Query psy4749
Match_columns 370
No_of_seqs 250 out of 2086
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 16:38:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3um7_A Potassium channel subfa 100.0 5.9E-32 2E-36 263.7 5.4 165 4-181 118-283 (309)
2 3ukm_A Potassium channel subfa 100.0 1.6E-32 5.3E-37 264.5 0.5 163 4-181 96-261 (280)
3 3ouf_A Potassium channel prote 99.6 7.6E-17 2.6E-21 131.9 2.7 75 102-183 13-87 (97)
4 3ldc_A Calcium-gated potassium 99.6 9E-17 3.1E-21 127.6 2.5 70 105-181 12-81 (82)
5 2q67_A Potassium channel prote 99.6 1.2E-16 4.3E-21 134.3 1.7 70 105-181 33-102 (114)
6 3eff_K Voltage-gated potassium 99.6 3E-16 1E-20 135.2 3.3 78 102-186 14-98 (139)
7 2k1e_A Water soluble analogue 99.6 8E-16 2.7E-20 126.7 2.9 73 104-183 16-95 (103)
8 3vou_A ION transport 2 domain 99.6 1.3E-15 4.6E-20 132.7 4.4 70 103-179 34-103 (148)
9 2ih3_C Voltage-gated potassium 99.5 5.3E-15 1.8E-19 125.5 4.0 73 105-184 38-117 (122)
10 4h33_A LMO2059 protein; bilaye 99.5 3.9E-15 1.3E-19 128.8 2.1 66 109-181 31-96 (137)
11 2a9h_A Voltage-gated potassium 99.5 1E-14 3.6E-19 129.0 2.5 73 104-183 60-139 (155)
12 3pjs_K KCSA, voltage-gated pot 99.4 9E-16 3.1E-20 136.5 -5.9 72 104-182 43-121 (166)
13 3um7_A Potassium channel subfa 99.4 1.9E-13 6.6E-18 133.2 5.0 70 118-194 112-181 (309)
14 1orq_C Potassium channel; volt 99.3 1.3E-12 4.3E-17 119.5 3.4 71 106-183 143-220 (223)
15 3ukm_A Potassium channel subfa 99.3 1.8E-12 6E-17 124.9 4.4 59 118-183 90-148 (280)
16 4gx0_A TRKA domain protein; me 99.2 2E-12 7E-17 133.1 3.6 90 117-221 45-138 (565)
17 1lnq_A MTHK channels, potassiu 99.2 1.7E-13 5.8E-18 132.2 -5.3 72 105-183 29-100 (336)
18 1xl4_A Inward rectifier potass 99.1 2.8E-11 9.6E-16 117.4 3.3 57 119-182 80-136 (301)
19 3beh_A MLL3241 protein; transm 99.1 3.6E-11 1.2E-15 116.8 3.5 74 106-186 139-219 (355)
20 1p7b_A Integral membrane chann 99.1 5.6E-11 1.9E-15 116.9 4.5 73 104-183 72-151 (333)
21 2qks_A KIR3.1-prokaryotic KIR 99.0 1.2E-10 4.2E-15 113.9 3.7 58 119-183 76-133 (321)
22 3eff_K Voltage-gated potassium 98.9 1E-10 3.6E-15 100.5 -0.2 50 4-53 43-93 (139)
23 3ldc_A Calcium-gated potassium 98.9 1.1E-10 3.6E-15 92.5 -0.4 48 4-51 31-79 (82)
24 2r9r_B Paddle chimera voltage 98.9 5.5E-10 1.9E-14 115.3 3.5 73 106-186 354-433 (514)
25 3ouf_A Potassium channel prote 98.9 1.7E-10 5.9E-15 94.1 -0.6 48 4-51 35-83 (97)
26 2k1e_A Water soluble analogue 98.8 3.5E-10 1.2E-14 92.8 -0.6 45 4-48 43-88 (103)
27 2q67_A Potassium channel prote 98.8 4E-10 1.4E-14 94.5 -0.4 49 4-52 52-101 (114)
28 4h33_A LMO2059 protein; bilaye 98.8 3.6E-10 1.2E-14 97.5 -1.3 45 4-48 46-91 (137)
29 3vou_A ION transport 2 domain 98.8 1.8E-09 6.3E-14 93.8 2.4 47 4-50 55-102 (148)
30 2ih3_C Voltage-gated potassium 98.8 9.7E-10 3.3E-14 93.0 0.6 45 4-48 64-109 (122)
31 3pjs_K KCSA, voltage-gated pot 98.7 3.4E-10 1.2E-14 100.4 -3.5 46 4-49 70-116 (166)
32 2a9h_A Voltage-gated potassium 98.7 1.2E-09 4.2E-14 96.4 -0.2 46 4-49 87-133 (155)
33 3sya_A G protein-activated inw 98.5 3.9E-08 1.3E-12 97.0 3.9 58 121-183 91-148 (340)
34 3spc_A Inward-rectifier K+ cha 98.4 8.1E-08 2.8E-12 94.8 3.2 56 121-183 94-151 (343)
35 1xl4_A Inward rectifier potass 98.3 7E-08 2.4E-12 93.5 -1.1 46 4-49 85-131 (301)
36 1lnq_A MTHK channels, potassiu 98.2 7.1E-08 2.4E-12 92.8 -1.8 47 4-50 48-95 (336)
37 1p7b_A Integral membrane chann 98.2 1.3E-07 4.3E-12 93.1 -0.2 48 4-51 99-147 (333)
38 2qks_A KIR3.1-prokaryotic KIR 98.2 1.5E-07 5E-12 92.1 -0.3 46 4-49 81-127 (321)
39 4gx0_A TRKA domain protein; me 98.1 4.7E-07 1.6E-11 93.1 -0.3 45 4-48 54-99 (565)
40 3beh_A MLL3241 protein; transm 98.0 7.3E-07 2.5E-11 86.4 0.6 49 4-52 164-213 (355)
41 3rvy_A ION transport protein; 97.8 1.1E-05 3.8E-10 76.0 3.6 61 121-184 180-242 (285)
42 2r9r_B Paddle chimera voltage 97.7 4.8E-06 1.6E-10 85.9 -0.2 48 4-51 378-426 (514)
43 3sya_A G protein-activated inw 97.6 7E-06 2.4E-10 80.9 -0.2 47 3-49 93-142 (340)
44 3spc_A Inward-rectifier K+ cha 97.3 3.1E-05 1.1E-09 76.4 -0.7 46 3-48 96-144 (343)
45 3rvy_A ION transport protein; 91.3 0.018 6.2E-07 53.9 -2.2 49 5-57 184-239 (285)
46 4dxw_A Navrh, ION transport pr 87.3 0.34 1.2E-05 43.6 3.2 59 121-182 165-224 (229)
47 3kg2_A Glutamate receptor 2; I 79.4 0.84 2.9E-05 47.9 2.7 52 122-181 564-615 (823)
48 3pjz_A Potassium uptake protei 68.3 3.1 0.00011 42.6 3.5 45 119-166 421-467 (494)
No 1
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.97 E-value=5.9e-32 Score=263.66 Aligned_cols=165 Identities=25% Similarity=0.419 Sum_probs=127.7
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQDLSEDERN 82 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~~i~~~l~~i~r~~~~r~lrr~g~~~~~~~e~ 82 (370)
