Query psy4749
Match_columns 370
No_of_seqs 250 out of 2086
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 16:38:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4404|consensus 100.0 1.8E-57 4E-62 439.0 18.3 267 3-334 82-350 (350)
2 KOG1418|consensus 100.0 1.7E-29 3.7E-34 247.7 7.2 179 4-185 118-307 (433)
3 PF07885 Ion_trans_2: Ion chan 99.5 3.5E-15 7.6E-20 117.9 2.5 70 107-183 7-79 (79)
4 KOG4404|consensus 99.3 1E-11 2.2E-16 121.6 9.5 71 119-196 78-148 (350)
5 KOG3713|consensus 99.2 6.1E-11 1.3E-15 121.6 8.9 93 94-194 344-443 (477)
6 KOG1418|consensus 99.2 3.7E-11 8E-16 118.2 6.0 65 119-190 113-177 (433)
7 PRK10537 voltage-gated potassi 99.1 1.4E-10 2.9E-15 117.9 8.4 84 120-221 167-251 (393)
8 PF07885 Ion_trans_2: Ion chan 98.9 1E-10 2.3E-15 92.3 -0.3 49 4-52 27-76 (79)
9 KOG1545|consensus 98.8 5.7E-10 1.2E-14 111.1 0.3 91 89-186 355-451 (507)
10 KOG1419|consensus 98.7 2.3E-08 5.1E-13 103.9 5.5 58 120-184 268-325 (654)
11 PLN03192 Voltage-dependent pot 98.4 2.2E-07 4.8E-12 102.1 5.4 55 122-183 251-305 (823)
12 KOG4390|consensus 98.4 2.8E-08 6.2E-13 99.9 -2.1 85 100-191 329-419 (632)
13 KOG1420|consensus 98.3 1.1E-06 2.3E-11 92.2 6.3 68 107-181 261-341 (1103)
14 KOG3713|consensus 98.2 1.5E-06 3.3E-11 89.7 5.8 54 4-57 380-434 (477)
15 KOG1419|consensus 98.1 1.7E-06 3.6E-11 90.4 2.1 46 3-48 271-317 (654)
16 KOG3684|consensus 98.0 3E-06 6.4E-11 86.9 3.1 79 97-182 255-341 (489)
17 PLN03192 Voltage-dependent pot 97.9 4.1E-06 8.9E-11 92.3 2.4 48 5-52 254-302 (823)
18 PRK10537 voltage-gated potassi 97.9 7E-06 1.5E-10 83.8 3.8 45 4-48 171-216 (393)
19 KOG1545|consensus 97.7 1.6E-05 3.5E-10 79.9 2.6 36 4-39 396-432 (507)
20 KOG0498|consensus 97.4 7.1E-05 1.5E-09 81.5 2.8 58 122-186 295-352 (727)
21 KOG3193|consensus 97.2 0.00066 1.4E-08 71.5 7.2 30 119-148 215-244 (1087)
22 KOG1420|consensus 97.2 0.0003 6.5E-09 74.3 4.6 39 4-42 291-330 (1103)
23 KOG0498|consensus 97.2 0.00015 3.3E-09 79.0 2.2 46 4-49 297-343 (727)
24 KOG0501|consensus 97.1 0.00039 8.4E-09 73.7 4.0 57 121-184 423-479 (971)
25 PF01007 IRK: Inward rectifier 97.0 0.00033 7.2E-09 70.3 2.3 56 121-181 84-139 (336)
26 KOG4390|consensus 96.9 0.00012 2.6E-09 74.3 -2.0 37 4-40 359-396 (632)
27 KOG0501|consensus 96.5 0.0023 5E-08 68.0 3.7 45 4-48 426-471 (971)
28 KOG3684|consensus 95.1 0.015 3.3E-07 60.3 3.1 38 10-47 297-334 (489)
29 KOG3827|consensus 94.7 0.13 2.9E-06 52.5 8.4 58 121-183 112-169 (400)
30 PF01007 IRK: Inward rectifier 94.5 0.0061 1.3E-07 61.3 -1.6 50 3-52 86-138 (336)
31 PF00520 Ion_trans: Ion transp 93.9 0.058 1.3E-06 47.0 3.5 54 121-176 145-199 (200)
32 KOG3193|consensus 87.0 1.2 2.5E-05 47.9 5.7 32 4-35 220-252 (1087)
33 KOG0500|consensus 76.1 4.2 9.2E-05 43.1 5.0 50 124-181 186-235 (536)
34 COG0168 TrkG Trk-type K+ trans 74.9 5.7 0.00012 42.2 5.8 58 107-166 410-470 (499)
35 TIGR00933 2a38 potassium uptak 72.2 1.7 3.7E-05 44.2 1.1 43 118-166 345-389 (390)
36 COG0168 TrkG Trk-type K+ trans 71.8 18 0.00038 38.6 8.5 50 118-168 195-244 (499)
37 KOG3676|consensus 69.9 19 0.00042 40.2 8.5 63 121-185 586-651 (782)
38 KOG3827|consensus 68.5 6.8 0.00015 40.4 4.4 37 3-39 114-153 (400)
39 PRK10750 potassium transporter 64.2 11 0.00023 40.1 5.0 49 117-167 202-250 (483)
40 KOG0499|consensus 63.3 8.9 0.00019 41.8 4.2 56 119-182 401-456 (815)
41 PF00060 Lig_chan: Ligand-gate 62.0 4.6 9.9E-05 34.2 1.6 51 121-179 44-94 (148)
42 PF02386 TrkH: Cation transpor 56.3 2.3 5E-05 42.6 -1.5 56 110-166 282-338 (354)
43 PRK10750 potassium transporter 49.1 21 0.00045 37.9 4.2 50 116-167 416-466 (483)
44 TIGR00933 2a38 potassium uptak 43.1 52 0.0011 33.5 5.9 47 120-167 127-173 (390)
45 PRK05482 potassium-transportin 39.2 67 0.0014 35.0 6.1 41 120-167 450-492 (559)
46 KOG4440|consensus 37.6 22 0.00048 39.1 2.3 54 119-179 611-664 (993)
47 KOG1053|consensus 28.0 2.5E+02 0.0055 32.6 8.3 39 138-179 622-660 (1258)
48 KOG0500|consensus 27.5 49 0.0011 35.5 2.7 43 5-48 187-230 (536)
49 KOG1052|consensus 26.5 1.2E+02 0.0027 32.7 5.8 52 120-179 380-431 (656)
50 TIGR00870 trp transient-recept 26.5 1.1E+02 0.0025 33.5 5.5 9 134-142 569-577 (743)
51 KOG2302|consensus 25.6 2.3E+02 0.0049 33.5 7.5 13 130-142 1328-1340(1956)
52 KOG3599|consensus 25.4 5E+02 0.011 29.6 10.3 62 120-190 622-684 (798)
53 PF04694 Corona_3: Coronavirus 23.7 54 0.0012 24.8 1.6 22 121-142 16-46 (60)
54 PF09591 DUF2463: Protein of u 21.8 4.5E+02 0.0097 25.2 7.7 28 101-129 67-95 (210)
No 1
>KOG4404|consensus
Probab=100.00 E-value=1.8e-57 Score=439.03 Aligned_cols=267 Identities=30% Similarity=0.522 Sum_probs=234.7
Q ss_pred eeeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchh
Q psy4749 3 TVLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQDLSEDER 81 (370)
Q Consensus 3 t~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~~i~~~l~~i~r~~~~r~lrr~g~~~~~~~e 81 (370)
