Your job contains 1 sequence.
>psy4748
MTSEGYFNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFK
GHFNLFLAVFEEIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQL
RSADEGQTIFFTCTKC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4748
(136 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0038903 - symbol:RpI12 "RpI12" species:7227 "Droso... 235 9.2e-20 1
CGD|CAL0006382 - symbol:RPA12 species:5476 "Candida albic... 153 9.8e-17 2
UNIPROTKB|B6ICU4 - symbol:ZNRD1 "DNA-directed RNA polymer... 153 9.8e-17 2
UNIPROTKB|F1PIF7 - symbol:ZNRD1 "DNA-directed RNA polymer... 155 2.5e-16 2
MGI|MGI:1913386 - symbol:Znrd1 "zinc ribbon domain contai... 146 4.1e-16 2
RGD|1303114 - symbol:Znrd1 "zinc ribbon domain containing... 150 6.6e-16 2
WB|WBGene00007616 - symbol:rpoa-12 species:6239 "Caenorha... 134 7.2e-15 2
SGD|S000003824 - symbol:RPA12 "RNA polymerase I subunit A... 159 4.9e-14 2
POMBASE|SPCC1259.03 - symbol:rpa12 "DNA-directed RNA poly... 136 1.1e-12 2
TAIR|locus:2092185 - symbol:AT3G25940 species:3702 "Arabi... 116 7.4e-12 2
UNIPROTKB|Q9P1U0 - symbol:ZNRD1 "DNA-directed RNA polymer... 159 1.0e-11 1
ZFIN|ZDB-GENE-050320-131 - symbol:znrd1 "zinc ribbon doma... 159 1.0e-11 1
UNIPROTKB|Q1RMP0 - symbol:ZNRD1 "DNA-directed RNA polymer... 155 2.8e-11 1
UNIPROTKB|G4N0C7 - symbol:MGG_07394 "DNA-directed RNA pol... 108 1.0e-10 2
ASPGD|ASPL0000068730 - symbol:AN10970 species:162425 "Eme... 112 1.1e-09 2
DICTYBASE|DDB_G0278263 - symbol:rpa12 "RNA polymerase I s... 145 1.2e-09 1
TAIR|locus:2035322 - symbol:AT1G01210 species:3702 "Arabi... 103 5.7e-09 2
TAIR|locus:2120527 - symbol:AT4G07950 species:3702 "Arabi... 103 7.3e-09 2
POMBASE|SPAC22A12.05 - symbol:rpc11 "DNA-directed RNA pol... 84 2.1e-06 2
GENEDB_PFALCIPARUM|PFB0290c - symbol:PFB0290c "transcript... 106 4.3e-06 1
UNIPROTKB|O96159 - symbol:PFB0290c "DNA-directed RNA poly... 106 4.3e-06 1
WB|WBGene00022309 - symbol:rpc-11 species:6239 "Caenorhab... 77 6.3e-05 2
>FB|FBgn0038903 [details] [associations]
symbol:RpI12 "RpI12" species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;NAS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS;NAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=NAS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
EMBL:AE014297 GO:GO:0005634 GO:GO:0008270 GO:GO:0006351
GO:GO:0003676 GO:GO:0003899 eggNOG:COG1594
GeneTree:ENSGT00390000008126 KO:K03000 InterPro:IPR019761
PROSITE:PS01030 EMBL:BT050591 RefSeq:NP_524439.1 UniGene:Dm.16638
SMR:Q9VD81 STRING:Q9VD81 EnsemblMetazoa:FBtr0084166 GeneID:42563
KEGG:dme:Dmel_CG13418 UCSC:CG13418-RA CTD:42563 FlyBase:FBgn0038903
InParanoid:Q9VD81 OMA:GYKETEN OrthoDB:EOG47SQXD GenomeRNAi:42563
NextBio:829443 Uniprot:Q9VD81
Length = 120
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 69 VFEEIKAEYTIHFNTVEKEKQKDKTEI-----ADGPIVERKCKRCNNDTMSYATLQLRSA 123
V+ K+E+TIHFNT + K ++T+ ADGP+VERKC +CN+D MSYATLQLRSA
Sbjct: 40 VYSGEKSEFTIHFNTYDPSKVFNRTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSA 99
Query: 124 DEGQTIFFTCTKC 136
DEGQT+FFTC KC
Sbjct: 100 DEGQTVFFTCLKC 112
Score = 87 (35.7 bits), Expect = 0.00048, P = 0.00048
Identities = 25/66 (37%), Positives = 31/66 (46%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLKRFKGHFNLF--LAVF 70
FC CG+ILP KG+V CY CK +E QP + + F HFN + VF