.++||+.+ +|||||||++|.|..||+|+++|+++|||++.++++.+.+.+.+.+....++... .+++.+.. .
T Consensus 118 ~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~-~~~~~~~~----~-- 190 (309)
T 3um7_A 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEA-IFLKWHVP----P-- 190 (309)
T ss_dssp HHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HHTTTC------C--
T ss_pred hhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHhccccc----h--
Confidence 47899999 9999999999999999999999999999999888887777766655443333222 12211100 0
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHhhhhhhccccCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHH
Q psy4749 83 ESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIF 162 (370)
Q Consensus 83 ~~l~~wk~sv~~v~Lil~i~~~v~l~~gA~if~~~E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~ 162 (370)
. .......++++++++++++++++++|+..|+|+|+||+|||++|+|||||||++|.++.|+. ++.|++++++|
T Consensus 191 -~----~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~-~~~y~~~~~~~ 264 (309)
T 3um7_A 191 -E----LVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQD-SPAYQPLVWFW 264 (309)
T ss_dssp -C----HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCC-CSTHHHHHHHH
T ss_pred -h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCccccc-cchHHHHHHHH
Confidence 0 00111223344455556778899999999999999999999999999999999999998854 56899999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4749 163 LILGCSCIYSLFNVTSIVI 181 (370)
Q Consensus 163 il~Gl~l~~~~~~vi~~~i 181 (370)
+++|+++++++++.++..+
T Consensus 265 il~Gl~~~a~~~~~i~~~~ 283 (309)
T 3um7_A 265 ILLGLAYFASVLTTIGNWL 283 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998766655
No 2
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.97 E-value=1.6e-32 Score=264.46 Aligned_cols=163 Identities=28% Similarity=0.479 Sum_probs=126.1
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCCCcchh
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYI-LRALYIRKLLRSGQDLSEDER 81 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~~i~~~l~~i-~r~~~~r~lrr~g~~~~~~~e 81 (370)
.|+||+.+ +|||||||++|.|++||+|+++|+++|||+++++++.+.+++....... .+++++ +.+. +.
T Consensus 96 ~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~-----~~ 166 (280)
T 3ukm_A 96 SALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHI----RWGF-----SK 166 (280)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTC---------------CC
T ss_pred cchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcC-----Ch
Confidence 57899999 9999999999999999999999999999999999988888776544210 111110 0000 00
Q ss_pred hhccccccchhHHHHHHHHHHHHHHHHhhhhhhcccc-CCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHH
Q psy4749 82 NESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYE-NWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNY 160 (370)
Q Consensus 82 ~~~l~~wk~sv~~v~Lil~i~~~v~l~~gA~if~~~E-~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~ 160 (370)
. +.+....+++.+++.++++++++++|+..| +|+|+||+|||++|+|||||||++|.+++++.+..+||++++
T Consensus 167 --~----~~~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~ 240 (280)
T 3ukm_A 167 --Q----VVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGIT 240 (280)
T ss_dssp --H----HHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHH
T ss_pred --h----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHH
Confidence 0 111122222333344456678999999888 999999999999999999999999999988777788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4749 161 IFLILGCSCIYSLFNVTSIVI 181 (370)
Q Consensus 161 i~il~Gl~l~~~~~~vi~~~i 181 (370)
+||++|+++++++++.+.+.+
T Consensus 241 ~~il~Gl~~~~~~~~~i~~~~ 261 (280)
T 3ukm_A 241 CYLLLGLIAMLVVLETFCELH 261 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887655
No 3
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.62 E-value=7.6e-17 Score=131.94 Aligned_cols=75 Identities=15% Similarity=0.505 Sum_probs=67.4
Q ss_pred HHHHHHHhhhhhhccccCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 102 ASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVI 181 (370)
Q Consensus 102 ~~~v~l~~gA~if~~~E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i 181 (370)
.++++++.|+++|+..|+|+|.||+||+++|+|||||||++|.+..| |+++++++++|+++++.+++.++..+
T Consensus 13 ~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~g-------r~~~~~~~~~G~~~~~~~i~~i~~~~ 85 (97)
T 3ouf_A 13 LTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFG-------KIFTILYIFIGIGLVFGFIHKLAVNV 85 (97)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667899999999999999999999999999999999998877 99999999999999999999998877
Q ss_pred HH
Q psy4749 182 KQ 183 (370)
Q Consensus 182 ~~ 183 (370)
+.