+.|+||++| +||||||+.+|.|++||+|||+||++|||+++++|++++||+.++++++++++++++.||
T Consensus 82 ~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~~~~r---------- 151 (350)
T KOG4404|consen 82 AGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRRLGRR---------- 151 (350)
T ss_pred CcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------
Confidence 568999999 999999999999999999999999999999999999999999999999999998876543
Q ss_pred hhccccccchhHHHHHHHHHHHHHHHHhhhhhhccccCCCcccceeeeeEEeeccccccccccCC-CCCCCCcchhhHHH
Q psy4749 82 NESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQA-IDYPNSSLYSFWNY 160 (370)
Q Consensus 82 ~~~l~~wk~sv~~v~Lil~i~~~v~l~~gA~if~~~E~Wsf~dslYF~fvTlTTIGfGDivP~t~-~g~~~~~~yrv~~~ 160 (370)
.|+++++.++++++...++++|+||++|+..|+|+|+||+||||||+|||||||+|+.++ ..++.+++|+++++
T Consensus 152 -----~~~~S~~~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf 226 (350)
T KOG4404|consen 152 -----RWDVSVYNLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSF 226 (350)
T ss_pred -----cCCCcHHHHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhH
Confidence 388999999999999989999999999999999999999999999999999999999987 67889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccccccccccccccccccccccccccccccCCC
Q psy4749 161 IFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRKPPDKTGRVLRRHSIRVQRERERRRRSSITLPKTIRRERNRP 240 (370)
Q Consensus 161 i~il~Gl~l~~~~~~vi~~~i~~~l~~l~~k~~~~cc~~~~~~~~~~~rr~~v~v~gp~~~~~~~~~~~~~~~~~~~~~~ 240 (370)
+||++|+++++.++|++...+.+..+|..+|.+..||..|. ++..+.+|..+++ ++.
T Consensus 227 ~fIL~Gl~vi~a~~NllvLrf~t~~~~~~rr~~~~~~~~~~---------~~~~~~~~~~~~~--------------~~~ 283 (350)
T KOG4404|consen 227 VFILLGLCVIYALLNLLVLRFMTMNAEDERRDEQEACSAAQ---------NARGLGGGDSPRR--------------NNA 283 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHhc---------ccccCCCCCCCCc--------------Ccc
Confidence 99999999999999999999999999999999998887651 1100011111110 010
Q ss_pred CCCcccCCCCCCCCCCCCCCCCccccccccchhhHHHHHHhccchhhhcccchHHHHhhhcCCCCCCCCCCCCCCCCCCC
Q psy4749 241 LGRICDVVPQADDDSNGFDENSDGARRLSGELISMKDLLTANKVSLAVMQKQLYETAQMQREGQAEPWSERRDGKFTPGT 320 (370)
Q Consensus 241 ~~~~~~~~~~~~~e~~~~~~s~~~~r~~~~e~~s~~~~la~~k~~l~~~q~q~~e~a~~~~~~p~~~~~~~~~~~~s~~~ 320 (370)
..|...+|+.+ +|+|..++++.++...|+|+.|..+ +||.. +.++++++++ +|
T Consensus 284 ------------------~~s~~~~~~~~----~~~~~~~~~~~s~~~~~~~~~~~~~---~~~~~-~~~~~~~g~~-~~ 336 (350)
T KOG4404|consen 284 ------------------AASFGCGRRRS----SMRDSVTSSLASCHLRQKQLSECLN---GTPPC-CISSRSPGFH-GG 336 (350)
T ss_pred ------------------ccccccccCCc----cccccccccceeeeeeccccccccc---CCCCc-ccccCCCCCC-CC
Confidence 02555566666 9999999999999999999999999 99999 9999999999 99
Q ss_pred cchhhhhhhhhhhh
Q psy4749 321 VGPLAIINYIVLQV 334 (370)
Q Consensus 321 vg~~~~~~~~~~~~ 334 (370)
++++++||+|.++|
T Consensus 337 ~~~~~~m~~r~~~~ 350 (350)
T KOG4404|consen 337 VGALRIMNIRLSVT 350 (350)
T ss_pred ccccchhcccccCC
Confidence 99999999999875
No 2
>KOG1418|consensus
Probab=99.96 E-value=1.7e-29 Score=247.69 Aligned_cols=179 Identities=22% Similarity=0.384 Sum_probs=122.4
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhc-CC--CCC
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRA--LYIRKLLRS-GQ--DLS 77 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~~i~~~l~~i~r~--~~~r~lrr~-g~--~~~ 77 (370)
.|+||+.| +|||||||++|.|.+||+|||+||++|||+++++++.++..+.+.+..+.+. ...++.+.+ .. +..
T Consensus 118 ~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (433)
T KOG1418|consen 118 SALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYRRRHVELQRDRIRSNLRRSIG 197 (433)
T ss_pred hhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc
Confidence 57899999 9999999999999999999999999999999888877666555555443321 111111110 10 000
Q ss_pred ----cchhhhccccccchhHHHHHHHHHHHHHHHHhhhhhhccccCCCcccceeeeeEEeeccccccccccCCCCCC-CC
Q psy4749 78 ----EDERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYP-NS 152 (370)
Q Consensus 78 ----~~~e~~~l~~wk~sv~~v~Lil~i~~~v~l~~gA~if~~~E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~-~~ 152 (370)
..++......+ .....+..+..+++++..++.++..+|+|+|++|+||||+++|||||||++|.+..++. ..
T Consensus 198 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~ 274 (433)
T KOG1418|consen 198 LRNRSVELGIELLDE---LRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRRE 274 (433)
T ss_pred chhcccccchhhccC---cceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcceeecc
Confidence 00000000100 01112223333455667899999999999999999999999999999999999876533 23
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 153 SLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFL 185 (370)
Q Consensus 153 ~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~~l 185 (370)
..++....+++++|+.++..+.......++...
