Query psy4748
Match_columns 136
No_of_seqs 127 out of 743
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 16:37:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_I DNA-directed RNA polyme 100.0 1.5E-33 5.3E-38 201.9 8.0 99 10-136 3-106 (113)
2 1twf_I B12.6, DNA-directed RNA 100.0 3.9E-33 1.3E-37 202.2 8.9 98 9-136 2-106 (122)
3 3qt1_I DNA-directed RNA polyme 100.0 3.5E-33 1.2E-37 205.5 3.1 98 9-136 22-126 (133)
4 1tfi_A Transcriptional elongat 99.8 8.2E-21 2.8E-25 118.2 4.6 37 100-136 7-43 (50)
5 1qyp_A RNA polymerase II; tran 99.8 3E-20 1E-24 117.9 5.8 43 94-136 7-49 (57)
6 3po3_S Transcription elongatio 99.6 2.1E-16 7E-21 120.8 2.7 37 100-136 135-171 (178)
7 1pqv_S STP-alpha, transcriptio 99.5 1.3E-14 4.3E-19 118.9 4.4 36 101-136 267-302 (309)
8 2k4x_A 30S ribosomal protein S 98.1 2.7E-06 9.2E-11 53.3 3.2 37 5-41 12-48 (55)
9 3j20_Y 30S ribosomal protein S 97.3 0.00014 4.7E-09 44.5 2.4 36 5-40 13-48 (50)
10 2fiy_A Protein FDHE homolog; F 96.5 0.004 1.4E-07 50.8 5.6 32 10-41 181-220 (309)
11 6rxn_A Rubredoxin; electron tr 94.9 0.021 7.2E-07 34.2 2.9 15 102-116 30-44 (46)
12 1dl6_A Transcription factor II 94.8 0.032 1.1E-06 34.7 3.8 39 2-41 3-42 (58)
13 1yk4_A Rubredoxin, RD; electro 94.7 0.033 1.1E-06 34.1 3.6 17 102-118 35-51 (52)
14 2jr6_A UPF0434 protein NMA0874 94.6 0.026 8.9E-07 36.4 3.0 42 8-49 5-46 (68)
15 1pft_A TFIIB, PFTFIIBN; N-term 94.5 0.023 8E-07 33.8 2.5 31 11-41 5-36 (50)
16 2v3b_B Rubredoxin 2, rubredoxi 94.5 0.035 1.2E-06 34.3 3.3 17 102-118 36-52 (55)
17 2kn9_A Rubredoxin; metalloprot 94.5 0.045 1.5E-06 36.5 4.0 18 102-119 60-77 (81)
18 2pk7_A Uncharacterized protein 94.3 0.029 9.9E-07 36.2 2.7 41 9-49 6-46 (69)
19 2js4_A UPF0434 protein BB2007; 94.1 0.026 8.9E-07 36.5 2.3 42 8-49 5-46 (70)
20 1gh9_A 8.3 kDa protein (gene M 94.1 0.023 7.9E-07 37.0 2.0 30 12-43 5-34 (71)
21 4rxn_A Rubredoxin; electron tr 94.0 0.046 1.6E-06 33.8 3.1 17 102-118 36-52 (54)
22 1e8j_A Rubredoxin; iron-sulfur 94.0 0.035 1.2E-06 34.0 2.5 15 102-116 36-50 (52)
23 2hf1_A Tetraacyldisaccharide-1 94.0 0.026 8.8E-07 36.4 2.0 41 9-49 6-46 (68)
24 1dx8_A Rubredoxin; electron tr 93.9 0.041 1.4E-06 35.6 2.9 17 102-118 40-56 (70)
25 2jny_A Uncharacterized BCR; st 93.9 0.043 1.5E-06 35.2 2.9 43 7-49 6-48 (67)
26 1s24_A Rubredoxin 2; electron 93.5 0.049 1.7E-06 36.8 2.8 17 102-118 68-84 (87)
27 1vq8_Z 50S ribosomal protein L 92.3 0.052 1.8E-06 36.3 1.5 31 11-41 27-57 (83)
28 3a43_A HYPD, hydrogenase nicke 92.0 0.14 4.6E-06 36.9 3.6 16 27-42 68-83 (139)
29 2ct7_A Ring finger protein 31; 91.9 0.11 3.7E-06 34.3 2.8 33 10-42 24-56 (86)
30 3cng_A Nudix hydrolase; struct 91.9 0.08 2.7E-06 38.7 2.4 30 10-39 2-35 (189)
31 3j21_g 50S ribosomal protein L 91.0 0.048 1.6E-06 33.3 0.3 26 10-39 13-38 (51)
32 2kdx_A HYPA, hydrogenase/ureas 91.0 0.19 6.4E-06 34.9 3.4 21 21-41 65-85 (119)
33 1vk6_A NADH pyrophosphatase; 1 90.5 0.1 3.5E-06 41.2 1.8 34 7-40 103-136 (269)
34 1lko_A Rubrerythrin all-iron(I 89.8 0.12 4E-06 39.0 1.6 14 104-117 173-186 (191)
35 2fnf_X Putative RAS effector N 89.5 0.27 9.3E-06 31.5 2.9 30 8-41 32-61 (72)
36 3pwf_A Rubrerythrin; non heme 89.4 0.18 6.2E-06 37.4 2.3 14 104-117 155-168 (170)
37 3m7n_A Putative uncharacterize 88.7 0.25 8.6E-06 36.7 2.7 31 10-42 139-169 (179)
38 2kpi_A Uncharacterized protein 88.2 0.39 1.3E-05 29.5 2.9 41 8-50 7-49 (56)
39 1rfh_A RAS association (ralgds 88.0 0.3 1E-05 30.0 2.3 30 8-41 19-48 (59)
40 2con_A RUH-035 protein, NIN on 86.8 0.23 7.8E-06 32.9 1.3 13 8-20 27-39 (79)
41 1yuz_A Nigerythrin; rubrythrin 86.5 0.3 1E-05 37.1 2.0 14 103-116 187-200 (202)
42 3iz5_m 60S ribosomal protein L 86.2 0.36 1.2E-05 32.8 2.0 32 10-41 35-66 (92)
43 3jyw_9 60S ribosomal protein L 85.3 0.4 1.4E-05 31.2 1.8 32 10-41 25-56 (72)
44 3j21_i 50S ribosomal protein L 85.0 0.42 1.4E-05 31.9 1.9 31 11-41 35-65 (83)
45 3cc2_Z 50S ribosomal protein L 84.2 0.35 1.2E-05 34.2 1.3 32 10-41 59-90 (116)
46 1x0t_A Ribonuclease P protein 83.8 0.61 2.1E-05 32.7 2.4 31 11-41 65-106 (120)
47 3izc_m 60S ribosomal protein R 83.7 0.55 1.9E-05 31.9 2.1 32 10-41 35-66 (92)
48 2akl_A PHNA-like protein PA012 83.4 0.74 2.5E-05 33.3 2.7 31 10-41 26-56 (138)
49 2k3r_A Ribonuclease P protein 81.9 0.68 2.3E-05 32.7 2.0 31 11-41 60-101 (123)
50 1ffk_W Ribosomal protein L37AE 81.8 0.64 2.2E-05 30.2 1.7 33 9-41 25-57 (73)
51 1twf_L ABC10-alpha, DNA-direct 81.0 0.4 1.4E-05 30.9 0.5 27 12-39 29-55 (70)
52 1faq_A RAF-1; transferase, ser 80.4 0.93 3.2E-05 26.5 2.0 27 10-41 13-39 (52)
53 3k1f_M Transcription initiatio 79.7 0.78 2.7E-05 35.0 1.8 32 10-41 20-54 (197)
54 4a17_Y RPL37A, 60S ribosomal p 79.7 0.54 1.8E-05 32.6 0.8 31 11-41 36-66 (103)
55 1k81_A EIF-2-beta, probable tr 79.6 2.5 8.6E-05 23.5 3.5 26 104-136 2-27 (36)
56 4bbr_M Transcription initiatio 77.0 0.92 3.2E-05 36.9 1.6 30 12-41 22-54 (345)
57 1ptq_A Protein kinase C delta 76.4 2.6 8.9E-05 24.2 3.1 32 9-41 9-40 (50)
58 2k5r_A Uncharacterized protein 75.2 1.4 4.8E-05 30.1 1.9 43 6-48 3-72 (97)
59 3h0g_L DNA-directed RNA polyme 75.0 1.2 4.2E-05 28.1 1.5 31 11-42 21-51 (63)
60 2a20_A Regulating synaptic mem 74.9 0.3 1E-05 30.8 -1.4 28 10-37 32-59 (62)
61 2jmo_A Parkin; IBR, E3 ligase, 74.3 2 6.9E-05 27.7 2.5 32 10-41 24-62 (80)
62 1qxf_A GR2, 30S ribosomal prot 74.3 0.76 2.6E-05 29.4 0.3 20 101-120 6-25 (66)
63 3v2d_5 50S ribosomal protein L 74.2 0.6 2.1E-05 29.2 -0.1 26 10-40 29-54 (60)
64 3j20_W 30S ribosomal protein S 73.7 0.82 2.8E-05 29.0 0.4 22 99-120 12-33 (63)
65 2zjr_Z 50S ribosomal protein L 72.5 0.94 3.2E-05 28.2 0.5 27 10-41 29-55 (60)
66 3k7a_M Transcription initiatio 72.1 1.6 5.5E-05 35.3 1.9 29 12-40 22-53 (345)
67 3u5c_b RP61, YS20, 40S ribosom 69.0 1.5 5.3E-05 29.1 0.9 26 96-121 28-53 (82)
68 2xzm_9 RPS31E; ribosome, trans 67.1 2.1 7.2E-05 32.4 1.5 35 7-41 109-143 (189)
69 4esj_A Type-2 restriction enzy 66.8 3.7 0.00013 32.5 2.8 33 10-42 33-69 (257)
70 2jrp_A Putative cytoplasmic pr 66.5 5.5 0.00019 26.3 3.2 28 12-41 3-30 (81)
71 1wii_A Hypothetical UPF0222 pr 66.3 2.8 9.7E-05 27.8 1.8 29 13-41 25-59 (85)
72 1y8f_A UNC-13 homolog A, MUNC1 66.1 4.9 0.00017 24.7 2.8 31 10-41 23-53 (66)
73 3uej_A NPKC-delta, protein kin 64.7 6.4 0.00022 24.0 3.2 32 9-41 18-49 (65)
74 2enz_A NPKC-theta, protein kin 64.6 5.3 0.00018 24.4 2.8 31 10-41 22-52 (65)
75 2eli_A Protein kinase C alpha 62.9 7 0.00024 25.3 3.3 31 10-41 27-57 (85)
76 2xzm_6 RPS27E; ribosome, trans 62.5 1.6 5.6E-05 28.9 0.1 25 96-120 26-50 (81)
77 2yqq_A Zinc finger HIT domain- 59.8 8.9 0.00031 23.5 3.1 32 3-41 4-35 (56)
78 2ayj_A 50S ribosomal protein L 59.7 3.8 0.00013 25.3 1.4 27 8-38 16-42 (56)
79 1kbe_A Kinase suppressor of RA 59.3 5.2 0.00018 23.7 1.9 25 12-41 15-39 (49)
80 2yuu_A NPKC-delta, protein kin 59.0 8.6 0.00029 24.6 3.1 32 9-41 26-57 (83)
81 1dxg_A Desulforedoxin; non-hem 58.6 3 0.0001 23.0 0.7 23 10-32 5-28 (36)
82 4b6d_A RAC GTPase-activating p 57.2 4.5 0.00015 24.9 1.4 29 11-41 19-47 (61)
83 2xzm_6 RPS27E; ribosome, trans 56.7 5.6 0.00019 26.3 1.9 29 13-41 34-63 (81)
84 3iz6_X 40S ribosomal protein S 56.2 2.4 8.2E-05 28.4 0.0 24 97-120 31-54 (86)
85 1wd2_A Ariadne-1 protein homol 55.5 4.9 0.00017 24.6 1.4 32 9-40 4-37 (60)
86 2row_A RHO-associated protein 55.2 6.7 0.00023 25.8 2.1 32 10-41 34-66 (84)
87 2enn_A NPKC-theta, protein kin 54.9 7.2 0.00025 24.7 2.2 31 10-41 33-63 (77)
88 2zkr_2 60S ribosomal protein L 53.7 4.9 0.00017 27.4 1.3 28 10-40 15-42 (97)
89 3ga8_A HTH-type transcriptiona 52.6 16 0.00054 23.0 3.6 13 103-115 3-15 (78)
90 3irb_A Uncharacterized protein 51.7 5.8 0.0002 28.3 1.5 24 12-39 48-71 (145)
91 2kao_A Methionine-R-sulfoxide 51.4 14 0.00048 26.2 3.4 19 98-116 64-82 (124)
92 2kv1_A Methionine-R-sulfoxide 50.1 14 0.00048 26.2 3.2 31 11-41 1-32 (124)
93 1nui_A DNA primase/helicase; z 49.1 7.6 0.00026 29.5 1.9 28 11-39 14-43 (255)
94 1vd4_A Transcription initiatio 46.0 9.7 0.00033 22.1 1.6 31 12-42 15-52 (62)
95 2jne_A Hypothetical protein YF 46.0 13 0.00045 25.4 2.5 28 12-41 33-60 (101)
96 3fac_A Putative uncharacterize 45.0 4.8 0.00016 27.3 0.1 15 10-24 66-80 (118)
97 4esj_A Type-2 restriction enzy 44.5 9.3 0.00032 30.2 1.7 29 102-136 34-62 (257)
98 2db6_A SH3 and cysteine rich d 43.2 4.4 0.00015 25.6 -0.3 31 10-41 27-57 (74)
99 2gnr_A Conserved hypothetical 42.3 9.9 0.00034 27.2 1.5 24 11-38 47-70 (145)
100 2vrw_B P95VAV, VAV1, proto-onc 41.1 17 0.00058 29.2 2.9 31 10-41 356-386 (406)
101 3u50_C Telomerase-associated p 40.4 12 0.00041 27.7 1.7 26 12-38 43-68 (172)
102 2g2k_A EIF-5, eukaryotic trans 40.1 25 0.00086 26.1 3.4 28 103-136 97-125 (170)
103 2k1p_A Zinc finger RAN-binding 39.5 17 0.00059 19.5 1.9 23 13-39 8-30 (33)
104 4ayb_P DNA-directed RNA polyme 36.6 16 0.00054 21.8 1.5 33 10-42 2-36 (48)
105 2i5o_A DNA polymerase ETA; zin 35.2 9.8 0.00033 21.6 0.4 13 29-41 9-21 (39)
106 2agh_C Zinc finger protein HRX 34.7 13 0.00045 19.8 0.8 8 16-23 2-9 (31)
107 3cxl_A N-chimerin; SH2, RHO-GA 34.3 29 0.00098 28.8 3.3 31 10-41 219-249 (463)
108 2k2d_A Ring finger and CHY zin 34.0 10 0.00035 24.6 0.4 31 10-40 36-66 (79)
109 2e9h_A EIF-5, eukaryotic trans 33.8 35 0.0012 25.0 3.3 29 103-136 104-132 (157)
110 3lqh_A Histone-lysine N-methyl 33.6 29 0.001 25.7 2.9 30 12-41 3-33 (183)
111 3na7_A HP0958; flagellar bioge 33.5 12 0.00043 28.7 0.9 31 12-42 199-235 (256)
112 3qqc_A DNA-directed RNA polyme 33.0 21 0.00072 30.0 2.2 30 10-39 4-33 (436)
113 2d74_B Translation initiation 31.7 13 0.00046 26.9 0.7 37 7-43 100-139 (148)
114 1l8d_A DNA double-strand break 31.7 11 0.00039 25.0 0.3 11 13-23 49-59 (112)
115 1bbo_A Human enhancer-binding 31.5 17 0.00058 19.9 1.0 29 13-41 3-41 (57)
116 3uk3_C Zinc finger protein 217 31.1 17 0.0006 19.8 1.0 30 12-41 5-44 (57)
117 1vq8_1 50S ribosomal protein L 30.9 24 0.00081 21.7 1.7 24 11-37 17-40 (57)
118 3f2b_A DNA-directed DNA polyme 30.7 32 0.0011 32.2 3.2 15 28-42 501-515 (1041)
119 1x6m_A GFA, glutathione-depend 30.0 12 0.00039 27.9 0.1 15 10-24 97-111 (196)
120 2f9y_B Acetyl-coenzyme A carbo 29.7 7.8 0.00027 31.0 -0.9 31 11-41 24-55 (304)
121 3j21_e 50S ribosomal protein L 29.7 31 0.0011 21.5 2.1 26 10-38 16-41 (62)
122 2adr_A ADR1; transcription reg 29.2 20 0.00068 19.9 1.1 29 13-41 4-42 (60)
123 3e0o_A Peptide methionine sulf 28.9 45 0.0015 24.1 3.1 19 98-116 86-104 (144)
124 2jox_A Churchill protein; zinc 28.2 52 0.0018 22.5 3.2 13 101-113 56-68 (106)
125 3hcj_A MSRB, peptide methionin 27.3 41 0.0014 24.6 2.7 20 97-116 94-113 (154)
126 2k8d_A Peptide methionine sulf 27.2 51 0.0017 24.0 3.2 20 98-117 106-125 (151)
127 2yrc_A Protein transport prote 26.4 64 0.0022 19.5 3.1 34 9-42 7-46 (59)
128 3o9x_A Uncharacterized HTH-typ 26.3 22 0.00075 23.8 1.0 30 12-41 3-48 (133)
129 2f9i_B Acetyl-coenzyme A carbo 26.2 7.1 0.00024 31.0 -1.8 30 11-40 30-60 (285)
130 3cxk_A Methionine-R-sulfoxide 25.3 47 0.0016 24.5 2.7 19 98-116 118-136 (164)
131 2lk0_A RNA-binding protein 5; 25.1 31 0.0011 18.3 1.3 10 14-23 8-17 (32)
132 1zfo_A LAsp-1; LIM domain, zin 24.6 26 0.00088 18.3 0.9 11 101-111 2-12 (31)
133 2qkd_A Zinc finger protein ZPR 24.3 25 0.00084 29.5 1.1 28 13-40 222-260 (404)
134 2lce_A B-cell lymphoma 6 prote 24.2 28 0.00094 20.3 1.1 32 10-41 16-57 (74)
135 1we9_A PHD finger family prote 23.4 69 0.0023 18.9 2.9 30 10-41 5-34 (64)
136 1l1o_C Replication protein A 7 23.2 40 0.0014 24.5 2.0 29 12-41 44-74 (181)
137 3bvo_A CO-chaperone protein HS 22.4 27 0.00094 26.2 1.0 31 10-41 9-39 (207)
138 1vzi_A Desulfoferrodoxin; ferr 22.4 25 0.00086 24.5 0.7 30 10-41 6-36 (126)
139 3r8s_0 50S ribosomal protein L 22.2 17 0.00058 22.0 -0.2 13 11-23 27-39 (56)
