Putative transcription elongation factor S-II-like protein 055R
OS=Invertebrate iridescent virus 3 GN=IIV3-055R PE=3
SV=1
Length = 137
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
E+++G + +C +C+ + + + Q RS DE TIF +C+ C
Sbjct: 92 EVSEGVL---RCGKCDCTKILWFSKQTRSMDEPTTIFASCSNC 131
>sp|Q91FH5|VF349_IIV6 Putative transcription elongation factor S-II-like protein 349L
OS=Invertebrate iridescent virus 6 GN=IIV6-349L PE=3
SV=1
Length = 140
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 80 HFNTVEKEKQ---KDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
F +EKE+ + E+A+G I KCK C ++ + + Q RS DE ++F C+ C
Sbjct: 79 QFLKIEKEEDNFLESPLEVAEGAI---KCK-CGSERVFSFSKQTRSGDESTSVFALCSSC 134
>sp|Q6GZP4|081R_FRG3G Putative transcription elongation factor S-II-like protein 81R
OS=Frog virus 3 (isolate Goorha) GN=FV3-081R PE=4 SV=1
Length = 92
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
KC C + + Q RSADE T+F C++C
Sbjct: 54 KCPGCGSRRVHALQRQTRSADEPMTLFAMCSEC 86
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+C +C +Y LQ RSADE T F C
Sbjct: 278 QCGKCKQRKCTYTQLQTRSADEPPTTFVKC 307
>sp|Q00078|KPC1_ASPNG Protein kinase C-like OS=Aspergillus niger GN=pkcA PE=3 SV=1
Length = 1096
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 4 EGYFNVESEFCSKCGTILPLFDFKGDVKCYVC 35
EG+ N+ + +C CG +LP F K +C C
Sbjct: 531 EGFSNISANWCCHCGYLLP-FGRKNAKRCTEC 561
>sp|Q17XE2|SECA_HELAH Protein translocase subunit SecA OS=Helicobacter acinonychis
(strain Sheeba) GN=secA PE=3 SV=2
Length = 865
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 60 KGHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTE 94
K +NLFL + E+IK E F+ ++ E ++D ++
Sbjct: 761 KESYNLFLELIEDIKVEAIKTFSKIQFENEQDSSD 795
>sp|P75164|Y633_MYCPN Uncharacterized protein MPN_633 OS=Mycoplasma pneumoniae (strain
ATCC 29342 / M129) GN=MPN_633 PE=4 SV=1
Length = 247
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 8 NVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFL 67
NV+ F S GT P+ K +K E + + G DIL K + + +
Sbjct: 100 NVKVSFTSSEGTFTPVERMKEGMKDGTKTIQITVDETKKIDKGTDILISKISRSDYEKAI 159
Query: 68 AVFEEIKAEY 77
A+F E++ Y
Sbjct: 160 AIFLELRTGY 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,143,725
Number of Sequences: 539616
Number of extensions: 2011066
Number of successful extensions: 4633
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4574
Number of HSP's gapped (non-prelim): 59
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)