T Consensus 275 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 307 (433)
T KOG1418|consen 275 ELVDPLASVWILSGLALLALVLLGPDRRLENLL 307 (433)
T ss_pred ccccchhHHHHHhhhhHHHHHhhccccchhhhH
Confidence 345678889999999999998865555555443
No 3
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.52 E-value=3.5e-15 Score=117.91 Aligned_cols=70 Identities=23% Similarity=0.622 Sum_probs=57.3
Q ss_pred HHhhhhhhcc---ccCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 107 AGCASFVYVP---YENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQ 183 (370)
Q Consensus 107 l~~gA~if~~---~E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~ 183 (370)
++.+++++.. .|+|+|.|++||+++|+|||||||++|.++.+ |+++++++++|++++++.++.+...+.|
T Consensus 7 l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~g-------r~~~~~~~~~G~~~~~~~~~~~~~~l~~ 79 (79)
T PF07885_consen 7 LAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAG-------RIFTIIYMLIGIFLFALFLSVLASVLTQ 79 (79)
T ss_dssp HHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccch-------HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555555 67999999999999999999999999998776 9999999999999999999988877753
No 4
>KOG4404|consensus
Probab=99.29 E-value=1e-11 Score=121.64 Aligned_cols=71 Identities=14% Similarity=0.395 Sum_probs=67.8
Q ss_pred CCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy4749 119 NWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFC 196 (370)
Q Consensus 119 ~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~~l~~l~~k~~~~c 196 (370)
.|+|..||||+.+.+||||||+..|.|++| |+|+++|+++|+++...+|+.+++.+...+.+++++.++.+
T Consensus 78 qWkF~GaFYFa~TVItTIGyGhstP~T~~G-------K~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~~ 148 (350)
T KOG4404|consen 78 QWKFAGAFYFATTVITTIGYGHSTPSTDGG-------KAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRRL 148 (350)
T ss_pred ccccCcceEEEEEEEeeeccCCCCCCCcCc-------eehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999 99999999999999999999999999999999999988743
No 5
>KOG3713|consensus
Probab=99.18 E-value=6.1e-11 Score=121.58 Aligned_cols=93 Identities=15% Similarity=0.257 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccc----C---CCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHH
Q psy4749 94 WVMLCLIVASIVIAGCASFVYVPYE----N---WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILG 166 (370)
Q Consensus 94 ~v~Lil~i~~~v~l~~gA~if~~~E----~---Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~G 166 (370)
.+.+.++++++.++++++++|. .| + =|..-++|||.||||||||||++|.|.+| ++++...|+.|
T Consensus 344 ElglLllfL~~GI~iFStlvY~-~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~G-------klvas~cil~G 415 (477)
T KOG3713|consen 344 ELGLLLLFLAVGIVIFSTLVYF-AEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLG-------KLVASLCILCG 415 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhcCCCCCCccccchhheeeEEEeeecccCccccccch-------HHHHHHHHHHh
Confidence 3444444444455567777774 44 1 25578899999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4749 167 CSCIYSLFNVTSIVIKQFLNWLIYEMDM 194 (370)
Q Consensus 167 l~l~~~~~~vi~~~i~~~l~~l~~k~~~ 194 (370)
|.++++.+.+|...+.+.++....+-+.
T Consensus 416 VLvlAlPItiIv~nF~~~y~~~k~~~~~ 443 (477)
T KOG3713|consen 416 VLVLALPITIIVNNFSMYYSELKAREKA 443 (477)
T ss_pred HHHhhcchHhHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999888766555443
No 6
>KOG1418|consensus
Probab=99.15 E-value=3.7e-11 Score=118.15 Aligned_cols=65 Identities=14% Similarity=0.421 Sum_probs=62.2
Q ss_pred CCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 119 NWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIY 190 (370)
Q Consensus 119 ~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~~l~~l~~ 190 (370)
.|+|.+|+|||++++||||||+++|.+..| |+++++|+++|++++..+++.++..+.+.+..+++
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~G-------r~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~ 177 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPRTDAG-------RLFTILYALVGIPLMLLILADIGKFLADSLRKLYR 177 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCCcCcc-------hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999998 99999999999999999999999999998888775
No 7
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.12 E-value=1.4e-10 Score=117.94 Aligned_cols=84 Identities=20% Similarity=0.328 Sum_probs=63.0
Q ss_pred CCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhcccC
Q psy4749 120 WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVT-SIVIKQFLNWLIYEMDMFCCR 198 (370)
Q Consensus 120 Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi-~~~i~~~l~~l~~k~~~~cc~ 198 (370)
|++.||+||+++|+|||||||++|.+..| |+++++++++|+++++..++.+ +..+++.++...++.+
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~g-------rl~~i~~ii~Gi~vf~~~is~i~~p~i~~~l~~~~~~~~----- 234 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESA-------RLFTISVIILGITVFATSISAIFGPVIRGNLKRLVKGRI----- 234 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence 89999999999999999999999999887 9999999999999888776644 3455544443332211
Q ss_pred CCCCCCCcccccccccccccccc
Q psy4749 199 KPPDKTGRVLRRHSIRVQRERER 221 (370)
Q Consensus 199 ~~~~~~~~~~rr~~v~v~gp~~~ 221 (370)
.+..++|++.++|.+..
T Consensus 235 ------~~~~~k~HvII~G~g~l 251 (393)
T PRK10537 235 ------SHMHRKDHFIICGHSPL 251 (393)
T ss_pred ------hhcccCCeEEEECCChH
Confidence 11123577788887764
No 8
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.95 E-value=1e-10 Score=92.29 Aligned_cols=49 Identities=29% Similarity=0.509 Sum_probs=39.9
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLER 52 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~~ 52 (370)
+++||+.+ +|||||||+.|.|++||+++++++++|+++..++++.+.+.
T Consensus 27 da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~ 76 (79)
T PF07885_consen 27 DALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASV 76 (79)
T ss_dssp HHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999 99999999999999999999999999999887766654443
No 9
>KOG1545|consensus
Probab=98.84 E-value=5.7e-10 Score=111.06 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=68.5
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhcccc------CCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHH
Q psy4749 89 KPSVYWVMLCLIVASIVIAGCASFVYVPYE------NWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIF 162 (370)
Q Consensus 89 k~sv~~v~Lil~i~~~v~l~~gA~if~~~E------~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~ 162 (370)
+++...+.|+++++++.++++++++|.... --+..|||||+++|||||||||++|.+..| +++..+.
T Consensus 355 ~aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgG-------KIVGslC 427 (507)
T KOG1545|consen 355 RASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGG-------KIVGSLC 427 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCc-------eehhhHH
Confidence 455555555444444444555666663321 236789999999999999999999999988 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 163 LILGCSCIYSLFNVTSIVIKQFLN 186 (370)
Q Consensus 163 il~Gl~l~~~~~~vi~~~i~~~l~ 186 (370)
++.|+..+++.+.+|...++.+++
T Consensus 428 AiaGVLTiALPVPVIVsNFnyFYh 451 (507)
T KOG1545|consen 428 AIAGVLTIALPVPVIVSNFNYFYH 451 (507)
T ss_pred hhhhheEecccccEEEecccceee
Confidence 999999999999888877755443
No 10
>KOG1419|consensus
Probab=98.66 E-value=2.3e-08 Score=103.88 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=52.7
Q ss_pred CCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 120 WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQF 184 (370)
Q Consensus 120 Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~~ 184 (370)
-+|-||+||..||+|||||||.+|.++.| |++..+|.++|++.+++.-.+++.-+.-.