Sbjct: 10 FCPSCGSILPELQVKGNVICYNCK-----KEFQPDVYSGE---KSEFTIHFNTYDPSKVF 61
Query: 71 EEIKAE 76
K E
Sbjct: 62 NRTKRE 67
>CGD|CAL0006382 [details] [associations]
symbol:RPA12 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0042790 "transcription of nuclear
large rRNA transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
CGD:CAL0006382 GO:GO:0005634 EMBL:AACQ01000095 EMBL:AACQ01000096
GO:GO:0008270 GO:GO:0006351 GO:GO:0003676 GO:GO:0003899
eggNOG:COG1594 HOGENOM:HOG000228133 KO:K03000 RefSeq:XP_714814.1
RefSeq:XP_714876.1 ProteinModelPortal:Q59Z13 STRING:Q59Z13
GeneID:3643477 GeneID:3643566 KEGG:cal:CaO19.2287
KEGG:cal:CaO19.9827 Uniprot:Q59Z13
Length = 123
Score = 153 (58.9 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 83 TVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+V K K K E+ +G ++ KC +C N+ M Y TLQLRSADEG T+F+TCT C
Sbjct: 63 SVVKTSLK-KDELDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTNC 115
Score = 67 (28.6 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSY 39
FC+ CG +L ++KC VC +Y
Sbjct: 9 FCNYCGNLLDSHSSSSEIKCTVCSAAY 35
>UNIPROTKB|B6ICU4 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase subunit"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 GO:GO:0005634 GO:GO:0008270 GO:GO:0006351
GO:GO:0003676 GO:GO:0003899 CTD:30834 eggNOG:COG1594
GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG OrthoDB:EOG45X7XM
InterPro:IPR019761 PROSITE:PS01030 EMBL:CT737425 EMBL:CU607067
EMBL:AB158486 EMBL:AB158487 EMBL:AP009553 RefSeq:NP_001162172.1
RefSeq:XP_001929376.1 UniGene:Ssc.45148 STRING:B6ICU4
Ensembl:ENSSSCT00000001352 Ensembl:ENSSSCT00000001359
Ensembl:ENSSSCT00000034579 GeneID:100152094 GeneID:100155727
KEGG:ssc:100152094 KEGG:ssc:100155727 Uniprot:B6ICU4
Length = 123
Score = 153 (58.9 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 24/39 (61%), Positives = 33/39 (84%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
GP+V+R+C RC ++ M+Y T Q+RSADEGQT+F+TCT C
Sbjct: 77 GPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
Score = 67 (28.6 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLK 57
F + +FC CG++LPL + V C C S ++ + ++ ++F K
Sbjct: 10 FQSDLDFCPDCGSVLPLPGTQDAVICTRCGFSINVRDFEGKVVKTSVVFQK 60
>UNIPROTKB|F1PIF7 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase subunit"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 GO:GO:0005634 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899
GeneTree:ENSGT00390000008126 OMA:SRCGHEG InterPro:IPR019761
PROSITE:PS01030 EMBL:AAEX03017624 ProteinModelPortal:F1PIF7
Ensembl:ENSCAFT00000019352 Uniprot:F1PIF7
Length = 126
Score = 155 (59.6 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 90 KDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+++ E+ GP+V+R+C RC ++ M+Y T Q+RSADEGQT+F+TCT C
Sbjct: 73 QEEPEL-QGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTSC 118
Score = 61 (26.5 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVC 35
F + +FC CG++LPL + V C C
Sbjct: 13 FQSDLDFCPDCGSVLPLPGAQDAVTCVRC 41
>MGI|MGI:1913386 [details] [associations]
symbol:Znrd1 "zinc ribbon domain containing, 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Reactome:REACT_78136 InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 MGI:MGI:1913386 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 GO:GO:0003676
GO:GO:0003899 CTD:30834 eggNOG:COG1594 GeneTree:ENSGT00390000008126