140 2nn6_I 3'-5' exoribonuclease C 22.2 63 0.0022 24.1 3.0 30 11-42 169-198 (209)
141 2cu8_A Cysteine-rich protein 2 21.9 53 0.0018 19.7 2.2 37 4-40 2-47 (76)
142 1x6e_A Zinc finger protein 24; 21.0 29 0.00098 20.2 0.7 31 11-41 14-54 (72)
143 1nee_A EIF-2-beta, probable tr 21.0 22 0.00076 25.4 0.2 27 103-136 103-129 (138)
144 2jr7_A DPH3 homolog; DESR1, CS 20.9 28 0.00097 23.1 0.7 29 12-41 24-57 (89)
145 3pfq_A PKC-B, PKC-beta, protei 20.7 61 0.0021 27.9 3.0 31 10-41 112-142 (674)
146 3hcg_A Peptide methionine sulf 20.2 48 0.0016 24.0 1.8 19 98-116 88-106 (146)
147 2lv2_A Insulinoma-associated p 20.2 29 0.00099 22.0 0.6 30 12-41 29-68 (85)
148 3q87_A Putative uncharacterize 20.0 37 0.0012 23.9 1.2 17 28-44 98-114 (125)
No 1
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-33 Score=201.90 Aligned_cols=99 Identities=19% Similarity=0.422 Sum_probs=78.1
Q ss_pred cccccccCCCccccCCC----CCeEEcCCCCCceecCCCCCCcCCCchhhhhcccccchhhHHHHhhheeeEeEeeccee
Q psy4748 10 ESEFCSKCGTILPLFDF----KGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEEIKAEYTIHFNTVE 85 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~----~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e 85 (136)
+|.|||+|||||+++++ .+.++|++|+|.+++++. .+|+ ..+....++
T Consensus 3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~~-----------------------~v~~-----~~~~~~~~e 54 (113)
T 3h0g_I 3 NFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATS-----------------------KVYR-----HELQSSNVE 54 (113)
T ss_dssp CCCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSCS-----------------------EEEE-----CCCCSCSCT
T ss_pred cceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCCC-----------------------eEEE-----EEEeccccc
Confidence 58999999999999965 358999999999998531 1221 111112223
Q ss_pred ec-cccccccccCCCceeccccccCCCceEEEEeeccccCCCceEEEEecCC
Q psy4748 86 KE-KQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136 (136)
Q Consensus 86 ~~-~~~~~~~~~~~~~~~~~CpkCg~~~a~f~~~Q~RSADEg~TvFY~C~~C 136 (136)
.+ ++.+...++++|+++..||+|||++|+|||+|+||||||||+||+|++|
T Consensus 55 ~~~v~~~~~~~~tlp~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C 106 (113)
T 3h0g_I 55 NTTVSHDASTDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHC 106 (113)
T ss_dssp TCTTCTTSTTCSSSCBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSS
T ss_pred ccceeccccccccCCCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCC
Confidence 22 4555667899999999999999999999999999999999999999988
No 2
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=100.00 E-value=3.9e-33 Score=202.17 Aligned_cols=98 Identities=20% Similarity=0.386 Sum_probs=77.5
Q ss_pred ccccccccCCCccccCCC----CCeEEcCCCCCceecCCCCCCcCCCchhhhhcccccchhhHHHHhhheeeEeEeec--
Q psy4748 9 VESEFCSKCGTILPLFDF----KGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEEIKAEYTIHFN-- 82 (136)
Q Consensus 9 ~~~~FCp~CgnlL~~~~~----~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-- 82 (136)
++|.|||+|||||+++++ .+.|.|++|||.+++.. .++++..+.
T Consensus 2 ~~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~~------------------------------~~v~~~~~~~~ 51 (122)
T 1twf_I 2 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGS------------------------------PLVYRHELITN 51 (122)
T ss_dssp CCCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECSC------------------------------SEEEEEESSCC
T ss_pred CCCCcccccCccCcccccCcCCCCEEECCcCCCeeecCc------------------------------cEEEEEeeccc
Confidence 478999999999999854 46899999999998743 111222222
Q ss_pred ceeec-cccccccccCCCceeccccccCCCceEEEEeeccccCCCceEEEEecCC
Q psy4748 83 TVEKE-KQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136 (136)
Q Consensus 83 ~~e~~-~~~~~~~~~~~~~~~~~CpkCg~~~a~f~~~Q~RSADEg~TvFY~C~~C 136 (136)
.++.+ ++.++++++++|+++..||+|||++|+|||+|+||||||||+||+|++|
T Consensus 52 ~~e~~~v~~~~~~~~t~p~t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C 106 (122)
T 1twf_I 52 IGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSC 106 (122)
T ss_dssp TTSSTTCCTTGGGCTTSCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTT
T ss_pred ccccccccccccccccccccCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCC
Confidence 12222 4444556789999999999999999999999999999999999999988
No 3
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.5e-33 Score=205.50 Aligned_cols=98 Identities=26% Similarity=0.455 Sum_probs=31.5
Q ss_pred ccccccccCCCccccCCC----CCeEEcCCCCCceecCCCCCCcCCCchhhhhcccccchhhHHHHhhheeeEeEeecc-
Q psy4748 9 VESEFCSKCGTILPLFDF----KGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLFLAVFEEIKAEYTIHFNT- 83 (136)
Q Consensus 9 ~~~~FCp~CgnlL~~~~~----~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~- 83 (136)
.+|.|||+|||||+|+++ .+.|+|++|||++++++. ++++..+..
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~~~------------------------------~v~r~~~~~~ 71 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSP------------------------------LVYRHELITN 71 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCSCS------------------------------EEEECCC---
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcCCc------------------------------eEEEEEeecc
Confidence 468999999999999965 358999999999988531 112211111
Q ss_pred -eeec-cccccccccCCCceeccccccCCCceEEEEeeccccCCCceEEEEecCC
Q psy4748 84 -VEKE-KQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136 (136)
Q Consensus 84 -~e~~-~~~~~~~~~~~~~~~~~CpkCg~~~a~f~~~Q~RSADEg~TvFY~C~~C 136 (136)
.+.. ++.+...++++|++++.||+|||++|+|||+|+||||||||+||+|++|
T Consensus 72 ~~e~~~vv~dv~~dptlp~t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C 126 (133)
T 3qt1_I 72 IGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNC 126 (133)
T ss_dssp -------------------------------------------------------
T ss_pred ccccceeEeeccccccCCcccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCC
Confidence 1111 2334456788998899999999999999999999999999999999988
No 4
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=99.82 E-value=8.2e-21 Score=118.18 Aligned_cols=37 Identities=35% Similarity=0.709 Sum_probs=35.0
Q ss_pred ceeccccccCCCceEEEEeeccccCCCceEEEEecCC
Q psy4748 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136 (136)
Q Consensus 100 ~~~~~CpkCg~~~a~f~~~Q~RSADEg~TvFY~C~~C 136 (136)
+.+..||+|||++|+|||+|+||||||||+||+|++|
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~C 43 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNEC 43 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSS
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCC
Confidence 4567999999999999999999999999999999988
No 5
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=99.81 E-value=3e-20 Score=117.89 Aligned_cols=43 Identities=40% Similarity=0.819 Sum_probs=40.4
Q ss_pred cccCCCceeccccccCCCceEEEEeeccccCCCceEEEEecCC
Q psy4748 94 EIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136 (136)
Q Consensus 94 ~~~~~~~~~~~CpkCg~~~a~f~~~Q~RSADEg~TvFY~C~~C 136 (136)
+++++|++...||+|||++|+|+|+|+||||||||+||+|++|
T Consensus 7 ~~~~~~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~C 49 (57)
T 1qyp_A 7 DLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKC 49 (57)
T ss_dssp CCSSSCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSS
T ss_pred hhhcCCceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCC
Confidence 4677888899999999999999999999999999999999998
No 6
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=99.60 E-value=2.1e-16 Score=120.84 Aligned_cols=37 Identities=38% Similarity=0.670 Sum_probs=35.1
Q ss_pred ceeccccccCCCceEEEEeeccccCCCceEEEEecCC
Q psy4748 100 IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136 (136)
Q Consensus 100 ~~~~~CpkCg~~~a~f~~~Q~RSADEg~TvFY~C~~C 136 (136)
+....||+|||++|+|||+|+||||||||+||+|++|
T Consensus 135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C 171 (178)
T 3po3_S 135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEAC 171 (178)
T ss_dssp BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTT
T ss_pred cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCC
Confidence 4567999999999999999999999999999999998
No 7
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=99.49 E-value=1.3e-14 Score=118.94 Aligned_cols=36 Identities=44% Similarity=0.774 Sum_probs=34.2
Q ss_pred eeccccccCCCceEEEEeeccccCCCceEEEEecCC
Q psy4748 101 VERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136 (136)
Q Consensus 101 ~~~~CpkCg~~~a~f~~~Q~RSADEg~TvFY~C~~C 136 (136)
....||+|||++++|||+|+||||||||+||+|.+|
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~C 302 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEAC 302 (309)
T ss_pred ccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCC
Confidence 356899999999999999999999999999999998
No 8
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=98.05 E-value=2.7e-06 Score=53.29 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=29.5
Q ss_pred CccCccccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 5 GYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 5 ~~~~~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
+.....+.|||.||+++......+++.|..|+|.+-.
T Consensus 12 gki~~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~~~ 48 (55)
T 2k4x_A 12 GKLVRKHRFCPRCGPGVFLAEHADRYSCGRCGYTEFK 48 (55)
T ss_dssp CCCCCSSCCCTTTTTTCCCEECSSEEECTTTCCCEEC
T ss_pred CEEEEccccCcCCCCceeEeccCCEEECCCCCCEEEe
Confidence 4445568999999998876655679999999999743
No 9
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.26 E-value=0.00014 Score=44.54 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=26.3
Q ss_pred CccCccccccccCCCccccCCCCCeEEcCCCCCcee
Q psy4748 5 GYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYG 40 (136)
Q Consensus 5 ~~~~~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~ 40 (136)
+.+.....|||.||+-+......+++.|..||+.+-
T Consensus 13 ~kv~~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~~ 48 (50)
T 3j20_Y 13 GKVIRKNKFCPRCGPGVFMADHGDRWACGKCGYTEW 48 (50)
T ss_dssp SCEECSSEECSSSCSSCEEEECSSEEECSSSCCEEE
T ss_pred CEEEEecccCCCCCCceEEecCCCeEECCCCCCEEE
Confidence 445556889999999333333457999999999864
No 10
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=96.46 E-value=0.004 Score=50.80 Aligned_cols=32 Identities=16% Similarity=0.389 Sum_probs=23.4
Q ss_pred cccccccCCCccccC-----C--CC-CeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLF-----D--FK-GDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~-----~--~~-~~~~C~~C~~~~~~ 41 (136)
...+||.||+.=... . ++ -++.|..|++.+..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~ 220 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY 220 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee
Confidence 467999999864332 1 22 27899999999987
No 11
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=94.87 E-value=0.021 Score=34.20 Aligned_cols=15 Identities=13% Similarity=0.465 Sum_probs=12.7
Q ss_pred eccccccCCCceEEE
Q psy4748 102 ERKCKRCNNDTMSYA 116 (136)
Q Consensus 102 ~~~CpkCg~~~a~f~ 116 (136)
++.||.||+.+..|-
T Consensus 30 dw~CP~Cg~~k~~F~ 44 (46)
T 6rxn_A 30 DWCCPVCGVSKDQFS 44 (46)
T ss_dssp TCBCTTTCCBGGGEE
T ss_pred CCcCcCCCCcHHHcE
Confidence 579999999988774
No 12
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=94.82 E-value=0.032 Score=34.68 Aligned_cols=39 Identities=26% Similarity=0.183 Sum_probs=27.4
Q ss_pred CCCCccCccccccccCCC-ccccCCCCCeEEcCCCCCceec
Q psy4748 2 TSEGYFNVESEFCSKCGT-ILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 2 ~~~~~~~~~~~FCp~Cgn-lL~~~~~~~~~~C~~C~~~~~~ 41 (136)
||.+.|...+ -||+||+ -|......+.++|..||.....