T Consensus 268 ~TyADALWWG~ITltTIGYGDk~P~TWlG-------r~laa~fsligiSFFALPAGILGSGfALK 325 (654)
T KOG1419|consen 268 PTYADALWWGVITLTTIGYGDKTPQTWLG-------RLLAACFSLIGISFFALPAGILGSGFALK 325 (654)
T ss_pred hhHHHHHHhhheeEEeeccCCcCcccchh-------HHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 38899999999999999999999999998 99999999999999999888888766433
No 11
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.42 E-value=2.2e-07 Score=102.15 Aligned_cols=55 Identities=16% Similarity=0.495 Sum_probs=49.1
Q ss_pred cccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 122 YLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQ 183 (370)
Q Consensus 122 f~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~ 183 (370)
|+.|+||+++|+|||||||++|.+..+ ++++++++++|+.++++.++.++..+.+
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E-------~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIE-------MIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455899999999999999999999887 9999999999999999988888876643
No 12
>KOG4390|consensus
Probab=98.39 E-value=2.8e-08 Score=99.92 Aligned_cols=85 Identities=14% Similarity=0.218 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhhhhhccccC------CCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q psy4749 100 IVASIVIAGCASFVYVPYEN------WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSL 173 (370)
Q Consensus 100 ~i~~~v~l~~gA~if~~~E~------Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~ 173 (370)
+-+.+.+++++.+||+...+ -+...||||+++|+||.||||+||.+-.| ++|..+.-+-|+.++++.
T Consensus 329 FSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaG-------KIfGsiCSLSGVLVIALP 401 (632)
T KOG4390|consen 329 FSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAG-------KIFGSICSLSGVLVIALP 401 (632)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHH-------HHhhhhhcccceEEEecc
Confidence 33444556677788754332 25578899999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy4749 174 FNVTSIVIKQFLNWLIYE 191 (370)
Q Consensus 174 ~~vi~~~i~~~l~~l~~k 191 (370)
+.+|...+.+.+++..+-
T Consensus 402 VPvIVSNFSRIYHQNQRA 419 (632)
T KOG4390|consen 402 VPVIVSNFSRIYHQNQRA 419 (632)
T ss_pred ccEEEechhHHHhhhhhh
Confidence 999999999888876543
No 13
>KOG1420|consensus
Probab=98.29 E-value=1.1e-06 Score=92.24 Aligned_cols=68 Identities=26% Similarity=0.427 Sum_probs=57.0
Q ss_pred HHhhhhhhcccc----CC---------CcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q psy4749 107 AGCASFVYVPYE----NW---------TYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSL 173 (370)
Q Consensus 107 l~~gA~if~~~E----~W---------sf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~ 173 (370)
+..+|.+.+..| .| +|+|++||-.+|++||||||++-.+..| |.|.++|++.|++++++.
T Consensus 261 wltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lg-------rlfmvffil~glamfasy 333 (1103)
T KOG1420|consen 261 WLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLG-------RLFMVFFILGGLAMFASY 333 (1103)
T ss_pred HHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhh-------HHHHHHHHHHHHHHHHhh
Confidence 345666767666 23 7899999999999999999999998888 999999999999999887
Q ss_pred HHHHHHHH
Q psy4749 174 FNVTSIVI 181 (370)
Q Consensus 174 ~~vi~~~i 181 (370)
+.-|.+.+
T Consensus 334 vpeiieli 341 (1103)
T KOG1420|consen 334 VPEIIELI 341 (1103)
T ss_pred hHHHHHHH
Confidence 77666655
No 14
>KOG3713|consensus
Probab=98.22 E-value=1.5e-06 Score=89.69 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=42.1
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLL 57 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~~i~~~l 57 (370)
.++||+.+ +|||||||++|+|..||++.-.-++.||-...+.+..+.++..++.
T Consensus 380 a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y 434 (477)
T KOG3713|consen 380 AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYY 434 (477)
T ss_pred chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHH
Confidence 46789988 9999999999999999999999999998554444444445544443
No 15
>KOG1419|consensus
Probab=98.05 E-value=1.7e-06 Score=90.39 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=39.2
Q ss_pred eeeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHH
Q psy4749 3 TVLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNL 48 (370)
Q Consensus 3 t~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l 48 (370)
..|+||... +|||||||.+|.|..||++..+|+||||..+.+.-+.
T Consensus 271 ADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGI 317 (654)
T KOG1419|consen 271 ADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGI 317 (654)
T ss_pred HHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhccccc
Confidence 357889766 9999999999999999999999999999866554433
No 16
>KOG3684|consensus
Probab=98.02 E-value=3e-06 Score=86.92 Aligned_cols=79 Identities=24% Similarity=0.362 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhhhhhcccc--------CCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHH
Q psy4749 97 LCLIVASIVIAGCASFVYVPYE--------NWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCS 168 (370)
Q Consensus 97 Lil~i~~~v~l~~gA~if~~~E--------~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~ 168 (370)
.+++++.+.++++.++++..-| .-+|.+++|+..+||-+|||||+||.|.-| |.++++-.++|.+
T Consensus 255 ~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycG-------r~v~l~tGivGa~ 327 (489)
T KOG3684|consen 255 TVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCG-------RGVALLTGIVGAG 327 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCcccc-------chHHHHhhhhhhh
Confidence 3455666677788888887666 235899999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy4749 169 CIYSLFNVTSIVIK 182 (370)
Q Consensus 169 l~~~~~~vi~~~i~ 182 (370)
+.++++++++..++
T Consensus 328 ~sallvAvisRKLe 341 (489)
T KOG3684|consen 328 CSSLLVAVIARKLE 341 (489)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998773
No 17
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=97.93 E-value=4.1e-06 Score=92.27 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=42.4
Q ss_pred eEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHHH
Q psy4749 5 LSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLER 52 (370)
Q Consensus 5 a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~~ 52 (370)
++||+.+ +|||||||++|.|..+|+|+|++.++|+.++...++.+.+-
T Consensus 254 slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~l 302 (823)
T PLN03192 254 AIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNL 302 (823)
T ss_pred HHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999988 99999999999999999999999999998877766665443
No 18
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.92 E-value=7e-06 Score=83.78 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=39.5
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNL 48 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l 48 (370)
+|+||+.+ +||+||||+.|.|..||+|++++.++|+.++...++.