HOGENOM:HOG000228133 HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG
OrthoDB:EOG45X7XM InterPro:IPR019761 PROSITE:PS01030 EMBL:AF230339
EMBL:AF230340 EMBL:AK003714 EMBL:BC043016 EMBL:AK005976
IPI:IPI00133128 RefSeq:NP_075651.1 UniGene:Mm.486229
ProteinModelPortal:Q791N7 SMR:Q791N7 STRING:Q791N7 PRIDE:Q791N7
Ensembl:ENSMUST00000113669 Ensembl:ENSMUST00000172518 GeneID:66136
KEGG:mmu:66136 UCSC:uc008clo.1 InParanoid:Q791N7
Reactome:REACT_86751 NextBio:320734 Bgee:Q791N7 CleanEx:MM_ZNRD1
Genevestigator:Q791N7 GermOnline:ENSMUSG00000036315 Uniprot:Q791N7
Length = 123
Score = 146 (56.5 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 98 GPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
GP+++R+C RC ++ M+Y T Q+RSADEGQT+F+TC C
Sbjct: 77 GPVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCINC 115
Score = 68 (29.0 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLK 57
F + +FC CG++LPL + V C C S ++ + ++ ++F K
Sbjct: 10 FQSDLDFCPDCGSVLPLPGIQDTVICSRCGFSIDVRDCEGKVVKTSVVFNK 60
>RGD|1303114 [details] [associations]
symbol:Znrd1 "zinc ribbon domain containing 1" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 RGD:1303114 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 CTD:30834 eggNOG:COG1594
GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG OrthoDB:EOG45X7XM
InterPro:IPR019761 PROSITE:PS01030 EMBL:BX883052 IPI:IPI00422027
RefSeq:NP_001159772.1 RefSeq:NP_998732.1 UniGene:Rn.4312
ProteinModelPortal:Q6MFY5 STRING:Q6MFY5 PRIDE:Q6MFY5
Ensembl:ENSRNOT00000001012 GeneID:361784 KEGG:rno:361784
UCSC:RGD:1303114 InParanoid:Q6MFY5 NextBio:677596
Genevestigator:Q6MFY5 GermOnline:ENSRNOG00000000779 Uniprot:Q6MFY5
Length = 123
Score = 150 (57.9 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 24/46 (52%), Positives = 35/46 (76%)
Query: 91 DKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
D+ + GP+V+R+C RC ++ M+Y T Q+RSADEGQT+F+TC C
Sbjct: 70 DEGPESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINC 115
Score = 62 (26.9 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 7 FNVESEFCSKCGTILPLFDFKGDVKCYVCKTSYGTQEQQPLLLGPDILFLK 57
F + +FC CG++LPL + V C C S ++ ++ ++F K
Sbjct: 10 FQSDLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNK 60
>WB|WBGene00007616 [details] [associations]
symbol:rpoa-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS51133
SMART:SM00440 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0000003 GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 EMBL:Z81035
eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
KO:K03000 OMA:YHTLQLR PIR:T19321 RefSeq:NP_506572.1 HSSP:Q56254
ProteinModelPortal:O17587 SMR:O17587 STRING:O17587 PaxDb:O17587
EnsemblMetazoa:C15H11.8.1 EnsemblMetazoa:C15H11.8.2 GeneID:182648
KEGG:cel:CELE_C15H11.8 UCSC:C15H11.8 CTD:182648 WormBase:C15H11.8
InParanoid:O17587 NextBio:918334 Uniprot:O17587
Length = 119
Score = 134 (52.2 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 79 IHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
I+ TV + E AD +V+ C +C + SY+T+Q RSADEGQT+F+TC KC
Sbjct: 55 IYERTVADTDGIENDESADA-VVDHICTKCGHSKASYSTMQTRSADEGQTVFYTCLKC 111
Score = 68 (29.0 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 6 YFNVESEFCSKCGTILPL-FDFKGDVKCYVCKTSYGTQEQ 44
+ + + +FC CG IL L V C VC T + +E+