T Consensus 86 ~~ 87 (97)
T 3ouf_A 86 QL 87 (97)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 4
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.62 E-value=9e-17 Score=127.60 Aligned_cols=70 Identities=17% Similarity=0.377 Sum_probs=64.0
Q ss_pred HHHHhhhhhhccccCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 105 VIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVI 181 (370)
Q Consensus 105 v~l~~gA~if~~~E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i 181 (370)
.+++.++.+|+..|+|+|.||+||+++|+|||||||++|.+..+ |+++++++++|+++++.+++.+.+.+
T Consensus 12 ~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~-------r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 12 AVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLG-------MYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999998877 99999999999999999998887654
No 5
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.60 E-value=1.2e-16 Score=134.26 Aligned_cols=70 Identities=13% Similarity=0.474 Sum_probs=64.0
Q ss_pred HHHHhhhhhhccccCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 105 VIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVI 181 (370)
Q Consensus 105 v~l~~gA~if~~~E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i 181 (370)
+++++|+++|...|+|+|.||+||+++|+|||||||++|.+..| |+++++++++|+++++..++.+...+
T Consensus 33 ~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~g-------r~~~~~~~~~G~~~~~~~~~~l~~~~ 102 (114)
T 2q67_A 33 LTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFG-------KIFTILYIFIGIGLVFGFIHKLAVNV 102 (114)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889998899999999999999999999999999998877 99999999999999999988888776
No 6
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.59 E-value=3e-16 Score=135.21 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=67.2
Q ss_pred HHHHHHHhhhhhhccccC-------CCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q psy4749 102 ASIVIAGCASFVYVPYEN-------WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLF 174 (370)
Q Consensus 102 ~~~v~l~~gA~if~~~E~-------Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~ 174 (370)
++++++++++.+++..|+ |+|.||+||+++|+|||||||++|.+..| |+++++++++|++++++++
T Consensus 14 ~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~-------r~~~~~~~~~G~~~~~~~~ 86 (139)
T 3eff_K 14 LLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG-------RLVAVVVMVAGITSFGLVT 86 (139)
T ss_dssp HHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCH-------HHHHHHHHHHHHHHHHHHH
Confidence 334455667888888886 99999999999999999999999999877 9999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy4749 175 NVTSIVIKQFLN 186 (370)
Q Consensus 175 ~vi~~~i~~~l~ 186 (370)
+.+...+.+...
T Consensus 87 ~~i~~~~~~~~~ 98 (139)
T 3eff_K 87 AALATWFVGREQ 98 (139)
T ss_dssp HHHTTTTTHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988877755443
No 7
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.56 E-value=8e-16 Score=126.72 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=64.1
Q ss_pred HHHHHhhhhhhccccCC-------CcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy4749 104 IVIAGCASFVYVPYENW-------TYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNV 176 (370)
Q Consensus 104 ~v~l~~gA~if~~~E~W-------sf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~v 176 (370)
++++++++.+|+..|+| +|.||+||+++|+|||||||++|.+..+ |+++++++++|+.+++++++.
T Consensus 16 ~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-------r~~~~~~~l~G~~~~~~~~~~ 88 (103)
T 2k1e_A 16 QKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEG-------RKVAEQVMKAGIEVFALVTAA 88 (103)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSC-------THHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34455678888888986 9999999999999999999999999888 999999999999999998888
Q ss_pred HHHHHHH
Q psy4749 177 TSIVIKQ 183 (370)
Q Consensus 177 i~~~i~~ 183 (370)
+...+.+
T Consensus 89 i~~~~~~ 95 (103)
T 2k1e_A 89 LATDFVR 95 (103)
T ss_dssp HHTTGGG
T ss_pred HHHHHHH
Confidence 8776654
No 8
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.56 E-value=1.3e-15 Score=132.74 Aligned_cols=70 Identities=14% Similarity=0.489 Sum_probs=63.2
Q ss_pred HHHHHHhhhhhhccccCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 103 SIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSI 179 (370)
Q Consensus 103 ~~v~l~~gA~if~~~E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~ 179 (370)
+++++++|+++|...|+|+|.||+||+++|+|||||||++|.+..| |+++++++++|+++++.+++.+..
T Consensus 34 ~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~-------r~~~~~~~~~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 34 TFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFG-------KVFTILYIFIGIGLVFGFIHKLAV 103 (148)
T ss_dssp HHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888998999999999999999999999999999998877 999999999999999998887775
No 9
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.51 E-value=5.3e-15 Score=125.48 Aligned_cols=73 Identities=12% Similarity=0.211 Sum_probs=63.9
Q ss_pred HHHHhhhhhhccccC-------CCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy4749 105 VIAGCASFVYVPYEN-------WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVT 177 (370)
Q Consensus 105 v~l~~gA~if~~~E~-------Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi 177 (370)
+++.+++.+++..|+ |+|.||+||+++|+|||||||++|.+..| |+++++++++|+.++++.++.+
T Consensus 38 ~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-------r~~~~~~~~~Gi~~~~~~~~~i 110 (122)
T 2ih3_C 38 IVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWG-------RLVAVVVMVAGITSFGLVTAAL 110 (122)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777785 99999999999999999999999999887 9999999999999999999988
Q ss_pred HHHHHHH
Q psy4749 178 SIVIKQF 184 (370)
Q Consensus 178 ~~~i~~~ 184 (370)
...+.+.