T Consensus 3 ~~~~~ll~~~-~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 3 TSRLDALPRV-TCPNHPDAILVEDYRAGDMICPECGLVVGD 42 (58)
T ss_dssp TCSCCCCSCC-SBTTBSSSCCEECSSSCCEECTTTCCEECC
T ss_pred cchhhccccc-cCcCCCCCceeEeCCCCeEEeCCCCCEEec
Confidence 4556665443 6999997 4444444578999999998764
No 13
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=94.71 E-value=0.033 Score=34.07 Aligned_cols=17 Identities=12% Similarity=0.503 Sum_probs=14.2
Q ss_pred eccccccCCCceEEEEe
Q psy4748 102 ERKCKRCNNDTMSYATL 118 (136)
Q Consensus 102 ~~~CpkCg~~~a~f~~~ 118 (136)
++.||.||..+..|..+
T Consensus 35 dw~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 35 DWVCPLCGAPKSEFERI 51 (52)
T ss_dssp TCBCTTTCCBGGGEEEE
T ss_pred CCcCCCCCCCHHHcEEC
Confidence 68999999999888653
No 14
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=94.56 E-value=0.026 Score=36.36 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=34.8
Q ss_pred CccccccccCCCccccCCCCCeEEcCCCCCceecCCCCCCcC
Q psy4748 8 NVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLL 49 (136)
Q Consensus 8 ~~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~~~~~~~~~ 49 (136)
-.++.-||.|+.=|......+.++|+.|+..+++.++-|.++
T Consensus 5 LL~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL 46 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPYML 46 (68)
T ss_dssp SSCCCBCSSSCCBCEEETTTTEEEETTTTEEEEEETTEECCC
T ss_pred HhhheECCCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeC
Confidence 356789999999998876668999999999999987655554
No 15
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=94.50 E-value=0.023 Score=33.83 Aligned_cols=31 Identities=19% Similarity=0.449 Sum_probs=24.5
Q ss_pred ccccccCCC-ccccCCCCCeEEcCCCCCceec
Q psy4748 11 SEFCSKCGT-ILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 11 ~~FCp~Cgn-lL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...||.||. -|......+.++|..||...+.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence 457999998 6666555678999999997764
No 16
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=94.48 E-value=0.035 Score=34.34 Aligned_cols=17 Identities=12% Similarity=0.593 Sum_probs=14.7
Q ss_pred eccccccCCCceEEEEe
Q psy4748 102 ERKCKRCNNDTMSYATL 118 (136)
Q Consensus 102 ~~~CpkCg~~~a~f~~~ 118 (136)
++.||.||..+..|..+
T Consensus 36 dw~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 36 DWVCPDCGVGKIDFEMI 52 (55)
T ss_dssp TCCCTTTCCCGGGEEEC
T ss_pred CCcCCCCCCCHHHceec
Confidence 68999999999988764
No 17
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=94.47 E-value=0.045 Score=36.54 Aligned_cols=18 Identities=11% Similarity=0.562 Sum_probs=15.7
Q ss_pred eccccccCCCceEEEEee
Q psy4748 102 ERKCKRCNNDTMSYATLQ 119 (136)
Q Consensus 102 ~~~CpkCg~~~a~f~~~Q 119 (136)
++.||.||..+..|..+.
T Consensus 60 dW~CPvCga~K~~F~~i~ 77 (81)
T 2kn9_A 60 DWSCPDCGAAKSDFEMVE 77 (81)
T ss_dssp TCCCTTTCCCGGGEEEEC
T ss_pred CCcCCCCCCCHHHcEEcc
Confidence 689999999999997764
No 18
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=94.27 E-value=0.029 Score=36.24 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=33.8
Q ss_pred ccccccccCCCccccCCCCCeEEcCCCCCceecCCCCCCcC
Q psy4748 9 VESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLL 49 (136)
Q Consensus 9 ~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~~~~~~~~~ 49 (136)
.++.-||.|+.=|......+.++|+.|+..+++.++-|.++
T Consensus 6 LeiL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL 46 (69)
T 2pk7_A 6 LDILACPICKGPLKLSADKTELISKGAGLAYPIRDGIPVML 46 (69)
T ss_dssp GGTCCCTTTCCCCEECTTSSEEEETTTTEEEEEETTEECCC
T ss_pred HhheeCCCCCCcCeEeCCCCEEEcCCCCcEecCcCCeeeeC
Confidence 46788999999999876678999999999999987544443
No 19
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=94.15 E-value=0.026 Score=36.55 Aligned_cols=42 Identities=14% Similarity=0.407 Sum_probs=34.3
Q ss_pred CccccccccCCCccccCCCCCeEEcCCCCCceecCCCCCCcC
Q psy4748 8 NVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLL 49 (136)
Q Consensus 8 ~~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~~~~~~~~~ 49 (136)
-.++.-||.|+.=|......+.++|+.|+..+++.++-|.++
T Consensus 5 LL~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL 46 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIML 46 (70)
T ss_dssp CCCCCBCTTTCCBEEEETTTTEEEETTTTEEEEEETTEECCC
T ss_pred HhhheECCCCCCcCEEeCCCCEEEcCCCCceecCCCCeeeeC
Confidence 456789999999998876667999999999999977544443
No 20
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=94.09 E-value=0.023 Score=36.99 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=26.3
Q ss_pred cccccCCCccccCCCCCeEEcCCCCCceecCC
Q psy4748 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGTQE 43 (136)
Q Consensus 12 ~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~~~ 43 (136)
.=|| ||++++.+.....-.|+ ||....+..
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEET-TTEEEECCS
T ss_pred EECC-CCCEEEEcCCCcEEECC-CCCeeeece
Confidence 4599 99999999877799999 999998864
No 21
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=94.02 E-value=0.046 Score=33.77 Aligned_cols=17 Identities=12% Similarity=0.433 Sum_probs=14.0
Q ss_pred eccccccCCCceEEEEe
Q psy4748 102 ERKCKRCNNDTMSYATL 118 (136)
Q Consensus 102 ~~~CpkCg~~~a~f~~~ 118 (136)
++.||.||..+..|..+
T Consensus 36 dw~CP~Cg~~K~~F~~~ 52 (54)
T 4rxn_A 36 DWVCPLCGVGKDEFEEV 52 (54)
T ss_dssp TCBCTTTCCBGGGEEEC
T ss_pred CCcCcCCCCcHHHceEc
Confidence 68999999998877543
No 22
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=93.97 E-value=0.035 Score=33.95 Aligned_cols=15 Identities=13% Similarity=0.556 Sum_probs=12.8
Q ss_pred eccccccCCCceEEE
Q psy4748 102 ERKCKRCNNDTMSYA 116 (136)
Q Consensus 102 ~~~CpkCg~~~a~f~ 116 (136)
++.||.||..+..|.
T Consensus 36 dw~CP~Cg~~K~~F~ 50 (52)
T 1e8j_A 36 DWACPVCGASKDAFE 50 (52)
T ss_dssp TCCCSSSCCCTTSCE
T ss_pred CCcCCCCCCcHHHcE
Confidence 689999999987764
No 23
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=93.96 E-value=0.026 Score=36.39 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=33.8
Q ss_pred ccccccccCCCccccCCCCCeEEcCCCCCceecCCCCCCcC
Q psy4748 9 VESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLL 49 (136)
Q Consensus 9 ~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~~~~~~~~~ 49 (136)
.++.-||.|+.=|......+.++|+.|+..+++.++-|.++
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL 46 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMML 46 (68)
T ss_dssp EEECBCTTTCCBCEEETTTTEEEETTTTEEEEEETTEECCC
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeC
Confidence 46778999999998876668999999999999987544443
No 24
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=93.91 E-value=0.041 Score=35.61 Aligned_cols=17 Identities=12% Similarity=0.491 Sum_probs=15.1
Q ss_pred eccccccCCCceEEEEe
Q psy4748 102 ERKCKRCNNDTMSYATL 118 (136)
Q Consensus 102 ~~~CpkCg~~~a~f~~~ 118 (136)
++.||.||..+..|..+
T Consensus 40 dw~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 40 SFMCPACRSPKNQFKSI 56 (70)
T ss_dssp TCBCTTTCCBGGGEEEC
T ss_pred CCcCCCCCCCHHHceEc
Confidence 68999999999988765
No 25
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=93.86 E-value=0.043 Score=35.24 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=35.2
Q ss_pred cCccccccccCCCccccCCCCCeEEcCCCCCceecCCCCCCcC
Q psy4748 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLL 49 (136)
Q Consensus 7 ~~~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~~~~~~~~~ 49 (136)
.-.++.-||.|+.=|......+.++|+.|+..+++.++-|.++
T Consensus 6 ~LLeiL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~dGIPvmL 48 (67)
T 2jny_A 6 QLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLL 48 (67)
T ss_dssp GGTCCCBCTTTCCBCEEETTTTEEEETTTTEEEEEETTEECCC
T ss_pred HHHHHhCCCCCCCcCeEeCCCCEEEcCCCCccccCCCCEeeeC
Confidence 3457789999999998876677999999999999987655554
No 26
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=93.45 E-value=0.049 Score=36.79 Aligned_cols=17 Identities=18% Similarity=0.505 Sum_probs=14.6
Q ss_pred eccccccCCCceEEEEe
Q psy4748 102 ERKCKRCNNDTMSYATL 118 (136)
Q Consensus 102 ~~~CpkCg~~~a~f~~~ 118 (136)
++.||.||..+..|..+
T Consensus 68 dW~CPvCga~K~~F~~i 84 (87)
T 1s24_A 68 DWCCPDCGATKEDYVLY 84 (87)
T ss_dssp TCCCSSSCCCGGGEEEC
T ss_pred CCCCCCCCCCHHHhhhc
Confidence 68999999999888764
No 27
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=92.27 E-value=0.052 Score=36.26 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=25.6
Q ss_pred ccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 11 SEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...||.||.-+......+.|.|+.|++...-
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTG 57 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEecC
Confidence 4589999997766656679999999998765
No 28
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=92.00 E-value=0.14 Score=36.93 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=13.7
Q ss_pred CCeEEcCCCCCceecC
Q psy4748 27 KGDVKCYVCKTSYGTQ 42 (136)
Q Consensus 27 ~~~~~C~~C~~~~~~~ 42 (136)
...+.|+.|||.+...
T Consensus 68 p~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLK 83 (139)
T ss_dssp CCEEEETTTCCEEEGG
T ss_pred CCcEECCCCCCEEecc
Confidence 4689999999999874
No 29
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=91.94 E-value=0.11 Score=34.29 Aligned_cols=33 Identities=12% Similarity=0.354 Sum_probs=25.4
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceecC
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQ 42 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~~ 42 (136)
.+.+||.|++++........+.|..|++..-..
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~ 56 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFCVR 56 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEECSS
T ss_pred CEeECcCCCchheecCCCCceEeCCCCCccccc
Confidence 345799999988776555578999999987654
No 30
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=91.90 E-value=0.08 Score=38.66 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=22.9
Q ss_pred cccccccCCCccccCC-C---CCeEEcCCCCCce
Q psy4748 10 ESEFCSKCGTILPLFD-F---KGDVKCYVCKTSY 39 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~-~---~~~~~C~~C~~~~ 39 (136)
...|||.||+.|.... + .....|..|+...
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~ 35 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCHTIH 35 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEE
T ss_pred CcccCchhCCccccccccCCCCcceECCCCCCcc
Confidence 4689999999998752 2 3578999999544
No 31
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.03 E-value=0.048 Score=33.34 Aligned_cols=26 Identities=31% Similarity=0.710 Sum_probs=20.9
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCce
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSY 39 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~ 39 (136)
...-||.||..+.+ ..+.|+.|||..
T Consensus 13 ~k~iCpkC~a~~~~----gaw~CrKCG~~~ 38 (51)
T 3j21_g 13 KKYVCLRCGATNPW----GAKKCRKCGYKR 38 (51)
T ss_dssp SEEECTTTCCEECT----TCSSCSSSSSCC
T ss_pred CCccCCCCCCcCCC----CceecCCCCCcc
Confidence 45679999998544 588999999983
No 32
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=90.99 E-value=0.19 Score=34.95 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=13.4
Q ss_pred cccCCCCCeEEcCCCCCceec
Q psy4748 21 LPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 21 L~~~~~~~~~~C~~C~~~~~~ 41 (136)
|........+.|+.||+....
T Consensus 65 L~i~~~p~~~~C~~CG~~~e~ 85 (119)
T 2kdx_A 65 LDIVDEKVELECKDCSHVFKP 85 (119)
T ss_dssp EEEEEECCEEECSSSSCEECS
T ss_pred EEEEeccceEEcCCCCCEEeC
Confidence 333333457888888877664
No 33
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=90.46 E-value=0.1 Score=41.18 Aligned_cols=34 Identities=21% Similarity=0.485 Sum_probs=28.3
Q ss_pred cCccccccccCCCccccCCCCCeEEcCCCCCcee
Q psy4748 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYG 40 (136)
Q Consensus 7 ~~~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~ 40 (136)
|.....|||.||.-+..........|..|+....
T Consensus 103 w~~~~~fC~~CG~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 103 FYRSHKYCGYCGHEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHTTSBCTTTCCBEEECSSSSCEEESSSSCEEC
T ss_pred hhhcCCccccCCCcCccCCCceeeeCCCCCCEec
Confidence 3446789999999998876677899999998765
No 34
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=89.84 E-value=0.12 Score=38.95 Aligned_cols=14 Identities=14% Similarity=0.546 Sum_probs=11.9
Q ss_pred cccccCCCceEEEE
Q psy4748 104 KCKRCNNDTMSYAT 117 (136)
Q Consensus 104 ~CpkCg~~~a~f~~ 117 (136)
.||.||+++..|-.
