BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4749
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 16 GYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQD 75
GYG T P + GK F I+Y +G +LF ++RI ++ R + +R G
Sbjct: 109 GYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV---HVTRRPVLYFHIRWGFS 165
Query: 76 LSEDERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFST 135
++ V+ V+L + S A+ V ++W +LES YFCF+S ST
Sbjct: 166 ----------KQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLST 215
Query: 136 IGFGDYVSAQAIDYPNSSLYSFWNYIFLILG 166
IG GDYV + + LY +L+LG
Sbjct: 216 IGLGDYVPGEGYNQKFRELYKIGITCYLLLG 246
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRA--LYIRKLLRS 72
+GYG+ A +T G+LF I Y + GI F + L + L LR +I +
Sbjct: 130 IGYGNVALRTDAGRLFCIFYALV----GIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLK 185
Query: 73 GQDLSEDERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVS 132
E R V ML L++ ++ +FV+ E+W+ LE+IYF V+
Sbjct: 186 WHVPPELVR----------VLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVT 235
Query: 133 FSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWL 188
+T+GFGDYV A A +S Y + +++LG + S V+ NWL
Sbjct: 236 LTTVGFGDYV-AGADPRQDSPAYQPLVWFWILLGLAYFAS-------VLTTIGNWL 283
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 16/98 (16%)
Query: 97 LCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYS 156
+ L+V +++I G A F ++ E+WT S+Y+ FV+ +T+G+GDY P++ L
Sbjct: 23 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDY-------SPSTPLGM 73
Query: 157 FWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDM 194
++ ++LG + ++ + + L +LI M
Sbjct: 74 YFTVTLIVLGIATF-------AVAVARLLTFLINREQM 104
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 16/98 (16%)
Query: 97 LCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYS 156
+ L+V +++I G A F ++ E+WT S+Y+ FV+ +T+G+GDY P++ L
Sbjct: 23 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDY-------SPSTPLGM 73
Query: 157 FWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDM 194
++ ++LG ++ +++ L +LI M
Sbjct: 74 YFTVTLIVLGIGTF-------AVAVERLLEFLINREQM 104
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 97 LCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYS 156
+ L+V +++I G A F ++ E+WT S+Y+ FV+ +T+G+GDY P++ L
Sbjct: 13 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYS-------PHTPLGM 63
Query: 157 FWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLI 189
++ ++LG ++ +++ L +LI
Sbjct: 64 YFTCTLIVLGIGTF-------AVAVERLLEFLI 89
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 97 LCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYS 156
+ L+V +++I G A F ++ E+WT S+Y+ FV+ +T+G+GDY P++ L
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYS-------PHTPLGM 56
Query: 157 FWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLI 189
++ ++LG ++ +++ L +LI
Sbjct: 57 YFTCTLIVLGIGTF-------AVAVQRLLEFLI 82
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 97 LCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYS 156
+ L+V +++I G A F ++ E+WT S+Y+ FV+ +T+G+GDY P++ L
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYS-------PHTPLGM 56
Query: 157 FWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLI 189
++ ++LG ++ +++ L +LI
Sbjct: 57 YFTCTLIVLGIGTF-------AVAVERLLEFLI 82
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 16/93 (17%)
Query: 97 LCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYS 156
+ L+V +++I G A F ++ E+WT S+Y+ FV+ +T+G+GDY P + L
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYS-------PRTPLGM 56
Query: 157 FWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLI 189
++ ++LG ++ +++ L +LI
Sbjct: 57 YFTCTLIVLGIGTF-------AVAVERLLEFLI 82
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 16/93 (17%)
Query: 97 LCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYS 156
+ L+V +++I G A F ++ E+WT S+Y+ FV+ + +G+GDY P++ L
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIAAVGYGDYS-------PHTPLGM 56