T Consensus 111 ~~~~~~~ 117 (122)
T 2ih3_C 111 ATWFVGR 117 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877653
No 10
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.50 E-value=3.9e-15 Score=128.82 Aligned_cols=66 Identities=20% Similarity=0.418 Sum_probs=57.0
Q ss_pred hhhhhhccccCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 109 CASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVI 181 (370)
Q Consensus 109 ~gA~if~~~E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i 181 (370)
.++..+...|.|+|.||+||+++|+|||||||++|.+..| |+++++++++|+++++.+++.++..+
T Consensus 31 ~~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-------r~~~~~~~~~g~~~~~~~~~~i~~~~ 96 (137)
T 4h33_A 31 PVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIG-------RILASIMMLFGIAFIGMITSTITNFF 96 (137)
T ss_dssp HHHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556899999999999999999999999999887 99999999999999999888776555
No 11
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.46 E-value=1e-14 Score=128.97 Aligned_cols=73 Identities=14% Similarity=0.293 Sum_probs=63.8
Q ss_pred HHHHHhhhhhhccccCC-------CcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy4749 104 IVIAGCASFVYVPYENW-------TYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNV 176 (370)
Q Consensus 104 ~v~l~~gA~if~~~E~W-------sf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~v 176 (370)
++++++++.+|+..|+| +|.||+||+++|+|||||||++|.+..| |+++++++++|+++++++++.
T Consensus 60 ~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~g-------r~~~~~~~l~Gv~~~a~~~~~ 132 (155)
T 2a9h_A 60 VIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWG-------RCVAVVVMVAGITSYGLVFAA 132 (155)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34445678888888987 8999999999999999999999999877 999999999999999999988
Q ss_pred HHHHHHH
Q psy4749 177 TSIVIKQ 183 (370)
Q Consensus 177 i~~~i~~ 183 (370)
+...+.+
T Consensus 133 i~~~~~~ 139 (155)
T 2a9h_A 133 VATWFVG 139 (155)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 8877643
No 12
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.44 E-value=9e-16 Score=136.49 Aligned_cols=72 Identities=14% Similarity=0.278 Sum_probs=63.4
Q ss_pred HHHHHhhhhhhccccC-------CCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy4749 104 IVIAGCASFVYVPYEN-------WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNV 176 (370)
Q Consensus 104 ~v~l~~gA~if~~~E~-------Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~v 176 (370)
++++++++++++..|+ |+|+||+||+++|+|||||||++|.+..| |+++++++++|+++++++++.
T Consensus 43 ~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~-------r~~~~~~~l~G~~~~~~~~~~ 115 (166)
T 3pjs_K 43 VIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG-------RLVAVVVMVAGITSFGLVTAA 115 (166)
T ss_dssp TTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTT-------TTTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888888887 99999999999999999999999999888 999999999999999998887
Q ss_pred HHHHHH
Q psy4749 177 TSIVIK 182 (370)
Q Consensus 177 i~~~i~ 182 (370)
+...+.
T Consensus 116 i~~~~~ 121 (166)
T 3pjs_K 116 LATWFV 121 (166)
T ss_dssp SSSSSS
T ss_pred HHHHHH
Confidence 776553
No 13
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=133.23 Aligned_cols=70 Identities=14% Similarity=0.259 Sum_probs=63.5
Q ss_pred cCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4749 118 ENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDM 194 (370)
Q Consensus 118 E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~~l~~l~~k~~~ 194 (370)
|+|+|.||+||+++|+|||||||++|.+..| |+++++|+++|+++++.+++.++..+.+.+.+..++++.
T Consensus 112 ~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~g-------k~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~ 181 (309)
T 3um7_A 112 SAWDLGSAFFFSGTIITTIGYGNVALRTDAG-------RLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEA 181 (309)
T ss_dssp -CCSHHHHHHHHHHHHTSCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCChhhhhHhhheeeeecccCCCCCCCccc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3599999999999999999999999999988 999999999999999999999999998887776666654
No 14
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.27 E-value=1.3e-12 Score=119.53 Aligned_cols=71 Identities=20% Similarity=0.354 Sum_probs=62.8
Q ss_pred HHHhhhhhhccccC-------CCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy4749 106 IAGCASFVYVPYEN-------WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTS 178 (370)
Q Consensus 106 ~l~~gA~if~~~E~-------Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~ 178 (370)
++.+++.+++..|+ |+|.||+||+++|+|||||||++|.+..| |+++++++++|+.+++++++.++
T Consensus 143 ~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~-------~~~~~~~~~~G~~~~~~~i~~i~ 215 (223)
T 1orq_C 143 TVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIG-------KVIGIAVMLTGISALTLLIGTVS 215 (223)
T ss_dssp HHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777886 99999999999999999999999998877 99999999999999999999988
Q ss_pred HHHHH
Q psy4749 179 IVIKQ 183 (370)
Q Consensus 179 ~~i~~ 183 (370)
..+.+
T Consensus 216 ~~~~~ 220 (223)
T 1orq_C 216 NMFQK 220 (223)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 15
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.27 E-value=1.8e-12 Score=124.90 Aligned_cols=59 Identities=19% Similarity=0.385 Sum_probs=54.3
Q ss_pred cCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 118 ENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQ 183 (370)
Q Consensus 118 E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~ 183 (370)
|+|+|.||+||+++|+|||||||++|.++.| |+++++|+++|++++..+++.+...+..