T Consensus 173 ~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 173 LCPACAHPKAHFEL 186 (191)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred CCCCCcCCHHHHHh
Confidence 89999999988743
No 35
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=89.45 E-value=0.27 Score=31.50 Aligned_cols=30 Identities=23% Similarity=0.633 Sum_probs=24.0
Q ss_pred CccccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 8 NVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 8 ~~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
.....||..||++| . ..-+.|..|++....
T Consensus 32 ~~~pt~C~~C~~~l-~---~qG~kC~~C~~~cHk 61 (72)
T 2fnf_X 32 RGGPGWCDLCGREV-L---RQALRCANCKFTCHS 61 (72)
T ss_dssp CSSCCBCTTTSSBC-S---SCCEECTTSSCEECT
T ss_pred CCCCcchhhhhHHH-H---hCcCccCCCCCeech
Confidence 34668999999999 2 346899999998765
No 36
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=89.38 E-value=0.18 Score=37.42 Aligned_cols=14 Identities=14% Similarity=0.503 Sum_probs=11.9
Q ss_pred cccccCCCceEEEE
Q psy4748 104 KCKRCNNDTMSYAT 117 (136)
Q Consensus 104 ~CpkCg~~~a~f~~ 117 (136)
.||-||+++.+|-.
T Consensus 155 ~CP~Cg~~~~~F~~ 168 (170)
T 3pwf_A 155 YCPVCGAPKEKFVV 168 (170)
T ss_dssp BCTTTCCBGGGCEE
T ss_pred CCCCCCCCHHHcee
Confidence 89999999987754
No 37
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=88.68 E-value=0.25 Score=36.71 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=26.1
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceecC
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQ 42 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~~ 42 (136)
-.-.|+.||+.|.+.. ..+.|+.||..+...
T Consensus 139 v~a~~~~~g~~m~~~~--~~~~cp~~g~~e~RK 169 (179)
T 3m7n_A 139 LRALCSNCKTEMVREG--DILKCPECGRVEKRK 169 (179)
T ss_dssp EECBCTTTCCBCEECS--SSEECSSSCCEECCC
T ss_pred EEecccccCCceEECC--CEEECCCCCCEEEEe
Confidence 3458999999998865 699999999998864
No 38
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=88.17 E-value=0.39 Score=29.52 Aligned_cols=41 Identities=27% Similarity=0.478 Sum_probs=32.9
Q ss_pred CccccccccCCCccccCCCCCeEEcC--CCCCceecCCCCCCcCC
Q psy4748 8 NVESEFCSKCGTILPLFDFKGDVKCY--VCKTSYGTQEQQPLLLG 50 (136)
Q Consensus 8 ~~~~~FCp~CgnlL~~~~~~~~~~C~--~C~~~~~~~~~~~~~~~ 50 (136)
-.++.-||.|+.-|...+ +.++|. .|+..+++.++-|.++.
T Consensus 7 lL~iL~CP~c~~~L~~~~--~~L~C~~~~c~~~YPI~dGIPvlL~ 49 (56)
T 2kpi_A 7 LLEILACPACHAPLEERD--AELICTGQDCGLAYPVRDGIPVLLV 49 (56)
T ss_dssp CTTSCCCSSSCSCEEEET--TEEEECSSSCCCEEEEETTEECCCT
T ss_pred HHhheeCCCCCCcceecC--CEEEcCCcCCCcEEeeECCEeeeCH
Confidence 456789999999888865 689999 99999999876555543
No 39
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=87.97 E-value=0.3 Score=29.98 Aligned_cols=30 Identities=23% Similarity=0.633 Sum_probs=23.7
Q ss_pred CccccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 8 NVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 8 ~~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
.....||..||++| . +.-+.|..|++....
T Consensus 19 ~~~pt~C~~C~~~i-~---kqg~kC~~C~~~cH~ 48 (59)
T 1rfh_A 19 RGGPGWCDLCGREV-L---RQALRCANCKFTCHS 48 (59)
T ss_dssp SSCCEECTTTCSEE-C---SCCEECTTTSCEECH
T ss_pred cCCCeEchhcchhh-h---hCccEeCCCCCeEeh
Confidence 34568999999999 3 346899999997654
No 40
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=86.75 E-value=0.23 Score=32.88 Aligned_cols=13 Identities=31% Similarity=0.989 Sum_probs=10.7
Q ss_pred CccccccccCCCc
Q psy4748 8 NVESEFCSKCGTI 20 (136)
Q Consensus 8 ~~~~~FCp~Cgnl 20 (136)
.++..|||.|||=
T Consensus 27 ~~~k~FCp~CGn~ 39 (79)
T 2con_A 27 DMNRVFCGHCGNK 39 (79)
T ss_dssp CSSCCSCSSSCCS
T ss_pred CcccccccccCcc
Confidence 4677899999984
No 41
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=86.54 E-value=0.3 Score=37.12 Aligned_cols=14 Identities=21% Similarity=0.581 Sum_probs=12.0
Q ss_pred ccccccCCCceEEE
Q psy4748 103 RKCKRCNNDTMSYA 116 (136)
Q Consensus 103 ~~CpkCg~~~a~f~ 116 (136)
+.||-||+++.+|.
T Consensus 187 ~~CP~C~~~k~~F~ 200 (202)
T 1yuz_A 187 EKCPICFRPKDTFT 200 (202)
T ss_dssp SBCTTTCCBGGGCE
T ss_pred CCCCCCCCChHHhe
Confidence 78999999988764
No 42
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=86.19 E-value=0.36 Score=32.85 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=24.9
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
.-.+||.||..=.-+...++|.|+.|++...-
T Consensus 35 ~ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~AG 66 (92)
T 3iz5_m 35 SKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAG 66 (92)
T ss_dssp SCBCCTTTCSSCBEEEETTEEECSSSCCEEEC
T ss_pred ccccCcccCCCeeEecCcceEEcCCCCCEEeC
Confidence 34589999998444445689999999998865
No 43
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=85.28 E-value=0.4 Score=31.21 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=24.8
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
....||.||..=.-+...++|.|+.|++...-
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCCCCC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCEEeC
Confidence 34589999988544455689999999998765
No 44
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=84.98 E-value=0.42 Score=31.92 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=24.4
Q ss_pred ccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 11 SEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...||.||..=.-+...++|.|+.|++...-
T Consensus 35 ky~CpfCGk~~vkR~a~GIW~C~kCg~~~AG 65 (83)
T 3j21_i 35 KHTCPVCGRKAVKRISTGIWQCQKCGATFAG 65 (83)
T ss_dssp CBCCSSSCSSCEEEEETTEEEETTTCCEEEC
T ss_pred ccCCCCCCCceeEecCcCeEEcCCCCCEEeC
Confidence 4589999998433345689999999998765
No 45
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=84.22 E-value=0.35 Score=34.22 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=23.9
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
.-.+||.||..=.-+...+.|.|+.|++...-
T Consensus 59 akytCPfCGk~~vKR~avGIW~C~~Cgk~fAG 90 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTG 90 (116)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred cCCcCCCCCCceeEecCceeEECCCCCCEEEC
Confidence 34689999984333334679999999999765
No 46
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=83.85 E-value=0.61 Score=32.73 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=24.9
Q ss_pred ccccccCCCccccCCC-------C----CeEEcCCCCCceec
Q psy4748 11 SEFCSKCGTILPLFDF-------K----GDVKCYVCKTSYGT 41 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~~-------~----~~~~C~~C~~~~~~ 41 (136)
..||..||++|.|-.. + ..+.|-.||+....
T Consensus 65 R~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~ 106 (120)
T 1x0t_A 65 RRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRY 106 (120)
T ss_dssp TSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEE
T ss_pred HHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEE
Confidence 4599999999998643 2 36799999998765
No 47
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=83.72 E-value=0.55 Score=31.91 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=24.6
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
.-..||.||..=.-+...++|.|+.|++...-
T Consensus 35 ~ky~CpfCgk~~vkR~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 35 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp SCCCCSSSCSSCCEEEETTEEECTTTCCEEEC
T ss_pred cCCcCCCCCCceeeecccceEEcCCCCCEEeC
Confidence 34689999987444345689999999998865
No 48
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=83.38 E-value=0.74 Score=33.33 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=26.0
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
++-=||.|++-..... +..|+|+-|++++..
T Consensus 26 ~lP~CP~C~seytYeD-g~l~vCPeC~hEW~~ 56 (138)
T 2akl_A 26 TLPPCPQCNSEYTYED-GALLVCPECAHEWSP 56 (138)
T ss_dssp CSCCCTTTCCCCCEEC-SSSEEETTTTEEECT
T ss_pred cCCCCCCCCCcceEec-CCeEECCccccccCC
Confidence 5678999999888764 468999999999964
No 49
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=81.85 E-value=0.68 Score=32.69 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.8
Q ss_pred ccccccCCCccccCCC-------C----CeEEcCCCCCceec
Q psy4748 11 SEFCSKCGTILPLFDF-------K----GDVKCYVCKTSYGT 41 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~~-------~----~~~~C~~C~~~~~~ 41 (136)
..||..||++|.|-.. + ..+.|-.||+....
T Consensus 60 R~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~ 101 (123)
T 2k3r_A 60 RRYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRY 101 (123)
T ss_dssp TSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred HHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEE
Confidence 4699999999998643 1 36799999988765
No 50
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=81.77 E-value=0.64 Score=30.24 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=24.5
Q ss_pred ccccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 9 VESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 9 ~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
.....||.||..=.-+...++|.|+.|++...-
T Consensus 25 ~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 25 KKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAG 57 (73)
T ss_pred ccCccCCCCCCceeEEEEeEEEECCCCCcEEEC
Confidence 355689999975333334679999999998765
No 51
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=80.97 E-value=0.4 Score=30.89 Aligned_cols=27 Identities=26% Similarity=0.623 Sum_probs=19.9
Q ss_pred cccccCCCccccCCCCCeEEcCCCCCce
Q psy4748 12 EFCSKCGTILPLFDFKGDVKCYVCKTSY 39 (136)
Q Consensus 12 ~FCp~CgnlL~~~~~~~~~~C~~C~~~~ 39 (136)
.-|++||.-..+.. .+.+.|+.||+..
T Consensus 29 Y~C~~CG~~~e~~~-~d~irCp~CG~RI 55 (70)
T 1twf_L 29 YICAECSSKLSLSR-TDAVRCKDCGHRI 55 (70)
T ss_dssp EECSSSCCEECCCT-TSTTCCSSSCCCC
T ss_pred EECCCCCCcceeCC-CCCccCCCCCceE
Confidence 36999999866653 3567899999833
No 52
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=80.37 E-value=0.93 Score=26.51 Aligned_cols=27 Identities=22% Similarity=0.674 Sum_probs=22.7
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...||..||.+|. .-+.|+.|++....
T Consensus 13 ~pt~C~~C~~~l~-----qG~~C~~C~~~~H~ 39 (52)
T 1faq_A 13 KLAFCDICQKFLL-----NGFRCQTCGYKFHE 39 (52)
T ss_dssp SCEECTTSSSEEC-----SEEECTTTTCCBCS
T ss_pred CCcCCCCcccccc-----cCCEeCCCCCeECh
Confidence 4689999999997 37899999987754
No 53
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=79.73 E-value=0.78 Score=34.97 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=23.0
Q ss_pred cccccccCCC---ccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGT---ILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~Cgn---lL~~~~~~~~~~C~~C~~~~~~ 41 (136)
....||+||. -|......+.++|..||.....
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEE 54 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSD 54 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCC
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCC
Confidence 3458999997 2444334579999999998643
No 54
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=79.68 E-value=0.54 Score=32.60 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=24.4
Q ss_pred ccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 11 SEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...||.||..=.-+...++|.|+.|++...-
T Consensus 36 ky~CpfCgk~~vKR~a~GIW~C~kCg~~~AG 66 (103)
T 4a17_Y 36 KYGCPFCGKVAVKRAAVGIWKCKPCKKIIAG 66 (103)
T ss_dssp CEECTTTCCEEEEEEETTEEEETTTTEEEEC
T ss_pred CCCCCCCCCceeeecCcceEEcCCCCCEEeC
Confidence 4589999988444445689999999998865
No 55
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=79.57 E-value=2.5 Score=23.51 Aligned_cols=26 Identities=23% Similarity=0.746 Sum_probs=18.1
Q ss_pred cccccCCCceEEEEeeccccCCCceEEEEecCC
Q psy4748 104 KCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136 (136)
Q Consensus 104 ~CpkCg~~~a~f~~~Q~RSADEg~TvFY~C~~C 136 (136)
.||.||+++-.+.- |...+|-.|..|
T Consensus 2 lC~~C~~peT~l~~-------~~~~~~l~C~aC 27 (36)
T 1k81_A 2 ICRECGKPDTKIIK-------EGRVHLLKCMAC 27 (36)
T ss_dssp CCSSSCSCEEEEEE-------ETTEEEEEEETT
T ss_pred CCcCCCCCCcEEEE-------eCCcEEEEhhcC
Confidence 58888888876543 346677777765
No 56
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=76.96 E-value=0.92 Score=36.95 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=22.2
Q ss_pred cccccCCC---ccccCCCCCeEEcCCCCCceec
Q psy4748 12 EFCSKCGT---ILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 12 ~FCp~Cgn---lL~~~~~~~~~~C~~C~~~~~~ 41 (136)
..||+||+ -|......+.++|..||.+...
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e 54 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLSD 54 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEES
T ss_pred CcCCCCCCCCCceeEECCCCcEEeCCCCCCccC
Confidence 47999995 4544434579999999998653
No 57
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=76.37 E-value=2.6 Score=24.20 Aligned_cols=32 Identities=28% Similarity=0.645 Sum_probs=24.4
Q ss_pred ccccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 9 VESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 9 ~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
....||..||++|.-- .+.-+.|+.|++....
T Consensus 9 ~~pt~C~~C~~~l~g~-~~qg~~C~~C~~~~H~ 40 (50)
T 1ptq_A 9 MSPTFCDHCGSLLWGL-VKQGLKCEDCGMNVHH 40 (50)
T ss_dssp SSCCBCTTTCCBCCSS-SSCEEEETTTCCEECH
T ss_pred CCCCCcCCCCceeecc-CCccCEeCCCCCeECH
Confidence 3668999999999632 2357899999987654
No 58
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=75.18 E-value=1.4 Score=30.07 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=32.6
Q ss_pred ccCccccccccCCCccccCCC---------------------------CCeEEcCCCCCceecCCCCCCc
Q psy4748 6 YFNVESEFCSKCGTILPLFDF---------------------------KGDVKCYVCKTSYGTQEQQPLL 48 (136)
Q Consensus 6 ~~~~~~~FCp~CgnlL~~~~~---------------------------~~~~~C~~C~~~~~~~~~~~~~ 48 (136)
+.-.++.-||.|..=|.+.+. .+.++|+.|+..+++.++=|.+
T Consensus 3 ~~LLdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvm 72 (97)
T 2k5r_A 3 RKLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVL 72 (97)
T ss_dssp TTTCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEEC
T ss_pred hHHhhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCccc
Confidence 345678899999987776543 4589999999999997754444
No 59
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=75.04 E-value=1.2 Score=28.09 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=24.4
Q ss_pred ccccccCCCccccCCCCCeEEcCCCCCceecC
Q psy4748 11 SEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQ 42 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~~ 42 (136)
..-|.+||.-..++. .+.+.|+.|||..-..