Query: 157 FWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLI 189
++ ++LG ++ +++ L +LI
Sbjct: 57 YFTCTLIVLGIGTF-------AVAVERLLEFLI 82
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
VGYG +PQT GK+F I+Y F+G G++F
Sbjct: 47 VGYGDFSPQTDFGKIFTILYIFIGI--GLVF 75
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 99 LIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFW 158
L V +I+ + Y E +++++F V+ +T+G+GD+ P + +
Sbjct: 10 LFVLTILTLISGTIFYSTVEGLRPIDALFFSVVTLTTVGYGDFS-------PQTDFGKIF 62
Query: 159 NYIFLILGCSCIYSLFNVTSIVIK 182
+++ +G ++ + ++ ++
Sbjct: 63 TILYIFIGIGLVFGFIHKLAVNVQ 86
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
VGYG+ +PQT GK+F I+Y F+G G++F
Sbjct: 47 VGYGNFSPQTDFGKIFTILYIFIGI--GLVF 75
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
VGYG +PQT GK+F I+Y F+G G++F
Sbjct: 47 VGYGDFSPQTDFGKIFTILYIFIGI--GLVF 75
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 5 LSFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
L F V VGYG +PQT GK+F I+Y F+G G++F
Sbjct: 37 LYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGI--GLVF 75
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 98 CLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSF 157
L V +I+ + Y E ++++YF V+ +T+G+GD+ P +
Sbjct: 9 VLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDF-------SPQTDFGKI 61
Query: 158 WNYIFLILGCSCIYSLFN 175
+ +++ +G ++ +
Sbjct: 62 FTILYIFIGIGLVFGFIH 79
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 5 LSFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
L F V VGYG +PQT GK+F I+Y F+G G++F
Sbjct: 37 LYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGI--GLVF 75
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 32.0 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
VG+G +PQT GK+F I+Y F+G G++F
Sbjct: 47 VGFGDFSPQTDFGKIFTILYIFIGI--GLVF 75
Score = 31.6 bits (70), Expect = 0.68, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 99 LIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFW 158
L V +I+ + Y E ++++YF V+ +T+GFGD+ P + +
Sbjct: 10 LFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGFGDFS-------PQTDFGKIF 62
Query: 159 NYIFLILGCSCIYSLFNVTSIVIK 182
+++ +G ++ + ++ ++
Sbjct: 63 TILYIFIGIGLVFGFIHKLAVNVQ 86
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 113 VYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSF 157
+Y P++N+ E F F+TIG G Q I+ P + +Y +
Sbjct: 169 IYRPHDNYVLKEGDVFAIEPFATIGAG-----QVIEVPPTLIYMY 208
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 113 VYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSF 157
+Y P++N+ E F F+TIG G Q I+ P + +Y +
Sbjct: 169 IYRPHDNYVLKEGDVFAIEPFATIGAG-----QVIEVPPTLIYMY 208
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/98 (16%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 85 LEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSA 144
L WK + V+ L ++ + Y E L+++YF V+ +T+G G++
Sbjct: 19 LRAWKDKEFQVLFVLTFLTLT---SGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNF--- 72
Query: 145 QAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIK 182
P + + +++ +G ++ + ++ ++
Sbjct: 73 ----SPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQ 106
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
VG G+ +PQT GK+F I+Y F+G G++F
Sbjct: 67 VGDGNFSPQTDFGKVFTILYIFIGI--GLVF 95
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
VG G+ +PQT GK+F I+Y F+G G++F
Sbjct: 64 VGAGNFSPQTDFGKIFTILYIFIGI--GLVF 92
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 85 LEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSA 144
L WK + V+ L + +++ + Y E ++++YF V+ +T+G G++
Sbjct: 16 LRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNF--- 69
Query: 145 QAIDYPNSSLYSFWNYIFLILGCSCIYSLFN 175
P + + +++ +G ++ +
Sbjct: 70 ----SPQTDFGKIFTILYIFIGIGLVFGFIH 96
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 85 LEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSA 144
L WK + V+ L + +++ + Y E ++++YF V+ +T+G G++
Sbjct: 16 LRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNF--- 69