T Consensus 90 ~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~G-------k~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 90 WNWDFTSALFFASTVLSTTGYGHTVPLSDGG-------KAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhcchhheeeeeeccccCCcCCCCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999988 9999999999999999998888766544
No 16
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.24 E-value=2e-12 Score=133.15 Aligned_cols=90 Identities=14% Similarity=0.264 Sum_probs=64.6
Q ss_pred ccC--CCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHhh
Q psy4749 117 YEN--WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNV-TS-IVIKQFLNWLIYEM 192 (370)
Q Consensus 117 ~E~--Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~v-i~-~~i~~~l~~l~~k~ 192 (370)
.|+ |+|+||+||+++|+|||||||++|.+..| |+++++++++|+++++++++. +. ..+...+ .+++
T Consensus 45 ~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~ 114 (565)
T 4gx0_A 45 LEGRAYSFMAGIYWTITVMTTLGFGDITFESDAG-------YLFASIVTVSGVIFLDIILPFGFVSMFLAPWI---ERRL 114 (565)
T ss_dssp HHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH---HHHT
T ss_pred hcCCCCchhhhhheeeeeeeeecCCCcCCCCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 565 99999999999999999999999998877 999999999999999988875 33 3333322 2222
Q ss_pred hhcccCCCCCCCCcccccccccccccccc
Q psy4749 193 DMFCCRKPPDKTGRVLRRHSIRVQRERER 221 (370)
Q Consensus 193 ~~~cc~~~~~~~~~~~rr~~v~v~gp~~~ 221 (370)
+.. ..++.....++++.++|-|..
T Consensus 115 ~~~-----~~~~~~~~~~~hviI~G~g~~ 138 (565)
T 4gx0_A 115 RYH-----PTIELPDDTRGHILIFGIDPI 138 (565)
T ss_dssp SCC-----CBCCCCTTCCSCEEEESCCHH
T ss_pred Hhh-----cccccccccCCeEEEECCChH
Confidence 221 122222344677778887653
No 17
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.22 E-value=1.7e-13 Score=132.25 Aligned_cols=72 Identities=17% Similarity=0.367 Sum_probs=63.1
Q ss_pred HHHHhhhhhhccccCCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 105 VIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQ 183 (370)
Q Consensus 105 v~l~~gA~if~~~E~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~ 183 (370)
+++++++++|+..|+|+|.||+||+++|+|||||||++|.+..+ |+++++++++|+++++++++.+...+.+
T Consensus 29 ~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~-------r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 29 AVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLG-------MYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp TSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSH-------HHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889998999999999999999999999999999998877 9999999999999999988877766543
No 18
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.09 E-value=2.8e-11 Score=117.44 Aligned_cols=57 Identities=11% Similarity=0.230 Sum_probs=51.7
Q ss_pred CCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 119 NWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIK 182 (370)
Q Consensus 119 ~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~ 182 (370)
.|+|.||+||+++|+|||||||++|.+..| |+++++++++|+.+++++++.+...+.
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~g-------r~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLA-------NTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999998877 999999999999999998887766664
No 19
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.08 E-value=3.6e-11 Score=116.79 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=63.5
Q ss_pred HHHhhhhhhccccCC-------CcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy4749 106 IAGCASFVYVPYENW-------TYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTS 178 (370)
Q Consensus 106 ~l~~gA~if~~~E~W-------sf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~ 178 (370)
++.++|.+++..|+| +|.||+||+++|+|||||||++|.+..| |+++++++++|+.+++++++.+.
T Consensus 139 ~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~-------~~~~~~~~~~g~~~~~~~~~~i~ 211 (355)
T 3beh_A 139 VLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAG-------RVLAGAVMMSGIGIFGLWAGILA 211 (355)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777865 8999999999999999999999998877 99999999999999999999988
Q ss_pred HHHHHHHH
Q psy4749 179 IVIKQFLN 186 (370)
Q Consensus 179 ~~i~~~l~ 186 (370)
..+.+...
T Consensus 212 ~~~~~~~~ 219 (355)
T 3beh_A 212 TGFYQEVR 219 (355)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766543
No 20
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.07 E-value=5.6e-11 Score=116.90 Aligned_cols=73 Identities=14% Similarity=0.212 Sum_probs=59.1
Q ss_pred HHHHHhhhhhhcccc-------CCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy4749 104 IVIAGCASFVYVPYE-------NWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNV 176 (370)
Q Consensus 104 ~v~l~~gA~if~~~E-------~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~v 176 (370)
++++++++++|.... .++|.||+||+++|+|||||||++|.+..| ++++++++++|+.++++++..