Sbjct: 5 FLSYDDDFCGYCGAILELPAQAPATVSCKVCSTRWAVKER 44
>SGD|S000003824 [details] [associations]
symbol:RPA12 "RNA polymerase I subunit A12.2" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IDA] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 SGD:S000003824
EMBL:BK006943 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:L47993
GO:GO:0006363 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790 EMBL:L35564
eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
KO:K03000 InterPro:IPR019761 PROSITE:PS01030 OrthoDB:EOG45QMPS
EMBL:L00708 EMBL:Z49563 EMBL:AY558313 PIR:A48107 RefSeq:NP_012597.1
ProteinModelPortal:P32529 SMR:P32529 DIP:DIP-236N IntAct:P32529
MINT:MINT-472816 STRING:P32529 PaxDb:P32529 PeptideAtlas:P32529
PRIDE:P32529 EnsemblFungi:YJR063W GeneID:853526 KEGG:sce:YJR063W
CYGD:YJR063w OMA:YHTLQLR NextBio:974215 Genevestigator:P32529
GermOnline:YJR063W Uniprot:P32529
Length = 125
Score = 159 (61.0 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 83 TVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+V K K K E+ DG ++ KC +C N+ M+Y TLQLRSADEG T+F+TCT C
Sbjct: 65 SVVKTSLK-KNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSC 117
Score = 35 (17.4 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 8 NVESEFCSKCGTILPLFDF 26
NVE CS+C I P F
Sbjct: 27 NVE---CSQCKAIYPKSQF 42
>POMBASE|SPCC1259.03 [details] [associations]
symbol:rpa12 "DNA-directed RNA polymerase complex I
subunit Rpa12" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IGI] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
PomBase:SPCC1259.03 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 GO:GO:0006353
eggNOG:COG1594 HOGENOM:HOG000228133 KO:K03000 InterPro:IPR019761
PROSITE:PS01030 EMBL:AF219943 EMBL:AB023403 EMBL:AB023817
PIR:T40892 RefSeq:NP_588059.1 ProteinModelPortal:O94703
STRING:O94703 PRIDE:O94703 EnsemblFungi:SPCC1259.03.1
GeneID:2538906 KEGG:spo:SPCC1259.03 OMA:CGNLLES OrthoDB:EOG45QMPS
NextBio:20800084 Uniprot:O94703
Length = 119
Score = 136 (52.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 84 VEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
V+ E QK+ + +E KC +C ND M++ TLQLRSADEG T+F+ C +C
Sbjct: 64 VQVESQKE-----EAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRC 111
Score = 45 (20.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 13 FCSKCGTILPLFDFKGDVKCYVCKTSYGTQE 43
FCS+CG +L + C C++ Y +++
Sbjct: 9 FCSECGNLLESTTAQWTT-CDQCQSVYPSEQ 38
>TAIR|locus:2092185 [details] [associations]
symbol:AT3G25940 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB023041
GO:GO:0008270 GO:GO:0006351 GO:GO:0003676 GO:GO:0003899
eggNOG:COG1594 HOGENOM:HOG000228133 KO:K03000 HSSP:P23193
EMBL:AY084292 EMBL:BT024567 IPI:IPI00539114 RefSeq:NP_566786.1
UniGene:At.37301 ProteinModelPortal:Q9LU97 SMR:Q9LU97 IntAct:Q9LU97
STRING:Q9LU97 PaxDb:Q9LU97 PRIDE:Q9LU97 EnsemblPlants:AT3G25940.1
GeneID:822191 KEGG:ath:AT3G25940 TAIR:At3g25940 InParanoid:Q9LU97
OMA:EINKKCE PhylomeDB:Q9LU97 ProtClustDB:CLSN2688785
Genevestigator:Q9LU97 Uniprot:Q9LU97
Length = 119
Score = 116 (45.9 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 91 DKTEI-ADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+KT+ A+ P +++ C++C + + Y T Q RSADEGQT ++TC C
Sbjct: 66 EKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNC 112