T Consensus 21 ~Y~C~~Cg~~~~l~~-~~~iRC~~CG~RILyK 51 (63)
T 3h0g_L 21 IYLCADCGARNTIQA-KEVIRCRECGHRVMYK 51 (63)
T ss_dssp CCBCSSSCCBCCCCS-SSCCCCSSSCCCCCBC
T ss_pred EEECCCCCCeeecCC-CCceECCCCCcEEEEE
Confidence 357999999998874 4679999999876553
No 60
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=74.90 E-value=0.3 Score=30.83 Aligned_cols=28 Identities=29% Similarity=0.720 Sum_probs=23.1
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCC
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKT 37 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~ 37 (136)
..+||..||--+.++.++.+|+|..|-.
T Consensus 32 k~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 32 QTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCeeecccCCEeeecCCeEEEEehhhhh
Confidence 5679999999999888888899987753
No 61
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=74.30 E-value=2 Score=27.70 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=25.6
Q ss_pred ccccccc--CCCccccCCCCCeEEcC-----CCCCceec
Q psy4748 10 ESEFCSK--CGTILPLFDFKGDVKCY-----VCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~--CgnlL~~~~~~~~~~C~-----~C~~~~~~ 41 (136)
.+.+||. |++.+....+...+.|. .|++..-.
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~ 62 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCR 62 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEET
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeecc
Confidence 5789998 99999887555578998 89987654
No 62
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=74.26 E-value=0.76 Score=29.42 Aligned_cols=20 Identities=20% Similarity=0.561 Sum_probs=16.2
Q ss_pred eeccccccCCCceEEEEeec
Q psy4748 101 VERKCKRCNNDTMSYATLQL 120 (136)
Q Consensus 101 ~~~~CpkCg~~~a~f~~~Q~ 120 (136)
.+.+||.|++...+|--.|+
T Consensus 6 m~VKCp~C~niq~VFShA~t 25 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPST 25 (66)
T ss_dssp EEEECTTTCCEEEEESSCSS
T ss_pred EEEECCCCCCceEEEecCce
Confidence 57899999999999866554
No 63
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=74.16 E-value=0.6 Score=29.18 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=19.5
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCcee
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYG 40 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~ 40 (136)
.+..||.||.+-.+ ..+|..|||-..
T Consensus 29 ~l~~c~~cGe~~~~-----H~vc~~CG~Y~g 54 (60)
T 3v2d_5 29 TLVPCPECKAMKPP-----HTVCPECGYYAG 54 (60)
T ss_dssp CCEECTTTCCEECT-----TSCCTTTCEETT
T ss_pred ceeECCCCCCeecc-----eEEcCCCCcCCC
Confidence 56789999997655 447999996543
No 64
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.68 E-value=0.82 Score=29.00 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=17.7
Q ss_pred CceeccccccCCCceEEEEeec
Q psy4748 99 PIVERKCKRCNNDTMSYATLQL 120 (136)
Q Consensus 99 ~~~~~~CpkCg~~~a~f~~~Q~ 120 (136)
-=.+.+||+|++...+|-..|+
T Consensus 12 ~Fm~VkCp~C~~~q~VFSha~t 33 (63)
T 3j20_W 12 RFLRVKCIDCGNEQIVFSHPAT 33 (63)
T ss_dssp CEEEEECSSSCCEEEEESSCSS
T ss_pred cEEEEECCCCCCeeEEEecCCe
Confidence 3468999999999999976554
No 65
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=72.52 E-value=0.94 Score=28.24 Aligned_cols=27 Identities=19% Similarity=0.264 Sum_probs=20.2
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
.+.-||.||.+-.+ ..+|..|||....
T Consensus 29 ~l~~c~~cG~~~~p-----H~vc~~CG~Y~gr 55 (60)
T 2zjr_Z 29 NLTECPQCHGKKLS-----HHICPNCGYYDGR 55 (60)
T ss_dssp CCEECTTTCCEECT-----TBCCTTTCBSSSB
T ss_pred CceECCCCCCEeCC-----ceEcCCCCcCCCE
Confidence 56789999998544 5689999976543
No 66
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=72.12 E-value=1.6 Score=35.27 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=22.0
Q ss_pred cccccCCCc---cccCCCCCeEEcCCCCCcee
Q psy4748 12 EFCSKCGTI---LPLFDFKGDVKCYVCKTSYG 40 (136)
Q Consensus 12 ~FCp~Cgnl---L~~~~~~~~~~C~~C~~~~~ 40 (136)
..||+||.- |......+.++|..||.+..
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 479999984 44444456899999999775
No 67
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=68.95 E-value=1.5 Score=29.09 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=20.3
Q ss_pred cCCCceeccccccCCCceEEEEeecc
Q psy4748 96 ADGPIVERKCKRCNNDTMSYATLQLR 121 (136)
Q Consensus 96 ~~~~~~~~~CpkCg~~~a~f~~~Q~R 121 (136)
+..--++++||.|++...+|--.|+-
T Consensus 28 PnS~Fm~VkCp~C~~~q~VFSha~t~ 53 (82)
T 3u5c_b 28 PRSYFLDVKCPGCLNITTVFSHAQTA 53 (82)
T ss_dssp CCCCEEEEECTTSCSCEEEESBCSSC
T ss_pred CCCcEEEEECCCCCCeeEEEecCCeE
Confidence 33345789999999999999777653
No 68
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=67.11 E-value=2.1 Score=32.37 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=25.8
Q ss_pred cCccccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 7 ~~~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...-...||.||--..+..-.+++.|..|++.+..
T Consensus 109 v~~~~~~Cp~Cg~g~fma~h~dR~~CGkC~~t~~~ 143 (189)
T 2xzm_9 109 VSLQQKGCPKCGPGIFMAKHYDRHYCGKCHLTLKI 143 (189)
T ss_dssp EEECSEECSTTCSSCEEEECSSCEEETTTCCCBCC
T ss_pred EEEccccCCccCCCccccCccCCCccCCceeEEEe
Confidence 33445899999965555444568999999999864
No 69
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=66.77 E-value=3.7 Score=32.54 Aligned_cols=33 Identities=24% Similarity=0.687 Sum_probs=23.5
Q ss_pred cccccccCCCc-cccCCC---CCeEEcCCCCCceecC
Q psy4748 10 ESEFCSKCGTI-LPLFDF---KGDVKCYVCKTSYGTQ 42 (136)
Q Consensus 10 ~~~FCp~Cgnl-L~~~~~---~~~~~C~~C~~~~~~~ 42 (136)
.-.+||.||+. |..-++ .-.+.|..|+-.+...
T Consensus 33 ~n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyELK 69 (257)
T 4esj_A 33 RQSYCPNCGNNPLNHFENNRPVADFYCNHCSEEFELK 69 (257)
T ss_dssp HHCCCTTTCCSSCEEC----CCCEEECTTTCCEEEEE
T ss_pred HCCcCCCCCChhhhhccCCCcccccccCCcchhheec
Confidence 34699999994 543333 3579999999888764
No 70
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=66.45 E-value=5.5 Score=26.28 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=19.8
Q ss_pred cccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 12 ~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
..||+|++-|... +..+.|..|+.....
T Consensus 3 ~~CP~C~~~l~~~--~~~~~C~~C~~~~~~ 30 (81)
T 2jrp_A 3 ITCPVCHHALERN--GDTAHCETCAKDFSL 30 (81)
T ss_dssp CCCSSSCSCCEEC--SSEEECTTTCCEEEE
T ss_pred CCCCCCCCccccC--CCceECccccccCCC
Confidence 5788888888863 346678888865544
No 71
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=66.28 E-value=2.8 Score=27.83 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=21.0
Q ss_pred ccccCCCc--cccC----CCCCeEEcCCCCCceec
Q psy4748 13 FCSKCGTI--LPLF----DFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 13 FCp~Cgnl--L~~~----~~~~~~~C~~C~~~~~~ 41 (136)
=||.||.- +... .....+.|+.|+..+..
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred cCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 49999987 3322 22468999999987765
No 72
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=66.14 E-value=4.9 Score=24.72 Aligned_cols=31 Identities=16% Similarity=0.475 Sum_probs=23.9
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...||..|+.+|.-- ...-+.|..|++....
T Consensus 23 ~pt~C~~C~~~l~Gl-~~qg~~C~~C~~~~Hk 53 (66)
T 1y8f_A 23 TPTYCYECEGLLWGI-ARQGMRCTECGVKCHE 53 (66)
T ss_dssp SCCCCTTTCCCCCSS-CCEEEEETTTCCEECT
T ss_pred CCcChhhcChhhccc-CcceeEcCCCCCeeCH
Confidence 568999999999532 2346899999988654
No 73
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=64.69 E-value=6.4 Score=23.99 Aligned_cols=32 Identities=28% Similarity=0.645 Sum_probs=24.4
Q ss_pred ccccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 9 VESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 9 ~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
....||..|+.+|.-- ...-+.|..|++....
T Consensus 18 ~~pt~C~~C~~~l~Gl-~~qg~~C~~C~~~~Hk 49 (65)
T 3uej_A 18 MSPTFCDHCGSLLWGL-VKQGLKCEDCGMNVHH 49 (65)
T ss_dssp SSCCBCTTTCCBCCSS-SSCEEEETTTCCEECH
T ss_pred CCCCcccccChhhhcc-CceeeECCCCCCeEch
Confidence 3568999999999632 2357899999987654
No 74
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=64.57 E-value=5.3 Score=24.43 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=24.0
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...||..|+.+|.-- ...-+.|+.|++....
T Consensus 22 ~pt~C~~C~~~l~Gl-~~qg~~C~~C~~~~Hk 52 (65)
T 2enz_A 22 SPTFCEHCGTLLWGL-ARQGLKCDACGMNVHH 52 (65)
T ss_dssp SCCBCSSSCCBCCCS-SSCSEEESSSCCEECT
T ss_pred CCcCchhcChhheec-CCcccccCCCCCccCH
Confidence 467999999999632 2346899999988765
No 75
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.89 E-value=7 Score=25.28 Aligned_cols=31 Identities=26% Similarity=0.700 Sum_probs=24.4
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...||..|+.+|.-- ...-+.|..|++....
T Consensus 27 ~pt~C~~C~~~l~Gl-~kqG~~C~~C~~~~Hk 57 (85)
T 2eli_A 27 SPTFCDHCGSLLYGL-IHQGMKCDTCDMNVHK 57 (85)
T ss_dssp SCCBCSSSCCBCCCS-SSCEEECSSSCCEEET
T ss_pred CCcCCcccCcccccc-ccCCCcCCCcCCccCH
Confidence 568999999999642 2357899999998765
No 76
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=62.52 E-value=1.6 Score=28.89 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=19.2
Q ss_pred cCCCceeccccccCCCceEEEEeec
Q psy4748 96 ADGPIVERKCKRCNNDTMSYATLQL 120 (136)
Q Consensus 96 ~~~~~~~~~CpkCg~~~a~f~~~Q~ 120 (136)
+..--++++||.|++...+|-..|+
T Consensus 26 PnS~Fm~VkCp~C~n~q~VFShA~t 50 (81)
T 2xzm_6 26 PNSYFMDVKCAQCQNIQMIFSNAQS 50 (81)
T ss_dssp CSCCEEEEECSSSCCEEEEETTCSS
T ss_pred CCCcEEEeECCCCCCeeEEEecCcc
Confidence 3444578999999999999966554
No 77
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.85 E-value=8.9 Score=23.47 Aligned_cols=32 Identities=16% Similarity=0.458 Sum_probs=23.2
Q ss_pred CCCccCccccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 3 SEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 3 ~~~~~~~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
++..+...+.||..|+. + ..|.|+.|+..+-.
T Consensus 4 ~~~~~~~~~~~C~vC~~---~----~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 4 GSSGLKCSTVVCVICLE---K----PKYRCPACRVPYCS 35 (56)
T ss_dssp CCCCCCCCCCCCTTTCS---C----CSEECTTTCCEESS
T ss_pred cccccCCCCCccCcCcC---C----CeeeCCCCCCCeeC
Confidence 34455566779999998 2 26799999987654
No 78
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=59.68 E-value=3.8 Score=25.28 Aligned_cols=27 Identities=30% Similarity=0.743 Sum_probs=20.9
Q ss_pred CccccccccCCCccccCCCCCeEEcCCCCCc
Q psy4748 8 NVESEFCSKCGTILPLFDFKGDVKCYVCKTS 38 (136)
Q Consensus 8 ~~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~ 38 (136)
+.....|-.|+..|++... .||.|||.
T Consensus 16 ~~~k~ICrkC~ARnp~~A~----~CRKCg~~ 42 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRAT----KCRRCHST 42 (56)
T ss_dssp SCCCEEETTTCCEECTTCS----SCTTTCCC
T ss_pred HhchhhhccccCcCCcccc----cccCCCCC
Confidence 3456789999999998643 69999976
No 79
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=59.34 E-value=5.2 Score=23.67 Aligned_cols=25 Identities=24% Similarity=0.656 Sum_probs=21.3
Q ss_pred cccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 12 ~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
.||..|+.+|.. -+.|+.|+|.-..
T Consensus 15 t~C~~C~k~i~~-----G~kC~~Ck~~cH~ 39 (49)
T 1kbe_A 15 QVCNVCQKSMIF-----GVKCKHCRLKCHN 39 (49)
T ss_dssp CCCSSSCCSSCC-----EEEETTTTEEESS
T ss_pred cCccccCceeEC-----cCCCCCCCCccch
Confidence 899999999962 2899999998765
No 80
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.01 E-value=8.6 Score=24.64 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=24.6
Q ss_pred ccccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 9 VESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 9 ~~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
....||..|+.+|.-- ...-+.|..|++....
T Consensus 26 ~~pt~C~~C~~~lwGl-~kqg~~C~~C~~~~Hk 57 (83)
T 2yuu_A 26 GQPTFCSVCKDFVWGL-NKQGYKCRQCNAAIHK 57 (83)
T ss_dssp SSCCCCSSSCCCCCSS-SCCEEEETTTCCEECT
T ss_pred CCCcChhhcChhhccc-cccccccCCcCCeeCh
Confidence 3568999999999632 2357899999988765
No 81
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=58.61 E-value=3 Score=23.01 Aligned_cols=23 Identities=22% Similarity=0.687 Sum_probs=15.6
Q ss_pred cccccccCCCccccCCC-CCeEEc
Q psy4748 10 ESEFCSKCGTILPLFDF-KGDVKC 32 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~-~~~~~C 32 (136)
...-|+.|||++..-.+ ...++|
T Consensus 5 ~fY~C~~CGnivev~~~g~~~l~C 28 (36)
T 1dxg_A 5 DVYKCELCGQVVKVLEEGGGTLVC 28 (36)
T ss_dssp CEEECTTTCCEEEEEECCSSCEEE
T ss_pred cEEEcCCCCcEEEEEeCCCcCEEe
Confidence 45579999999987432 345565
No 82
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=57.21 E-value=4.5 Score=24.91 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=23.3
Q ss_pred ccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 11 SEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
..||..||..+.. .+..+.|+.|+.....