T Consensus 72 l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~g-------r~~~~~~~l~G~~~~a~~ig~ 144 (333)
T 1p7b_A 72 VVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYA-------HAIATLEIFVGMSGIALSTGL 144 (333)
T ss_dssp HHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 333445566664321 468999999999999999999999998777 999999999999999998887
Q ss_pred HHHHHHH
Q psy4749 177 TSIVIKQ 183 (370)
Q Consensus 177 i~~~i~~ 183 (370)
+...+.+
T Consensus 145 i~~~~~~ 151 (333)
T 1p7b_A 145 VFARFAR 151 (333)
T ss_dssp HHHHHTS
T ss_pred HHHHHHH
Confidence 7776643
No 21
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.00 E-value=1.2e-10 Score=113.93 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=52.8
Q ss_pred CCCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 119 NWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQ 183 (370)
Q Consensus 119 ~Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~ 183 (370)
+|+|.||+||+++|+|||||||++|.+..| |+++++++++|+.++++++..+...+.+
T Consensus 76 ~~s~~~a~y~s~vT~tTVGYGDi~P~t~~g-------r~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 76 PAGFGGAFFFSVETLATVGYGDMHPQTVYA-------HWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp STTHHHHHHHHHHHHTTCCCCSSCBCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcchhheeeeeeEEeccccCCCcCcccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999998877 9999999999999999988887776654
No 22
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=98.92 E-value=1e-10 Score=100.46 Aligned_cols=50 Identities=24% Similarity=0.274 Sum_probs=43.7
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERI 53 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~~i 53 (370)
.++||+.+ +|||||||++|.|..||+++++++++|++++.++++.+.+.+
T Consensus 43 ~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~ 93 (139)
T 3eff_K 43 RALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWF 93 (139)
T ss_dssp HHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899988 999999999999999999999999999998877776654433
No 23
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.91 E-value=1.1e-10 Score=92.47 Aligned_cols=48 Identities=29% Similarity=0.432 Sum_probs=42.1
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLE 51 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~ 51 (370)
+++||+.+ +|||||||++|.|+.||+++++|+++|++++.+.++.+.+
T Consensus 31 ~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~ 79 (82)
T 3ldc_A 31 VSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLE 79 (82)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 9999999999999999999999999999887776665443
No 24
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.88 E-value=5.5e-10 Score=115.26 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=60.3
Q ss_pred HHHhhhhhhccccC-------CCcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy4749 106 IAGCASFVYVPYEN-------WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTS 178 (370)
Q Consensus 106 ~l~~gA~if~~~E~-------Wsf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~ 178 (370)
+.++|+++| ..|+ .+|.||+||+++|+|||||||++|.+..| ++++++++++|+.+++++++++.
T Consensus 354 ~~if~~~~~-~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~g-------r~f~~~~~l~G~~~l~l~iavI~ 425 (514)
T 2r9r_B 354 VILFSSAVY-FAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGG-------KIVGSLCAIAGVLTIALPVPVIV 425 (514)
T ss_dssp HHHHHHHHH-HHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHhhhh-eeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcch-------HhhehhHHHHHHHHHHHHHHHHH
Confidence 334555555 3454 38999999999999999999999998777 99999999999999999999888
Q ss_pred HHHHHHHH
Q psy4749 179 IVIKQFLN 186 (370)
Q Consensus 179 ~~i~~~l~ 186 (370)
..+.+..+
T Consensus 426 ~~f~~~~~ 433 (514)
T 2r9r_B 426 SNFNYFYH 433 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766544
No 25
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.87 E-value=1.7e-10 Score=94.09 Aligned_cols=48 Identities=31% Similarity=0.478 Sum_probs=41.7
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLE 51 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~ 51 (370)
+++||+.+ +|||||||++|.|..||+++++|+++|++++.++++.+.+
T Consensus 35 ~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~ 83 (97)
T 3ouf_A 35 DALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAV 83 (97)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 9999999999999999999999999999877666654433
No 26
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.82 E-value=3.5e-10 Score=92.81 Aligned_cols=45 Identities=22% Similarity=0.191 Sum_probs=39.6
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNL 48 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l 48 (370)
.++||+.+ +|||||||++|.|+.||+++++++++|+.++.++++.
T Consensus 43 ~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~ 88 (103)
T 2k1e_A 43 DAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAA 88 (103)
T ss_dssp GTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 9999999999999999999999999998766555443
No 27
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=98.81 E-value=4e-10 Score=94.47 Aligned_cols=49 Identities=29% Similarity=0.405 Sum_probs=42.3
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLER 52 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~~ 52 (370)
+++||+.+ +|||||||++|.|+.||+++++|+++|+++....++.+.+.
T Consensus 52 ~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~ 101 (114)
T 2q67_A 52 DALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVN 101 (114)
T ss_dssp HHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 99999999999999999999999999998776666554443
No 28
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=98.79 E-value=3.6e-10 Score=97.55 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=39.6
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNL 48 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l 48 (370)
+++||+.+ +|||||||++|.|+.||++++++.++|+.++.++++.
T Consensus 46 ~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~ 91 (137)
T 4h33_A 46 DALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITST 91 (137)
T ss_dssp HHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 9999999999999999999999999998766555443
No 29
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=98.77 E-value=1.8e-09 Score=93.79 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=42.0
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFL 50 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l 50 (370)
+++||+.+ +|||||||++|.|..||+|+++|+++|++++..+++.+.
T Consensus 55 ~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~ 102 (148)
T 3vou_A 55 DALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLA 102 (148)
T ss_dssp HHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 999999999999999999999999999988777666544
No 30
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=98.77 E-value=9.7e-10 Score=92.98 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=39.5
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNL 48 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l 48 (370)
+++||+.+ +|||||||++|.|+.||+++++++++|+.+..+.++.