Score = 57 (25.1 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 10 ESEF--CSKCGTILPLFDFKGDVKCYVCKTSYGTQE 43
ESEF C+ CGT+L L K +C CKT+ ++
Sbjct: 6 ESEFLFCNLCGTMLVLKSTKY-AECPHCKTTRNAKD 40
>UNIPROTKB|Q9P1U0 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase I subunit RPA12"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=TAS]
InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
GO:GO:0005730 GO:GO:0046872 GO:GO:0006139 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 EMBL:AL669914
EMBL:AL671859 EMBL:AL845439 EMBL:BX088647 CTD:30834 eggNOG:COG1594
HOGENOM:HOG000228133 HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG
OrthoDB:EOG45X7XM InterPro:IPR019761 PROSITE:PS01030 EMBL:AF024617
EMBL:AF230337 EMBL:AF230338 EMBL:CR457109 EMBL:BC010898
EMBL:BC050608 IPI:IPI00395539 RefSeq:NP_055411.1 RefSeq:NP_740753.1
UniGene:Hs.57813 ProteinModelPortal:Q9P1U0 SMR:Q9P1U0 IntAct:Q9P1U0
MINT:MINT-1435192 STRING:Q9P1U0 DMDM:71649339 PaxDb:Q9P1U0
PeptideAtlas:Q9P1U0 PRIDE:Q9P1U0 DNASU:30834
Ensembl:ENST00000332435 Ensembl:ENST00000359374
Ensembl:ENST00000376782 Ensembl:ENST00000376785
Ensembl:ENST00000383613 Ensembl:ENST00000400659
Ensembl:ENST00000400660 Ensembl:ENST00000400662
Ensembl:ENST00000412396 Ensembl:ENST00000417275
Ensembl:ENST00000417738 Ensembl:ENST00000420100
Ensembl:ENST00000428913 Ensembl:ENST00000429558
Ensembl:ENST00000431032 Ensembl:ENST00000431416
Ensembl:ENST00000432227 Ensembl:ENST00000432545
Ensembl:ENST00000432904 Ensembl:ENST00000433264
Ensembl:ENST00000437373 Ensembl:ENST00000437507
Ensembl:ENST00000441251 Ensembl:ENST00000442585
Ensembl:ENST00000443142 Ensembl:ENST00000443494
Ensembl:ENST00000444027 Ensembl:ENST00000444794
Ensembl:ENST00000446493 Ensembl:ENST00000451875
Ensembl:ENST00000453694 Ensembl:ENST00000455948 GeneID:30834
KEGG:hsa:30834 UCSC:uc003noz.3 GeneCards:GC06P030026
HGNC:HGNC:13182 MIM:607525 neXtProt:NX_Q9P1U0 PharmGKB:PA37754
InParanoid:Q9P1U0 PhylomeDB:Q9P1U0 GenomeRNAi:30834 NextBio:52944
ArrayExpress:Q9P1U0 Bgee:Q9P1U0 CleanEx:HS_ZNRD1
Genevestigator:Q9P1U0 GermOnline:ENSG00000066379 Uniprot:Q9P1U0
Length = 126
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 63 FNLFLAVFEE--IKAEYTIH-FNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQ 119
FN+ + FE +K H T ++ E GP+V+R+C RC ++ M+Y T Q
Sbjct: 43 FNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEGPE-CQGPVVDRRCPRCGHEGMAYHTRQ 101
Query: 120 LRSADEGQTIFFTCTKC 136
+RSADEGQT+F+TCT C
Sbjct: 102 MRSADEGQTVFYTCTNC 118
>ZFIN|ZDB-GENE-050320-131 [details] [associations]
symbol:znrd1 "zinc ribbon domain containing 1"
species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 ZFIN:ZDB-GENE-050320-131
GO:GO:0005634 GO:GO:0008270 GO:GO:0006351 GO:GO:0003676
GO:GO:0003899 GeneTree:ENSGT00390000008126 InterPro:IPR019761
PROSITE:PS01030 EMBL:FP085397 EMBL:BX537309 IPI:IPI00994518
Ensembl:ENSDART00000139323 ArrayExpress:F1R4I1 Bgee:F1R4I1
Uniprot:F1R4I1
Length = 126
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 63 FNLFLAVFEEIKAEYTIHFNTVEKEKQK-DKTEIAD--GPIVERKCKRCNNDTMSYATLQ 119
F + + F + ++ FN +++ + E A+ GP+++RKC RCN + M Y T Q
Sbjct: 42 FKISVQDFTSQVIKSSVMFNPLDQSNVAVESAEDAELKGPVIDRKCSRCNKEGMVYHTRQ 101
Query: 120 LRSADEGQTIFFTCTKC 136
+RSADEGQT+FFTC C
Sbjct: 102 MRSADEGQTVFFTCIHC 118