T Consensus 171 dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~ 216 (393)
T PRK10537 171 TAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISA 216 (393)
T ss_pred HHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899988 9999999999999999999999999998766554443
No 19
>KOG1545|consensus
Probab=97.73 E-value=1.6e-05 Score=79.86 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=34.0
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhch
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGC 39 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGI 39 (370)
+++||+.+ +|||||||+.|.|.+||+.--+.|+.|+
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGV 432 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGV 432 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhh
Confidence 68999988 9999999999999999999999999996
No 20
>KOG0498|consensus
Probab=97.44 E-value=7.1e-05 Score=81.53 Aligned_cols=58 Identities=14% Similarity=0.385 Sum_probs=51.7
Q ss_pred cccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 122 YLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLN 186 (370)
Q Consensus 122 f~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~~l~ 186 (370)
|+-|+||++.++||+||||..|.+..- ++|+++++++|+.+.++++..++..|.....
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E-------~iFsi~~mi~GllL~A~lIGNmt~~iqs~ts 352 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGE-------KIFSIFIMLFGLLLFAYLIGNMTALLQSLTS 352 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHH-------HHHHHHHHHHhHHHHHHHHhhHHHhHHHHhH
Confidence 345899999999999999999998766 9999999999999999999999988866554
No 21
>KOG3193|consensus
Probab=97.25 E-value=0.00066 Score=71.50 Aligned_cols=30 Identities=33% Similarity=0.669 Sum_probs=27.0
Q ss_pred CCCcccceeeeeEEeeccccccccccCCCC
Q psy4749 119 NWTYLESIYFCFVSFSTIGFGDYVSAQAID 148 (370)
Q Consensus 119 ~Wsf~dslYF~fvTlTTIGfGDivP~t~~g 148 (370)
..+.+.++||.++||+||||||.+|.-++.
T Consensus 215 ~i~lf~s~y~v~vtfstvgygd~~pd~w~s 244 (1087)
T KOG3193|consen 215 RIDLFTSFYFVMVTFSTVGYGDWYPDYWAS 244 (1087)
T ss_pred eeeeeeeEEEEEEEEeeccccccccccchh
Confidence 468899999999999999999999987654
No 22
>KOG1420|consensus
Probab=97.24 E-value=0.0003 Score=74.32 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=35.4
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGG 42 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~ 42 (370)
+.+||..+ ++|+||||+..+|..||+|.+||-|.|.+.+
T Consensus 291 ~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamf 330 (1103)
T KOG1420|consen 291 ECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMF 330 (1103)
T ss_pred heeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHH
Confidence 56899888 9999999999999999999999999997543
No 23
>KOG0498|consensus
Probab=97.22 E-value=0.00015 Score=78.99 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=41.2
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLF 49 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~ 49 (370)
.++||+.+ +||+|||+.+|.+..=++|+|+|.++|.-++.++++++
T Consensus 297 ~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNm 343 (727)
T KOG0498|consen 297 YALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNM 343 (727)
T ss_pred HHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhH
Confidence 57899999 99999999999999999999999999987776666653
No 24
>KOG0501|consensus
Probab=97.12 E-value=0.00039 Score=73.66 Aligned_cols=57 Identities=23% Similarity=0.590 Sum_probs=46.9
Q ss_pred CcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 121 TYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQF 184 (370)
Q Consensus 121 sf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~~ 184 (370)
-|+.|+||+++++||||||.+.|.++.- ++|.+..+++|-.+-+..|.-+..++.|.
T Consensus 423 ~YissLYfTMt~mttvGFGNiA~~TD~E-------KiF~v~mMii~aLLYAtIFG~vTTI~QQM 479 (971)
T KOG0501|consen 423 AYISSLYFTMTCMTTVGFGNIAPNTDNE-------KIFGVCMMIIGALLYATIFGHVTTIIQQM 479 (971)
T ss_pred eehhhhhhhhhhhhcccccccCCCccHH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3778999999999999999999999876 89999989998877666666555555443
No 25
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.02 E-value=0.00033 Score=70.31 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=37.9
Q ss_pred CcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 121 TYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVI 181 (370)
Q Consensus 121 sf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i 181 (370)
+|.++|+|++-|+||||||...|... .+..-++..+-+++|+.+.+.++.++-..+
T Consensus 84 ~f~~aF~FSveT~tTIGYG~~~~~~~-----c~~a~~l~~~q~~~g~l~~a~~~Glvfar~ 139 (336)
T PF01007_consen 84 SFTSAFLFSVETQTTIGYGSRYPTPE-----CPYAIFLVTIQSLVGLLLDAFMTGLVFARF 139 (336)
T ss_dssp THHHHHHHHHHHHTT---SSSEB-CS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhheeEEEEEEEEeccCCcccCCC-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999544322 112256667788888888777666665555
No 26
>KOG4390|consensus
Probab=96.89 E-value=0.00012 Score=74.31 Aligned_cols=37 Identities=24% Similarity=0.484 Sum_probs=33.1
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchh
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCS 40 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIP 40 (370)
+|+|++.+ +||.||||+.|+|.+||+|--+.+|-|+-
T Consensus 359 aaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVL 396 (632)
T KOG4390|consen 359 AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVL 396 (632)
T ss_pred HhHhhheeeeeeccccccchHHHHHHHhhhhhcccceE
Confidence 46777777 99999999999999999999999998874
No 27
>KOG0501|consensus
Probab=96.46 E-value=0.0023 Score=68.02 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=38.8
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNL 48 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l 48 (370)
.++||+.| +|||||||++|.|+.-|+|.+.--+||--+...+|+.