T Consensus 64 ~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~ 109 (122)
T 2ih3_C 64 RALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAA 109 (122)
T ss_dssp HHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 9999999999999999999999999998766555443
No 31
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.73 E-value=3.4e-10 Score=100.44 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=41.3
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLF 49 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~ 49 (370)
.++||+.+ +|||||||++|.|..||+++++++++|++++.++++.+
T Consensus 70 ~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i 116 (166)
T 3pjs_K 70 RALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAAL 116 (166)
T ss_dssp TTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 99999999999999999999999999998877766543
No 32
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=98.72 E-value=1.2e-09 Score=96.37 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=40.3
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLF 49 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~ 49 (370)
.++||+.+ +|||||||++|.|+.||+++++++++|+.++.++++.+
T Consensus 87 ~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i 133 (155)
T 2a9h_A 87 DALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAV 133 (155)
T ss_dssp HHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899988 99999999999999999999999999988766555443
No 33
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.52 E-value=3.9e-08 Score=97.02 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=49.1
Q ss_pred CcccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 121 TYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQ 183 (370)
Q Consensus 121 sf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~ 183 (370)
+|.|++||+++|+|||||||+.|.++. +..+++..+.+++|+.+++.+..++...+.+
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~-----~~g~~l~~~~~l~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKC-----PEGIILLLIQSVLGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 789999999999999999999997421 2238999999999999999988877776654
No 34
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.42 E-value=8.1e-08 Score=94.83 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=48.0
Q ss_pred CcccceeeeeEEeecccccccccc--CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 121 TYLESIYFCFVSFSTIGFGDYVSA--QAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQ 183 (370)
Q Consensus 121 sf~dslYF~fvTlTTIGfGDivP~--t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~ 183 (370)
+|.|++||+++|+|||||||+.|. +..+ +++..+-+++|+.+++.+..++...+.+
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~-------~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLA-------VFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 789999999999999999999986 3334 8999999999999999988777766643
No 35
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.27 E-value=7e-08 Score=93.54 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=40.2
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLF 49 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~ 49 (370)
.++||+.+ +|||||||++|.|+.||+++++.+++|+.+..++.+.+
T Consensus 85 ~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v 131 (301)
T 1xl4_A 85 DAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLI 131 (301)
T ss_dssp HHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 99999999999999999999999999987665555443
No 36
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.24 E-value=7.1e-08 Score=92.84 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=41.5
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFL 50 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l 50 (370)
.++||+.+ +|||||||++|.|..||+|++++.++|+.++.++++.+.
T Consensus 48 ~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~ 95 (336)
T 1lnq_A 48 VSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLL 95 (336)
T ss_dssp TTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHT
T ss_pred HHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 999999999999999999999999999987766665543
No 37
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.24 E-value=1.3e-07 Score=93.07 Aligned_cols=48 Identities=29% Similarity=0.308 Sum_probs=41.0
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLE 51 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~ 51 (370)
.++||+.+ +|||||||++|.|+.||+++++++++|+.+..++++.+..
T Consensus 99 ~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~ 147 (333)
T 1p7b_A 99 GAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFA 147 (333)
T ss_dssp HHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 9999999999999999999999999998766555544433
No 38
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.22 E-value=1.5e-07 Score=92.13 Aligned_cols=46 Identities=26% Similarity=0.213 Sum_probs=39.7
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLF 49 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~ 49 (370)
.++||+.+ +|||||||++|.|..||+++++.+++|+.+..++.+.+
T Consensus 81 ~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i 127 (321)
T 2qks_A 81 GAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCA 127 (321)
T ss_dssp HHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 99999999999999999999999999987655544443
No 39
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.06 E-value=4.7e-07 Score=93.13 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=40.3
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNL 48 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l 48 (370)
.++||+.+ +|||||||++|.|..||+|++++.++|+.++.++++.
T Consensus 54 ~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 54 AGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 9999999999999999999999999999877665554
No 40
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.04 E-value=7.3e-07 Score=86.37 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=41.5
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLER 52 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~~ 52 (370)
.++||+.+ +||+||||++|.|..||++++++.++|+.+..++.+.+.+.
T Consensus 164 ~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~ 213 (355)
T 3beh_A 164 QAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATG 213 (355)
T ss_dssp HHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899988 99999999999999999999999999987666655554433
No 41
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.77 E-value=1.1e-05 Score=76.05 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=48.6
Q ss_pred CcccceeeeeEEeeccccc-ccc-ccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 121 TYLESIYFCFVSFSTIGFG-DYV-SAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQF 184 (370)
Q Consensus 121 sf~dslYF~fvTlTTIGfG-Div-P~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i~~~ 184 (370)
|+.||+|+.|+++||+||| |+. |.+..+ ...++++..+.++.|+.++.++++++.+.+.+.