>UNIPROTKB|Q1RMP0 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase I subunit RPA12"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 EMBL:BC114799
IPI:IPI00708048 RefSeq:NP_001039865.1 RefSeq:XP_003583930.1
UniGene:Bt.1771 ProteinModelPortal:Q1RMP0 STRING:Q1RMP0
Ensembl:ENSBTAT00000045075 GeneID:100849450 GeneID:535288
KEGG:bta:100849450 KEGG:bta:535288 CTD:30834 eggNOG:COG1594
GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
HOVERGEN:HBG055084 InParanoid:Q1RMP0 KO:K03000 OMA:SRCGHEG
OrthoDB:EOG45X7XM NextBio:20876684 ArrayExpress:Q1RMP0
InterPro:IPR019761 PROSITE:PS01030 Uniprot:Q1RMP0
Length = 123
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 63 FNLFLAVFEEIKAEYTIHFN---TVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQ 119
F++ + FE + ++ FN T ++ E GP+V+R+C RC ++ M+Y T Q
Sbjct: 40 FSINVRDFEGKVVKTSVVFNKLGTAMPLSMEEGPEF-QGPVVDRRCSRCGHEGMAYHTRQ 98
Query: 120 LRSADEGQTIFFTCTKC 136
+RSADEGQT+F+TCT C
Sbjct: 99 MRSADEGQTVFYTCTNC 115
>UNIPROTKB|G4N0C7 [details] [associations]
symbol:MGG_07394 "DNA-directed RNA polymerase subunit"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS51133
SMART:SM00440 GO:GO:0005634 EMBL:CM001233 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 KO:K03000
RefSeq:XP_003711272.1 ProteinModelPortal:G4N0C7
EnsemblFungi:MGG_07394T0 GeneID:2683314 KEGG:mgr:MGG_07394
Uniprot:G4N0C7
Length = 115
Score = 108 (43.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 86 KEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
K+ + E+ + P ++ C+ C + T+ Y TLQ R ADEG T+F+ C C
Sbjct: 58 KDAMASRPEM-NWPSIDENCRFCPSKTVRYTTLQTRGADEGSTVFYFCEGC 107
Score = 54 (24.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVC 35
+FC+ CG LP+ +VKC C
Sbjct: 4 QFCNDCGDTLPISG-NPEVKCDCC 26
>ASPGD|ASPL0000068730 [details] [associations]
symbol:AN10970 species:162425 "Emericella nidulans"
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS51133 SMART:SM00440 GO:GO:0005634
GO:GO:0008270 GO:GO:0006351 GO:GO:0003676 EMBL:BN001304
GO:GO:0003899 HOGENOM:HOG000228133 InterPro:IPR019761
PROSITE:PS01030 OMA:YHTLQLR EnsemblFungi:CADANIAT00000597
Uniprot:C8VBI0
Length = 121
Score = 112 (44.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 82 NTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
+ ++ Q DK A ++E+ C +C M + T+QLRSADEG T+F+TC
Sbjct: 63 SAIQTLTQADKRTEA---LIEKDCPKCGRKEMYFTTVQLRSADEGSTVFYTC 111
Score = 40 (19.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 13 FCSKCGTILP--LFDFKGDVKCYVCKT 37
FC+ CG++L + D + C VC T
Sbjct: 9 FCTDCGSLLEGSVGDPTRILVCDVCGT 35
>DICTYBASE|DDB_G0278263 [details] [associations]
symbol:rpa12 "RNA polymerase I subunit" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001222 Pfam:PF01096 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 dictyBase:DDB_G0278263 GenomeReviews:CM000152_GR
EMBL:AAFI02000023 GO:GO:0008270 GO:GO:0003676 GO:GO:0006360
GO:GO:0005736 GO:GO:0003899 eggNOG:COG1594 RefSeq:XP_642247.1
ProteinModelPortal:Q54YF5 PRIDE:Q54YF5 EnsemblProtists:DDB0220615
GeneID:8621456 KEGG:ddi:DDB_G0278263 InParanoid:Q54YF5 OMA:QKDQTPQ
Uniprot:Q54YF5
Length = 324
Score = 145 (56.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 34/88 (38%), Positives = 44/88 (50%)
Query: 57 KRFKGHFNLFLAVFEEIKAEY--------TIHFNTVEKEKQKDKTEIADGPIVERKCKRC 108
K F H L F + KA+ + FN K K++D E G I++ KC C
Sbjct: 230 KNFSQHITCSLCTFSKSKADLLNKKIVTKSSLFNKSIKNKEEDNEEDR-GAIIDEKCPEC 288