Query: 145 QAIDYPNSSLYSFWNYIFLILGCSCIYSLFN 175
P + + +++ +G ++ +
Sbjct: 70 ----EPQTDFGKIFTILYIFIGIGLVFGFIH 96
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
VG G+ PQT GK+F I+Y F+G G++F
Sbjct: 64 VGAGNFEPQTDFGKIFTILYIFIGI--GLVF 92
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
VG G+ +PQT GK+F I+Y F+G G++F
Sbjct: 64 VGNGNFSPQTDFGKIFTILYIFIGI--GLVF 92
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 85 LEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSA 144
L WK + V+ L + +++ + Y E ++++YF V+ +T+G G++
Sbjct: 16 LRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGNGNF--- 69
Query: 145 QAIDYPNSSLYSFWNYIFLILGCSCIYSLFN 175
P + + +++ +G ++ +
Sbjct: 70 ----SPQTDFGKIFTILYIFIGIGLVFGFIH 96
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
VG G+ +PQT GK+F I+Y F+G G++F
Sbjct: 64 VGEGNFSPQTDFGKIFTILYIFIGI--GLVF 92
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 85 LEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSA 144
L WK + V+ L + +++ + Y E ++++YF V+ +T+G G++
Sbjct: 16 LRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGEGNF--- 69
Query: 145 QAIDYPNSSLYSFWNYIFLILGCSCIYSLFN 175
P + + +++ +G ++ +
Sbjct: 70 ----SPQTDFGKIFTILYIFIGIGLVFGFIH 96
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
VG G +PQT GK+F I+Y F+G G++F
Sbjct: 47 VGDGDFSPQTDFGKIFTILYIFIGI--GLVF 75
Score = 28.1 bits (61), Expect = 9.0, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 99 LIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFW 158
L V +I+ + Y E ++++YF V+ +T+G GD+ P + +
Sbjct: 10 LFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGDFS-------PQTDFGKIF 62
Query: 159 NYIFLILGCSCIYSLFNVTSIVIK 182
+++ +G ++ + ++ ++
Sbjct: 63 TILYIFIGIGLVFGFIHKLAVNVQ 86
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
VG G+ +PQT GK+F I+Y F+G G++F
Sbjct: 64 VGDGNFSPQTDFGKIFTILYIFIGI--GLVF 92
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 85 LEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSA 144
L WK + V+ L + +++ + Y E ++++YF V+ +T+G G++
Sbjct: 16 LRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNF--- 69
Query: 145 QAIDYPNSSLYSFWNYIFLILGCSCIYSLFN 175
P + + +++ +G ++ +
Sbjct: 70 ----SPQTDFGKIFTILYIFIGIGLVFGFIH 96
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak
Channel Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak
Channel Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+
Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+
Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
VG G+ +PQT GK+F I+Y F+G G++F
Sbjct: 46 VGDGNFSPQTDFGKIFTILYIFIGI--GLVF 74
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 99 LIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFW 158
+I +VI V++ E Y +++++ V+ +T+G+GD V I +S+ +
Sbjct: 21 MIFVLLVIIIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLF 80
Query: 159 NYIFLILGCSCIYSLF 174
F+ + S I + F
Sbjct: 81 GIAFIGMITSTITNFF 96
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 95 VMLCLIVASIVIAGCASFVYVPYE----NWTYLESIYFCFVSFSTIGFGDYVSAQAIDYP 150
++ C + +++A + F Y+ + ++++ IY+ +T+GFGD Y
Sbjct: 21 LLYCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYL 80
Query: 151 NSSLYSFWNYIFLIL 165
+S+ + IFL++
Sbjct: 81 FASIVTVSGVIFLLI 95
>pdb|1S6J|A Chain A, N-Terminal Region Of The Ca2+-Saturated Calcium Regulatory
Domain (Cld) From Soybean Calcium-Dependent Protein
Kinase- Alpha (Cdpk)
Length = 87
Score = 28.1 bits (61), Expect = 8.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 235 RERNRPLGRICDVVPQADDDSNG---FDENSDGARRLSGELI--SMKDLLTANKV 284
R +G + ++ D D++G FDE DG +R+ EL+ +KDL+ A +
Sbjct: 16 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADI 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,393,449
Number of Sequences: 62578
Number of extensions: 391029
Number of successful extensions: 869
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 821
Number of HSP's gapped (non-prelim): 57
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)