T Consensus 180 s~~~a~~~~~~~~T~~g~~~di~~p~~~~~---~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~ 242 (285)
T 3rvy_A 180 TLGESFYTLFQVMTLESWSMGIVRPLMEVY---PYAWVFFIPFIFVVTFVMINLVVAICVDAMAIL 242 (285)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCCHHHHHTTC---TTTHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHcC---ChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999 997 887654 123467888888889999999999888887653
No 42
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=97.70 E-value=4.8e-06 Score=85.90 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=39.4
Q ss_pred eeEEEEee-eeceecCCCccCCccchhhHhHHhhhchhhHHHHHHHHHH
Q psy4749 4 VLSFWVEL-NYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLE 51 (370)
Q Consensus 4 ~a~yf~~T-iTTIGYGdiaP~T~~GKlf~I~YaLiGIPl~il~~~l~l~ 51 (370)
.++||+.+ +||+||||+.|.|.+||+|++++.++|+.+..++++.+.+
T Consensus 378 ~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~ 426 (514)
T 2r9r_B 378 DAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVS 426 (514)
T ss_dssp HHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHH
Confidence 46889888 9999999999999999999999999997655444444433
No 43
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=97.63 E-value=7e-06 Score=80.94 Aligned_cols=47 Identities=13% Similarity=0.264 Sum_probs=39.3
Q ss_pred eeeEEEEee-eeceecCCCccC--CccchhhHhHHhhhchhhHHHHHHHH
Q psy4749 3 TVLSFWVEL-NYKVGYGSTAPQ--TTPGKLFVIVYGFLGCSGGILFFNLF 49 (370)
Q Consensus 3 t~a~yf~~T-iTTIGYGdiaP~--T~~GKlf~I~YaLiGIPl~il~~~l~ 49 (370)
+.++||+.+ +|||||||++|. |+.|++++.+-+++|+-+..+..+.+
T Consensus 93 ~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv 142 (340)
T 3sya_A 93 VSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCM 142 (340)
T ss_dssp THHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899988 999999999997 89999999999999986555544443
No 44
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=97.28 E-value=3.1e-05 Score=76.40 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=37.5
Q ss_pred eeeEEEEee-eeceecCCCcc--CCccchhhHhHHhhhchhhHHHHHHH
Q psy4749 3 TVLSFWVEL-NYKVGYGSTAP--QTTPGKLFVIVYGFLGCSGGILFFNL 48 (370)
Q Consensus 3 t~a~yf~~T-iTTIGYGdiaP--~T~~GKlf~I~YaLiGIPl~il~~~l 48 (370)
+.++||+.+ +|||||||++| .|+.|++++.+=+++|+-+..++.+.
T Consensus 96 ~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~gi 144 (343)
T 3spc_A 96 VAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGA 144 (343)
T ss_dssp HHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899988 99999999986 49999999999999997554444433
No 45
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=91.28 E-value=0.018 Score=53.86 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=32.2
Q ss_pred eEEEEee-eeceecC-CCc-cCCccc----hhhHhHHhhhchhhHHHHHHHHHHHHHHHH
Q psy4749 5 LSFWVEL-NYKVGYG-STA-PQTTPG----KLFVIVYGFLGCSGGILFFNLFLERIITLL 57 (370)
Q Consensus 5 a~yf~~T-iTTIGYG-dia-P~T~~G----Klf~I~YaLiGIPl~il~~~l~l~~i~~~l 57 (370)
++||+.+ +||.||| |+. |.|..| +.|+++..+.| ++++|++..-+.+.+
T Consensus 184 a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~----~~~lnl~~aii~~~f 239 (285)
T 3rvy_A 184 SFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVT----FVMINLVVAICVDAM 239 (285)
T ss_dssp HHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHH----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 5677777 9999999 996 999977 45555555545 345555554444433
No 46
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=87.26 E-value=0.34 Score=43.60 Aligned_cols=59 Identities=7% Similarity=-0.023 Sum_probs=37.9
Q ss_pred CcccceeeeeEEeeccccccccccCCCCCCCCcchh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 121 TYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYS-FWNYIFLILGCSCIYSLFNVTSIVIK 182 (370)
Q Consensus 121 sf~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yr-v~~~i~il~Gl~l~~~~~~vi~~~i~ 182 (370)
|+.+|+|..|.++||.|++|+......+ .++.. ++..+.++.+..++.++++++.+.++
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~~---~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETVMLPMQEI---YWWSWVYFFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHHHHHHHTT---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999986544322 22222 33334444445566666666666554
No 47
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=79.41 E-value=0.84 Score=47.86 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=37.5
Q ss_pred cccceeeeeEEeeccccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4749 122 YLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVI 181 (370)
Q Consensus 122 f~dslYF~fvTlTTIGfGDivP~t~~g~~~~~~yrv~~~i~il~Gl~l~~~~~~vi~~~i 181 (370)
+.+++||++.+++..| ++..|.+..+ |++.++|.++++.++.+..+.+...+
T Consensus 564 ~~~~~~~~~~~l~~~g-~~~~p~~~~~-------R~~~~~w~~~~lil~~~Yta~L~s~L 615 (823)
T 3kg2_A 564 IFNSLWFSLGAFMQQG-ADISPRSLSG-------RIVGGVWWFFTLIIISSYTANLAAFL 615 (823)
T ss_dssp HHHHHHHTTTTSCC-------CCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCcCCcchhh-------hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999 6788887666 99999999999988887666555544
No 48
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=68.32 E-value=3.1 Score=42.61 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=28.9
Q ss_pred CCCcccceeeeeEEeecccc--ccccccCCCCCCCCcchhhHHHHHHHHH
Q psy4749 119 NWTYLESIYFCFVSFSTIGF--GDYVSAQAIDYPNSSLYSFWNYIFLILG 166 (370)
Q Consensus 119 ~Wsf~dslYF~fvTlTTIGf--GDivP~t~~g~~~~~~yrv~~~i~il~G 166 (370)
+.++.++++=+..+++|||- |..-|.+. +-+...|++.++.+++|
T Consensus 421 g~~~~~a~~~v~Sal~nvG~s~G~vg~~~~---~L~~~~K~vl~~~M~~G 467 (494)
T 3pjz_A 421 GMDELSAFSAVAATLNNLGPGLGEVALHFG---DVNDKAKWVLIVSMLFG 467 (494)
T ss_dssp SSCHHHHHHHHHHHTTTCCSCCSSSCCCCS---SSCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHcCCCCcccccCCCcc---cCCHHHHHHHHHHHHHH
Confidence 57899999999999999995 43323211 11234476666666666
Done!