Query: 109 NNDTMSYATLQLRSADEGQTIFFTCTKC 136
+ M + T Q RSADEGQTIF+ C KC
Sbjct: 289 GHGKMYFKTAQTRSADEGQTIFYDCVKC 316
>TAIR|locus:2035322 [details] [associations]
symbol:AT1G01210 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR006288
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
EMBL:CP002684 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
EMBL:AC023628 GO:GO:0003899 eggNOG:COG1594 InterPro:IPR019761
PROSITE:PS01030 HOGENOM:HOG000228131 KO:K03019 HSSP:Q56254
EMBL:BT008558 EMBL:BT008671 EMBL:AK229520 IPI:IPI00532164
PIR:C86142 RefSeq:NP_171629.1 UniGene:At.42660
ProteinModelPortal:Q9LNK0 SMR:Q9LNK0 IntAct:Q9LNK0 STRING:Q9LNK0
EnsemblPlants:AT1G01210.1 GeneID:839481 KEGG:ath:AT1G01210
TAIR:At1g01210 InParanoid:Q9LNK0 OMA:CGYEEAY PhylomeDB:Q9LNK0
ProtClustDB:CLSN2682844 ArrayExpress:Q9LNK0 Genevestigator:Q9LNK0
TIGRFAMs:TIGR01384 Uniprot:Q9LNK0
Length = 106
Score = 103 (41.3 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
EIK + + ++E KD +I E C RC +D + ++Q+RSADE ++ F+
Sbjct: 37 EIKKKQLLVKKSIEAVVTKD--DIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFY 94
Query: 132 TCTKC 136
C KC
Sbjct: 95 RCLKC 99
Score = 42 (19.8 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKT 37
EFC CG +L ++ G+ + + C T
Sbjct: 2 EFCPTCGNLLR-YEGGGNSR-FFCST 25
>TAIR|locus:2120527 [details] [associations]
symbol:AT4G07950 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR006288 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 EMBL:AC006266 EMBL:AL161508 GO:GO:0003899
InterPro:IPR019761 PROSITE:PS01030 KO:K03019 HSSP:Q56254
ProtClustDB:CLSN2682844 TIGRFAMs:TIGR01384 EMBL:AY072451
EMBL:BT000318 IPI:IPI00516216 PIR:A85078 RefSeq:NP_192535.1
UniGene:At.33786 ProteinModelPortal:Q9ZQC0 SMR:Q9ZQC0 IntAct:Q9ZQC0
STRING:Q9ZQC0 EnsemblPlants:AT4G07950.1 GeneID:826299
KEGG:ath:AT4G07950 TAIR:At4g07950 InParanoid:Q9ZQC0 OMA:QMQIRSA
PhylomeDB:Q9ZQC0 Genevestigator:Q9ZQC0 Uniprot:Q9ZQC0
Length = 106
Score = 103 (41.3 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 72 EIKAEYTIHFNTVEKEKQKDKTEIADGPIVERKCKRCNNDTMSYATLQLRSADEGQTIFF 131
EIK + + ++E KD +I E C RC +D + ++Q+RSADE ++ F+
Sbjct: 37 EIKKKQLLVKKSIEPVVTKD--DIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFY 94
Query: 132 TCTKC 136
C KC
Sbjct: 95 RCLKC 99
Score = 41 (19.5 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 12 EFCSKCGTILPLFDFKGDVKCYVCKT 37
EFC CG +L ++ G + + C T
Sbjct: 2 EFCPTCGNLLR-YEGGGSSR-FFCST 25
>POMBASE|SPAC22A12.05 [details] [associations]
symbol:rpc11 "DNA-directed RNA polymerase III complex
subunit Rpc11" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=ISM] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006384
"transcription initiation from RNA polymerase III promoter"
evidence=TAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0042779 "tRNA 3'-trailer cleavage" evidence=IGI;IMP]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 PomBase:SPAC22A12.05
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0005666 GO:GO:0003899
GO:GO:0042779 eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030
HOGENOM:HOG000228131 KO:K03019 EMBL:AF027823 EMBL:AF126532
PIR:T38145 RefSeq:NP_593235.1 ProteinModelPortal:O13896
DIP:DIP-29537N STRING:O13896 EnsemblFungi:SPAC22A12.05.1
GeneID:2541521 KEGG:spo:SPAC22A12.05 OMA:HVEGNAL OrthoDB:EOG469V4B