T Consensus 19 ~~~C~~Cg~~i~~--gkq~~kC~dC~~~cH~ 47 (61)
T 4b6d_A 19 PESCVPCGKRIKF--GKLSLKCRDCRVVSHP 47 (61)
T ss_dssp CEECTTTCCEECT--TCEEEEESSSSCEECG
T ss_pred CcccccccCEEEE--eeEeeECCCCCCeEch
Confidence 5799999999854 3468999999987654
No 83
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=56.74 E-value=5.6 Score=26.30 Aligned_cols=29 Identities=21% Similarity=0.547 Sum_probs=23.5
Q ss_pred ccccCCCccccCCC-CCeEEcCCCCCceec
Q psy4748 13 FCSKCGTILPLFDF-KGDVKCYVCKTSYGT 41 (136)
Q Consensus 13 FCp~CgnlL~~~~~-~~~~~C~~C~~~~~~ 41 (136)
=||.|+|+=..-+. ...+.|..|+.....
T Consensus 34 kCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 34 KCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp ECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred ECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 59999999887753 578999999998544
No 84
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=56.20 E-value=2.4 Score=28.39 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=18.1
Q ss_pred CCCceeccccccCCCceEEEEeec
Q psy4748 97 DGPIVERKCKRCNNDTMSYATLQL 120 (136)
Q Consensus 97 ~~~~~~~~CpkCg~~~a~f~~~Q~ 120 (136)
..--.+++||.|++...+|--.|+
T Consensus 31 nS~Fm~VkCp~C~~~~~VFShA~t 54 (86)
T 3iz6_X 31 NSFFMDVKCQGCFNITTVFSHSQT 54 (86)
T ss_dssp --CEEEEECTTTCCEEEEETTCSS
T ss_pred CCcEeEEECCCCCCeeEEEecCCc
Confidence 333568999999999999976664
No 85
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=55.51 E-value=4.9 Score=24.65 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=25.2
Q ss_pred ccccccccCCCccccCCCCCeEEcCC--CCCcee
Q psy4748 9 VESEFCSKCGTILPLFDFKGDVKCYV--CKTSYG 40 (136)
Q Consensus 9 ~~~~FCp~CgnlL~~~~~~~~~~C~~--C~~~~~ 40 (136)
....=||.|+.++...+.=+.+.|+. |++..-
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FC 37 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFC 37 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCS
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCCEEe
Confidence 34567999999999876656889998 887653
No 86
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=55.23 E-value=6.7 Score=25.83 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=24.4
Q ss_pred cccccccCCCccccCCC-CCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDF-KGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~-~~~~~C~~C~~~~~~ 41 (136)
..-||..|+++|.--.. ..-+.|+.|++....
T Consensus 34 ~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~Hk 66 (84)
T 2row_A 34 FPTNCEACMKPLWHMFKPPPALECRRCHIKCHK 66 (84)
T ss_dssp SCEECSSSSSEECCSSSCCCEEEESSSCCEEEH
T ss_pred CCcchhhcCHhhhccccCCCCCEecCCCCccch
Confidence 45799999999986422 237899999987764
No 87
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=54.90 E-value=7.2 Score=24.74 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=24.3
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...||..|+++|.-- ...-+.|..|++....
T Consensus 33 ~pt~C~~C~~~lwGl-~kqG~~C~~C~~~~Hk 63 (77)
T 2enn_A 33 QPTFCSVCHEFVWGL-NKQGYQCRQCNAAIHK 63 (77)
T ss_dssp SCEECSSSCCEECCT-TCCEEECSSSCCEEES
T ss_pred CCcCccccChhhccc-cccccCcCCCCCcCCH
Confidence 568999999999742 2357899999988765
No 88
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=53.73 E-value=4.9 Score=27.44 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=21.4
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCcee
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYG 40 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~ 40 (136)
.-..|+.||+--+.. +...|..|||...
T Consensus 15 tH~lCrRCG~~sfH~---qK~~CgkCGYpa~ 42 (97)
T 2zkr_2 15 THTLCRRCGSKAYHL---QKSTCGKCGYPAK 42 (97)
T ss_dssp CEECCTTTCSSCEET---TSCCBTTTCTTTS
T ss_pred CCCcCCCCCCccCcC---ccccCcccCCchH
Confidence 345899999987753 4669999999543
No 89
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=52.58 E-value=16 Score=22.99 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=8.1
Q ss_pred ccccccCCCceEE
Q psy4748 103 RKCKRCNNDTMSY 115 (136)
Q Consensus 103 ~~CpkCg~~~a~f 115 (136)
.+||-||..++..
T Consensus 3 m~Cp~Cg~~~l~~ 15 (78)
T 3ga8_A 3 MKCPVCHQGEMVS 15 (78)
T ss_dssp CBCTTTSSSBEEE
T ss_pred eECCCCCCCeeEe
Confidence 4677777765543
No 90
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=51.69 E-value=5.8 Score=28.31 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=19.7
Q ss_pred cccccCCCccccCCCCCeEEcCCCCCce
Q psy4748 12 EFCSKCGTILPLFDFKGDVKCYVCKTSY 39 (136)
Q Consensus 12 ~FCp~CgnlL~~~~~~~~~~C~~C~~~~ 39 (136)
.-|+.||.+..|+.. .|+.|+...
T Consensus 48 ~rC~~CG~~~~PPr~----~Cp~C~s~~ 71 (145)
T 3irb_A 48 SKCSKCGRIFVPARS----YCEHCFVKI 71 (145)
T ss_dssp EECTTTCCEEESCCS----EETTTTEEC
T ss_pred EEeCCCCcEEcCchh----hCcCCCCCc
Confidence 479999999999754 799998653
No 91
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=51.43 E-value=14 Score=26.17 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=14.2
Q ss_pred CCceeccccccCCCceEEE
Q psy4748 98 GPIVERKCKRCNNDTMSYA 116 (136)
Q Consensus 98 ~~~~~~~CpkCg~~~a~f~ 116 (136)
...+++.|.+||..--..|
T Consensus 64 ~~RtEV~C~~Cg~HLGHVF 82 (124)
T 2kao_A 64 PEALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp TTCEEEECTTTTCCCEEEC
T ss_pred CCEEEEEeCCCCCcCCccC
Confidence 3468999999998665544
No 92
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=50.12 E-value=14 Score=26.18 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=18.0
Q ss_pred ccccccCCCccccCC-CCCeEEcCCCCCceec
Q psy4748 11 SEFCSKCGTILPLFD-FKGDVKCYVCKTSYGT 41 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~-~~~~~~C~~C~~~~~~ 41 (136)
|-||..=++=++-.. ..++|+|..|+..-..
T Consensus 1 ~sFC~~F~ge~y~~~~e~G~Y~C~~Cg~pLF~ 32 (124)
T 2kv1_A 1 MSFCSFFGGEVFQNHFEPGVYVCAKCSYELFS 32 (124)
T ss_dssp CCCCCCCCSCSGGGTTCCEEEEETTTCCBCCC
T ss_pred CccccCccCccccCCCCCEEEEecCCCCcccc
Confidence 456764333333322 3468999999976543
No 93
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=49.06 E-value=7.6 Score=29.52 Aligned_cols=28 Identities=32% Similarity=0.650 Sum_probs=18.9
Q ss_pred ccccccCCCc--cccCCCCCeEEcCCCCCce
Q psy4748 11 SEFCSKCGTI--LPLFDFKGDVKCYVCKTSY 39 (136)
Q Consensus 11 ~~FCp~Cgnl--L~~~~~~~~~~C~~C~~~~ 39 (136)
-.-||.||.= |....++ .+.|.+||+..
T Consensus 14 ~~~CP~Cg~~d~~~~~~dg-~~~C~~Cg~~~ 43 (255)
T 1nui_A 14 HIPCDNCGSSDGNSLFSDG-HTFCYVCEKWT 43 (255)
T ss_dssp EECCSSSCCSSCEEEETTS-CEEETTTCCEE
T ss_pred CCcCCCCCCCCCceEeCCC-CeecccCCCcC
Confidence 4579999982 2221233 69999999864
No 94
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=46.01 E-value=9.7 Score=22.08 Aligned_cols=31 Identities=19% Similarity=0.465 Sum_probs=20.3
Q ss_pred cccccCCCc-------cccCCCCCeEEcCCCCCceecC
Q psy4748 12 EFCSKCGTI-------LPLFDFKGDVKCYVCKTSYGTQ 42 (136)
Q Consensus 12 ~FCp~Cgnl-------L~~~~~~~~~~C~~C~~~~~~~ 42 (136)
.-|+.||.. ...-.....+.|..||+.....
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEEC
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccC
Confidence 359999973 2111223479999999887653
No 95
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=45.99 E-value=13 Score=25.40 Aligned_cols=28 Identities=21% Similarity=0.545 Sum_probs=22.2
Q ss_pred cccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 12 EFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 12 ~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
..||.|++-|... +..+.|..|+.....
T Consensus 33 ~~CP~Cq~eL~~~--g~~~hC~~C~~~f~~ 60 (101)
T 2jne_A 33 LHCPQCQHVLDQD--NGHARCRSCGEFIEM 60 (101)
T ss_dssp CBCSSSCSBEEEE--TTEEEETTTCCEEEE
T ss_pred ccCccCCCcceec--CCEEECccccchhhc
Confidence 6999999999874 447789999876544
No 96
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=45.01 E-value=4.8 Score=27.26 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=12.2
Q ss_pred cccccccCCCccccC
Q psy4748 10 ESEFCSKCGTILPLF 24 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~ 24 (136)
...||+.||+.|...
T Consensus 66 ~r~FC~~CGs~l~~~ 80 (118)
T 3fac_A 66 KHWFCRTCGIYTHHQ 80 (118)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred eeEECCCCCccccCc
Confidence 456999999998764
No 97
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=44.52 E-value=9.3 Score=30.23 Aligned_cols=29 Identities=28% Similarity=0.662 Sum_probs=17.1
Q ss_pred eccccccCCCceEEEEeeccccCCCceEEEEecCC
Q psy4748 102 ERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136 (136)
Q Consensus 102 ~~~CpkCg~~~a~f~~~Q~RSADEg~TvFY~C~~C 136 (136)
..-||.||+....=|..=.+.|| |-|.+|
T Consensus 34 n~yCPnCG~~~l~~f~nN~PVaD------F~C~~C 62 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNRPVAD------FYCNHC 62 (257)
T ss_dssp HCCCTTTCCSSCEEC----CCCE------EECTTT
T ss_pred CCcCCCCCChhhhhccCCCcccc------cccCCc
Confidence 45799999977766666666665 446655
No 98
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.16 E-value=4.4 Score=25.58 Aligned_cols=31 Identities=29% Similarity=0.634 Sum_probs=23.8
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...||..|+++|.-- ...-+.|+.|++....
T Consensus 27 ~pt~C~~C~~~lwGl-~kqG~~C~~C~~~~Hk 57 (74)
T 2db6_A 27 KPKFCDVCARMIVLN-NKFGLRCKNCKTNIHE 57 (74)
T ss_dssp SCEECSSSCCEECHH-HHEEEEESSSCCEECT
T ss_pred CCcCchhcChhhccc-cCCccccCCCCCccCh
Confidence 457999999999632 1246899999988765
No 99
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=42.34 E-value=9.9 Score=27.19 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=19.6
Q ss_pred ccccccCCCccccCCCCCeEEcCCCCCc
Q psy4748 11 SEFCSKCGTILPLFDFKGDVKCYVCKTS 38 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~~~~~~~C~~C~~~ 38 (136)
..-|+.||.+..|+.. .|+.|+..
T Consensus 47 ~~rC~~CG~~~fPPr~----~Cp~C~s~ 70 (145)
T 2gnr_A 47 GSKCSKCGRIFVPARS----YCEHCFVK 70 (145)
T ss_dssp EEECTTTCCEEESCCS----EETTTTEE
T ss_pred EEEECCCCcEEeCCCC----CCCCCCCC
Confidence 3479999999998654 79999875
No 100
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=41.10 E-value=17 Score=29.22 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=23.9
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...||..|+.+|.-- ....+.|+.||+....
T Consensus 356 ~~t~C~~C~~~~~g~-~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 356 ETTSCKACQMLLRGT-FYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SCCBCTTTCCBCCSS-SSCEEEETTTCCEECG
T ss_pred CCCCCccccchhcee-CCCCCCCCCCcCccch
Confidence 557999999999632 2347899999988765
No 101
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=40.44 E-value=12 Score=27.72 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=20.8
Q ss_pred cccccCCCccccCCCCCeEEcCCCCCc
Q psy4748 12 EFCSKCGTILPLFDFKGDVKCYVCKTS 38 (136)
Q Consensus 12 ~FCp~CgnlL~~~~~~~~~~C~~C~~~ 38 (136)
.=||.|+.=+... ..+.|.|..|+..
T Consensus 43 ~ACp~CnKKV~~~-~~g~~~CekC~~~ 68 (172)
T 3u50_C 43 YRCTCQGKSVLKY-HGDSFFCESCQQF 68 (172)
T ss_dssp EECTTSCCCEEEE-TTTEEEETTTTEE
T ss_pred hhchhhCCEeeeC-CCCeEECCCCCCC
Confidence 3599999988733 3469999999987
No 102
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=40.07 E-value=25 Score=26.06 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=22.8
Q ss_pred ccccccCCCceEEEEeeccccC-CCceEEEEecCC
Q psy4748 103 RKCKRCNNDTMSYATLQLRSAD-EGQTIFFTCTKC 136 (136)
Q Consensus 103 ~~CpkCg~~~a~f~~~Q~RSAD-Eg~TvFY~C~~C 136 (136)
+.|+.|++++-.+.- | |+-.+|-.|..|
T Consensus 97 VlC~~C~sPdT~L~k------~~~~r~~~l~C~AC 125 (170)
T 2g2k_A 97 VLCPECENPETDLHV------NPKKQTIGNSCKAC 125 (170)
T ss_dssp HSCTTTSSSCEEEEE------ETTTTEEEEEETTT
T ss_pred EECCCCCCCccEEEE------ecCCCEEEEEcccc
Confidence 589999999987754 3 577888999877
No 103
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=39.47 E-value=17 Score=19.49 Aligned_cols=23 Identities=22% Similarity=0.535 Sum_probs=15.6
Q ss_pred ccccCCCccccCCCCCeEEcCCCCCce
Q psy4748 13 FCSKCGTILPLFDFKGDVKCYVCKTSY 39 (136)
Q Consensus 13 FCp~CgnlL~~~~~~~~~~C~~C~~~~ 39 (136)
-|+.||++=.... ..|..|+...