T Consensus 426 ssLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~ 471 (971)
T KOG0501|consen 426 SSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGH 471 (971)
T ss_pred hhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999 9999999999999999999999999986655555554
No 28
>KOG3684|consensus
Probab=95.14 E-value=0.015 Score=60.29 Aligned_cols=38 Identities=24% Similarity=0.440 Sum_probs=32.5
Q ss_pred eeeeceecCCCccCCccchhhHhHHhhhchhhHHHHHH
Q psy4749 10 ELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFN 47 (370)
Q Consensus 10 ~TiTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~ 47 (370)
.|+-+|||||+.|.|..||.+|++=|.+|--++.++.+
T Consensus 297 iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvA 334 (489)
T KOG3684|consen 297 ITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVA 334 (489)
T ss_pred HHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHH
Confidence 34788999999999999999999999999876655543
No 29
>KOG3827|consensus
Probab=94.70 E-value=0.13 Score=52.49 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=42.6
Q ss_pred CcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 121 TYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQ 183 (370)
Q Consensus 121 sf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~ 183 (370)
+|..||-|++-|=||||||--+++.. -|...+..++..++|+.+=+..+..+-..+.+
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTee-----CP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEE-----CPEAIFLLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCcc-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67889999999999999999988754 23345666677778877666655555555543
No 30
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=94.50 E-value=0.0061 Score=61.29 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=34.8
Q ss_pred eeeEEEEee-eeceecCC--CccCCccchhhHhHHhhhchhhHHHHHHHHHHH
Q psy4749 3 TVLSFWVEL-NYKVGYGS--TAPQTTPGKLFVIVYGFLGCSGGILFFNLFLER 52 (370)
Q Consensus 3 t~a~yf~~T-iTTIGYGd--iaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~~ 52 (370)
+.|+||+.- .||||||. ++|..+.|-+++++=+++|+-+..++.+++..|
T Consensus 86 ~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar 138 (336)
T PF01007_consen 86 TSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFAR 138 (336)
T ss_dssp HHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788877 99999998 789999999999999999975554444444333
No 31
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=93.89 E-value=0.058 Score=47.01 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=34.7
Q ss_pred CcccceeeeeEEeeccccccccccCCCCCCCCcchhhHH-HHHHHHHHHHHHHHHHH
Q psy4749 121 TYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWN-YIFLILGCSCIYSLFNV 176 (370)
Q Consensus 121 sf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~-~i~il~Gl~l~~~~~~v 176 (370)
+|..|+|+.+.++||.|+||..|.... ..+....++. .+.++.++.++.+++++
T Consensus 145 ~~~~s~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 145 SFGESLYWLFQTMTGEGWGDVMPSCMS--ARSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCHHHHHH--TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCcccccccccc--ccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 678999999999999999999997210 0112224444 44444444555555554
No 32
>KOG3193|consensus
Probab=86.97 E-value=1.2 Score=47.90 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=26.6
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHh
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYG 35 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~Ya 35 (370)
+.+||+.+ ++|+||||..|.-.+.++..++.-
T Consensus 220 ~s~y~v~vtfstvgygd~~pd~w~sql~~vi~i 252 (1087)
T KOG3193|consen 220 TSFYFVMVTFSTVGYGDWYPDYWASQLCVVILI 252 (1087)
T ss_pred eeEEEEEEEEeeccccccccccchhhHHHHHHH
Confidence 46789888 999999999999988887665543
No 33
>KOG0500|consensus
Probab=76.09 E-value=4.2 Score=43.12 Aligned_cols=50 Identities=12% Similarity=0.226 Sum_probs=33.7
Q ss_pred cceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 124 ESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVI 181 (370)
Q Consensus 124 dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i 181 (370)
-|+|||-.|+||||= --.|.++.. -.|.++=.++|+.+++..+.-++..+
T Consensus 186 ~S~YWStLTlTTiGe-~P~P~t~~e-------y~F~I~d~LiGvliFAtIvG~VGsmV 235 (536)
T KOG0500|consen 186 YSLYWSTLTLTTIGE-QPPPVTSSE-------YAFVIVDTLIGVLIFATIVGNVGSMV 235 (536)
T ss_pred HHHHHHhhhhhhccC-CCCCCcCch-------hhHHHHHHHHHHHHHhhhhccHhHHH
Confidence 389999999999982 223444432 35666777888888777665555443
No 34
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=74.87 E-value=5.7 Score=42.24 Aligned_cols=58 Identities=9% Similarity=0.228 Sum_probs=35.2
Q ss_pred HHhhhhhhcccc-CCCcccceeeeeEEeeccccccccccC--CCCCCCCcchhhHHHHHHHHH
Q psy4749 107 AGCASFVYVPYE-NWTYLESIYFCFVSFSTIGFGDYVSAQ--AIDYPNSSLYSFWNYIFLILG 166 (370)
Q Consensus 107 l~~gA~if~~~E-~Wsf~dslYF~fvTlTTIGfGDivP~t--~~g~~~~~~yrv~~~i~il~G 166 (370)
+++++++....| + +++|+++=.+.++.|||.|=-++.. .... .++.-|+..++-+++|
T Consensus 410 ~~i~~~~l~~~~~~-~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~-~~~~~K~vli~~M~~G 470 (499)
T COG0168 410 LIIGALILILTGYD-PFIDALFEVVSAFGTVGLSLGITGDLASNFA-LPPLAKLVLIALMLIG 470 (499)
T ss_pred HHHHHHHHHHhcCc-cHHHHHHHHHHHhhcCCCCCCCCCCCccccc-cCchHHHHHHHHHHhh
Confidence 344444444444 4 8999999999999999986544432 2121 2333366555555555
No 35
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=72.15 E-value=1.7 Score=44.24 Aligned_cols=43 Identities=14% Similarity=0.353 Sum_probs=29.3
Q ss_pred cCCCcccceeeeeEEeecccccccc--ccCCCCCCCCcchhhHHHHHHHHH
Q psy4749 118 ENWTYLESIYFCFVSFSTIGFGDYV--SAQAIDYPNSSLYSFWNYIFLILG 166 (370)
Q Consensus 118 E~Wsf~dslYF~fvTlTTIGfGDiv--P~t~~g~~~~~~yrv~~~i~il~G 166 (370)
.+.++.|+++=+.-+++|||.+=-. |. -++..|++.++.+++|
T Consensus 345 ~~~~~~~~~fe~~Sa~~tvGls~g~~~~~------l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 345 SGYDFLTSLFEVVSAFGTVGLSVGLTTAN------LPDAGKLILIVLMFIG 389 (390)
T ss_pred cCCCHHHHHHHHHHHhcCcCCCCCCCccc------CCHHHHHHHHHHHHcC
Confidence 3789999999999999999985433 22 1233466666555544
No 36
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=71.78 E-value=18 Score=38.61 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=35.1
Q ss_pred cCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHH
Q psy4749 118 ENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCS 168 (370)
Q Consensus 118 E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~ 168 (370)
.+-+++||++-++.+++|=||- ..+.+-..++.++.-.+...+++++|=.
T Consensus 195 ~gm~~~dAi~hs~Sa~~ngGFS-~~~~Si~~f~~~~~i~~i~~~liI~Ggi 244 (499)
T COG0168 195 AGMPLFDAIFHSMSAFNNGGFS-THDASIGYFNGSPLINLIITILIILGGI 244 (499)
T ss_pred ccCCHHHHHHHHHHHhhcCCCC-CCcchhhhcccChhHHHHHHHHHHHhcC
Confidence 4567789999999999999997 6666555555455555566666666543
No 37
>KOG3676|consensus
Probab=69.94 E-value=19 Score=40.22 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=38.1
Q ss_pred CcccceeeeeEEe--eccccccccccCCCCCCCCcchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy4749 121 TYLESIYFCFVSF--STIGFGDYVSAQAIDYPNSSLYSFWNYIFL-ILGCSCIYSLFNVTSIVIKQFL 185 (370)
Q Consensus 121 sf~dslYF~fvTl--TTIGfGDivP~t~~g~~~~~~yrv~~~i~i-l~Gl~l~~~~~~vi~~~i~~~l 185 (370)
+..|++.-.+.++ .|||+||+.-..+.. +...++++.++|+ ++-|.++-++++.++....+..