NextBio:20802619 GO:GO:0006384 Uniprot:O13896
Length = 109
Score = 84 (34.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 107 RCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
+C+N+ + LQ+RSADE + F+ CTKC
Sbjct: 73 KCDNNRAYFFQLQIRSADEPMSTFYRCTKC 102
Score = 36 (17.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 12 EFCSKCGT-ILPLFDFKGDVKCYVCKT 37
+FC CG ++ D +G + C+T
Sbjct: 2 QFCPTCGNHLIVAVDEEGR-NAFDCRT 27
>GENEDB_PFALCIPARUM|PFB0290c [details] [associations]
symbol:PFB0290c "transcription factor, putative"
species:5833 "Plasmodium falciparum" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
GO:GO:0008270 GO:GO:0003700 GO:GO:0003676 GO:GO:0006383
EMBL:AE001362 GO:GO:0005666 GO:GO:0003899 HOGENOM:HOG000228131
KO:K03019 OMA:ITRKVNN HSSP:Q56254 PIR:E71618 RefSeq:XP_001349576.1
ProteinModelPortal:O96159 EnsemblProtists:PFB0290c:mRNA
GeneID:812658 KEGG:pfa:PFB0290c EuPathDB:PlasmoDB:PF3D7_0206600
ProtClustDB:CLSZ2432907 Uniprot:O96159
Length = 106
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C ND + TLQ+RSADE TIF+ C KC
Sbjct: 69 CPKCTNDEAYFYTLQIRSADEPSTIFYICVKC 100
>UNIPROTKB|O96159 [details] [associations]
symbol:PFB0290c "DNA-directed RNA polymerase subunit"
species:36329 "Plasmodium falciparum 3D7" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISS] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 GO:GO:0008270 GO:GO:0003700
GO:GO:0003676 GO:GO:0006383 EMBL:AE001362 GO:GO:0005666
GO:GO:0003899 HOGENOM:HOG000228131 KO:K03019 OMA:ITRKVNN
HSSP:Q56254 PIR:E71618 RefSeq:XP_001349576.1
ProteinModelPortal:O96159 EnsemblProtists:PFB0290c:mRNA
GeneID:812658 KEGG:pfa:PFB0290c EuPathDB:PlasmoDB:PF3D7_0206600
ProtClustDB:CLSZ2432907 Uniprot:O96159
Length = 106
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 105 CKRCNNDTMSYATLQLRSADEGQTIFFTCTKC 136
C +C ND + TLQ+RSADE TIF+ C KC
Sbjct: 69 CPKCTNDEAYFYTLQIRSADEPSTIFYICVKC 100
>WB|WBGene00022309 [details] [associations]
symbol:rpc-11 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 SMART:SM00661 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
eggNOG:COG1594 HOGENOM:HOG000228131 KO:K03019 OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:FO081581 HSSP:Q56254
RefSeq:NP_500076.1 ProteinModelPortal:Q9N4B7 SMR:Q9N4B7
IntAct:Q9N4B7 STRING:Q9N4B7 EnsemblMetazoa:Y77E11A.6 GeneID:176950
KEGG:cel:CELE_Y77E11A.6 UCSC:Y77E11A.6 CTD:176950
WormBase:Y77E11A.6 InParanoid:Q9N4B7 NextBio:894706 Uniprot:Q9N4B7
Length = 108
Score = 77 (32.2 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 88 KQKDKTEIADGP-------IVERKCKRCNNDTMSYATLQLRSADEGQTIFFTC 133
K KD ++ GP + + C C++ + LQ RSADE TIF+ C
Sbjct: 45 KLKDIDDVLGGPGAWANAQVTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRC 97
Score = 37 (18.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 13 FCSKCGTILPL 23
FC +CG +L +
Sbjct: 4 FCPECGCVLQI 14
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.138 0.425 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 136 136 0.00091 102 3 11 22 0.39 31
30 0.45 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 576 (61 KB)
Total size of DFA: 138 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.65u 0.07s 14.72t Elapsed: 00:00:10
Total cpu time: 14.65u 0.07s 14.72t Elapsed: 00:00:10
Start: Thu Aug 15 10:59:16 2013 End: Thu Aug 15 10:59:26 2013