T Consensus 8 ~C~~C~~~Nfa~R----~~C~~C~~pk 30 (33)
T 2k1p_A 8 QCKTCSNVNWARR----SECNMCNTPK 30 (33)
T ss_dssp BCSSSCCBCCTTC----SBCSSSCCBT
T ss_pred ccCCCCCcccccc----ccccccCCcC
Confidence 4788888776654 3677777654
No 104
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=36.65 E-value=16 Score=21.77 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=22.2
Q ss_pred cccccccCCCccccCCCC--CeEEcCCCCCceecC
Q psy4748 10 ESEFCSKCGTILPLFDFK--GDVKCYVCKTSYGTQ 42 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~--~~~~C~~C~~~~~~~ 42 (136)
++.-|-.||.-...++-. -.+.|+.|||..-..
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~K 36 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFM 36 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEEC
T ss_pred cEEEeeccCCCccHHHHhhCCCcccCccCcEEEEE
Confidence 345688899888776532 367899999976653
No 105
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=35.19 E-value=9.8 Score=21.57 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=7.3
Q ss_pred eEEcCCCCCceec
Q psy4748 29 DVKCYVCKTSYGT 41 (136)
Q Consensus 29 ~~~C~~C~~~~~~ 41 (136)
.+.|..||...+.
T Consensus 9 ~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 9 QVPCEKCGSLVPV 21 (39)
T ss_dssp EEECTTTCCEEEG
T ss_pred CcccccccCcCCc
Confidence 4556666655544
No 106
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=34.66 E-value=13 Score=19.83 Aligned_cols=8 Identities=50% Similarity=0.746 Sum_probs=5.6
Q ss_pred cCCCcccc
Q psy4748 16 KCGTILPL 23 (136)
Q Consensus 16 ~CgnlL~~ 23 (136)
+|||+|+.
T Consensus 2 d~gnilps 9 (31)
T 2agh_C 2 DDGNILPS 9 (31)
T ss_dssp CCCCSSCH
T ss_pred CccccChH
Confidence 57777765
No 107
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=34.29 E-value=29 Score=28.80 Aligned_cols=31 Identities=19% Similarity=0.457 Sum_probs=23.3
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...||..||++|.-. ...-+.|..|++....
T Consensus 219 ~pt~C~~C~~~l~g~-~~qg~~C~~C~~~~Hk 249 (463)
T 3cxl_A 219 GPHWCEYCANFMWGL-IAQGVKCADCGLNVHK 249 (463)
T ss_dssp SCCBCTTTCCBCCSS-SCCEEEETTTCCEECH
T ss_pred CCCcchhhhhhhhhH-HhcCeeccccCccccc
Confidence 567999999998432 2347899999997543
No 108
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=34.04 E-value=10 Score=24.56 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=21.4
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCcee
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYG 40 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~ 40 (136)
-..+|.+||..-..........|..|+-..-
T Consensus 36 v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 36 VDILCNDCNGRSTVQFHILGMKCKICESYNT 66 (79)
T ss_dssp EEEEESSSCCEEEEECCTTCCCCTTTSCCCE
T ss_pred eEEECCCCCCCccCCceeecccCcCCCCcCe
Confidence 3468999998776654444458998886543
No 109
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.81 E-value=35 Score=24.95 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=22.4
Q ss_pred ccccccCCCceEEEEeeccccCCCceEEEEecCC
Q psy4748 103 RKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136 (136)
Q Consensus 103 ~~CpkCg~~~a~f~~~Q~RSADEg~TvFY~C~~C 136 (136)
+.|+.|++++-.+.-. .|+-++|-.|..|
T Consensus 104 VlC~~C~sPdT~L~~~-----~~~r~~~l~C~AC 132 (157)
T 2e9h_A 104 VLCPECENPETDLHVN-----PKKQTIGNSCKAC 132 (157)
T ss_dssp TSCTTTCCSCCEEEEE-----TTTTEEEEECSSS
T ss_pred EECCCCCCCccEEEEe-----cCCCEEEEEccCC
Confidence 6899999999876431 2567888899877
No 110
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=33.64 E-value=29 Score=25.70 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=21.4
Q ss_pred cccccCCCccccCC-CCCeEEcCCCCCceec
Q psy4748 12 EFCSKCGTILPLFD-FKGDVKCYVCKTSYGT 41 (136)
Q Consensus 12 ~FCp~CgnlL~~~~-~~~~~~C~~C~~~~~~ 41 (136)
.|||.|+......+ +...+.|..|..=...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~ 33 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHS 33 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEG
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccch
Confidence 57999987766654 2458899999865554
No 111
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.48 E-value=12 Score=28.68 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=24.3
Q ss_pred cccccCCCccccCCC------CCeEEcCCCCCceecC
Q psy4748 12 EFCSKCGTILPLFDF------KGDVKCYVCKTSYGTQ 42 (136)
Q Consensus 12 ~FCp~CgnlL~~~~~------~~~~~C~~C~~~~~~~ 42 (136)
.-|.-|+..|+|... ...+.|+.||..-...
T Consensus 199 ~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~ 235 (256)
T 3na7_A 199 QACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAE 235 (256)
T ss_dssp TBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECS
T ss_pred CccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeC
Confidence 369999999998632 4589999999887654
No 112
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=32.96 E-value=21 Score=30.04 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=22.8
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCce
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSY 39 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~ 39 (136)
.+..|..||.++.+......+.|+.|+...
T Consensus 4 ~~~VC~~CG~~~~~~~~~~~~~C~~C~~~~ 33 (436)
T 3qqc_A 4 EVWVCENCGHIALEDKRRRRVYCPVCGEEE 33 (436)
T ss_dssp EEEEETTTCCBCEEETTTTEEECTTTCCSS
T ss_pred EEEEeCCCCceeeeccccCccCCCCCCCCC
Confidence 346899999999865444578999998644
No 113
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=31.73 E-value=13 Score=26.91 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=24.4
Q ss_pred cCccccccccCCCc---cccCCCCCeEEcCCCCCceecCC
Q psy4748 7 FNVESEFCSKCGTI---LPLFDFKGDVKCYVCKTSYGTQE 43 (136)
Q Consensus 7 ~~~~~~FCp~Cgnl---L~~~~~~~~~~C~~C~~~~~~~~ 43 (136)
|+....-|+.|||- |........+.|..||+..+++.
T Consensus 100 yI~~yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~~ 139 (148)
T 2d74_B 100 YIKEYVICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQH 139 (148)
T ss_dssp HHHHHSSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC
T ss_pred HHHHEEECCCCCCcCcEEEEeCCEEEEEecCCCCCccccc
Confidence 33344679999983 22211134789999999998853
No 114
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.66 E-value=11 Score=25.01 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=8.9
Q ss_pred ccccCCCcccc
Q psy4748 13 FCSKCGTILPL 23 (136)
Q Consensus 13 FCp~CgnlL~~ 23 (136)
=||.||+-|.+
T Consensus 49 ~CPvCgs~l~~ 59 (112)
T 1l8d_A 49 KCPVCGRELTD 59 (112)
T ss_dssp ECTTTCCEECH
T ss_pred CCCCCCCcCCH
Confidence 48999888875
No 115
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=31.46 E-value=17 Score=19.88 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=20.3
Q ss_pred ccccCCCccccCCC----------CCeEEcCCCCCceec
Q psy4748 13 FCSKCGTILPLFDF----------KGDVKCYVCKTSYGT 41 (136)
Q Consensus 13 FCp~CgnlL~~~~~----------~~~~~C~~C~~~~~~ 41 (136)
-|+.||........ ...+.|..|+.....
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp BCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESS
T ss_pred cCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcC
Confidence 48889877654321 236999999988765
No 116
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=31.06 E-value=17 Score=19.84 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=20.9
Q ss_pred cccccCCCccccCCC----------CCeEEcCCCCCceec
Q psy4748 12 EFCSKCGTILPLFDF----------KGDVKCYVCKTSYGT 41 (136)
Q Consensus 12 ~FCp~CgnlL~~~~~----------~~~~~C~~C~~~~~~ 41 (136)
.-|+.||........ ...+.|..|++....
T Consensus 5 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 5 RECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred ccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 358999987654321 236999999987765
No 117
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=30.94 E-value=24 Score=21.74 Aligned_cols=24 Identities=21% Similarity=0.384 Sum_probs=17.0
Q ss_pred ccccccCCCccccCCCCCeEEcCCCCC
Q psy4748 11 SEFCSKCGTILPLFDFKGDVKCYVCKT 37 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~~~~~~~C~~C~~ 37 (136)
-..|..||+.-+.... -.|..|||
T Consensus 17 H~~CrRCG~~syH~qK---~~Ca~CGy 40 (57)
T 1vq8_1 17 HTKCRRCGEKSYHTKK---KVCSSCGF 40 (57)
T ss_dssp EEECTTTCSEEEETTT---TEETTTCT
T ss_pred cccccccCChhhhccc---cccccccC
Confidence 3468888887776543 37888888
No 118
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=30.70 E-value=32 Score=32.22 Aligned_cols=15 Identities=27% Similarity=0.210 Sum_probs=12.2
Q ss_pred CeEEcCCCCCceecC
Q psy4748 28 GDVKCYVCKTSYGTQ 42 (136)
Q Consensus 28 ~~~~C~~C~~~~~~~ 42 (136)
-.|.|+.|.|.+-..
T Consensus 501 phy~c~~c~~~ef~~ 515 (1041)
T 3f2b_A 501 PHYVCPNCKHSEFFN 515 (1041)
T ss_dssp SEEECTTTCCEEECC
T ss_pred ccccCcccccccccc
Confidence 379999999988764
No 119
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=30.04 E-value=12 Score=27.85 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=12.2
Q ss_pred cccccccCCCccccC
Q psy4748 10 ESEFCSKCGTILPLF 24 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~ 24 (136)
...||+.||+-|+..
T Consensus 97 ~r~FC~~CGs~l~~~ 111 (196)
T 1x6m_A 97 QRHRCRDCGVHMYGR 111 (196)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred eeEECCCCCCcCCcc
Confidence 356999999999764
No 120
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=29.69 E-value=7.8 Score=30.97 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=24.3
Q ss_pred ccccccCCCccccCC-CCCeEEcCCCCCceec
Q psy4748 11 SEFCSKCGTILPLFD-FKGDVKCYVCKTSYGT 41 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~-~~~~~~C~~C~~~~~~ 41 (136)
+.=||.|+.+||.++ .....+|+.|+|-...
T Consensus 24 ~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r~ 55 (304)
T 2f9y_B 24 WTKCDSCGQVLYRAELERNLEVCPKCDHHMRM 55 (304)
T ss_dssp EECCTTTCCCEETTHHHHTTTBCTTTCCBCCC
T ss_pred HHhhhhccchhhHHHHHHHhCCCCCCCCCCCC
Confidence 357999999999974 2346799999998765
No 121
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.66 E-value=31 Score=21.53 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=20.2
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCc
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTS 38 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~ 38 (136)
.-..|..||..-+..... .|..|||-
T Consensus 16 tH~lCrRCG~~syH~qK~---~Ca~CGyg 41 (62)
T 3j21_e 16 THIRCRRCGRVSYNVKKG---YCAACGFG 41 (62)
T ss_dssp CCCBCSSSCSBCEETTTT---EETTTCTT
T ss_pred ceeeecccCcchhccccc---cccccCCc
Confidence 356899999987775443 89999993
No 122
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=29.23 E-value=20 Score=19.90 Aligned_cols=29 Identities=14% Similarity=0.502 Sum_probs=20.3
Q ss_pred ccccCCCccccCCC----------CCeEEcCCCCCceec
Q psy4748 13 FCSKCGTILPLFDF----------KGDVKCYVCKTSYGT 41 (136)
Q Consensus 13 FCp~CgnlL~~~~~----------~~~~~C~~C~~~~~~ 41 (136)
-|+.||........ ...+.|..|++....
T Consensus 4 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp CCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESS
T ss_pred cCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence 48889876654321 236999999987765
No 123
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=28.91 E-value=45 Score=24.10 Aligned_cols=19 Identities=5% Similarity=-0.102 Sum_probs=14.6
Q ss_pred CCceeccccccCCCceEEE
Q psy4748 98 GPIVERKCKRCNNDTMSYA 116 (136)
Q Consensus 98 ~~~~~~~CpkCg~~~a~f~ 116 (136)
...+++.|.+||..--.-|
T Consensus 86 m~RtEV~C~~Cg~HLGHVF 104 (144)
T 3e0o_A 86 MIRTEVRSRTADSHLGHVF 104 (144)
T ss_dssp SCEEEEEETTTCCEEEEEE
T ss_pred ceEEEEEcCCCCCccCCcc
Confidence 4578999999988766555
No 124
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=28.25 E-value=52 Score=22.54 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=9.5
Q ss_pred eeccccccCCCce
Q psy4748 101 VERKCKRCNNDTM 113 (136)
Q Consensus 101 ~~~~CpkCg~~~a 113 (136)
-+..|+.|+|--|
T Consensus 56 y~H~C~nC~HvIA 68 (106)
T 2jox_A 56 YDHLCKNCHHVIA 68 (106)
T ss_dssp EEEEETTTCCEEE
T ss_pred EEEecCCCceEee
Confidence 3678999999433
No 125
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=27.28 E-value=41 Score=24.61 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=14.6
Q ss_pred CCCceeccccccCCCceEEE
Q psy4748 97 DGPIVERKCKRCNNDTMSYA 116 (136)
Q Consensus 97 ~~~~~~~~CpkCg~~~a~f~ 116 (136)
....+++.|.+||..--..|
T Consensus 94 gm~RtEV~C~~Cg~HLGHVF 113 (154)
T 3hcj_A 94 GMIRTEIVCARCDSHLGHVF 113 (154)
T ss_dssp TTSCEEEEETTTCCEEEEEE
T ss_pred CceEEEEEeCCCCCccCCcc
Confidence 34578999999987665544
No 126
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=27.21 E-value=51 Score=24.01 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=14.8
Q ss_pred CCceeccccccCCCceEEEE
Q psy4748 98 GPIVERKCKRCNNDTMSYAT 117 (136)
Q Consensus 98 ~~~~~~~CpkCg~~~a~f~~ 117 (136)
...+++.|.+||..--.-|.