T Consensus 586 ~~~ds~~~~~l~lf~ftig~~dl~~~~~~~--~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va 651 (782)
T KOG3676|consen 586 NPYDSFSTFLLTLFEFTIGMGDLEACENTD--YPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVA 651 (782)
T ss_pred ChhhHHHHHHHHHHHHhhhhhhhhhccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3456655555555 699999998766543 2334454444444 3445566677777777665544
No 38
>KOG3827|consensus
Probab=68.49 E-value=6.8 Score=40.42 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=26.0
Q ss_pred eeeEEEEee-eeceecCC--CccCCccchhhHhHHhhhch
Q psy4749 3 TVLSFWVEL-NYKVGYGS--TAPQTTPGKLFVIVYGFLGC 39 (370)
Q Consensus 3 t~a~yf~~T-iTTIGYGd--iaP~T~~GKlf~I~YaLiGI 39 (370)
+.||.|+.- =||||||. ++..=+.+=++.++=+++|+
T Consensus 114 ~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ 153 (400)
T KOG3827|consen 114 TSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGV 153 (400)
T ss_pred hhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHH
Confidence 467788877 99999995 45555666666666666664
No 39
>PRK10750 potassium transporter; Provisional
Probab=64.23 E-value=11 Score=40.06 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=31.6
Q ss_pred ccCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHH
Q psy4749 117 YENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGC 167 (370)
Q Consensus 117 ~E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl 167 (370)
..+-+++||+..++.+++|=||.-.- .+ .++.+++...+..++++++|-
T Consensus 202 ~~Gm~~fdAi~ha~saisTgGFs~~~-~s-i~~~~~~~i~~v~~~~milgg 250 (483)
T PRK10750 202 FAGMDAFDAIGHSFSTIAIGGFSTHD-AS-IGYFDSPTINTIIAIFLLISG 250 (483)
T ss_pred HcCCcHHHHHHHHHHHHhccCcCCCc-cc-cccccCHHHHHHHHHHHHHHH
Confidence 34788999999999999999985432 22 233334444455555555553
No 40
>KOG0499|consensus
Probab=63.35 E-value=8.9 Score=41.83 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=41.5
Q ss_pred CCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 119 NWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIK 182 (370)
Q Consensus 119 ~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~ 182 (370)
|-.|+-++||+.-|++||| |.--|.+..- -+|..+--++|+-++++++.-|.+++.
T Consensus 401 Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E-------~Vf~~~~w~mGVFvFslliGQmRDvi~ 456 (815)
T KOG0499|consen 401 GNEYIRCYYFAVKTLITIG-GLPEPQTLFE-------IVFQLLNWFMGVFVFSLLIGQMRDVIG 456 (815)
T ss_pred CCceeeehhhHHHHHHHhc-CCCCcchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999 6666654321 344445556799999998888877763
No 41
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=62.05 E-value=4.6 Score=34.23 Aligned_cols=51 Identities=8% Similarity=0.008 Sum_probs=33.1
Q ss_pred CcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 121 TYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSI 179 (370)
Q Consensus 121 sf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~ 179 (370)
++.+++|+++-++.. +-++..|.+..+ |++.++|.++.+.+++...+.+..
T Consensus 44 ~~~~~~~~~~~~~~~-q~~~~~~~s~s~-------Ril~~~w~l~~lil~~~Yta~L~s 94 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQ-QGSSIRPRSWSG-------RILLAFWWLFSLILIASYTANLTS 94 (148)
T ss_dssp HHHHHHHHCCCCCHH-HHH------HHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhcc-ccccccccchHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999888877 667788887776 999998888887776654443333
No 42
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=56.32 E-value=2.3 Score=42.59 Aligned_cols=56 Identities=9% Similarity=0.293 Sum_probs=27.2
Q ss_pred hhhhhccccCCC-cccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHH
Q psy4749 110 ASFVYVPYENWT-YLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILG 166 (370)
Q Consensus 110 gA~if~~~E~Ws-f~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~G 166 (370)
++.+....+... +.|+++=+..+++|||.+=-.+..+... ..+.-|++.++.+++|
T Consensus 282 ~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~-~~~~~K~vli~~M~~G 338 (354)
T PF02386_consen 282 STLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSF-SGPFSKLVLIFLMLLG 338 (354)
T ss_dssp HHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SS-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccc-hhhHHHHHHHHHHHHh
Confidence 344444434333 6899999999999999865443221110 0123566666666665
No 43
>PRK10750 potassium transporter; Provisional
Probab=49.07 E-value=21 Score=37.88 Aligned_cols=50 Identities=8% Similarity=0.043 Sum_probs=31.0
Q ss_pred cccCCCcccceeeeeEEeeccccccc-cccCCCCCCCCcchhhHHHHHHHHHH
Q psy4749 116 PYENWTYLESIYFCFVSFSTIGFGDY-VSAQAIDYPNSSLYSFWNYIFLILGC 167 (370)
Q Consensus 116 ~~E~Wsf~dslYF~fvTlTTIGfGDi-vP~t~~g~~~~~~yrv~~~i~il~Gl 167 (370)
..++.++.+|+.-+..++++||.|=- ++.+.+ +-++..|++.++-+++|=
T Consensus 416 ~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~--~l~~~~K~il~~~MllGR 466 (483)
T PRK10750 416 IATGVDDFSAFASVVATLNNLGPGLGVVADNFT--SMNPVAKWILIANMLFGR 466 (483)
T ss_pred HHcCCcHHHHHHHHHHHhcCCCCCchhhccccc--cCCHHHHHHHHHHHHHHH
Confidence 44567888999888888888887432 211111 122345777777777773
No 44
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=43.13 E-value=52 Score=33.50 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=28.2
Q ss_pred CCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHH
Q psy4749 120 WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGC 167 (370)
Q Consensus 120 Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl 167 (370)
-+++||++.++.+++|=||.-.-.+.. ++..++...+..++++++|=
T Consensus 127 ~~~~~Aif~avSa~~taGFs~~~~~~~-~~~~~~~i~~v~~~lm~iGg 173 (390)
T TIGR00933 127 MPLFDAIFHSISAFNNGGFSTHSDSSI-GYFHDPSVNLVIAFLIILGG 173 (390)
T ss_pred hHHHHHHHHHHHHHhcCCcCCCCCcch-hhccChHHHHHHHHHHHHHh
Confidence 478999999999999999854432111 12223333444445555553
No 45
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=39.16 E-value=67 Score=34.95 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=30.6
Q ss_pred CCcccceeeeeEEeecccc--ccccccCCCCCCCCcchhhHHHHHHHHHH
Q psy4749 120 WTYLESIYFCFVSFSTIGF--GDYVSAQAIDYPNSSLYSFWNYIFLILGC 167 (370)
Q Consensus 120 Wsf~dslYF~fvTlTTIGf--GDivP~t~~g~~~~~~yrv~~~i~il~Gl 167 (370)
..|.|.+|=..-.+.|+|. |++.+.+ +++++...+.+++|=
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t-------~~~niil~~~M~iGR 492 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANT-------PFWNLTLGIAMLLGR 492 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCC-------HHHHHHHHHHHHHHH
Confidence 6899999999999999986 4455543 455877777777763
No 46
>KOG4440|consensus
Probab=37.57 E-value=22 Score=39.12 Aligned_cols=54 Identities=7% Similarity=0.097 Sum_probs=43.6
Q ss_pred CCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 119 NWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSI 179 (370)
Q Consensus 119 ~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~ 179 (370)
..++.+|+||+.-.+---|-|+-.|.+-.. |++.++|+-+.+.++++..+.+..