T Consensus 106 m~RtEV~C~~Cg~HLGHVF~ 125 (151)
T 2k8d_A 106 MVRCEVLCARCDAHLGHVFD 125 (151)
T ss_dssp SCEEEEEETTEEEEEEEEEE
T ss_pred ceEEEEEeCCCCCcCCcccC
Confidence 45789999999987555443
No 127
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=26.35 E-value=64 Score=19.52 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=26.9
Q ss_pred cccccccc--CCCccccCCC----CCeEEcCCCCCceecC
Q psy4748 9 VESEFCSK--CGTILPLFDF----KGDVKCYVCKTSYGTQ 42 (136)
Q Consensus 9 ~~~~FCp~--CgnlL~~~~~----~~~~~C~~C~~~~~~~ 42 (136)
.+..-|.. |...|.|--. +..|+|..|+......
T Consensus 7 ~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P 46 (59)
T 2yrc_A 7 GEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFP 46 (59)
T ss_dssp CCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECC
T ss_pred CCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCC
Confidence 35667887 9999999732 3589999999988874
No 128
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=26.33 E-value=22 Score=23.83 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=20.5
Q ss_pred cccccCCCc-cccCC--------C------C-CeEEcCCCCCceec
Q psy4748 12 EFCSKCGTI-LPLFD--------F------K-GDVKCYVCKTSYGT 41 (136)
Q Consensus 12 ~FCp~Cgnl-L~~~~--------~------~-~~~~C~~C~~~~~~ 41 (136)
+.||.||.- |.... + . ..+.|..||-....
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
Confidence 689999975 43321 0 1 26899999987765
No 129
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=26.17 E-value=7.1 Score=31.00 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=23.0
Q ss_pred ccccccCCCccccCC-CCCeEEcCCCCCcee
Q psy4748 11 SEFCSKCGTILPLFD-FKGDVKCYVCKTSYG 40 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~-~~~~~~C~~C~~~~~ 40 (136)
+.=||.|+.+|+.++ .....+|+.|++...
T Consensus 30 ~~kc~~~~~~~y~~~l~~~~~v~p~~~~~~r 60 (285)
T 2f9i_B 30 MTKCPKCKKIMYTKELAENLNVCFNCDHHIA 60 (285)
T ss_dssp EEECTTTCCEEEHHHHHHTTTBCTTTCCBCC
T ss_pred HHhhHhhCCccchhhhHHhcCcCCCCCCCCC
Confidence 356999999999973 334679999999544
No 130
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=25.31 E-value=47 Score=24.49 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=14.6
Q ss_pred CCceeccccccCCCceEEE
Q psy4748 98 GPIVERKCKRCNNDTMSYA 116 (136)
Q Consensus 98 ~~~~~~~CpkCg~~~a~f~ 116 (136)
...+++.|.+||..--..|
T Consensus 118 m~RtEV~C~~Cg~HLGHVF 136 (164)
T 3cxk_A 118 MTRVEVRCNQCGAHLGHVF 136 (164)
T ss_dssp CCEEEEEETTTCCEEEEEE
T ss_pred cEEEEEEeCCCCCccCccc
Confidence 3578899999998665555
No 131
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=25.06 E-value=31 Score=18.28 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=4.8
Q ss_pred cccCCCcccc
Q psy4748 14 CSKCGTILPL 23 (136)
Q Consensus 14 Cp~CgnlL~~ 23 (136)
|+.||++=..
T Consensus 8 C~~C~~~Nfa 17 (32)
T 2lk0_A 8 CNKCCLNNFR 17 (32)
T ss_dssp CTTTCCEEET
T ss_pred cCcCcCCcCh
Confidence 4555554444
No 132
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=24.63 E-value=26 Score=18.27 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=8.3
Q ss_pred eeccccccCCC
Q psy4748 101 VERKCKRCNND 111 (136)
Q Consensus 101 ~~~~CpkCg~~ 111 (136)
...+|+.||..
T Consensus 2 m~~~C~~C~k~ 12 (31)
T 1zfo_A 2 MNPNCARCGKI 12 (31)
T ss_dssp CCCBCSSSCSB
T ss_pred CCCcCCccCCE
Confidence 35689999874
No 133
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=24.28 E-value=25 Score=29.48 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=20.2
Q ss_pred ccccCCCccccCC-------CC----CeEEcCCCCCcee
Q psy4748 13 FCSKCGTILPLFD-------FK----GDVKCYVCKTSYG 40 (136)
Q Consensus 13 FCp~CgnlL~~~~-------~~----~~~~C~~C~~~~~ 40 (136)
-||.||......- .+ ..+.|..|||...
T Consensus 222 ~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~n 260 (404)
T 2qkd_A 222 NCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTN 260 (404)
T ss_dssp CCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEE
T ss_pred cCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCccc
Confidence 5999998665431 12 3689999999874
No 134
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.20 E-value=28 Score=20.29 Aligned_cols=32 Identities=13% Similarity=0.471 Sum_probs=22.6
Q ss_pred cccccccCCCccccCCC----------CCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDF----------KGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~----------~~~~~C~~C~~~~~~ 41 (136)
...-|+.||........ ...+.|..|+.....
T Consensus 16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 34569999987654421 235999999988765
No 135
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.44 E-value=69 Score=18.95 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=20.8
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
+-.+|+.|+..... +...+.|..|..=...
T Consensus 5 e~~~C~~C~~~~~~--~~~mI~Cd~C~~WfH~ 34 (64)
T 1we9_A 5 SSGQCGACGESYAA--DEFWICCDLCEMWFHG 34 (64)
T ss_dssp SCCCCSSSCCCCCS--SSCEEECSSSCCEEET
T ss_pred CCCCCCCCCCccCC--CCCEEEccCCCCCCCc
Confidence 45689999875432 3568999999844343
No 136
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=23.20 E-value=40 Score=24.52 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=21.8
Q ss_pred ccccc--CCCccccCCCCCeEEcCCCCCceec
Q psy4748 12 EFCSK--CGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 12 ~FCp~--CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
.-||. |+.-+.... .+.|.|..|+...+.
T Consensus 44 ~aC~~~~CnKKv~~~~-~g~~~CekC~~~~~~ 74 (181)
T 1l1o_C 44 QACPTQDCNKKVIDQQ-NGLYRCEKCDTEFPN 74 (181)
T ss_dssp EBCCSTTCCCBCEEET-TTEEEETTTTEEESS
T ss_pred CCCCchhcCCccccCC-CCeEECCCCCCcCCC
Confidence 46999 999877533 468999999866543
No 137
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=22.42 E-value=27 Score=26.20 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=19.2
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...-|..||..+.+. ....+.|..|+...+.
T Consensus 9 ~~~~Cw~C~~~~~~~-~~~~~fC~~c~~~q~~ 39 (207)
T 3bvo_A 9 NYPRCWNCGGPWGPG-REDRFFCPQCRALQAP 39 (207)
T ss_dssp --CBCSSSCCBCCSS-CSCCCBCTTTCCBCCC
T ss_pred CCCCCCCCCCCcccc-cccccccccccccCCC
Confidence 345688888764322 2346788888877664
No 138
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=22.37 E-value=25 Score=24.46 Aligned_cols=30 Identities=23% Similarity=0.649 Sum_probs=20.1
Q ss_pred cccccccCCCccccCCC-CCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDF-KGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~-~~~~~C~~C~~~~~~ 41 (136)
...-|+.|||++..-.+ ...++| ||..-..
T Consensus 6 ~fYkC~~CGnivev~~~g~~~l~C--CG~~m~~ 36 (126)
T 1vzi_A 6 QVYKCEVCGNIVEVLNGGIGELVC--CNQDMKL 36 (126)
T ss_dssp CEEECTTTCCEEEEEECCSSCEEE--TTEECEE
T ss_pred cEEEcCCCCeEEEEEcCCCcceec--CCccccc
Confidence 45579999999975433 356677 7765443
No 139
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=22.22 E-value=17 Score=22.03 Aligned_cols=13 Identities=8% Similarity=-0.169 Sum_probs=7.7
Q ss_pred ccccccCCCcccc
Q psy4748 11 SEFCSKCGTILPL 23 (136)
Q Consensus 11 ~~FCp~CgnlL~~ 23 (136)
+..||.||.+-.+
T Consensus 27 l~~c~~cGe~~l~ 39 (56)
T 3r8s_0 27 LSVDKTSGEKHLR 39 (56)
T ss_dssp EEECTTTCCEEET
T ss_pred eeECCCCCCeecc
Confidence 4566666665444
No 140
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=22.21 E-value=63 Score=24.15 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=23.5
Q ss_pred ccccccCCCccccCCCCCeEEcCCCCCceecC
Q psy4748 11 SEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQ 42 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~~ 42 (136)
.-.|+. |+.|.+.. ...+.|+.||..+...
T Consensus 169 ~A~c~~-g~~m~~~~-~~~m~cp~cg~~E~RK 198 (209)
T 2nn6_I 169 VAHSES-GIQMVPIS-WCEMQCPKTHTKEFRK 198 (209)
T ss_dssp CCBCSS-SCBCEEEE-TTEEECTTTTCCBCCC
T ss_pred EEEcCC-CCEEEEcc-CCEEECCCCCCEEeec
Confidence 347988 88888754 3689999999988764
No 141
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.86 E-value=53 Score=19.70 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=25.9
Q ss_pred CCccCccccccccCCCccccCCC---------CCeEEcCCCCCcee
Q psy4748 4 EGYFNVESEFCSKCGTILPLFDF---------KGDVKCYVCKTSYG 40 (136)
Q Consensus 4 ~~~~~~~~~FCp~CgnlL~~~~~---------~~~~~C~~C~~~~~ 40 (136)
+..|.....-|+.|+..+.+.+. ..-+.|..|+....
T Consensus 2 s~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~ 47 (76)
T 2cu8_A 2 SSGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLT 47 (76)
T ss_dssp CCSCCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCC
T ss_pred ccccCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccC
Confidence 35677777889999999886432 12377888876554
No 142
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.99 E-value=29 Score=20.15 Aligned_cols=31 Identities=19% Similarity=0.524 Sum_probs=21.0
Q ss_pred ccccccCCCccccCCC----------CCeEEcCCCCCceec
Q psy4748 11 SEFCSKCGTILPLFDF----------KGDVKCYVCKTSYGT 41 (136)
Q Consensus 11 ~~FCp~CgnlL~~~~~----------~~~~~C~~C~~~~~~ 41 (136)
..-|+.||........ ...+.|..|++....
T Consensus 14 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 3469999876543321 246899999987765
No 143
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=20.96 E-value=22 Score=25.37 Aligned_cols=27 Identities=26% Similarity=0.700 Sum_probs=20.4
Q ss_pred ccccccCCCceEEEEeeccccCCCceEEEEecCC
Q psy4748 103 RKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136 (136)
Q Consensus 103 ~~CpkCg~~~a~f~~~Q~RSADEg~TvFY~C~~C 136 (136)
+.|+.|++++-...- |+-+.|-.|..|
T Consensus 103 VlC~~C~sPdT~l~k-------~~r~~~l~C~AC 129 (138)
T 1nee_A 103 VICHECNRPDTRIIR-------EGRISLLKCEAC 129 (138)
T ss_dssp HHHTCCSSCSSCCEE-------ETTTTEEECSTT
T ss_pred EECCCCCCcCcEEEE-------cCCeEEEEccCC
Confidence 579999999876542 456788888777
No 144
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=20.88 E-value=28 Score=23.13 Aligned_cols=29 Identities=17% Similarity=0.380 Sum_probs=20.3
Q ss_pred cccccCCCccccCCC-----CCeEEcCCCCCceec
Q psy4748 12 EFCSKCGTILPLFDF-----KGDVKCYVCKTSYGT 41 (136)
Q Consensus 12 ~FCp~CgnlL~~~~~-----~~~~~C~~C~~~~~~ 41 (136)
..|| ||....+.+. ...+.|+.|.-...+
T Consensus 24 ypCr-CGd~F~IteedLe~ge~iv~C~sCSL~IkV 57 (89)
T 2jr7_A 24 YPCP-CGDNFSITKEDLENGEDVATCPSCSLIIKV 57 (89)
T ss_dssp EECT-TSSEEEEEHHHHHHTCCEEECTTTCCEEEE
T ss_pred EcCC-CCCEEEECHHHHhCCCEEEECCCCccEEEE
Confidence 4597 9998777632 357899999855443
No 145
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=20.71 E-value=61 Score=27.95 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=23.7
Q ss_pred cccccccCCCccccCCCCCeEEcCCCCCceec
Q psy4748 10 ESEFCSKCGTILPLFDFKGDVKCYVCKTSYGT 41 (136)
Q Consensus 10 ~~~FCp~CgnlL~~~~~~~~~~C~~C~~~~~~ 41 (136)
...||..||.+|.--. ..-+.|..|++....
T Consensus 112 ~~~~C~~C~~~l~g~~-~qg~~C~~C~~~~H~ 142 (674)
T 3pfq_A 112 SPTFCDHCGSLLYGLI-HQGMKCDTCMMNVHK 142 (674)
T ss_dssp SCCCCSSSCSCCBBSS-SCEECCSSSCCCBCS
T ss_pred CCCCCCccccccchhh-cCccccccCCcchhh
Confidence 5669999999997422 357899999987654
No 146
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=20.23 E-value=48 Score=24.01 Aligned_cols=19 Identities=5% Similarity=-0.116 Sum_probs=14.3
Q ss_pred CCceeccccccCCCceEEE
Q psy4748 98 GPIVERKCKRCNNDTMSYA 116 (136)
Q Consensus 98 ~~~~~~~CpkCg~~~a~f~ 116 (136)
...+++.|.+||..--.-|
T Consensus 88 m~RtEV~C~~Cg~HLGHVF 106 (146)
T 3hcg_A 88 MRRTEVRSHAADSHLGHVF 106 (146)
T ss_dssp EEEEEEEETTTCCEEEEEE
T ss_pred cEEEEEEeCCCCCccCcee
Confidence 3467899999988766555
No 147
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.16 E-value=29 Score=22.01 Aligned_cols=30 Identities=17% Similarity=0.474 Sum_probs=21.4
Q ss_pred cccccCCCccccCCC----------CCeEEcCCCCCceec
Q psy4748 12 EFCSKCGTILPLFDF----------KGDVKCYVCKTSYGT 41 (136)
Q Consensus 12 ~FCp~CgnlL~~~~~----------~~~~~C~~C~~~~~~ 41 (136)
.-|+.||....-... ...|.|..|+.....
T Consensus 29 h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp EECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred EECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 369999987655432 236899999988765
No 148
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=20.05 E-value=37 Score=23.94 Aligned_cols=17 Identities=24% Similarity=0.700 Sum_probs=14.8
Q ss_pred CeEEcCCCCCceecCCC
Q psy4748 28 GDVKCYVCKTSYGTQEQ 44 (136)
Q Consensus 28 ~~~~C~~C~~~~~~~~~ 44 (136)
+.++|+.||..+++.++
T Consensus 98 G~L~Cp~cgr~ypI~~G 114 (125)
T 3q87_A 98 GSLRCDMCGLIYPIKGS 114 (125)
T ss_dssp EEEEETTTCCEEEEETT
T ss_pred EEEECCCCCCEeeccCC
Confidence 57999999999999753
Done!