T Consensus 611 alnlssAmWF~WGVLLNSGigEgtPRSfSA-------RvLGmVWaGFaMIiVASYTANLAA 664 (993)
T KOG4440|consen 611 ALNLSSAMWFSWGVLLNSGIGEGTPRSFSA-------RVLGMVWAGFAMIIVASYTANLAA 664 (993)
T ss_pred hcchhhhHHHHhHhhhccccCCCCCcchhH-------HHHHHHHhhhheeeehhhhhhhhh
Confidence 468899999999888888888989998766 999999998877777765554443
No 47
>KOG1053|consensus
Probab=27.96 E-value=2.5e+02 Score=32.63 Aligned_cols=39 Identities=8% Similarity=0.096 Sum_probs=29.6
Q ss_pred cccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 138 FGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSI 179 (370)
Q Consensus 138 fGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~ 179 (370)
|+..||..++- ...-|+.+.+|+++++.++++-.+.+..
T Consensus 622 FnnsVpv~nPK---gtTskiMv~VWAfFavifLAsYTANLAA 660 (1258)
T KOG1053|consen 622 FNNSVPVENPK---GTTSKIMVLVWAFFAVIFLASYTANLAA 660 (1258)
T ss_pred hCCCcCCCCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889987653 3455899999999999988876654443
No 48
>KOG0500|consensus
Probab=27.46 E-value=49 Score=35.47 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=34.1
Q ss_pred eEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHH
Q psy4749 5 LSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNL 48 (370)
Q Consensus 5 a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l 48 (370)
.+||++- +|||| ---+|.|..--+|.|+=-|+|+-++..+++.
T Consensus 187 S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~ 230 (536)
T KOG0500|consen 187 SLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGN 230 (536)
T ss_pred HHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhcc
Confidence 4799877 99998 4568999999999999999997554444443
No 49
>KOG1052|consensus
Probab=26.54 E-value=1.2e+02 Score=32.70 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=32.7
Q ss_pred CCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 120 WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSI 179 (370)
Q Consensus 120 Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~ 179 (370)
|+...++|+++.++..-|- |..|....+ |++..+|.++++.++....+.+..
T Consensus 380 ~~~~~~~~~~~~~~~~q~~-~~~p~~~~~-------Rll~~~w~~~~lil~ssYTa~L~a 431 (656)
T KOG1052|consen 380 FSLLNCLWLTVGSLLQQGS-DEIPRSLST-------RLLLGAWWLFVLILISSYTANLTA 431 (656)
T ss_pred eecccchhhhhHHHhccCC-Cccccchhh-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555553 377777766 898889999988666554443333
No 50
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=26.48 E-value=1.1e+02 Score=33.51 Aligned_cols=9 Identities=44% Similarity=0.970 Sum_probs=6.6
Q ss_pred ecccccccc
Q psy4749 134 STIGFGDYV 142 (370)
Q Consensus 134 TTIGfGDiv 142 (370)
+++|.+|+.
T Consensus 569 ~~~G~~~~~ 577 (743)
T TIGR00870 569 AIIGLGDLL 577 (743)
T ss_pred HHcCCcccc
Confidence 468888873
No 51
>KOG2302|consensus
Probab=25.58 E-value=2.3e+02 Score=33.55 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=6.0
Q ss_pred eEEeecccccccc
Q psy4749 130 FVSFSTIGFGDYV 142 (370)
Q Consensus 130 fvTlTTIGfGDiv 142 (370)
|+-.|-=|.-++.
T Consensus 1328 FvLaSkDgWv~Im 1340 (1956)
T KOG2302|consen 1328 FVLASKDGWVNIM 1340 (1956)
T ss_pred HHHhcccchhhhh
Confidence 4444444544443
No 52
>KOG3599|consensus
Probab=25.45 E-value=5e+02 Score=29.65 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=30.8
Q ss_pred CCcccceeeeeEEeeccccccccccCCCCCCCCcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 120 WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFW-NYIFLILGCSCIYSLFNVTSIVIKQFLNWLIY 190 (370)
Q Consensus 120 Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~-~~i~il~Gl~l~~~~~~vi~~~i~~~l~~l~~ 190 (370)
|+|.+|+ .|..-.=.||.-|.+-.. .-+++ .+.|++..+.+..+++|+....|...++...+
T Consensus 622 ~~f~~s~----~t~~~~~~G~~~~~~i~~-----~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~ 684 (798)
T KOG3599|consen 622 RTFVASI----VTLLRYILGDFCPAEIFH-----ANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKA 684 (798)
T ss_pred HHHHHHH----HHHHHHHhccCCcccccc-----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Confidence 4555554 333333347777764311 11333 33444455555566677666666555554433
No 53
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=23.73 E-value=54 Score=24.80 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=16.1
Q ss_pred CcccceeeeeE---------Eeecccccccc
Q psy4749 121 TYLESIYFCFV---------SFSTIGFGDYV 142 (370)
Q Consensus 121 sf~dslYF~fv---------TlTTIGfGDiv 142 (370)
+-+|..||+++ -+--|||||..
T Consensus 16 deld~~yfavtlkvef~tgkllVcigFGDTl 46 (60)
T PF04694_consen 16 DELDCAYFAVTLKVEFKTGKLLVCIGFGDTL 46 (60)
T ss_pred hhhcceeEEEEEEEEEecCcEEEEEecchHH
Confidence 44788999876 34569999965
No 54
>PF09591 DUF2463: Protein of unknown function (DUF2463); InterPro: IPR019081 This protein is found in eukaryotic, parasitic microsporidia. Its function is unknown.
Probab=21.81 E-value=4.5e+02 Score=25.21 Aligned_cols=28 Identities=14% Similarity=0.521 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhhhhccccCCCcccc-eeee
Q psy4749 101 VASIVIAGCASFVYVPYENWTYLES-IYFC 129 (370)
Q Consensus 101 i~~~v~l~~gA~if~~~E~Wsf~ds-lYF~ 129 (370)
++..++..++...| ..++|+.-|. ..++
T Consensus 67 l~FsiISiLSIi~f-~i~~W~~~~~~~~~S 95 (210)
T PF09591_consen 67 LAFSIISILSIIAF-PIDKWENNDDPLFYS 95 (210)
T ss_pred HHHHHHHHHHHHhc-cccCCCCCCCceeEe
Confidence 33333334444444 5578999888 4443
Done!